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36 * Note: this file was generated by the GROMACS sse4_1_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "types/simple.h"
46 #include "gromacs/math/vec.h"
49 #include "gromacs/simd/math_x86_sse4_1_double.h"
50 #include "kernelutil_x86_sse4_1_double.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW3W3_VF_sse4_1_double
54 * Electrostatics interaction: Ewald
55 * VdW interaction: LennardJones
56 * Geometry: Water3-Water3
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecEw_VdwLJ_GeomW3W3_VF_sse4_1_double
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
77 int j_coord_offsetA,j_coord_offsetB;
78 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
80 real *shiftvec,*fshift,*x,*f;
81 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 int vdwjidx0A,vdwjidx0B;
89 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 int vdwjidx1A,vdwjidx1B;
91 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
92 int vdwjidx2A,vdwjidx2B;
93 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
94 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
95 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
96 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
97 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
98 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
99 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
100 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
101 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
102 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
103 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
106 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
109 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
110 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
112 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
114 __m128d dummy_mask,cutoff_mask;
115 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
116 __m128d one = _mm_set1_pd(1.0);
117 __m128d two = _mm_set1_pd(2.0);
123 jindex = nlist->jindex;
125 shiftidx = nlist->shift;
127 shiftvec = fr->shift_vec[0];
128 fshift = fr->fshift[0];
129 facel = _mm_set1_pd(fr->epsfac);
130 charge = mdatoms->chargeA;
131 nvdwtype = fr->ntype;
133 vdwtype = mdatoms->typeA;
135 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
136 ewtab = fr->ic->tabq_coul_FDV0;
137 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
138 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
140 /* Setup water-specific parameters */
141 inr = nlist->iinr[0];
142 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
143 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
144 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
145 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
147 jq0 = _mm_set1_pd(charge[inr+0]);
148 jq1 = _mm_set1_pd(charge[inr+1]);
149 jq2 = _mm_set1_pd(charge[inr+2]);
150 vdwjidx0A = 2*vdwtype[inr+0];
151 qq00 = _mm_mul_pd(iq0,jq0);
152 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
153 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
154 qq01 = _mm_mul_pd(iq0,jq1);
155 qq02 = _mm_mul_pd(iq0,jq2);
156 qq10 = _mm_mul_pd(iq1,jq0);
157 qq11 = _mm_mul_pd(iq1,jq1);
158 qq12 = _mm_mul_pd(iq1,jq2);
159 qq20 = _mm_mul_pd(iq2,jq0);
160 qq21 = _mm_mul_pd(iq2,jq1);
161 qq22 = _mm_mul_pd(iq2,jq2);
163 /* Avoid stupid compiler warnings */
171 /* Start outer loop over neighborlists */
172 for(iidx=0; iidx<nri; iidx++)
174 /* Load shift vector for this list */
175 i_shift_offset = DIM*shiftidx[iidx];
177 /* Load limits for loop over neighbors */
178 j_index_start = jindex[iidx];
179 j_index_end = jindex[iidx+1];
181 /* Get outer coordinate index */
183 i_coord_offset = DIM*inr;
185 /* Load i particle coords and add shift vector */
186 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
187 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
189 fix0 = _mm_setzero_pd();
190 fiy0 = _mm_setzero_pd();
191 fiz0 = _mm_setzero_pd();
192 fix1 = _mm_setzero_pd();
193 fiy1 = _mm_setzero_pd();
194 fiz1 = _mm_setzero_pd();
195 fix2 = _mm_setzero_pd();
196 fiy2 = _mm_setzero_pd();
197 fiz2 = _mm_setzero_pd();
199 /* Reset potential sums */
200 velecsum = _mm_setzero_pd();
201 vvdwsum = _mm_setzero_pd();
203 /* Start inner kernel loop */
204 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
207 /* Get j neighbor index, and coordinate index */
210 j_coord_offsetA = DIM*jnrA;
211 j_coord_offsetB = DIM*jnrB;
213 /* load j atom coordinates */
214 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
215 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
217 /* Calculate displacement vector */
218 dx00 = _mm_sub_pd(ix0,jx0);
219 dy00 = _mm_sub_pd(iy0,jy0);
220 dz00 = _mm_sub_pd(iz0,jz0);
221 dx01 = _mm_sub_pd(ix0,jx1);
222 dy01 = _mm_sub_pd(iy0,jy1);
223 dz01 = _mm_sub_pd(iz0,jz1);
224 dx02 = _mm_sub_pd(ix0,jx2);
225 dy02 = _mm_sub_pd(iy0,jy2);
226 dz02 = _mm_sub_pd(iz0,jz2);
227 dx10 = _mm_sub_pd(ix1,jx0);
228 dy10 = _mm_sub_pd(iy1,jy0);
229 dz10 = _mm_sub_pd(iz1,jz0);
230 dx11 = _mm_sub_pd(ix1,jx1);
231 dy11 = _mm_sub_pd(iy1,jy1);
232 dz11 = _mm_sub_pd(iz1,jz1);
233 dx12 = _mm_sub_pd(ix1,jx2);
234 dy12 = _mm_sub_pd(iy1,jy2);
235 dz12 = _mm_sub_pd(iz1,jz2);
236 dx20 = _mm_sub_pd(ix2,jx0);
237 dy20 = _mm_sub_pd(iy2,jy0);
238 dz20 = _mm_sub_pd(iz2,jz0);
239 dx21 = _mm_sub_pd(ix2,jx1);
240 dy21 = _mm_sub_pd(iy2,jy1);
241 dz21 = _mm_sub_pd(iz2,jz1);
242 dx22 = _mm_sub_pd(ix2,jx2);
243 dy22 = _mm_sub_pd(iy2,jy2);
244 dz22 = _mm_sub_pd(iz2,jz2);
246 /* Calculate squared distance and things based on it */
247 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
248 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
249 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
250 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
251 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
252 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
253 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
254 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
255 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
257 rinv00 = gmx_mm_invsqrt_pd(rsq00);
258 rinv01 = gmx_mm_invsqrt_pd(rsq01);
259 rinv02 = gmx_mm_invsqrt_pd(rsq02);
260 rinv10 = gmx_mm_invsqrt_pd(rsq10);
261 rinv11 = gmx_mm_invsqrt_pd(rsq11);
262 rinv12 = gmx_mm_invsqrt_pd(rsq12);
263 rinv20 = gmx_mm_invsqrt_pd(rsq20);
264 rinv21 = gmx_mm_invsqrt_pd(rsq21);
265 rinv22 = gmx_mm_invsqrt_pd(rsq22);
267 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
268 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
269 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
270 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
271 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
272 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
273 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
274 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
275 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
277 fjx0 = _mm_setzero_pd();
278 fjy0 = _mm_setzero_pd();
279 fjz0 = _mm_setzero_pd();
280 fjx1 = _mm_setzero_pd();
281 fjy1 = _mm_setzero_pd();
282 fjz1 = _mm_setzero_pd();
283 fjx2 = _mm_setzero_pd();
284 fjy2 = _mm_setzero_pd();
285 fjz2 = _mm_setzero_pd();
287 /**************************
288 * CALCULATE INTERACTIONS *
289 **************************/
291 r00 = _mm_mul_pd(rsq00,rinv00);
293 /* EWALD ELECTROSTATICS */
295 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
296 ewrt = _mm_mul_pd(r00,ewtabscale);
297 ewitab = _mm_cvttpd_epi32(ewrt);
298 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
299 ewitab = _mm_slli_epi32(ewitab,2);
300 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
301 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
302 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
303 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
304 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
305 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
306 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
307 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
308 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
309 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
311 /* LENNARD-JONES DISPERSION/REPULSION */
313 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
314 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
315 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
316 vvdw = _mm_sub_pd( _mm_mul_pd(vvdw12,one_twelfth) , _mm_mul_pd(vvdw6,one_sixth) );
