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36 * Note: this file was generated by the GROMACS sse4_1_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse4_1_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_VF_sse4_1_double
51 * Electrostatics interaction: Coulomb
52 * VdW interaction: CubicSplineTable
53 * Geometry: Water4-Water4
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_VF_sse4_1_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
82 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
84 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
86 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
87 int vdwjidx0A,vdwjidx0B;
88 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
89 int vdwjidx1A,vdwjidx1B;
90 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
91 int vdwjidx2A,vdwjidx2B;
92 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
93 int vdwjidx3A,vdwjidx3B;
94 __m128d jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
95 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
96 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
97 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
98 __m128d dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
99 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
100 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
101 __m128d dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
102 __m128d dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
103 __m128d dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
104 __m128d dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
105 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
108 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
111 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
112 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
114 __m128i ifour = _mm_set1_epi32(4);
115 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
117 __m128d dummy_mask,cutoff_mask;
118 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
119 __m128d one = _mm_set1_pd(1.0);
120 __m128d two = _mm_set1_pd(2.0);
126 jindex = nlist->jindex;
128 shiftidx = nlist->shift;
130 shiftvec = fr->shift_vec[0];
131 fshift = fr->fshift[0];
132 facel = _mm_set1_pd(fr->ic->epsfac);
133 charge = mdatoms->chargeA;
134 nvdwtype = fr->ntype;
136 vdwtype = mdatoms->typeA;
138 vftab = kernel_data->table_vdw->data;
139 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
141 /* Setup water-specific parameters */
142 inr = nlist->iinr[0];
143 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
144 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
145 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
146 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
148 jq1 = _mm_set1_pd(charge[inr+1]);
149 jq2 = _mm_set1_pd(charge[inr+2]);
150 jq3 = _mm_set1_pd(charge[inr+3]);
151 vdwjidx0A = 2*vdwtype[inr+0];
152 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
153 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
154 qq11 = _mm_mul_pd(iq1,jq1);
155 qq12 = _mm_mul_pd(iq1,jq2);
156 qq13 = _mm_mul_pd(iq1,jq3);
157 qq21 = _mm_mul_pd(iq2,jq1);
158 qq22 = _mm_mul_pd(iq2,jq2);
159 qq23 = _mm_mul_pd(iq2,jq3);
160 qq31 = _mm_mul_pd(iq3,jq1);
161 qq32 = _mm_mul_pd(iq3,jq2);
162 qq33 = _mm_mul_pd(iq3,jq3);
164 /* Avoid stupid compiler warnings */
172 /* Start outer loop over neighborlists */
173 for(iidx=0; iidx<nri; iidx++)
175 /* Load shift vector for this list */
176 i_shift_offset = DIM*shiftidx[iidx];
178 /* Load limits for loop over neighbors */
179 j_index_start = jindex[iidx];
180 j_index_end = jindex[iidx+1];
182 /* Get outer coordinate index */
184 i_coord_offset = DIM*inr;
186 /* Load i particle coords and add shift vector */
187 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
188 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
190 fix0 = _mm_setzero_pd();
191 fiy0 = _mm_setzero_pd();
192 fiz0 = _mm_setzero_pd();
193 fix1 = _mm_setzero_pd();
194 fiy1 = _mm_setzero_pd();
195 fiz1 = _mm_setzero_pd();
196 fix2 = _mm_setzero_pd();
197 fiy2 = _mm_setzero_pd();
198 fiz2 = _mm_setzero_pd();
199 fix3 = _mm_setzero_pd();
200 fiy3 = _mm_setzero_pd();
201 fiz3 = _mm_setzero_pd();
203 /* Reset potential sums */
204 velecsum = _mm_setzero_pd();
205 vvdwsum = _mm_setzero_pd();
207 /* Start inner kernel loop */
208 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
211 /* Get j neighbor index, and coordinate index */
214 j_coord_offsetA = DIM*jnrA;
215 j_coord_offsetB = DIM*jnrB;
217 /* load j atom coordinates */
218 gmx_mm_load_4rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
219 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
220 &jy2,&jz2,&jx3,&jy3,&jz3);
222 /* Calculate displacement vector */
223 dx00 = _mm_sub_pd(ix0,jx0);
224 dy00 = _mm_sub_pd(iy0,jy0);
225 dz00 = _mm_sub_pd(iz0,jz0);
226 dx11 = _mm_sub_pd(ix1,jx1);
227 dy11 = _mm_sub_pd(iy1,jy1);
228 dz11 = _mm_sub_pd(iz1,jz1);
229 dx12 = _mm_sub_pd(ix1,jx2);
230 dy12 = _mm_sub_pd(iy1,jy2);
231 dz12 = _mm_sub_pd(iz1,jz2);
232 dx13 = _mm_sub_pd(ix1,jx3);
233 dy13 = _mm_sub_pd(iy1,jy3);
234 dz13 = _mm_sub_pd(iz1,jz3);
235 dx21 = _mm_sub_pd(ix2,jx1);
236 dy21 = _mm_sub_pd(iy2,jy1);
237 dz21 = _mm_sub_pd(iz2,jz1);
238 dx22 = _mm_sub_pd(ix2,jx2);
239 dy22 = _mm_sub_pd(iy2,jy2);
240 dz22 = _mm_sub_pd(iz2,jz2);
241 dx23 = _mm_sub_pd(ix2,jx3);
242 dy23 = _mm_sub_pd(iy2,jy3);
243 dz23 = _mm_sub_pd(iz2,jz3);
244 dx31 = _mm_sub_pd(ix3,jx1);
245 dy31 = _mm_sub_pd(iy3,jy1);
246 dz31 = _mm_sub_pd(iz3,jz1);
247 dx32 = _mm_sub_pd(ix3,jx2);
248 dy32 = _mm_sub_pd(iy3,jy2);
249 dz32 = _mm_sub_pd(iz3,jz2);
250 dx33 = _mm_sub_pd(ix3,jx3);
251 dy33 = _mm_sub_pd(iy3,jy3);
252 dz33 = _mm_sub_pd(iz3,jz3);
254 /* Calculate squared distance and things based on it */
255 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
256 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
257 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
258 rsq13 = gmx_mm_calc_rsq_pd(dx13,dy13,dz13);
259 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
260 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
261 rsq23 = gmx_mm_calc_rsq_pd(dx23,dy23,dz23);
262 rsq31 = gmx_mm_calc_rsq_pd(dx31,dy31,dz31);
263 rsq32 = gmx_mm_calc_rsq_pd(dx32,dy32,dz32);
264 rsq33 = gmx_mm_calc_rsq_pd(dx33,dy33,dz33);
266 rinv00 = sse41_invsqrt_d(rsq00);
267 rinv11 = sse41_invsqrt_d(rsq11);
268 rinv12 = sse41_invsqrt_d(rsq12);
269 rinv13 = sse41_invsqrt_d(rsq13);
270 rinv21 = sse41_invsqrt_d(rsq21);
271 rinv22 = sse41_invsqrt_d(rsq22);
272 rinv23 = sse41_invsqrt_d(rsq23);
273 rinv31 = sse41_invsqrt_d(rsq31);
274 rinv32 = sse41_invsqrt_d(rsq32);
275 rinv33 = sse41_invsqrt_d(rsq33);