317 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
319 /* Update potential sum for this i atom from the interaction with this j atom. */
320 velecsum = _mm_add_pd(velecsum,velec);
321 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
323 fscal = _mm_add_pd(felec,fvdw);
325 /* Calculate temporary vectorial force */
326 tx = _mm_mul_pd(fscal,dx00);
327 ty = _mm_mul_pd(fscal,dy00);
328 tz = _mm_mul_pd(fscal,dz00);
330 /* Update vectorial force */
331 fix0 = _mm_add_pd(fix0,tx);
332 fiy0 = _mm_add_pd(fiy0,ty);
333 fiz0 = _mm_add_pd(fiz0,tz);
335 fjx0 = _mm_add_pd(fjx0,tx);
336 fjy0 = _mm_add_pd(fjy0,ty);
337 fjz0 = _mm_add_pd(fjz0,tz);
339 /**************************
340 * CALCULATE INTERACTIONS *
341 **************************/
343 r01 = _mm_mul_pd(rsq01,rinv01);
345 /* EWALD ELECTROSTATICS */
347 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
348 ewrt = _mm_mul_pd(r01,ewtabscale);
349 ewitab = _mm_cvttpd_epi32(ewrt);
350 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
351 ewitab = _mm_slli_epi32(ewitab,2);
352 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
353 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
354 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
355 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
356 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
357 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
358 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
359 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
360 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
361 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
363 /* Update potential sum for this i atom from the interaction with this j atom. */
364 velecsum = _mm_add_pd(velecsum,velec);
368 /* Calculate temporary vectorial force */
369 tx = _mm_mul_pd(fscal,dx01);
370 ty = _mm_mul_pd(fscal,dy01);
371 tz = _mm_mul_pd(fscal,dz01);
373 /* Update vectorial force */
374 fix0 = _mm_add_pd(fix0,tx);
375 fiy0 = _mm_add_pd(fiy0,ty);
376 fiz0 = _mm_add_pd(fiz0,tz);
378 fjx1 = _mm_add_pd(fjx1,tx);
379 fjy1 = _mm_add_pd(fjy1,ty);
380 fjz1 = _mm_add_pd(fjz1,tz);
382 /**************************
383 * CALCULATE INTERACTIONS *
384 **************************/
386 r02 = _mm_mul_pd(rsq02,rinv02);
388 /* EWALD ELECTROSTATICS */
390 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
391 ewrt = _mm_mul_pd(r02,ewtabscale);
392 ewitab = _mm_cvttpd_epi32(ewrt);
393 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
394 ewitab = _mm_slli_epi32(ewitab,2);
395 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
396 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
397 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
398 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
399 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
400 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
401 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
402 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
403 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
404 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
406 /* Update potential sum for this i atom from the interaction with this j atom. */
407 velecsum = _mm_add_pd(velecsum,velec);
411 /* Calculate temporary vectorial force */
412 tx = _mm_mul_pd(fscal,dx02);
413 ty = _mm_mul_pd(fscal,dy02);
414 tz = _mm_mul_pd(fscal,dz02);
416 /* Update vectorial force */
417 fix0 = _mm_add_pd(fix0,tx);
418 fiy0 = _mm_add_pd(fiy0,ty);
419 fiz0 = _mm_add_pd(fiz0,tz);
421 fjx2 = _mm_add_pd(fjx2,tx);
422 fjy2 = _mm_add_pd(fjy2,ty);
423 fjz2 = _mm_add_pd(fjz2,tz);
425 /**************************
426 * CALCULATE INTERACTIONS *
427 **************************/
429 r10 = _mm_mul_pd(rsq10,rinv10);
431 /* EWALD ELECTROSTATICS */
433 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
434 ewrt = _mm_mul_pd(r10,ewtabscale);
435 ewitab = _mm_cvttpd_epi32(ewrt);
436 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
437 ewitab = _mm_slli_epi32(ewitab,2);
438 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
439 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
440 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
441 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
442 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
443 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
444 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
445 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
446 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
447 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
449 /* Update potential sum for this i atom from the interaction with this j atom. */
450 velecsum = _mm_add_pd(velecsum,velec);
454 /* Calculate temporary vectorial force */
455 tx = _mm_mul_pd(fscal,dx10);
456 ty = _mm_mul_pd(fscal,dy10);
457 tz = _mm_mul_pd(fscal,dz10);
459 /* Update vectorial force */
460 fix1 = _mm_add_pd(fix1,tx);
461 fiy1 = _mm_add_pd(fiy1,ty);
462 fiz1 = _mm_add_pd(fiz1,tz);
464 fjx0 = _mm_add_pd(fjx0,tx);
465 fjy0 = _mm_add_pd(fjy0,ty);
466 fjz0 = _mm_add_pd(fjz0,tz);
468 /**************************
469 * CALCULATE INTERACTIONS *
470 **************************/
472 r11 = _mm_mul_pd(rsq11,rinv11);
474 /* EWALD ELECTROSTATICS */
476 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
477 ewrt = _mm_mul_pd(r11,ewtabscale);
478 ewitab = _mm_cvttpd_epi32(ewrt);
479 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
480 ewitab = _mm_slli_epi32(ewitab,2);
481 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
482 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
483 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
484 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
485 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
486 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
487 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
488 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
489 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
490 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
492 /* Update potential sum for this i atom from the interaction with this j atom. */
493 velecsum = _mm_add_pd(velecsum,velec);
497 /* Calculate temporary vectorial force */
498 tx = _mm_mul_pd(fscal,dx11);
499 ty = _mm_mul_pd(fscal,dy11);
500 tz = _mm_mul_pd(fscal,dz11);
502 /* Update vectorial force */
503 fix1 = _mm_add_pd(fix1,tx);
504 fiy1 = _mm_add_pd(fiy1,ty);
505 fiz1 = _mm_add_pd(fiz1,tz);
507 fjx1 = _mm_add_pd(fjx1,tx);
508 fjy1 = _mm_add_pd(fjy1,ty);
509 fjz1 = _mm_add_pd(fjz1,tz);
511 /**************************
512 * CALCULATE INTERACTIONS *
513 **************************/
515 r12 = _mm_mul_pd(rsq12,rinv12);
517 /* EWALD ELECTROSTATICS */
519 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
520 ewrt = _mm_mul_pd(r12,ewtabscale);
521 ewitab = _mm_cvttpd_epi32(ewrt);
522 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
523 ewitab = _mm_slli_epi32(ewitab,2);
524 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
525 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
526 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
527 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
528 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
529 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
530 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
531 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
532 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
533 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
535 /* Update potential sum for this i atom from the interaction with this j atom. */
536 velecsum = _mm_add_pd(velecsum,velec);
540 /* Calculate temporary vectorial force */
541 tx = _mm_mul_pd(fscal,dx12);
542 ty = _mm_mul_pd(fscal,dy12);
543 tz = _mm_mul_pd(fscal,dz12);
545 /* Update vectorial force */
546 fix1 = _mm_add_pd(fix1,tx);
547 fiy1 = _mm_add_pd(fiy1,ty);
548 fiz1 = _mm_add_pd(fiz1,tz);
550 fjx2 = _mm_add_pd(fjx2,tx);
551 fjy2 = _mm_add_pd(fjy2,ty);
552 fjz2 = _mm_add_pd(fjz2,tz);
554 /**************************
555 * CALCULATE INTERACTIONS *
556 **************************/
558 r20 = _mm_mul_pd(rsq20,rinv20);
560 /* EWALD ELECTROSTATICS */
562 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
563 ewrt = _mm_mul_pd(r20,ewtabscale);
564 ewitab = _mm_cvttpd_epi32(ewrt);
565 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
566 ewitab = _mm_slli_epi32(ewitab,2);
567 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