277 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
278 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
279 rinvsq13 = _mm_mul_pd(rinv13,rinv13);
280 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
281 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
282 rinvsq23 = _mm_mul_pd(rinv23,rinv23);
283 rinvsq31 = _mm_mul_pd(rinv31,rinv31);
284 rinvsq32 = _mm_mul_pd(rinv32,rinv32);
285 rinvsq33 = _mm_mul_pd(rinv33,rinv33);
287 fjx0 = _mm_setzero_pd();
288 fjy0 = _mm_setzero_pd();
289 fjz0 = _mm_setzero_pd();
290 fjx1 = _mm_setzero_pd();
291 fjy1 = _mm_setzero_pd();
292 fjz1 = _mm_setzero_pd();
293 fjx2 = _mm_setzero_pd();
294 fjy2 = _mm_setzero_pd();
295 fjz2 = _mm_setzero_pd();
296 fjx3 = _mm_setzero_pd();
297 fjy3 = _mm_setzero_pd();
298 fjz3 = _mm_setzero_pd();
300 /**************************
301 * CALCULATE INTERACTIONS *
302 **************************/
304 r00 = _mm_mul_pd(rsq00,rinv00);
306 /* Calculate table index by multiplying r with table scale and truncate to integer */
307 rt = _mm_mul_pd(r00,vftabscale);
308 vfitab = _mm_cvttpd_epi32(rt);
309 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
310 vfitab = _mm_slli_epi32(vfitab,3);
312 /* CUBIC SPLINE TABLE DISPERSION */
313 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
314 F = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
315 GMX_MM_TRANSPOSE2_PD(Y,F);
316 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
317 H = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
318 GMX_MM_TRANSPOSE2_PD(G,H);
319 Heps = _mm_mul_pd(vfeps,H);
320 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
321 VV = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
322 vvdw6 = _mm_mul_pd(c6_00,VV);
323 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
324 fvdw6 = _mm_mul_pd(c6_00,FF);
326 /* CUBIC SPLINE TABLE REPULSION */
327 vfitab = _mm_add_epi32(vfitab,ifour);
328 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
329 F = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
330 GMX_MM_TRANSPOSE2_PD(Y,F);
331 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
332 H = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
333 GMX_MM_TRANSPOSE2_PD(G,H);
334 Heps = _mm_mul_pd(vfeps,H);
335 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
336 VV = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
337 vvdw12 = _mm_mul_pd(c12_00,VV);
338 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
339 fvdw12 = _mm_mul_pd(c12_00,FF);
340 vvdw = _mm_add_pd(vvdw12,vvdw6);
341 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
343 /* Update potential sum for this i atom from the interaction with this j atom. */
344 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
348 /* Calculate temporary vectorial force */
349 tx = _mm_mul_pd(fscal,dx00);
350 ty = _mm_mul_pd(fscal,dy00);
351 tz = _mm_mul_pd(fscal,dz00);
353 /* Update vectorial force */
354 fix0 = _mm_add_pd(fix0,tx);
355 fiy0 = _mm_add_pd(fiy0,ty);
356 fiz0 = _mm_add_pd(fiz0,tz);
358 fjx0 = _mm_add_pd(fjx0,tx);
359 fjy0 = _mm_add_pd(fjy0,ty);
360 fjz0 = _mm_add_pd(fjz0,tz);
362 /**************************
363 * CALCULATE INTERACTIONS *
364 **************************/
366 /* COULOMB ELECTROSTATICS */
367 velec = _mm_mul_pd(qq11,rinv11);
368 felec = _mm_mul_pd(velec,rinvsq11);
370 /* Update potential sum for this i atom from the interaction with this j atom. */
371 velecsum = _mm_add_pd(velecsum,velec);
375 /* Calculate temporary vectorial force */
376 tx = _mm_mul_pd(fscal,dx11);
377 ty = _mm_mul_pd(fscal,dy11);
378 tz = _mm_mul_pd(fscal,dz11);
380 /* Update vectorial force */
381 fix1 = _mm_add_pd(fix1,tx);
382 fiy1 = _mm_add_pd(fiy1,ty);
383 fiz1 = _mm_add_pd(fiz1,tz);
385 fjx1 = _mm_add_pd(fjx1,tx);
386 fjy1 = _mm_add_pd(fjy1,ty);
387 fjz1 = _mm_add_pd(fjz1,tz);
389 /**************************
390 * CALCULATE INTERACTIONS *
391 **************************/
393 /* COULOMB ELECTROSTATICS */
394 velec = _mm_mul_pd(qq12,rinv12);
395 felec = _mm_mul_pd(velec,rinvsq12);
397 /* Update potential sum for this i atom from the interaction with this j atom. */
398 velecsum = _mm_add_pd(velecsum,velec);
402 /* Calculate temporary vectorial force */
403 tx = _mm_mul_pd(fscal,dx12);
404 ty = _mm_mul_pd(fscal,dy12);
405 tz = _mm_mul_pd(fscal,dz12);
407 /* Update vectorial force */
408 fix1 = _mm_add_pd(fix1,tx);
409 fiy1 = _mm_add_pd(fiy1,ty);
410 fiz1 = _mm_add_pd(fiz1,tz);
412 fjx2 = _mm_add_pd(fjx2,tx);
413 fjy2 = _mm_add_pd(fjy2,ty);
414 fjz2 = _mm_add_pd(fjz2,tz);
416 /**************************
417 * CALCULATE INTERACTIONS *
418 **************************/
420 /* COULOMB ELECTROSTATICS */
421 velec = _mm_mul_pd(qq13,rinv13);
422 felec = _mm_mul_pd(velec,rinvsq13);
424 /* Update potential sum for this i atom from the interaction with this j atom. */
425 velecsum = _mm_add_pd(velecsum,velec);
429 /* Calculate temporary vectorial force */
430 tx = _mm_mul_pd(fscal,dx13);
431 ty = _mm_mul_pd(fscal,dy13);
432 tz = _mm_mul_pd(fscal,dz13);
434 /* Update vectorial force */
435 fix1 = _mm_add_pd(fix1,tx);
436 fiy1 = _mm_add_pd(fiy1,ty);
437 fiz1 = _mm_add_pd(fiz1,tz);
439 fjx3 = _mm_add_pd(fjx3,tx);
440 fjy3 = _mm_add_pd(fjy3,ty);
441 fjz3 = _mm_add_pd(fjz3,tz);
443 /**************************
444 * CALCULATE INTERACTIONS *
445 **************************/
447 /* COULOMB ELECTROSTATICS */
448 velec = _mm_mul_pd(qq21,rinv21);
449 felec = _mm_mul_pd(velec,rinvsq21);
451 /* Update potential sum for this i atom from the interaction with this j atom. */
452 velecsum = _mm_add_pd(velecsum,velec);
456 /* Calculate temporary vectorial force */
457 tx = _mm_mul_pd(fscal,dx21);
458 ty = _mm_mul_pd(fscal,dy21);
459 tz = _mm_mul_pd(fscal,dz21);
461 /* Update vectorial force */
462 fix2 = _mm_add_pd(fix2,tx);
463 fiy2 = _mm_add_pd(fiy2,ty);
464 fiz2 = _mm_add_pd(fiz2,tz);
466 fjx1 = _mm_add_pd(fjx1,tx);
467 fjy1 = _mm_add_pd(fjy1,ty);
468 fjz1 = _mm_add_pd(fjz1,tz);
470 /**************************
471 * CALCULATE INTERACTIONS *
472 **************************/
474 /* COULOMB ELECTROSTATICS */
475 velec = _mm_mul_pd(qq22,rinv22);
476 felec = _mm_mul_pd(velec,rinvsq22);
478 /* Update potential sum for this i atom from the interaction with this j atom. */
479 velecsum = _mm_add_pd(velecsum,velec);
483 /* Calculate temporary vectorial force */
484 tx = _mm_mul_pd(fscal,dx22);
485 ty = _mm_mul_pd(fscal,dy22);
486 tz = _mm_mul_pd(fscal,dz22);
488 /* Update vectorial force */
489 fix2 = _mm_add_pd(fix2,tx);
490 fiy2 = _mm_add_pd(fiy2,ty);
491 fiz2 = _mm_add_pd(fiz2,tz);
493 fjx2 = _mm_add_pd(fjx2,tx);
494 fjy2 = _mm_add_pd(fjy2,ty);
495 fjz2 = _mm_add_pd(fjz2,tz);
497 /**************************
498 * CALCULATE INTERACTIONS *
499 **************************/
501 /* COULOMB ELECTROSTATICS */
502 velec = _mm_mul_pd(qq23,rinv23);
503 felec = _mm_mul_pd(velec,rinvsq23);
505 /* Update potential sum for this i atom from the interaction with this j atom. */
506 velecsum = _mm_add_pd(velecsum,velec);
510 /* Calculate temporary vectorial force */
511 tx = _mm_mul_pd(fscal,dx23);
512 ty = _mm_mul_pd(fscal,dy23);
513 tz = _mm_mul_pd(fscal,dz23);
515 /* Update vectorial force */
516 fix2 = _mm_add_pd(fix2,tx);
517 fiy2 = _mm_add_pd(fiy2,ty);
518 fiz2 = _mm_add_pd(fiz2,tz);
520 fjx3 = _mm_add_pd(fjx3,tx);
521 fjy3 = _mm_add_pd(fjy3,ty);
522 fjz3 = _mm_add_pd(fjz3,tz);
524 /**************************
525 * CALCULATE INTERACTIONS *
526 **************************/
528 /* COULOMB ELECTROSTATICS */
529 velec = _mm_mul_pd(qq31,rinv31);
530 felec = _mm_mul_pd(velec,rinvsq31);
532 /* Update potential sum for this i atom from the interaction with this j atom. */
533 velecsum = _mm_add_pd(velecsum,velec);
537 /* Calculate temporary vectorial force */
538 tx = _mm_mul_pd(fscal,dx31);
539 ty = _mm_mul_pd(fscal,dy31);
540 tz = _mm_mul_pd(fscal,dz31);
542 /* Update vectorial force */
543 fix3 = _mm_add_pd(fix3,tx);
544 fiy3 = _mm_add_pd(fiy3,ty);
545 fiz3 = _mm_add_pd(fiz3,tz);
547 fjx1 = _mm_add_pd(fjx1,tx);
548 fjy1 = _mm_add_pd(fjy1,ty);
549 fjz1 = _mm_add_pd(fjz1,tz);
551 /**************************
552 * CALCULATE INTERACTIONS *
553 **************************/
555 /* COULOMB ELECTROSTATICS */
556 velec = _mm_mul_pd(qq32,rinv32);
557 felec = _mm_mul_pd(velec,rinvsq32);
559 /* Update potential sum for this i atom from the interaction with this j atom. */
560 velecsum = _mm_add_pd(velecsum,velec);
564 /* Calculate temporary vectorial force */
565 tx = _mm_mul_pd(fscal,dx32);
566 ty = _mm_mul_pd(fscal,dy32);
567 tz = _mm_mul_pd(fscal,dz32);
569 /* Update vectorial force */
570 fix3 = _mm_add_pd(fix3,tx);
571 fiy3 = _mm_add_pd(fiy3,ty);
572 fiz3 = _mm_add_pd(fiz3,tz);
574 fjx2 = _mm_add_pd(fjx2,tx);
575 fjy2 = _mm_add_pd(fjy2,ty);
576 fjz2 = _mm_add_pd(fjz2,tz);
578 /**************************
579 * CALCULATE INTERACTIONS *
580 **************************/
582 /* COULOMB ELECTROSTATICS */
583 velec = _mm_mul_pd(qq33,rinv33);
584 felec = _mm_mul_pd(velec,rinvsq33);
586 /* Update potential sum for this i atom from the interaction with this j atom. */
587 velecsum = _mm_add_pd(velecsum,velec);
591 /* Calculate temporary vectorial force */
592 tx = _mm_mul_pd(fscal,dx33);
593 ty = _mm_mul_pd(fscal,dy33);
594 tz = _mm_mul_pd(fscal,dz33);
596 /* Update vectorial force */
597 fix3 = _mm_add_pd(fix3,tx);
598 fiy3 = _mm_add_pd(fiy3,ty);
599 fiz3 = _mm_add_pd(fiz3,tz);
601 fjx3 = _mm_add_pd(fjx3,tx);
602 fjy3 = _mm_add_pd(fjy3,ty);
603 fjz3 = _mm_add_pd(fjz3,tz);
605 gmx_mm_decrement_4rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
607 /* Inner loop uses 311 flops */
614 j_coord_offsetA = DIM*jnrA;
616 /* load j atom coordinates */
617 gmx_mm_load_4rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
618 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
619 &jy2,&jz2,&jx3,&jy3,&jz3);
621 /* Calculate displacement vector */
622 dx00 = _mm_sub_pd(ix0,jx0);
623 dy00 = _mm_sub_pd(iy0,jy0);
624 dz00 = _mm_sub_pd(iz0,jz0);
625 dx11 = _mm_sub_pd(ix1,jx1);
626 dy11 = _mm_sub_pd(iy1,jy1);
627 dz11 = _mm_sub_pd(iz1,jz1);
628 dx12 = _mm_sub_pd(ix1,jx2);
629 dy12 = _mm_sub_pd(iy1,jy2);
630 dz12 = _mm_sub_pd(iz1,jz2);
631 dx13 = _mm_sub_pd(ix1,jx3);
632 dy13 = _mm_sub_pd(iy1,jy3);
633 dz13 = _mm_sub_pd(iz1,jz3);
634 dx21 = _mm_sub_pd(ix2,jx1);
635 dy21 = _mm_sub_pd(iy2,jy1);
636 dz21 = _mm_sub_pd(iz2,jz1);
637 dx22 = _mm_sub_pd(ix2,jx2);
638 dy22 = _mm_sub_pd(iy2,jy2);
639 dz22 = _mm_sub_pd(iz2,jz2);
640 dx23 = _mm_sub_pd(ix2,jx3);
641 dy23 = _mm_sub_pd(iy2,jy3);
642 dz23 = _mm_sub_pd(iz2,jz3);
643 dx31 = _mm_sub_pd(ix3,jx1);
644 dy31 = _mm_sub_pd(iy3,jy1);
645 dz31 = _mm_sub_pd(iz3,jz1);
646 dx32 = _mm_sub_pd(ix3,jx2);
647 dy32 = _mm_sub_pd(iy3,jy2);
648 dz32 = _mm_sub_pd(iz3,jz2);
649 dx33 = _mm_sub_pd(ix3,jx3);
650 dy33 = _mm_sub_pd(iy3,jy3);
651 dz33 = _mm_sub_pd(iz3,jz3);
653 /* Calculate squared distance and things based on it */
654 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
655 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
656 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
657 rsq13 = gmx_mm_calc_rsq_pd(dx13,dy13,dz13);
658 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
659 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
660 rsq23 = gmx_mm_calc_rsq_pd(dx23,dy23,dz23);
661 rsq31 = gmx_mm_calc_rsq_pd(dx31,dy31,dz31);
662 rsq32 = gmx_mm_calc_rsq_pd(dx32,dy32,dz32);
663 rsq33 = gmx_mm_calc_rsq_pd(dx33,dy33,dz33);
665 rinv00 = sse41_invsqrt_d(rsq00);
666 rinv11 = sse41_invsqrt_d(rsq11);
667 rinv12 = sse41_invsqrt_d(rsq12);
668 rinv13 = sse41_invsqrt_d(rsq13);
669 rinv21 = sse41_invsqrt_d(rsq21);
670 rinv22 = sse41_invsqrt_d(rsq22);
671 rinv23 = sse41_invsqrt_d(rsq23);
672 rinv31 = sse41_invsqrt_d(rsq31);
673 rinv32 = sse41_invsqrt_d(rsq32);
674 rinv33 = sse41_invsqrt_d(rsq33);
676 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
677 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
678 rinvsq13 = _mm_mul_pd(rinv13,rinv13);
679 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
680 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
681 rinvsq23 = _mm_mul_pd(rinv23,rinv23);
682 rinvsq31 = _mm_mul_pd(rinv31,rinv31);
683 rinvsq32 = _mm_mul_pd(rinv32,rinv32);
684 rinvsq33 = _mm_mul_pd(rinv33,rinv33);
686 fjx0 = _mm_setzero_pd();
687 fjy0 = _mm_setzero_pd();
688 fjz0 = _mm_setzero_pd();
689 fjx1 = _mm_setzero_pd();
690 fjy1 = _mm_setzero_pd();
691 fjz1 = _mm_setzero_pd();
692 fjx2 = _mm_setzero_pd();
693 fjy2 = _mm_setzero_pd();
694 fjz2 = _mm_setzero_pd();
695 fjx3 = _mm_setzero_pd();
696 fjy3 = _mm_setzero_pd();
697 fjz3 = _mm_setzero_pd();
699 /**************************
700 * CALCULATE INTERACTIONS *
701 **************************/
703 r00 = _mm_mul_pd(rsq00,rinv00);
705 /* Calculate table index by multiplying r with table scale and truncate to integer */
706 rt = _mm_mul_pd(r00,vftabscale);
707 vfitab = _mm_cvttpd_epi32(rt);
708 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
709 vfitab = _mm_slli_epi32(vfitab,3);
711 /* CUBIC SPLINE TABLE DISPERSION */
712 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
713 F = _mm_setzero_pd();
714 GMX_MM_TRANSPOSE2_PD(Y,F);
715 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
716 H = _mm_setzero_pd();
717 GMX_MM_TRANSPOSE2_PD(G,H);
718 Heps = _mm_mul_pd(vfeps,H);
719 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
720 VV = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
721 vvdw6 = _mm_mul_pd(c6_00,VV);