568 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
569 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
570 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
571 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
572 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
573 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
574 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
575 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
576 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
578 /* Update potential sum for this i atom from the interaction with this j atom. */
579 velecsum = _mm_add_pd(velecsum,velec);
583 /* Calculate temporary vectorial force */
584 tx = _mm_mul_pd(fscal,dx20);
585 ty = _mm_mul_pd(fscal,dy20);
586 tz = _mm_mul_pd(fscal,dz20);
588 /* Update vectorial force */
589 fix2 = _mm_add_pd(fix2,tx);
590 fiy2 = _mm_add_pd(fiy2,ty);
591 fiz2 = _mm_add_pd(fiz2,tz);
593 fjx0 = _mm_add_pd(fjx0,tx);
594 fjy0 = _mm_add_pd(fjy0,ty);
595 fjz0 = _mm_add_pd(fjz0,tz);
597 /**************************
598 * CALCULATE INTERACTIONS *
599 **************************/
601 r21 = _mm_mul_pd(rsq21,rinv21);
603 /* EWALD ELECTROSTATICS */
605 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
606 ewrt = _mm_mul_pd(r21,ewtabscale);
607 ewitab = _mm_cvttpd_epi32(ewrt);
608 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
609 ewitab = _mm_slli_epi32(ewitab,2);
610 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
611 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
612 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
613 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
614 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
615 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
616 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
617 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
618 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
619 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
621 /* Update potential sum for this i atom from the interaction with this j atom. */
622 velecsum = _mm_add_pd(velecsum,velec);
626 /* Calculate temporary vectorial force */
627 tx = _mm_mul_pd(fscal,dx21);
628 ty = _mm_mul_pd(fscal,dy21);
629 tz = _mm_mul_pd(fscal,dz21);
631 /* Update vectorial force */
632 fix2 = _mm_add_pd(fix2,tx);
633 fiy2 = _mm_add_pd(fiy2,ty);
634 fiz2 = _mm_add_pd(fiz2,tz);
636 fjx1 = _mm_add_pd(fjx1,tx);
637 fjy1 = _mm_add_pd(fjy1,ty);
638 fjz1 = _mm_add_pd(fjz1,tz);
640 /**************************
641 * CALCULATE INTERACTIONS *
642 **************************/
644 r22 = _mm_mul_pd(rsq22,rinv22);
646 /* EWALD ELECTROSTATICS */
648 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
649 ewrt = _mm_mul_pd(r22,ewtabscale);
650 ewitab = _mm_cvttpd_epi32(ewrt);
651 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
652 ewitab = _mm_slli_epi32(ewitab,2);
653 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
654 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
655 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
656 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
657 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
658 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
659 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
660 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
661 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
662 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
664 /* Update potential sum for this i atom from the interaction with this j atom. */
665 velecsum = _mm_add_pd(velecsum,velec);
669 /* Calculate temporary vectorial force */
670 tx = _mm_mul_pd(fscal,dx22);
671 ty = _mm_mul_pd(fscal,dy22);
672 tz = _mm_mul_pd(fscal,dz22);
674 /* Update vectorial force */
675 fix2 = _mm_add_pd(fix2,tx);
676 fiy2 = _mm_add_pd(fiy2,ty);
677 fiz2 = _mm_add_pd(fiz2,tz);
679 fjx2 = _mm_add_pd(fjx2,tx);
680 fjy2 = _mm_add_pd(fjy2,ty);
681 fjz2 = _mm_add_pd(fjz2,tz);
683 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
685 /* Inner loop uses 381 flops */
692 j_coord_offsetA = DIM*jnrA;
694 /* load j atom coordinates */
695 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
696 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
698 /* Calculate displacement vector */
699 dx00 = _mm_sub_pd(ix0,jx0);
700 dy00 = _mm_sub_pd(iy0,jy0);
701 dz00 = _mm_sub_pd(iz0,jz0);
702 dx01 = _mm_sub_pd(ix0,jx1);
703 dy01 = _mm_sub_pd(iy0,jy1);
704 dz01 = _mm_sub_pd(iz0,jz1);
705 dx02 = _mm_sub_pd(ix0,jx2);
706 dy02 = _mm_sub_pd(iy0,jy2);
707 dz02 = _mm_sub_pd(iz0,jz2);
708 dx10 = _mm_sub_pd(ix1,jx0);
709 dy10 = _mm_sub_pd(iy1,jy0);
710 dz10 = _mm_sub_pd(iz1,jz0);
711 dx11 = _mm_sub_pd(ix1,jx1);
712 dy11 = _mm_sub_pd(iy1,jy1);
713 dz11 = _mm_sub_pd(iz1,jz1);
714 dx12 = _mm_sub_pd(ix1,jx2);
715 dy12 = _mm_sub_pd(iy1,jy2);
716 dz12 = _mm_sub_pd(iz1,jz2);
717 dx20 = _mm_sub_pd(ix2,jx0);
718 dy20 = _mm_sub_pd(iy2,jy0);
719 dz20 = _mm_sub_pd(iz2,jz0);
720 dx21 = _mm_sub_pd(ix2,jx1);
721 dy21 = _mm_sub_pd(iy2,jy1);
722 dz21 = _mm_sub_pd(iz2,jz1);
723 dx22 = _mm_sub_pd(ix2,jx2);
724 dy22 = _mm_sub_pd(iy2,jy2);
725 dz22 = _mm_sub_pd(iz2,jz2);
727 /* Calculate squared distance and things based on it */
728 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
729 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
730 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
731 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
732 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
733 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
734 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
735 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
736 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
738 rinv00 = gmx_mm_invsqrt_pd(rsq00);
739 rinv01 = gmx_mm_invsqrt_pd(rsq01);
740 rinv02 = gmx_mm_invsqrt_pd(rsq02);
741 rinv10 = gmx_mm_invsqrt_pd(rsq10);
742 rinv11 = gmx_mm_invsqrt_pd(rsq11);
743 rinv12 = gmx_mm_invsqrt_pd(rsq12);
744 rinv20 = gmx_mm_invsqrt_pd(rsq20);
745 rinv21 = gmx_mm_invsqrt_pd(rsq21);
746 rinv22 = gmx_mm_invsqrt_pd(rsq22);
748 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
749 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
750 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
751 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
752 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
753 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
754 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
755 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
756 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
758 fjx0 = _mm_setzero_pd();
759 fjy0 = _mm_setzero_pd();
760 fjz0 = _mm_setzero_pd();
761 fjx1 = _mm_setzero_pd();
762 fjy1 = _mm_setzero_pd();
763 fjz1 = _mm_setzero_pd();
764 fjx2 = _mm_setzero_pd();
765 fjy2 = _mm_setzero_pd();
766 fjz2 = _mm_setzero_pd();
768 /**************************
769 * CALCULATE INTERACTIONS *
770 **************************/
772 r00 = _mm_mul_pd(rsq00,rinv00);
774 /* EWALD ELECTROSTATICS */
776 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
777 ewrt = _mm_mul_pd(r00,ewtabscale);
778 ewitab = _mm_cvttpd_epi32(ewrt);
779 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
780 ewitab = _mm_slli_epi32(ewitab,2);
781 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
782 ewtabD = _mm_setzero_pd();
783 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
784 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
785 ewtabFn = _mm_setzero_pd();
786 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
787 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
788 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
789 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
790 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
792 /* LENNARD-JONES DISPERSION/REPULSION */
794 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
795 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
796 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
797 vvdw = _mm_sub_pd( _mm_mul_pd(vvdw12,one_twelfth) , _mm_mul_pd(vvdw6,one_sixth) );
798 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
800 /* Update potential sum for this i atom from the interaction with this j atom. */
801 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
802 velecsum = _mm_add_pd(velecsum,velec);
803 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
804 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