722 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
723 fvdw6 = _mm_mul_pd(c6_00,FF);
725 /* CUBIC SPLINE TABLE REPULSION */
726 vfitab = _mm_add_epi32(vfitab,ifour);
727 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
728 F = _mm_setzero_pd();
729 GMX_MM_TRANSPOSE2_PD(Y,F);
730 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
731 H = _mm_setzero_pd();
732 GMX_MM_TRANSPOSE2_PD(G,H);
733 Heps = _mm_mul_pd(vfeps,H);
734 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
735 VV = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
736 vvdw12 = _mm_mul_pd(c12_00,VV);
737 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
738 fvdw12 = _mm_mul_pd(c12_00,FF);
739 vvdw = _mm_add_pd(vvdw12,vvdw6);
740 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
742 /* Update potential sum for this i atom from the interaction with this j atom. */
743 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
744 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
748 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
750 /* Calculate temporary vectorial force */
751 tx = _mm_mul_pd(fscal,dx00);
752 ty = _mm_mul_pd(fscal,dy00);
753 tz = _mm_mul_pd(fscal,dz00);
755 /* Update vectorial force */
756 fix0 = _mm_add_pd(fix0,tx);
757 fiy0 = _mm_add_pd(fiy0,ty);
758 fiz0 = _mm_add_pd(fiz0,tz);
760 fjx0 = _mm_add_pd(fjx0,tx);
761 fjy0 = _mm_add_pd(fjy0,ty);
762 fjz0 = _mm_add_pd(fjz0,tz);
764 /**************************
765 * CALCULATE INTERACTIONS *
766 **************************/
768 /* COULOMB ELECTROSTATICS */
769 velec = _mm_mul_pd(qq11,rinv11);
770 felec = _mm_mul_pd(velec,rinvsq11);
772 /* Update potential sum for this i atom from the interaction with this j atom. */
773 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
774 velecsum = _mm_add_pd(velecsum,velec);
778 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
780 /* Calculate temporary vectorial force */
781 tx = _mm_mul_pd(fscal,dx11);
782 ty = _mm_mul_pd(fscal,dy11);
783 tz = _mm_mul_pd(fscal,dz11);
785 /* Update vectorial force */
786 fix1 = _mm_add_pd(fix1,tx);
787 fiy1 = _mm_add_pd(fiy1,ty);
788 fiz1 = _mm_add_pd(fiz1,tz);
790 fjx1 = _mm_add_pd(fjx1,tx);
791 fjy1 = _mm_add_pd(fjy1,ty);
792 fjz1 = _mm_add_pd(fjz1,tz);
794 /**************************
795 * CALCULATE INTERACTIONS *
796 **************************/
798 /* COULOMB ELECTROSTATICS */
799 velec = _mm_mul_pd(qq12,rinv12);
800 felec = _mm_mul_pd(velec,rinvsq12);
802 /* Update potential sum for this i atom from the interaction with this j atom. */
803 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
804 velecsum = _mm_add_pd(velecsum,velec);
808 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
810 /* Calculate temporary vectorial force */
811 tx = _mm_mul_pd(fscal,dx12);
812 ty = _mm_mul_pd(fscal,dy12);
813 tz = _mm_mul_pd(fscal,dz12);
815 /* Update vectorial force */
816 fix1 = _mm_add_pd(fix1,tx);
817 fiy1 = _mm_add_pd(fiy1,ty);
818 fiz1 = _mm_add_pd(fiz1,tz);
820 fjx2 = _mm_add_pd(fjx2,tx);
821 fjy2 = _mm_add_pd(fjy2,ty);
822 fjz2 = _mm_add_pd(fjz2,tz);
824 /**************************
825 * CALCULATE INTERACTIONS *
826 **************************/
828 /* COULOMB ELECTROSTATICS */
829 velec = _mm_mul_pd(qq13,rinv13);
830 felec = _mm_mul_pd(velec,rinvsq13);
832 /* Update potential sum for this i atom from the interaction with this j atom. */
833 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
834 velecsum = _mm_add_pd(velecsum,velec);
838 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
840 /* Calculate temporary vectorial force */
841 tx = _mm_mul_pd(fscal,dx13);
842 ty = _mm_mul_pd(fscal,dy13);
843 tz = _mm_mul_pd(fscal,dz13);
845 /* Update vectorial force */
846 fix1 = _mm_add_pd(fix1,tx);
847 fiy1 = _mm_add_pd(fiy1,ty);
848 fiz1 = _mm_add_pd(fiz1,tz);
850 fjx3 = _mm_add_pd(fjx3,tx);
851 fjy3 = _mm_add_pd(fjy3,ty);
852 fjz3 = _mm_add_pd(fjz3,tz);
854 /**************************
855 * CALCULATE INTERACTIONS *
856 **************************/
858 /* COULOMB ELECTROSTATICS */
859 velec = _mm_mul_pd(qq21,rinv21);
860 felec = _mm_mul_pd(velec,rinvsq21);
862 /* Update potential sum for this i atom from the interaction with this j atom. */
863 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
864 velecsum = _mm_add_pd(velecsum,velec);
868 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
870 /* Calculate temporary vectorial force */
871 tx = _mm_mul_pd(fscal,dx21);
872 ty = _mm_mul_pd(fscal,dy21);
873 tz = _mm_mul_pd(fscal,dz21);
875 /* Update vectorial force */
876 fix2 = _mm_add_pd(fix2,tx);
877 fiy2 = _mm_add_pd(fiy2,ty);
878 fiz2 = _mm_add_pd(fiz2,tz);
880 fjx1 = _mm_add_pd(fjx1,tx);
881 fjy1 = _mm_add_pd(fjy1,ty);
882 fjz1 = _mm_add_pd(fjz1,tz);
884 /**************************
885 * CALCULATE INTERACTIONS *
886 **************************/
888 /* COULOMB ELECTROSTATICS */
889 velec = _mm_mul_pd(qq22,rinv22);
890 felec = _mm_mul_pd(velec,rinvsq22);
892 /* Update potential sum for this i atom from the interaction with this j atom. */
893 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
894 velecsum = _mm_add_pd(velecsum,velec);
898 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
900 /* Calculate temporary vectorial force */
901 tx = _mm_mul_pd(fscal,dx22);
902 ty = _mm_mul_pd(fscal,dy22);
903 tz = _mm_mul_pd(fscal,dz22);
905 /* Update vectorial force */
906 fix2 = _mm_add_pd(fix2,tx);
907 fiy2 = _mm_add_pd(fiy2,ty);
908 fiz2 = _mm_add_pd(fiz2,tz);
910 fjx2 = _mm_add_pd(fjx2,tx);
911 fjy2 = _mm_add_pd(fjy2,ty);
912 fjz2 = _mm_add_pd(fjz2,tz);
914 /**************************
915 * CALCULATE INTERACTIONS *
916 **************************/
918 /* COULOMB ELECTROSTATICS */
919 velec = _mm_mul_pd(qq23,rinv23);
920 felec = _mm_mul_pd(velec,rinvsq23);
922 /* Update potential sum for this i atom from the interaction with this j atom. */
923 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
924 velecsum = _mm_add_pd(velecsum,velec);
928 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
930 /* Calculate temporary vectorial force */
931 tx = _mm_mul_pd(fscal,dx23);
932 ty = _mm_mul_pd(fscal,dy23);
933 tz = _mm_mul_pd(fscal,dz23);
935 /* Update vectorial force */
936 fix2 = _mm_add_pd(fix2,tx);
937 fiy2 = _mm_add_pd(fiy2,ty);
938 fiz2 = _mm_add_pd(fiz2,tz);
940 fjx3 = _mm_add_pd(fjx3,tx);
941 fjy3 = _mm_add_pd(fjy3,ty);
942 fjz3 = _mm_add_pd(fjz3,tz);
944 /**************************
945 * CALCULATE INTERACTIONS *
946 **************************/
948 /* COULOMB ELECTROSTATICS */
949 velec = _mm_mul_pd(qq31,rinv31);
950 felec = _mm_mul_pd(velec,rinvsq31);
952 /* Update potential sum for this i atom from the interaction with this j atom. */
953 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
954 velecsum = _mm_add_pd(velecsum,velec);