806 fscal = _mm_add_pd(felec,fvdw);
808 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
810 /* Calculate temporary vectorial force */
811 tx = _mm_mul_pd(fscal,dx00);
812 ty = _mm_mul_pd(fscal,dy00);
813 tz = _mm_mul_pd(fscal,dz00);
815 /* Update vectorial force */
816 fix0 = _mm_add_pd(fix0,tx);
817 fiy0 = _mm_add_pd(fiy0,ty);
818 fiz0 = _mm_add_pd(fiz0,tz);
820 fjx0 = _mm_add_pd(fjx0,tx);
821 fjy0 = _mm_add_pd(fjy0,ty);
822 fjz0 = _mm_add_pd(fjz0,tz);
824 /**************************
825 * CALCULATE INTERACTIONS *
826 **************************/
828 r01 = _mm_mul_pd(rsq01,rinv01);
830 /* EWALD ELECTROSTATICS */
832 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
833 ewrt = _mm_mul_pd(r01,ewtabscale);
834 ewitab = _mm_cvttpd_epi32(ewrt);
835 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
836 ewitab = _mm_slli_epi32(ewitab,2);
837 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
838 ewtabD = _mm_setzero_pd();
839 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
840 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
841 ewtabFn = _mm_setzero_pd();
842 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
843 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
844 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
845 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
846 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
848 /* Update potential sum for this i atom from the interaction with this j atom. */
849 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
850 velecsum = _mm_add_pd(velecsum,velec);
854 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
856 /* Calculate temporary vectorial force */
857 tx = _mm_mul_pd(fscal,dx01);
858 ty = _mm_mul_pd(fscal,dy01);
859 tz = _mm_mul_pd(fscal,dz01);
861 /* Update vectorial force */
862 fix0 = _mm_add_pd(fix0,tx);
863 fiy0 = _mm_add_pd(fiy0,ty);
864 fiz0 = _mm_add_pd(fiz0,tz);
866 fjx1 = _mm_add_pd(fjx1,tx);
867 fjy1 = _mm_add_pd(fjy1,ty);
868 fjz1 = _mm_add_pd(fjz1,tz);
870 /**************************
871 * CALCULATE INTERACTIONS *
872 **************************/
874 r02 = _mm_mul_pd(rsq02,rinv02);
876 /* EWALD ELECTROSTATICS */
878 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
879 ewrt = _mm_mul_pd(r02,ewtabscale);
880 ewitab = _mm_cvttpd_epi32(ewrt);
881 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
882 ewitab = _mm_slli_epi32(ewitab,2);
883 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
884 ewtabD = _mm_setzero_pd();
885 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
886 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
887 ewtabFn = _mm_setzero_pd();
888 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
889 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
890 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
891 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
892 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
894 /* Update potential sum for this i atom from the interaction with this j atom. */
895 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
896 velecsum = _mm_add_pd(velecsum,velec);
900 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
902 /* Calculate temporary vectorial force */
903 tx = _mm_mul_pd(fscal,dx02);
904 ty = _mm_mul_pd(fscal,dy02);
905 tz = _mm_mul_pd(fscal,dz02);
907 /* Update vectorial force */
908 fix0 = _mm_add_pd(fix0,tx);
909 fiy0 = _mm_add_pd(fiy0,ty);
910 fiz0 = _mm_add_pd(fiz0,tz);
912 fjx2 = _mm_add_pd(fjx2,tx);
913 fjy2 = _mm_add_pd(fjy2,ty);
914 fjz2 = _mm_add_pd(fjz2,tz);
916 /**************************
917 * CALCULATE INTERACTIONS *
918 **************************/
920 r10 = _mm_mul_pd(rsq10,rinv10);
922 /* EWALD ELECTROSTATICS */
924 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
925 ewrt = _mm_mul_pd(r10,ewtabscale);
926 ewitab = _mm_cvttpd_epi32(ewrt);
927 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
928 ewitab = _mm_slli_epi32(ewitab,2);
929 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
930 ewtabD = _mm_setzero_pd();
931 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
932 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
933 ewtabFn = _mm_setzero_pd();
934 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
935 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
936 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
937 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
938 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
940 /* Update potential sum for this i atom from the interaction with this j atom. */
941 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
942 velecsum = _mm_add_pd(velecsum,velec);
946 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
948 /* Calculate temporary vectorial force */
949 tx = _mm_mul_pd(fscal,dx10);
950 ty = _mm_mul_pd(fscal,dy10);
951 tz = _mm_mul_pd(fscal,dz10);
953 /* Update vectorial force */
954 fix1 = _mm_add_pd(fix1,tx);
955 fiy1 = _mm_add_pd(fiy1,ty);
956 fiz1 = _mm_add_pd(fiz1,tz);
958 fjx0 = _mm_add_pd(fjx0,tx);
959 fjy0 = _mm_add_pd(fjy0,ty);
960 fjz0 = _mm_add_pd(fjz0,tz);
962 /**************************
963 * CALCULATE INTERACTIONS *
964 **************************/
966 r11 = _mm_mul_pd(rsq11,rinv11);
968 /* EWALD ELECTROSTATICS */
970 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
971 ewrt = _mm_mul_pd(r11,ewtabscale);
972 ewitab = _mm_cvttpd_epi32(ewrt);
973 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
974 ewitab = _mm_slli_epi32(ewitab,2);
975 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
976 ewtabD = _mm_setzero_pd();
977 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
978 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
979 ewtabFn = _mm_setzero_pd();
980 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
981 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
982 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
983 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
984 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
986 /* Update potential sum for this i atom from the interaction with this j atom. */
987 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
988 velecsum = _mm_add_pd(velecsum,velec);
992 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
994 /* Calculate temporary vectorial force */
995 tx = _mm_mul_pd(fscal,dx11);
996 ty = _mm_mul_pd(fscal,dy11);
997 tz = _mm_mul_pd(fscal,dz11);
999 /* Update vectorial force */
1000 fix1 = _mm_add_pd(fix1,tx);
1001 fiy1 = _mm_add_pd(fiy1,ty);
1002 fiz1 = _mm_add_pd(fiz1,tz);
1004 fjx1 = _mm_add_pd(fjx1,tx);
1005 fjy1 = _mm_add_pd(fjy1,ty);
1006 fjz1 = _mm_add_pd(fjz1,tz);
1008 /**************************
1009 * CALCULATE INTERACTIONS *
1010 **************************/
1012 r12 = _mm_mul_pd(rsq12,rinv12);
1014 /* EWALD ELECTROSTATICS */
1016 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1017 ewrt = _mm_mul_pd(r12,ewtabscale);
1018 ewitab = _mm_cvttpd_epi32(ewrt);
1019 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1020 ewitab = _mm_slli_epi32(ewitab,2);
1021 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1022 ewtabD = _mm_setzero_pd();
1023 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1024 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1025 ewtabFn = _mm_setzero_pd();
1026 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1027 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1028 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1029 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
1030 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1032 /* Update potential sum for this i atom from the interaction with this j atom. */
1033 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1034 velecsum = _mm_add_pd(velecsum,velec);
1038 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1040 /* Calculate temporary vectorial force */
1041 tx = _mm_mul_pd(fscal,dx12);
1042 ty = _mm_mul_pd(fscal,dy12);
1043 tz = _mm_mul_pd(fscal,dz12);
1045 /* Update vectorial force */
1046 fix1 = _mm_add_pd(fix1,tx);
1047 fiy1 = _mm_add_pd(fiy1,ty);
1048 fiz1 = _mm_add_pd(fiz1,tz);
1050 fjx2 = _mm_add_pd(fjx2,tx);
1051 fjy2 = _mm_add_pd(fjy2,ty);
1052 fjz2 = _mm_add_pd(fjz2,tz);
1054 /**************************
1055 * CALCULATE INTERACTIONS *
1056 **************************/
1058 r20 = _mm_mul_pd(rsq20,rinv20);
1060 /* EWALD ELECTROSTATICS */
1062 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1063 ewrt = _mm_mul_pd(r20,ewtabscale);
1064 ewitab = _mm_cvttpd_epi32(ewrt);
1065 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1066 ewitab = _mm_slli_epi32(ewitab,2);
1067 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1068 ewtabD = _mm_setzero_pd();
1069 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1070 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1071 ewtabFn = _mm_setzero_pd();
1072 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1073 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1074 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1075 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
1076 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1078 /* Update potential sum for this i atom from the interaction with this j atom. */
1079 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1080 velecsum = _mm_add_pd(velecsum,velec);
1084 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1086 /* Calculate temporary vectorial force */
1087 tx = _mm_mul_pd(fscal,dx20);
1088 ty = _mm_mul_pd(fscal,dy20);
1089 tz = _mm_mul_pd(fscal,dz20);
1091 /* Update vectorial force */
1092 fix2 = _mm_add_pd(fix2,tx);
1093 fiy2 = _mm_add_pd(fiy2,ty);
1094 fiz2 = _mm_add_pd(fiz2,tz);
1096 fjx0 = _mm_add_pd(fjx0,tx);
1097 fjy0 = _mm_add_pd(fjy0,ty);
1098 fjz0 = _mm_add_pd(fjz0,tz);
1100 /**************************
1101 * CALCULATE INTERACTIONS *
1102 **************************/
1104 r21 = _mm_mul_pd(rsq21,rinv21);
1106 /* EWALD ELECTROSTATICS */
1108 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1109 ewrt = _mm_mul_pd(r21,ewtabscale);
1110 ewitab = _mm_cvttpd_epi32(ewrt);
1111 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1112 ewitab = _mm_slli_epi32(ewitab,2);
1113 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1114 ewtabD = _mm_setzero_pd();
1115 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1116 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1117 ewtabFn = _mm_setzero_pd();
1118 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1119 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1120 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1121 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
1122 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1124 /* Update potential sum for this i atom from the interaction with this j atom. */
1125 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1126 velecsum = _mm_add_pd(velecsum,velec);
1130 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1132 /* Calculate temporary vectorial force */
1133 tx = _mm_mul_pd(fscal,dx21);
1134 ty = _mm_mul_pd(fscal,dy21);
1135 tz = _mm_mul_pd(fscal,dz21);
1137 /* Update vectorial force */
1138 fix2 = _mm_add_pd(fix2,tx);
1139 fiy2 = _mm_add_pd(fiy2,ty);
1140 fiz2 = _mm_add_pd(fiz2,tz);
1142 fjx1 = _mm_add_pd(fjx1,tx);
1143 fjy1 = _mm_add_pd(fjy1,ty);
1144 fjz1 = _mm_add_pd(fjz1,tz);
1146 /**************************
1147 * CALCULATE INTERACTIONS *
1148 **************************/
1150 r22 = _mm_mul_pd(rsq22,rinv22);
1152 /* EWALD ELECTROSTATICS */
1154 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1155 ewrt = _mm_mul_pd(r22,ewtabscale);
1156 ewitab = _mm_cvttpd_epi32(ewrt);
1157 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1158 ewitab = _mm_slli_epi32(ewitab,2);
1159 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1160 ewtabD = _mm_setzero_pd();
1161 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1162 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1163 ewtabFn = _mm_setzero_pd();
1164 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1165 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1166 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1167 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
1168 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1170 /* Update potential sum for this i atom from the interaction with this j atom. */
1171 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1172 velecsum = _mm_add_pd(velecsum,velec);
1176 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1178 /* Calculate temporary vectorial force */
1179 tx = _mm_mul_pd(fscal,dx22);
1180 ty = _mm_mul_pd(fscal,dy22);
1181 tz = _mm_mul_pd(fscal,dz22);
1183 /* Update vectorial force */
1184 fix2 = _mm_add_pd(fix2,tx);
1185 fiy2 = _mm_add_pd(fiy2,ty);
1186 fiz2 = _mm_add_pd(fiz2,tz);
1188 fjx2 = _mm_add_pd(fjx2,tx);
1189 fjy2 = _mm_add_pd(fjy2,ty);
1190 fjz2 = _mm_add_pd(fjz2,tz);
1192 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1194 /* Inner loop uses 381 flops */
1197 /* End of innermost loop */
1199 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1200 f+i_coord_offset,fshift+i_shift_offset);
1203 /* Update potential energies */
1204 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1205 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1207 /* Increment number of inner iterations */
1208 inneriter += j_index_end - j_index_start;
1210 /* Outer loop uses 20 flops */
1213 /* Increment number of outer iterations */
1216 /* Update outer/inner flops */
1218 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*381);
1221 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW3W3_F_sse4_1_double
1222 * Electrostatics interaction: Ewald
1223 * VdW interaction: LennardJones
1224 * Geometry: Water3-Water3
1225 * Calculate force/pot: Force
1228 nb_kernel_ElecEw_VdwLJ_GeomW3W3_F_sse4_1_double
1229 (t_nblist * gmx_restrict nlist,
1230 rvec * gmx_restrict xx,
1231 rvec * gmx_restrict ff,
1232 t_forcerec * gmx_restrict fr,
1233 t_mdatoms * gmx_restrict mdatoms,
1234 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1235 t_nrnb * gmx_restrict nrnb)
1237 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1238 * just 0 for non-waters.
1239 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
1240 * jnr indices corresponding to data put in the four positions in the SIMD register.
1242 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1243 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1245 int j_coord_offsetA,j_coord_offsetB;
1246 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1247 real rcutoff_scalar;
1248 real *shiftvec,*fshift,*x,*f;
1249 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1251 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1253 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1255 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1256 int vdwjidx0A,vdwjidx0B;
1257 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1258 int vdwjidx1A,vdwjidx1B;
1259 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1260 int vdwjidx2A,vdwjidx2B;
1261 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1262 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1263 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1264 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1265 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1266 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1267 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1268 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1269 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1270 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1271 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
1274 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1277 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
1278 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
1280 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1282 __m128d dummy_mask,cutoff_mask;
1283 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
1284 __m128d one = _mm_set1_pd(1.0);
1285 __m128d two = _mm_set1_pd(2.0);
1291 jindex = nlist->jindex;
1293 shiftidx = nlist->shift;
1295 shiftvec = fr->shift_vec[0];
1296 fshift = fr->fshift[0];
1297 facel = _mm_set1_pd(fr->epsfac);
1298 charge = mdatoms->chargeA;
1299 nvdwtype = fr->ntype;
1300 vdwparam = fr->nbfp;
1301 vdwtype = mdatoms->typeA;
1303 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
1304 ewtab = fr->ic->tabq_coul_F;
1305 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
1306 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
1308 /* Setup water-specific parameters */
1309 inr = nlist->iinr[0];
1310 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
1311 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
1312 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
1313 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1315 jq0 = _mm_set1_pd(charge[inr+0]);
1316 jq1 = _mm_set1_pd(charge[inr+1]);
1317 jq2 = _mm_set1_pd(charge[inr+2]);