958 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
960 /* Calculate temporary vectorial force */
961 tx = _mm_mul_pd(fscal,dx31);
962 ty = _mm_mul_pd(fscal,dy31);
963 tz = _mm_mul_pd(fscal,dz31);
965 /* Update vectorial force */
966 fix3 = _mm_add_pd(fix3,tx);
967 fiy3 = _mm_add_pd(fiy3,ty);
968 fiz3 = _mm_add_pd(fiz3,tz);
970 fjx1 = _mm_add_pd(fjx1,tx);
971 fjy1 = _mm_add_pd(fjy1,ty);
972 fjz1 = _mm_add_pd(fjz1,tz);
974 /**************************
975 * CALCULATE INTERACTIONS *
976 **************************/
978 /* COULOMB ELECTROSTATICS */
979 velec = _mm_mul_pd(qq32,rinv32);
980 felec = _mm_mul_pd(velec,rinvsq32);
982 /* Update potential sum for this i atom from the interaction with this j atom. */
983 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
984 velecsum = _mm_add_pd(velecsum,velec);
988 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
990 /* Calculate temporary vectorial force */
991 tx = _mm_mul_pd(fscal,dx32);
992 ty = _mm_mul_pd(fscal,dy32);
993 tz = _mm_mul_pd(fscal,dz32);
995 /* Update vectorial force */
996 fix3 = _mm_add_pd(fix3,tx);
997 fiy3 = _mm_add_pd(fiy3,ty);
998 fiz3 = _mm_add_pd(fiz3,tz);
1000 fjx2 = _mm_add_pd(fjx2,tx);
1001 fjy2 = _mm_add_pd(fjy2,ty);
1002 fjz2 = _mm_add_pd(fjz2,tz);
1004 /**************************
1005 * CALCULATE INTERACTIONS *
1006 **************************/
1008 /* COULOMB ELECTROSTATICS */
1009 velec = _mm_mul_pd(qq33,rinv33);
1010 felec = _mm_mul_pd(velec,rinvsq33);
1012 /* Update potential sum for this i atom from the interaction with this j atom. */
1013 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1014 velecsum = _mm_add_pd(velecsum,velec);
1018 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1020 /* Calculate temporary vectorial force */
1021 tx = _mm_mul_pd(fscal,dx33);
1022 ty = _mm_mul_pd(fscal,dy33);
1023 tz = _mm_mul_pd(fscal,dz33);
1025 /* Update vectorial force */
1026 fix3 = _mm_add_pd(fix3,tx);
1027 fiy3 = _mm_add_pd(fiy3,ty);
1028 fiz3 = _mm_add_pd(fiz3,tz);
1030 fjx3 = _mm_add_pd(fjx3,tx);
1031 fjy3 = _mm_add_pd(fjy3,ty);
1032 fjz3 = _mm_add_pd(fjz3,tz);
1034 gmx_mm_decrement_4rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1036 /* Inner loop uses 311 flops */
1039 /* End of innermost loop */
1041 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1042 f+i_coord_offset,fshift+i_shift_offset);
1045 /* Update potential energies */
1046 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1047 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1049 /* Increment number of inner iterations */
1050 inneriter += j_index_end - j_index_start;
1052 /* Outer loop uses 26 flops */
1055 /* Increment number of outer iterations */
1058 /* Update outer/inner flops */
1060 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_VF,outeriter*26 + inneriter*311);
1063 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_F_sse4_1_double
1064 * Electrostatics interaction: Coulomb
1065 * VdW interaction: CubicSplineTable
1066 * Geometry: Water4-Water4
1067 * Calculate force/pot: Force
1070 nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_F_sse4_1_double
1071 (t_nblist * gmx_restrict nlist,
1072 rvec * gmx_restrict xx,
1073 rvec * gmx_restrict ff,
1074 struct t_forcerec * gmx_restrict fr,
1075 t_mdatoms * gmx_restrict mdatoms,
1076 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1077 t_nrnb * gmx_restrict nrnb)
1079 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1080 * just 0 for non-waters.
1081 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
1082 * jnr indices corresponding to data put in the four positions in the SIMD register.
1084 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1085 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1087 int j_coord_offsetA,j_coord_offsetB;
1088 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1089 real rcutoff_scalar;
1090 real *shiftvec,*fshift,*x,*f;
1091 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1093 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1095 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1097 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1099 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
1100 int vdwjidx0A,vdwjidx0B;
1101 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1102 int vdwjidx1A,vdwjidx1B;
1103 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1104 int vdwjidx2A,vdwjidx2B;
1105 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1106 int vdwjidx3A,vdwjidx3B;
1107 __m128d jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
1108 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1109 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1110 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1111 __m128d dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
1112 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1113 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1114 __m128d dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
1115 __m128d dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
1116 __m128d dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
1117 __m128d dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
1118 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
1121 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1124 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
1125 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
1127 __m128i ifour = _mm_set1_epi32(4);
1128 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
1130 __m128d dummy_mask,cutoff_mask;
1131 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
1132 __m128d one = _mm_set1_pd(1.0);
1133 __m128d two = _mm_set1_pd(2.0);
1139 jindex = nlist->jindex;
1141 shiftidx = nlist->shift;
1143 shiftvec = fr->shift_vec[0];
1144 fshift = fr->fshift[0];
1145 facel = _mm_set1_pd(fr->ic->epsfac);
1146 charge = mdatoms->chargeA;
1147 nvdwtype = fr->ntype;
1148 vdwparam = fr->nbfp;
1149 vdwtype = mdatoms->typeA;
1151 vftab = kernel_data->table_vdw->data;
1152 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
1154 /* Setup water-specific parameters */
1155 inr = nlist->iinr[0];
1156 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
1157 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
1158 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
1159 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1161 jq1 = _mm_set1_pd(charge[inr+1]);
1162 jq2 = _mm_set1_pd(charge[inr+2]);
1163 jq3 = _mm_set1_pd(charge[inr+3]);
1164 vdwjidx0A = 2*vdwtype[inr+0];
1165 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
1166 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
1167 qq11 = _mm_mul_pd(iq1,jq1);