1318 vdwjidx0A = 2*vdwtype[inr+0];
1319 qq00 = _mm_mul_pd(iq0,jq0);
1320 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
1321 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
1322 qq01 = _mm_mul_pd(iq0,jq1);
1323 qq02 = _mm_mul_pd(iq0,jq2);
1324 qq10 = _mm_mul_pd(iq1,jq0);
1325 qq11 = _mm_mul_pd(iq1,jq1);
1326 qq12 = _mm_mul_pd(iq1,jq2);
1327 qq20 = _mm_mul_pd(iq2,jq0);
1328 qq21 = _mm_mul_pd(iq2,jq1);
1329 qq22 = _mm_mul_pd(iq2,jq2);
1331 /* Avoid stupid compiler warnings */
1333 j_coord_offsetA = 0;
1334 j_coord_offsetB = 0;
1339 /* Start outer loop over neighborlists */
1340 for(iidx=0; iidx<nri; iidx++)
1342 /* Load shift vector for this list */
1343 i_shift_offset = DIM*shiftidx[iidx];
1345 /* Load limits for loop over neighbors */
1346 j_index_start = jindex[iidx];
1347 j_index_end = jindex[iidx+1];
1349 /* Get outer coordinate index */
1351 i_coord_offset = DIM*inr;
1353 /* Load i particle coords and add shift vector */
1354 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1355 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1357 fix0 = _mm_setzero_pd();
1358 fiy0 = _mm_setzero_pd();
1359 fiz0 = _mm_setzero_pd();
1360 fix1 = _mm_setzero_pd();
1361 fiy1 = _mm_setzero_pd();
1362 fiz1 = _mm_setzero_pd();
1363 fix2 = _mm_setzero_pd();
1364 fiy2 = _mm_setzero_pd();
1365 fiz2 = _mm_setzero_pd();
1367 /* Start inner kernel loop */
1368 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
1371 /* Get j neighbor index, and coordinate index */
1373 jnrB = jjnr[jidx+1];
1374 j_coord_offsetA = DIM*jnrA;
1375 j_coord_offsetB = DIM*jnrB;
1377 /* load j atom coordinates */
1378 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1379 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1381 /* Calculate displacement vector */
1382 dx00 = _mm_sub_pd(ix0,jx0);
1383 dy00 = _mm_sub_pd(iy0,jy0);
1384 dz00 = _mm_sub_pd(iz0,jz0);
1385 dx01 = _mm_sub_pd(ix0,jx1);
1386 dy01 = _mm_sub_pd(iy0,jy1);
1387 dz01 = _mm_sub_pd(iz0,jz1);
1388 dx02 = _mm_sub_pd(ix0,jx2);
1389 dy02 = _mm_sub_pd(iy0,jy2);
1390 dz02 = _mm_sub_pd(iz0,jz2);
1391 dx10 = _mm_sub_pd(ix1,jx0);
1392 dy10 = _mm_sub_pd(iy1,jy0);
1393 dz10 = _mm_sub_pd(iz1,jz0);
1394 dx11 = _mm_sub_pd(ix1,jx1);
1395 dy11 = _mm_sub_pd(iy1,jy1);
1396 dz11 = _mm_sub_pd(iz1,jz1);
1397 dx12 = _mm_sub_pd(ix1,jx2);
1398 dy12 = _mm_sub_pd(iy1,jy2);
1399 dz12 = _mm_sub_pd(iz1,jz2);
1400 dx20 = _mm_sub_pd(ix2,jx0);
1401 dy20 = _mm_sub_pd(iy2,jy0);
1402 dz20 = _mm_sub_pd(iz2,jz0);
1403 dx21 = _mm_sub_pd(ix2,jx1);
1404 dy21 = _mm_sub_pd(iy2,jy1);
1405 dz21 = _mm_sub_pd(iz2,jz1);
1406 dx22 = _mm_sub_pd(ix2,jx2);
1407 dy22 = _mm_sub_pd(iy2,jy2);
1408 dz22 = _mm_sub_pd(iz2,jz2);
1410 /* Calculate squared distance and things based on it */
1411 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1412 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1413 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1414 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1415 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1416 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1417 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1418 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1419 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1421 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1422 rinv01 = gmx_mm_invsqrt_pd(rsq01);
1423 rinv02 = gmx_mm_invsqrt_pd(rsq02);
1424 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1425 rinv11 = gmx_mm_invsqrt_pd(rsq11);
1426 rinv12 = gmx_mm_invsqrt_pd(rsq12);
1427 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1428 rinv21 = gmx_mm_invsqrt_pd(rsq21);
1429 rinv22 = gmx_mm_invsqrt_pd(rsq22);
1431 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1432 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1433 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1434 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1435 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1436 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1437 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1438 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1439 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1441 fjx0 = _mm_setzero_pd();
1442 fjy0 = _mm_setzero_pd();
1443 fjz0 = _mm_setzero_pd();
1444 fjx1 = _mm_setzero_pd();
1445 fjy1 = _mm_setzero_pd();
1446 fjz1 = _mm_setzero_pd();
1447 fjx2 = _mm_setzero_pd();
1448 fjy2 = _mm_setzero_pd();
1449 fjz2 = _mm_setzero_pd();
1451 /**************************
1452 * CALCULATE INTERACTIONS *
1453 **************************/
1455 r00 = _mm_mul_pd(rsq00,rinv00);
1457 /* EWALD ELECTROSTATICS */
1459 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1460 ewrt = _mm_mul_pd(r00,ewtabscale);
1461 ewitab = _mm_cvttpd_epi32(ewrt);
1462 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1463 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1465 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1466 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1468 /* LENNARD-JONES DISPERSION/REPULSION */
1470 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1471 fvdw = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1473 fscal = _mm_add_pd(felec,fvdw);
1475 /* Calculate temporary vectorial force */
1476 tx = _mm_mul_pd(fscal,dx00);
1477 ty = _mm_mul_pd(fscal,dy00);
1478 tz = _mm_mul_pd(fscal,dz00);
1480 /* Update vectorial force */
1481 fix0 = _mm_add_pd(fix0,tx);
1482 fiy0 = _mm_add_pd(fiy0,ty);
1483 fiz0 = _mm_add_pd(fiz0,tz);
1485 fjx0 = _mm_add_pd(fjx0,tx);
1486 fjy0 = _mm_add_pd(fjy0,ty);
1487 fjz0 = _mm_add_pd(fjz0,tz);
1489 /**************************
1490 * CALCULATE INTERACTIONS *
1491 **************************/
1493 r01 = _mm_mul_pd(rsq01,rinv01);
1495 /* EWALD ELECTROSTATICS */
1497 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1498 ewrt = _mm_mul_pd(r01,ewtabscale);
1499 ewitab = _mm_cvttpd_epi32(ewrt);
1500 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1501 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1503 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1504 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1508 /* Calculate temporary vectorial force */
1509 tx = _mm_mul_pd(fscal,dx01);
1510 ty = _mm_mul_pd(fscal,dy01);
1511 tz = _mm_mul_pd(fscal,dz01);
1513 /* Update vectorial force */
1514 fix0 = _mm_add_pd(fix0,tx);
1515 fiy0 = _mm_add_pd(fiy0,ty);
1516 fiz0 = _mm_add_pd(fiz0,tz);
1518 fjx1 = _mm_add_pd(fjx1,tx);
1519 fjy1 = _mm_add_pd(fjy1,ty);
1520 fjz1 = _mm_add_pd(fjz1,tz);
1522 /**************************
1523 * CALCULATE INTERACTIONS *
1524 **************************/
1526 r02 = _mm_mul_pd(rsq02,rinv02);
1528 /* EWALD ELECTROSTATICS */
1530 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1531 ewrt = _mm_mul_pd(r02,ewtabscale);
1532 ewitab = _mm_cvttpd_epi32(ewrt);
1533 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1534 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1536 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1537 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1541 /* Calculate temporary vectorial force */
1542 tx = _mm_mul_pd(fscal,dx02);
1543 ty = _mm_mul_pd(fscal,dy02);
1544 tz = _mm_mul_pd(fscal,dz02);
1546 /* Update vectorial force */
1547 fix0 = _mm_add_pd(fix0,tx);
1548 fiy0 = _mm_add_pd(fiy0,ty);
1549 fiz0 = _mm_add_pd(fiz0,tz);
1551 fjx2 = _mm_add_pd(fjx2,tx);
1552 fjy2 = _mm_add_pd(fjy2,ty);
1553 fjz2 = _mm_add_pd(fjz2,tz);
1555 /**************************
1556 * CALCULATE INTERACTIONS *
1557 **************************/
1559 r10 = _mm_mul_pd(rsq10,rinv10);
1561 /* EWALD ELECTROSTATICS */
1563 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1564 ewrt = _mm_mul_pd(r10,ewtabscale);
1565 ewitab = _mm_cvttpd_epi32(ewrt);
1566 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1567 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1569 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1570 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1574 /* Calculate temporary vectorial force */
1575 tx = _mm_mul_pd(fscal,dx10);
1576 ty = _mm_mul_pd(fscal,dy10);
1577 tz = _mm_mul_pd(fscal,dz10);
1579 /* Update vectorial force */
1580 fix1 = _mm_add_pd(fix1,tx);
1581 fiy1 = _mm_add_pd(fiy1,ty);
1582 fiz1 = _mm_add_pd(fiz1,tz);
1584 fjx0 = _mm_add_pd(fjx0,tx);
1585 fjy0 = _mm_add_pd(fjy0,ty);
1586 fjz0 = _mm_add_pd(fjz0,tz);
1588 /**************************
1589 * CALCULATE INTERACTIONS *
1590 **************************/
1592 r11 = _mm_mul_pd(rsq11,rinv11);
1594 /* EWALD ELECTROSTATICS */
1596 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1597 ewrt = _mm_mul_pd(r11,ewtabscale);
1598 ewitab = _mm_cvttpd_epi32(ewrt);
1599 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1600 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1602 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1603 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1607 /* Calculate temporary vectorial force */
1608 tx = _mm_mul_pd(fscal,dx11);
1609 ty = _mm_mul_pd(fscal,dy11);
1610 tz = _mm_mul_pd(fscal,dz11);
1612 /* Update vectorial force */
1613 fix1 = _mm_add_pd(fix1,tx);
1614 fiy1 = _mm_add_pd(fiy1,ty);
1615 fiz1 = _mm_add_pd(fiz1,tz);
1617 fjx1 = _mm_add_pd(fjx1,tx);
1618 fjy1 = _mm_add_pd(fjy1,ty);
1619 fjz1 = _mm_add_pd(fjz1,tz);
1621 /**************************
1622 * CALCULATE INTERACTIONS *
1623 **************************/
1625 r12 = _mm_mul_pd(rsq12,rinv12);
1627 /* EWALD ELECTROSTATICS */
1629 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1630 ewrt = _mm_mul_pd(r12,ewtabscale);
1631 ewitab = _mm_cvttpd_epi32(ewrt);
1632 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1633 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1635 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1636 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1640 /* Calculate temporary vectorial force */
1641 tx = _mm_mul_pd(fscal,dx12);
1642 ty = _mm_mul_pd(fscal,dy12);
1643 tz = _mm_mul_pd(fscal,dz12);
1645 /* Update vectorial force */
1646 fix1 = _mm_add_pd(fix1,tx);
1647 fiy1 = _mm_add_pd(fiy1,ty);
1648 fiz1 = _mm_add_pd(fiz1,tz);
1650 fjx2 = _mm_add_pd(fjx2,tx);
1651 fjy2 = _mm_add_pd(fjy2,ty);
1652 fjz2 = _mm_add_pd(fjz2,tz);
1654 /**************************
1655 * CALCULATE INTERACTIONS *
1656 **************************/
1658 r20 = _mm_mul_pd(rsq20,rinv20);
1660 /* EWALD ELECTROSTATICS */
1662 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1663 ewrt = _mm_mul_pd(r20,ewtabscale);
1664 ewitab = _mm_cvttpd_epi32(ewrt);
1665 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1666 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1668 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1669 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1673 /* Calculate temporary vectorial force */
1674 tx = _mm_mul_pd(fscal,dx20);
1675 ty = _mm_mul_pd(fscal,dy20);
1676 tz = _mm_mul_pd(fscal,dz20);
1678 /* Update vectorial force */
1679 fix2 = _mm_add_pd(fix2,tx);
1680 fiy2 = _mm_add_pd(fiy2,ty);
1681 fiz2 = _mm_add_pd(fiz2,tz);
1683 fjx0 = _mm_add_pd(fjx0,tx);
1684 fjy0 = _mm_add_pd(fjy0,ty);
1685 fjz0 = _mm_add_pd(fjz0,tz);
1687 /**************************
1688 * CALCULATE INTERACTIONS *
1689 **************************/
1691 r21 = _mm_mul_pd(rsq21,rinv21);
1693 /* EWALD ELECTROSTATICS */
1695 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1696 ewrt = _mm_mul_pd(r21,ewtabscale);
1697 ewitab = _mm_cvttpd_epi32(ewrt);
1698 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1699 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1701 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1702 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1706 /* Calculate temporary vectorial force */
1707 tx = _mm_mul_pd(fscal,dx21);
1708 ty = _mm_mul_pd(fscal,dy21);
1709 tz = _mm_mul_pd(fscal,dz21);
1711 /* Update vectorial force */
1712 fix2 = _mm_add_pd(fix2,tx);
1713 fiy2 = _mm_add_pd(fiy2,ty);
1714 fiz2 = _mm_add_pd(fiz2,tz);
1716 fjx1 = _mm_add_pd(fjx1,tx);
1717 fjy1 = _mm_add_pd(fjy1,ty);
1718 fjz1 = _mm_add_pd(fjz1,tz);
1720 /**************************
1721 * CALCULATE INTERACTIONS *
1722 **************************/
1724 r22 = _mm_mul_pd(rsq22,rinv22);
1726 /* EWALD ELECTROSTATICS */
1728 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1729 ewrt = _mm_mul_pd(r22,ewtabscale);
1730 ewitab = _mm_cvttpd_epi32(ewrt);
1731 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1732 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1734 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1735 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1739 /* Calculate temporary vectorial force */
1740 tx = _mm_mul_pd(fscal,dx22);
1741 ty = _mm_mul_pd(fscal,dy22);
1742 tz = _mm_mul_pd(fscal,dz22);
1744 /* Update vectorial force */
1745 fix2 = _mm_add_pd(fix2,tx);
1746 fiy2 = _mm_add_pd(fiy2,ty);
1747 fiz2 = _mm_add_pd(fiz2,tz);
1749 fjx2 = _mm_add_pd(fjx2,tx);
1750 fjy2 = _mm_add_pd(fjy2,ty);
1751 fjz2 = _mm_add_pd(fjz2,tz);
1753 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1755 /* Inner loop uses 331 flops */
1758 if(jidx<j_index_end)
1762 j_coord_offsetA = DIM*jnrA;
1764 /* load j atom coordinates */
1765 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1766 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1768 /* Calculate displacement vector */
1769 dx00 = _mm_sub_pd(ix0,jx0);
1770 dy00 = _mm_sub_pd(iy0,jy0);
1771 dz00 = _mm_sub_pd(iz0,jz0);
1772 dx01 = _mm_sub_pd(ix0,jx1);
1773 dy01 = _mm_sub_pd(iy0,jy1);
1774 dz01 = _mm_sub_pd(iz0,jz1);
1775 dx02 = _mm_sub_pd(ix0,jx2);
1776 dy02 = _mm_sub_pd(iy0,jy2);
1777 dz02 = _mm_sub_pd(iz0,jz2);
1778 dx10 = _mm_sub_pd(ix1,jx0);
1779 dy10 = _mm_sub_pd(iy1,jy0);
1780 dz10 = _mm_sub_pd(iz1,jz0);
1781 dx11 = _mm_sub_pd(ix1,jx1);
1782 dy11 = _mm_sub_pd(iy1,jy1);
1783 dz11 = _mm_sub_pd(iz1,jz1);
1784 dx12 = _mm_sub_pd(ix1,jx2);
1785 dy12 = _mm_sub_pd(iy1,jy2);
1786 dz12 = _mm_sub_pd(iz1,jz2);
1787 dx20 = _mm_sub_pd(ix2,jx0);
1788 dy20 = _mm_sub_pd(iy2,jy0);
1789 dz20 = _mm_sub_pd(iz2,jz0);
1790 dx21 = _mm_sub_pd(ix2,jx1);
1791 dy21 = _mm_sub_pd(iy2,jy1);
1792 dz21 = _mm_sub_pd(iz2,jz1);
1793 dx22 = _mm_sub_pd(ix2,jx2);
1794 dy22 = _mm_sub_pd(iy2,jy2);
1795 dz22 = _mm_sub_pd(iz2,jz2);
1797 /* Calculate squared distance and things based on it */
1798 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1799 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1800 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1801 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1802 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1803 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1804 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1805 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1806 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1808 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1809 rinv01 = gmx_mm_invsqrt_pd(rsq01);
1810 rinv02 = gmx_mm_invsqrt_pd(rsq02);
1811 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1812 rinv11 = gmx_mm_invsqrt_pd(rsq11);
1813 rinv12 = gmx_mm_invsqrt_pd(rsq12);
1814 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1815 rinv21 = gmx_mm_invsqrt_pd(rsq21);
1816 rinv22 = gmx_mm_invsqrt_pd(rsq22);
1818 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1819 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1820 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1821 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1822 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1823 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1824 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1825 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1826 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1828 fjx0 = _mm_setzero_pd();
1829 fjy0 = _mm_setzero_pd();
1830 fjz0 = _mm_setzero_pd();
1831 fjx1 = _mm_setzero_pd();
1832 fjy1 = _mm_setzero_pd();
1833 fjz1 = _mm_setzero_pd();
1834 fjx2 = _mm_setzero_pd();
1835 fjy2 = _mm_setzero_pd();
1836 fjz2 = _mm_setzero_pd();
1838 /**************************
1839 * CALCULATE INTERACTIONS *
1840 **************************/
1842 r00 = _mm_mul_pd(rsq00,rinv00);
1844 /* EWALD ELECTROSTATICS */
1846 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1847 ewrt = _mm_mul_pd(r00,ewtabscale);
1848 ewitab = _mm_cvttpd_epi32(ewrt);
1849 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1850 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1851 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1852 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1854 /* LENNARD-JONES DISPERSION/REPULSION */
1856 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1857 fvdw = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1859 fscal = _mm_add_pd(felec,fvdw);
1861 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1863 /* Calculate temporary vectorial force */
1864 tx = _mm_mul_pd(fscal,dx00);
1865 ty = _mm_mul_pd(fscal,dy00);
1866 tz = _mm_mul_pd(fscal,dz00);
1868 /* Update vectorial force */
1869 fix0 = _mm_add_pd(fix0,tx);