1168 qq12 = _mm_mul_pd(iq1,jq2);
1169 qq13 = _mm_mul_pd(iq1,jq3);
1170 qq21 = _mm_mul_pd(iq2,jq1);
1171 qq22 = _mm_mul_pd(iq2,jq2);
1172 qq23 = _mm_mul_pd(iq2,jq3);
1173 qq31 = _mm_mul_pd(iq3,jq1);
1174 qq32 = _mm_mul_pd(iq3,jq2);
1175 qq33 = _mm_mul_pd(iq3,jq3);
1177 /* Avoid stupid compiler warnings */
1179 j_coord_offsetA = 0;
1180 j_coord_offsetB = 0;
1185 /* Start outer loop over neighborlists */
1186 for(iidx=0; iidx<nri; iidx++)
1188 /* Load shift vector for this list */
1189 i_shift_offset = DIM*shiftidx[iidx];
1191 /* Load limits for loop over neighbors */
1192 j_index_start = jindex[iidx];
1193 j_index_end = jindex[iidx+1];
1195 /* Get outer coordinate index */
1197 i_coord_offset = DIM*inr;
1199 /* Load i particle coords and add shift vector */
1200 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1201 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
1203 fix0 = _mm_setzero_pd();
1204 fiy0 = _mm_setzero_pd();
1205 fiz0 = _mm_setzero_pd();
1206 fix1 = _mm_setzero_pd();
1207 fiy1 = _mm_setzero_pd();
1208 fiz1 = _mm_setzero_pd();
1209 fix2 = _mm_setzero_pd();
1210 fiy2 = _mm_setzero_pd();
1211 fiz2 = _mm_setzero_pd();
1212 fix3 = _mm_setzero_pd();
1213 fiy3 = _mm_setzero_pd();
1214 fiz3 = _mm_setzero_pd();
1216 /* Start inner kernel loop */
1217 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
1220 /* Get j neighbor index, and coordinate index */
1222 jnrB = jjnr[jidx+1];
1223 j_coord_offsetA = DIM*jnrA;
1224 j_coord_offsetB = DIM*jnrB;
1226 /* load j atom coordinates */
1227 gmx_mm_load_4rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1228 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
1229 &jy2,&jz2,&jx3,&jy3,&jz3);
1231 /* Calculate displacement vector */
1232 dx00 = _mm_sub_pd(ix0,jx0);
1233 dy00 = _mm_sub_pd(iy0,jy0);
1234 dz00 = _mm_sub_pd(iz0,jz0);
1235 dx11 = _mm_sub_pd(ix1,jx1);
1236 dy11 = _mm_sub_pd(iy1,jy1);
1237 dz11 = _mm_sub_pd(iz1,jz1);
1238 dx12 = _mm_sub_pd(ix1,jx2);
1239 dy12 = _mm_sub_pd(iy1,jy2);
1240 dz12 = _mm_sub_pd(iz1,jz2);
1241 dx13 = _mm_sub_pd(ix1,jx3);
1242 dy13 = _mm_sub_pd(iy1,jy3);
1243 dz13 = _mm_sub_pd(iz1,jz3);
1244 dx21 = _mm_sub_pd(ix2,jx1);
1245 dy21 = _mm_sub_pd(iy2,jy1);
1246 dz21 = _mm_sub_pd(iz2,jz1);
1247 dx22 = _mm_sub_pd(ix2,jx2);
1248 dy22 = _mm_sub_pd(iy2,jy2);
1249 dz22 = _mm_sub_pd(iz2,jz2);
1250 dx23 = _mm_sub_pd(ix2,jx3);
1251 dy23 = _mm_sub_pd(iy2,jy3);
1252 dz23 = _mm_sub_pd(iz2,jz3);
1253 dx31 = _mm_sub_pd(ix3,jx1);
1254 dy31 = _mm_sub_pd(iy3,jy1);
1255 dz31 = _mm_sub_pd(iz3,jz1);
1256 dx32 = _mm_sub_pd(ix3,jx2);
1257 dy32 = _mm_sub_pd(iy3,jy2);
1258 dz32 = _mm_sub_pd(iz3,jz2);
1259 dx33 = _mm_sub_pd(ix3,jx3);
1260 dy33 = _mm_sub_pd(iy3,jy3);
1261 dz33 = _mm_sub_pd(iz3,jz3);
1263 /* Calculate squared distance and things based on it */
1264 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1265 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1266 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1267 rsq13 = gmx_mm_calc_rsq_pd(dx13,dy13,dz13);
1268 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1269 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1270 rsq23 = gmx_mm_calc_rsq_pd(dx23,dy23,dz23);
1271 rsq31 = gmx_mm_calc_rsq_pd(dx31,dy31,dz31);
1272 rsq32 = gmx_mm_calc_rsq_pd(dx32,dy32,dz32);
1273 rsq33 = gmx_mm_calc_rsq_pd(dx33,dy33,dz33);
1275 rinv00 = sse41_invsqrt_d(rsq00);
1276 rinv11 = sse41_invsqrt_d(rsq11);
1277 rinv12 = sse41_invsqrt_d(rsq12);
1278 rinv13 = sse41_invsqrt_d(rsq13);
1279 rinv21 = sse41_invsqrt_d(rsq21);
1280 rinv22 = sse41_invsqrt_d(rsq22);
1281 rinv23 = sse41_invsqrt_d(rsq23);
1282 rinv31 = sse41_invsqrt_d(rsq31);
1283 rinv32 = sse41_invsqrt_d(rsq32);
1284 rinv33 = sse41_invsqrt_d(rsq33);
1286 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1287 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1288 rinvsq13 = _mm_mul_pd(rinv13,rinv13);
1289 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1290 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1291 rinvsq23 = _mm_mul_pd(rinv23,rinv23);
1292 rinvsq31 = _mm_mul_pd(rinv31,rinv31);
1293 rinvsq32 = _mm_mul_pd(rinv32,rinv32);
1294 rinvsq33 = _mm_mul_pd(rinv33,rinv33);
1296 fjx0 = _mm_setzero_pd();
1297 fjy0 = _mm_setzero_pd();
1298 fjz0 = _mm_setzero_pd();
1299 fjx1 = _mm_setzero_pd();
1300 fjy1 = _mm_setzero_pd();
1301 fjz1 = _mm_setzero_pd();
1302 fjx2 = _mm_setzero_pd();
1303 fjy2 = _mm_setzero_pd();
1304 fjz2 = _mm_setzero_pd();
1305 fjx3 = _mm_setzero_pd();
1306 fjy3 = _mm_setzero_pd();
1307 fjz3 = _mm_setzero_pd();
1309 /**************************
1310 * CALCULATE INTERACTIONS *
1311 **************************/
1313 r00 = _mm_mul_pd(rsq00,rinv00);
1315 /* Calculate table index by multiplying r with table scale and truncate to integer */
1316 rt = _mm_mul_pd(r00,vftabscale);
1317 vfitab = _mm_cvttpd_epi32(rt);
1318 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
1319 vfitab = _mm_slli_epi32(vfitab,3);
1321 /* CUBIC SPLINE TABLE DISPERSION */
1322 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
1323 F = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
1324 GMX_MM_TRANSPOSE2_PD(Y,F);
1325 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
1326 H = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
1327 GMX_MM_TRANSPOSE2_PD(G,H);
1328 Heps = _mm_mul_pd(vfeps,H);
1329 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
1330 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
1331 fvdw6 = _mm_mul_pd(c6_00,FF);
1333 /* CUBIC SPLINE TABLE REPULSION */
1334 vfitab = _mm_add_epi32(vfitab,ifour);
1335 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
1336 F = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
1337 GMX_MM_TRANSPOSE2_PD(Y,F);
1338 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
1339 H = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
1340 GMX_MM_TRANSPOSE2_PD(G,H);
1341 Heps = _mm_mul_pd(vfeps,H);
1342 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
1343 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
1344 fvdw12 = _mm_mul_pd(c12_00,FF);
1345 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
1349 /* Calculate temporary vectorial force */
1350 tx = _mm_mul_pd(fscal,dx00);
1351 ty = _mm_mul_pd(fscal,dy00);
1352 tz = _mm_mul_pd(fscal,dz00);
1354 /* Update vectorial force */
1355 fix0 = _mm_add_pd(fix0,tx);
1356 fiy0 = _mm_add_pd(fiy0,ty);
1357 fiz0 = _mm_add_pd(fiz0,tz);
1359 fjx0 = _mm_add_pd(fjx0,tx);
1360 fjy0 = _mm_add_pd(fjy0,ty);
1361 fjz0 = _mm_add_pd(fjz0,tz);
1363 /**************************
1364 * CALCULATE INTERACTIONS *
1365 **************************/
1367 /* COULOMB ELECTROSTATICS */
1368 velec = _mm_mul_pd(qq11,rinv11);
1369 felec = _mm_mul_pd(velec,rinvsq11);
1373 /* Calculate temporary vectorial force */