1870 fiy0 = _mm_add_pd(fiy0,ty);
1871 fiz0 = _mm_add_pd(fiz0,tz);
1873 fjx0 = _mm_add_pd(fjx0,tx);
1874 fjy0 = _mm_add_pd(fjy0,ty);
1875 fjz0 = _mm_add_pd(fjz0,tz);
1877 /**************************
1878 * CALCULATE INTERACTIONS *
1879 **************************/
1881 r01 = _mm_mul_pd(rsq01,rinv01);
1883 /* EWALD ELECTROSTATICS */
1885 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1886 ewrt = _mm_mul_pd(r01,ewtabscale);
1887 ewitab = _mm_cvttpd_epi32(ewrt);
1888 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1889 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1890 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1891 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1895 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1897 /* Calculate temporary vectorial force */
1898 tx = _mm_mul_pd(fscal,dx01);
1899 ty = _mm_mul_pd(fscal,dy01);
1900 tz = _mm_mul_pd(fscal,dz01);
1902 /* Update vectorial force */
1903 fix0 = _mm_add_pd(fix0,tx);
1904 fiy0 = _mm_add_pd(fiy0,ty);
1905 fiz0 = _mm_add_pd(fiz0,tz);
1907 fjx1 = _mm_add_pd(fjx1,tx);
1908 fjy1 = _mm_add_pd(fjy1,ty);
1909 fjz1 = _mm_add_pd(fjz1,tz);
1911 /**************************
1912 * CALCULATE INTERACTIONS *
1913 **************************/
1915 r02 = _mm_mul_pd(rsq02,rinv02);
1917 /* EWALD ELECTROSTATICS */
1919 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1920 ewrt = _mm_mul_pd(r02,ewtabscale);
1921 ewitab = _mm_cvttpd_epi32(ewrt);
1922 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1923 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1924 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1925 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1929 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1931 /* Calculate temporary vectorial force */
1932 tx = _mm_mul_pd(fscal,dx02);
1933 ty = _mm_mul_pd(fscal,dy02);
1934 tz = _mm_mul_pd(fscal,dz02);
1936 /* Update vectorial force */
1937 fix0 = _mm_add_pd(fix0,tx);
1938 fiy0 = _mm_add_pd(fiy0,ty);
1939 fiz0 = _mm_add_pd(fiz0,tz);
1941 fjx2 = _mm_add_pd(fjx2,tx);
1942 fjy2 = _mm_add_pd(fjy2,ty);
1943 fjz2 = _mm_add_pd(fjz2,tz);
1945 /**************************
1946 * CALCULATE INTERACTIONS *
1947 **************************/
1949 r10 = _mm_mul_pd(rsq10,rinv10);
1951 /* EWALD ELECTROSTATICS */
1953 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1954 ewrt = _mm_mul_pd(r10,ewtabscale);
1955 ewitab = _mm_cvttpd_epi32(ewrt);
1956 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1957 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1958 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1959 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1963 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1965 /* Calculate temporary vectorial force */
1966 tx = _mm_mul_pd(fscal,dx10);
1967 ty = _mm_mul_pd(fscal,dy10);
1968 tz = _mm_mul_pd(fscal,dz10);
1970 /* Update vectorial force */
1971 fix1 = _mm_add_pd(fix1,tx);
1972 fiy1 = _mm_add_pd(fiy1,ty);
1973 fiz1 = _mm_add_pd(fiz1,tz);
1975 fjx0 = _mm_add_pd(fjx0,tx);
1976 fjy0 = _mm_add_pd(fjy0,ty);
1977 fjz0 = _mm_add_pd(fjz0,tz);
1979 /**************************
1980 * CALCULATE INTERACTIONS *
1981 **************************/
1983 r11 = _mm_mul_pd(rsq11,rinv11);
1985 /* EWALD ELECTROSTATICS */
1987 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1988 ewrt = _mm_mul_pd(r11,ewtabscale);
1989 ewitab = _mm_cvttpd_epi32(ewrt);
1990 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
1991 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1992 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1993 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1997 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1999 /* Calculate temporary vectorial force */
2000 tx = _mm_mul_pd(fscal,dx11);
2001 ty = _mm_mul_pd(fscal,dy11);
2002 tz = _mm_mul_pd(fscal,dz11);
2004 /* Update vectorial force */
2005 fix1 = _mm_add_pd(fix1,tx);
2006 fiy1 = _mm_add_pd(fiy1,ty);
2007 fiz1 = _mm_add_pd(fiz1,tz);
2009 fjx1 = _mm_add_pd(fjx1,tx);
2010 fjy1 = _mm_add_pd(fjy1,ty);
2011 fjz1 = _mm_add_pd(fjz1,tz);
2013 /**************************
2014 * CALCULATE INTERACTIONS *
2015 **************************/
2017 r12 = _mm_mul_pd(rsq12,rinv12);
2019 /* EWALD ELECTROSTATICS */
2021 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2022 ewrt = _mm_mul_pd(r12,ewtabscale);
2023 ewitab = _mm_cvttpd_epi32(ewrt);
2024 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
2025 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2026 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2027 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
2031 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2033 /* Calculate temporary vectorial force */
2034 tx = _mm_mul_pd(fscal,dx12);
2035 ty = _mm_mul_pd(fscal,dy12);
2036 tz = _mm_mul_pd(fscal,dz12);
2038 /* Update vectorial force */
2039 fix1 = _mm_add_pd(fix1,tx);
2040 fiy1 = _mm_add_pd(fiy1,ty);
2041 fiz1 = _mm_add_pd(fiz1,tz);
2043 fjx2 = _mm_add_pd(fjx2,tx);
2044 fjy2 = _mm_add_pd(fjy2,ty);
2045 fjz2 = _mm_add_pd(fjz2,tz);
2047 /**************************
2048 * CALCULATE INTERACTIONS *
2049 **************************/
2051 r20 = _mm_mul_pd(rsq20,rinv20);
2053 /* EWALD ELECTROSTATICS */
2055 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2056 ewrt = _mm_mul_pd(r20,ewtabscale);
2057 ewitab = _mm_cvttpd_epi32(ewrt);
2058 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
2059 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2060 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2061 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
2065 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2067 /* Calculate temporary vectorial force */
2068 tx = _mm_mul_pd(fscal,dx20);
2069 ty = _mm_mul_pd(fscal,dy20);
2070 tz = _mm_mul_pd(fscal,dz20);
2072 /* Update vectorial force */
2073 fix2 = _mm_add_pd(fix2,tx);
2074 fiy2 = _mm_add_pd(fiy2,ty);
2075 fiz2 = _mm_add_pd(fiz2,tz);
2077 fjx0 = _mm_add_pd(fjx0,tx);
2078 fjy0 = _mm_add_pd(fjy0,ty);
2079 fjz0 = _mm_add_pd(fjz0,tz);
2081 /**************************
2082 * CALCULATE INTERACTIONS *
2083 **************************/
2085 r21 = _mm_mul_pd(rsq21,rinv21);
2087 /* EWALD ELECTROSTATICS */
2089 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2090 ewrt = _mm_mul_pd(r21,ewtabscale);
2091 ewitab = _mm_cvttpd_epi32(ewrt);
2092 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
2093 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2094 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2095 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
2099 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2101 /* Calculate temporary vectorial force */
2102 tx = _mm_mul_pd(fscal,dx21);
2103 ty = _mm_mul_pd(fscal,dy21);
2104 tz = _mm_mul_pd(fscal,dz21);
2106 /* Update vectorial force */
2107 fix2 = _mm_add_pd(fix2,tx);
2108 fiy2 = _mm_add_pd(fiy2,ty);
2109 fiz2 = _mm_add_pd(fiz2,tz);
2111 fjx1 = _mm_add_pd(fjx1,tx);
2112 fjy1 = _mm_add_pd(fjy1,ty);
2113 fjz1 = _mm_add_pd(fjz1,tz);
2115 /**************************
2116 * CALCULATE INTERACTIONS *
2117 **************************/
2119 r22 = _mm_mul_pd(rsq22,rinv22);
2121 /* EWALD ELECTROSTATICS */
2123 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2124 ewrt = _mm_mul_pd(r22,ewtabscale);
2125 ewitab = _mm_cvttpd_epi32(ewrt);
2126 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
2127 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2128 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2129 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
2133 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2135 /* Calculate temporary vectorial force */
2136 tx = _mm_mul_pd(fscal,dx22);
2137 ty = _mm_mul_pd(fscal,dy22);
2138 tz = _mm_mul_pd(fscal,dz22);
2140 /* Update vectorial force */
2141 fix2 = _mm_add_pd(fix2,tx);
2142 fiy2 = _mm_add_pd(fiy2,ty);
2143 fiz2 = _mm_add_pd(fiz2,tz);
2145 fjx2 = _mm_add_pd(fjx2,tx);
2146 fjy2 = _mm_add_pd(fjy2,ty);
2147 fjz2 = _mm_add_pd(fjz2,tz);
2149 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2151 /* Inner loop uses 331 flops */
2154 /* End of innermost loop */
2156 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2157 f+i_coord_offset,fshift+i_shift_offset);
2159 /* Increment number of inner iterations */
2160 inneriter += j_index_end - j_index_start;
2162 /* Outer loop uses 18 flops */
2165 /* Increment number of outer iterations */
2168 /* Update outer/inner flops */
2170 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*331);