1374 tx = _mm_mul_pd(fscal,dx11);
1375 ty = _mm_mul_pd(fscal,dy11);
1376 tz = _mm_mul_pd(fscal,dz11);
1378 /* Update vectorial force */
1379 fix1 = _mm_add_pd(fix1,tx);
1380 fiy1 = _mm_add_pd(fiy1,ty);
1381 fiz1 = _mm_add_pd(fiz1,tz);
1383 fjx1 = _mm_add_pd(fjx1,tx);
1384 fjy1 = _mm_add_pd(fjy1,ty);
1385 fjz1 = _mm_add_pd(fjz1,tz);
1387 /**************************
1388 * CALCULATE INTERACTIONS *
1389 **************************/
1391 /* COULOMB ELECTROSTATICS */
1392 velec = _mm_mul_pd(qq12,rinv12);
1393 felec = _mm_mul_pd(velec,rinvsq12);
1397 /* Calculate temporary vectorial force */
1398 tx = _mm_mul_pd(fscal,dx12);
1399 ty = _mm_mul_pd(fscal,dy12);
1400 tz = _mm_mul_pd(fscal,dz12);
1402 /* Update vectorial force */
1403 fix1 = _mm_add_pd(fix1,tx);
1404 fiy1 = _mm_add_pd(fiy1,ty);
1405 fiz1 = _mm_add_pd(fiz1,tz);
1407 fjx2 = _mm_add_pd(fjx2,tx);
1408 fjy2 = _mm_add_pd(fjy2,ty);
1409 fjz2 = _mm_add_pd(fjz2,tz);
1411 /**************************
1412 * CALCULATE INTERACTIONS *
1413 **************************/
1415 /* COULOMB ELECTROSTATICS */
1416 velec = _mm_mul_pd(qq13,rinv13);
1417 felec = _mm_mul_pd(velec,rinvsq13);
1421 /* Calculate temporary vectorial force */
1422 tx = _mm_mul_pd(fscal,dx13);
1423 ty = _mm_mul_pd(fscal,dy13);
1424 tz = _mm_mul_pd(fscal,dz13);
1426 /* Update vectorial force */
1427 fix1 = _mm_add_pd(fix1,tx);
1428 fiy1 = _mm_add_pd(fiy1,ty);
1429 fiz1 = _mm_add_pd(fiz1,tz);
1431 fjx3 = _mm_add_pd(fjx3,tx);
1432 fjy3 = _mm_add_pd(fjy3,ty);
1433 fjz3 = _mm_add_pd(fjz3,tz);
1435 /**************************
1436 * CALCULATE INTERACTIONS *
1437 **************************/
1439 /* COULOMB ELECTROSTATICS */
1440 velec = _mm_mul_pd(qq21,rinv21);
1441 felec = _mm_mul_pd(velec,rinvsq21);
1445 /* Calculate temporary vectorial force */
1446 tx = _mm_mul_pd(fscal,dx21);
1447 ty = _mm_mul_pd(fscal,dy21);
1448 tz = _mm_mul_pd(fscal,dz21);
1450 /* Update vectorial force */
1451 fix2 = _mm_add_pd(fix2,tx);
1452 fiy2 = _mm_add_pd(fiy2,ty);
1453 fiz2 = _mm_add_pd(fiz2,tz);
1455 fjx1 = _mm_add_pd(fjx1,tx);
1456 fjy1 = _mm_add_pd(fjy1,ty);
1457 fjz1 = _mm_add_pd(fjz1,tz);
1459 /**************************
1460 * CALCULATE INTERACTIONS *
1461 **************************/
1463 /* COULOMB ELECTROSTATICS */
1464 velec = _mm_mul_pd(qq22,rinv22);
1465 felec = _mm_mul_pd(velec,rinvsq22);
1469 /* Calculate temporary vectorial force */
1470 tx = _mm_mul_pd(fscal,dx22);
1471 ty = _mm_mul_pd(fscal,dy22);
1472 tz = _mm_mul_pd(fscal,dz22);
1474 /* Update vectorial force */
1475 fix2 = _mm_add_pd(fix2,tx);
1476 fiy2 = _mm_add_pd(fiy2,ty);
1477 fiz2 = _mm_add_pd(fiz2,tz);
1479 fjx2 = _mm_add_pd(fjx2,tx);
1480 fjy2 = _mm_add_pd(fjy2,ty);
1481 fjz2 = _mm_add_pd(fjz2,tz);
1483 /**************************
1484 * CALCULATE INTERACTIONS *
1485 **************************/
1487 /* COULOMB ELECTROSTATICS */
1488 velec = _mm_mul_pd(qq23,rinv23);
1489 felec = _mm_mul_pd(velec,rinvsq23);
1493 /* Calculate temporary vectorial force */
1494 tx = _mm_mul_pd(fscal,dx23);
1495 ty = _mm_mul_pd(fscal,dy23);
1496 tz = _mm_mul_pd(fscal,dz23);
1498 /* Update vectorial force */
1499 fix2 = _mm_add_pd(fix2,tx);
1500 fiy2 = _mm_add_pd(fiy2,ty);
1501 fiz2 = _mm_add_pd(fiz2,tz);
1503 fjx3 = _mm_add_pd(fjx3,tx);
1504 fjy3 = _mm_add_pd(fjy3,ty);
1505 fjz3 = _mm_add_pd(fjz3,tz);
1507 /**************************
1508 * CALCULATE INTERACTIONS *
1509 **************************/
1511 /* COULOMB ELECTROSTATICS */
1512 velec = _mm_mul_pd(qq31,rinv31);
1513 felec = _mm_mul_pd(velec,rinvsq31);
1517 /* Calculate temporary vectorial force */
1518 tx = _mm_mul_pd(fscal,dx31);
1519 ty = _mm_mul_pd(fscal,dy31);
1520 tz = _mm_mul_pd(fscal,dz31);
1522 /* Update vectorial force */
1523 fix3 = _mm_add_pd(fix3,tx);
1524 fiy3 = _mm_add_pd(fiy3,ty);
1525 fiz3 = _mm_add_pd(fiz3,tz);
1527 fjx1 = _mm_add_pd(fjx1,tx);
1528 fjy1 = _mm_add_pd(fjy1,ty);
1529 fjz1 = _mm_add_pd(fjz1,tz);
1531 /**************************
1532 * CALCULATE INTERACTIONS *
1533 **************************/
1535 /* COULOMB ELECTROSTATICS */
1536 velec = _mm_mul_pd(qq32,rinv32);
1537 felec = _mm_mul_pd(velec,rinvsq32);
1541 /* Calculate temporary vectorial force */
1542 tx = _mm_mul_pd(fscal,dx32);
1543 ty = _mm_mul_pd(fscal,dy32);
1544 tz = _mm_mul_pd(fscal,dz32);
1546 /* Update vectorial force */
1547 fix3 = _mm_add_pd(fix3,tx);
1548 fiy3 = _mm_add_pd(fiy3,ty);
1549 fiz3 = _mm_add_pd(fiz3,tz);
1551 fjx2 = _mm_add_pd(fjx2,tx);
1552 fjy2 = _mm_add_pd(fjy2,ty);
1553 fjz2 = _mm_add_pd(fjz2,tz);
1555 /**************************
1556 * CALCULATE INTERACTIONS *
1557 **************************/
1559 /* COULOMB ELECTROSTATICS */
1560 velec = _mm_mul_pd(qq33,rinv33);
1561 felec = _mm_mul_pd(velec,rinvsq33);
1565 /* Calculate temporary vectorial force */
1566 tx = _mm_mul_pd(fscal,dx33);
1567 ty = _mm_mul_pd(fscal,dy33);
1568 tz = _mm_mul_pd(fscal,dz33);
1570 /* Update vectorial force */
1571 fix3 = _mm_add_pd(fix3,tx);
1572 fiy3 = _mm_add_pd(fiy3,ty);
1573 fiz3 = _mm_add_pd(fiz3,tz);
1575 fjx3 = _mm_add_pd(fjx3,tx);
1576 fjy3 = _mm_add_pd(fjy3,ty);
1577 fjz3 = _mm_add_pd(fjz3,tz);
1579 gmx_mm_decrement_4rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1581 /* Inner loop uses 294 flops */
1584 if(jidx<j_index_end)
1588 j_coord_offsetA = DIM*jnrA;
1590 /* load j atom coordinates */
1591 gmx_mm_load_4rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1592 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
1593 &jy2,&jz2,&jx3,&jy3,&jz3);
1595 /* Calculate displacement vector */
1596 dx00 = _mm_sub_pd(ix0,jx0);
1597 dy00 = _mm_sub_pd(iy0,jy0);
1598 dz00 = _mm_sub_pd(iz0,jz0);
1599 dx11 = _mm_sub_pd(ix1,jx1);
1600 dy11 = _mm_sub_pd(iy1,jy1);
1601 dz11 = _mm_sub_pd(iz1,jz1);
1602 dx12 = _mm_sub_pd(ix1,jx2);
1603 dy12 = _mm_sub_pd(iy1,jy2);
1604 dz12 = _mm_sub_pd(iz1,jz2);
1605 dx13 = _mm_sub_pd(ix1,jx3);
1606 dy13 = _mm_sub_pd(iy1,jy3);
1607 dz13 = _mm_sub_pd(iz1,jz3);
1608 dx21 = _mm_sub_pd(ix2,jx1);
1609 dy21 = _mm_sub_pd(iy2,jy1);
1610 dz21 = _mm_sub_pd(iz2,jz1);
1611 dx22 = _mm_sub_pd(ix2,jx2);
1612 dy22 = _mm_sub_pd(iy2,jy2);
1613 dz22 = _mm_sub_pd(iz2,jz2);
1614 dx23 = _mm_sub_pd(ix2,jx3);
1615 dy23 = _mm_sub_pd(iy2,jy3);
1616 dz23 = _mm_sub_pd(iz2,jz3);
1617 dx31 = _mm_sub_pd(ix3,jx1);
1618 dy31 = _mm_sub_pd(iy3,jy1);
1619 dz31 = _mm_sub_pd(iz3,jz1);
1620 dx32 = _mm_sub_pd(ix3,jx2);
1621 dy32 = _mm_sub_pd(iy3,jy2);
1622 dz32 = _mm_sub_pd(iz3,jz2);
1623 dx33 = _mm_sub_pd(ix3,jx3);
1624 dy33 = _mm_sub_pd(iy3,jy3);
1625 dz33 = _mm_sub_pd(iz3,jz3);
1627 /* Calculate squared distance and things based on it */
1628 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1629 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1630 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1631 rsq13 = gmx_mm_calc_rsq_pd(dx13,dy13,dz13);
1632 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1633 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1634 rsq23 = gmx_mm_calc_rsq_pd(dx23,dy23,dz23);
1635 rsq31 = gmx_mm_calc_rsq_pd(dx31,dy31,dz31);
1636 rsq32 = gmx_mm_calc_rsq_pd(dx32,dy32,dz32);
1637 rsq33 = gmx_mm_calc_rsq_pd(dx33,dy33,dz33);
1639 rinv00 = sse41_invsqrt_d(rsq00);
1640 rinv11 = sse41_invsqrt_d(rsq11);
1641 rinv12 = sse41_invsqrt_d(rsq12);
1642 rinv13 = sse41_invsqrt_d(rsq13);
1643 rinv21 = sse41_invsqrt_d(rsq21);
1644 rinv22 = sse41_invsqrt_d(rsq22);
1645 rinv23 = sse41_invsqrt_d(rsq23);
1646 rinv31 = sse41_invsqrt_d(rsq31);
1647 rinv32 = sse41_invsqrt_d(rsq32);
1648 rinv33 = sse41_invsqrt_d(rsq33);
1650 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1651 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1652 rinvsq13 = _mm_mul_pd(rinv13,rinv13);
1653 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1654 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1655 rinvsq23 = _mm_mul_pd(rinv23,rinv23);
1656 rinvsq31 = _mm_mul_pd(rinv31,rinv31);
1657 rinvsq32 = _mm_mul_pd(rinv32,rinv32);
1658 rinvsq33 = _mm_mul_pd(rinv33,rinv33);
1660 fjx0 = _mm_setzero_pd();
1661 fjy0 = _mm_setzero_pd();
1662 fjz0 = _mm_setzero_pd();
1663 fjx1 = _mm_setzero_pd();
1664 fjy1 = _mm_setzero_pd();
1665 fjz1 = _mm_setzero_pd();
1666 fjx2 = _mm_setzero_pd();
1667 fjy2 = _mm_setzero_pd();
1668 fjz2 = _mm_setzero_pd();
1669 fjx3 = _mm_setzero_pd();
1670 fjy3 = _mm_setzero_pd();
1671 fjz3 = _mm_setzero_pd();
1673 /**************************
1674 * CALCULATE INTERACTIONS *
1675 **************************/
1677 r00 = _mm_mul_pd(rsq00,rinv00);
1679 /* Calculate table index by multiplying r with table scale and truncate to integer */
1680 rt = _mm_mul_pd(r00,vftabscale);
1681 vfitab = _mm_cvttpd_epi32(rt);
1682 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
1683 vfitab = _mm_slli_epi32(vfitab,3);
1685 /* CUBIC SPLINE TABLE DISPERSION */
1686 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
1687 F = _mm_setzero_pd();
1688 GMX_MM_TRANSPOSE2_PD(Y,F);
1689 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
1690 H = _mm_setzero_pd();
1691 GMX_MM_TRANSPOSE2_PD(G,H);
1692 Heps = _mm_mul_pd(vfeps,H);
1693 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
1694 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
1695 fvdw6 = _mm_mul_pd(c6_00,FF);
1697 /* CUBIC SPLINE TABLE REPULSION */
1698 vfitab = _mm_add_epi32(vfitab,ifour);
1699 Y = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
1700 F = _mm_setzero_pd();
1701 GMX_MM_TRANSPOSE2_PD(Y,F);
1702 G = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
1703 H = _mm_setzero_pd();
1704 GMX_MM_TRANSPOSE2_PD(G,H);
1705 Heps = _mm_mul_pd(vfeps,H);
1706 Fp = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
1707 FF = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
1708 fvdw12 = _mm_mul_pd(c12_00,FF);
1709 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
1713 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1715 /* Calculate temporary vectorial force */
1716 tx = _mm_mul_pd(fscal,dx00);
1717 ty = _mm_mul_pd(fscal,dy00);
1718 tz = _mm_mul_pd(fscal,dz00);
1720 /* Update vectorial force */
1721 fix0 = _mm_add_pd(fix0,tx);
1722 fiy0 = _mm_add_pd(fiy0,ty);
1723 fiz0 = _mm_add_pd(fiz0,tz);
1725 fjx0 = _mm_add_pd(fjx0,tx);
1726 fjy0 = _mm_add_pd(fjy0,ty);
1727 fjz0 = _mm_add_pd(fjz0,tz);
1729 /**************************
1730 * CALCULATE INTERACTIONS *
1731 **************************/
1733 /* COULOMB ELECTROSTATICS */
1734 velec = _mm_mul_pd(qq11,rinv11);
1735 felec = _mm_mul_pd(velec,rinvsq11);
1739 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1741 /* Calculate temporary vectorial force */
1742 tx = _mm_mul_pd(fscal,dx11);
1743 ty = _mm_mul_pd(fscal,dy11);
1744 tz = _mm_mul_pd(fscal,dz11);
1746 /* Update vectorial force */
1747 fix1 = _mm_add_pd(fix1,tx);
1748 fiy1 = _mm_add_pd(fiy1,ty);
1749 fiz1 = _mm_add_pd(fiz1,tz);
1751 fjx1 = _mm_add_pd(fjx1,tx);
1752 fjy1 = _mm_add_pd(fjy1,ty);
1753 fjz1 = _mm_add_pd(fjz1,tz);
1755 /**************************
1756 * CALCULATE INTERACTIONS *
1757 **************************/
1759 /* COULOMB ELECTROSTATICS */
1760 velec = _mm_mul_pd(qq12,rinv12);
1761 felec = _mm_mul_pd(velec,rinvsq12);
1765 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1767 /* Calculate temporary vectorial force */
1768 tx = _mm_mul_pd(fscal,dx12);
1769 ty = _mm_mul_pd(fscal,dy12);
1770 tz = _mm_mul_pd(fscal,dz12);
1772 /* Update vectorial force */
1773 fix1 = _mm_add_pd(fix1,tx);
1774 fiy1 = _mm_add_pd(fiy1,ty);
1775 fiz1 = _mm_add_pd(fiz1,tz);
1777 fjx2 = _mm_add_pd(fjx2,tx);
1778 fjy2 = _mm_add_pd(fjy2,ty);
1779 fjz2 = _mm_add_pd(fjz2,tz);
1781 /**************************
1782 * CALCULATE INTERACTIONS *
1783 **************************/
1785 /* COULOMB ELECTROSTATICS */
1786 velec = _mm_mul_pd(qq13,rinv13);
1787 felec = _mm_mul_pd(velec,rinvsq13);
1791 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1793 /* Calculate temporary vectorial force */
1794 tx = _mm_mul_pd(fscal,dx13);
1795 ty = _mm_mul_pd(fscal,dy13);
1796 tz = _mm_mul_pd(fscal,dz13);
1798 /* Update vectorial force */
1799 fix1 = _mm_add_pd(fix1,tx);
1800 fiy1 = _mm_add_pd(fiy1,ty);
1801 fiz1 = _mm_add_pd(fiz1,tz);
1803 fjx3 = _mm_add_pd(fjx3,tx);
1804 fjy3 = _mm_add_pd(fjy3,ty);
1805 fjz3 = _mm_add_pd(fjz3,tz);
1807 /**************************
1808 * CALCULATE INTERACTIONS *
1809 **************************/
1811 /* COULOMB ELECTROSTATICS */
1812 velec = _mm_mul_pd(qq21,rinv21);
1813 felec = _mm_mul_pd(velec,rinvsq21);
1817 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1819 /* Calculate temporary vectorial force */
1820 tx = _mm_mul_pd(fscal,dx21);
1821 ty = _mm_mul_pd(fscal,dy21);
1822 tz = _mm_mul_pd(fscal,dz21);
1824 /* Update vectorial force */
1825 fix2 = _mm_add_pd(fix2,tx);
1826 fiy2 = _mm_add_pd(fiy2,ty);
1827 fiz2 = _mm_add_pd(fiz2,tz);
1829 fjx1 = _mm_add_pd(fjx1,tx);
1830 fjy1 = _mm_add_pd(fjy1,ty);
1831 fjz1 = _mm_add_pd(fjz1,tz);
1833 /**************************
1834 * CALCULATE INTERACTIONS *
1835 **************************/
1837 /* COULOMB ELECTROSTATICS */
1838 velec = _mm_mul_pd(qq22,rinv22);
1839 felec = _mm_mul_pd(velec,rinvsq22);
1843 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1845 /* Calculate temporary vectorial force */
1846 tx = _mm_mul_pd(fscal,dx22);
1847 ty = _mm_mul_pd(fscal,dy22);
1848 tz = _mm_mul_pd(fscal,dz22);
1850 /* Update vectorial force */
1851 fix2 = _mm_add_pd(fix2,tx);
1852 fiy2 = _mm_add_pd(fiy2,ty);
1853 fiz2 = _mm_add_pd(fiz2,tz);
1855 fjx2 = _mm_add_pd(fjx2,tx);
1856 fjy2 = _mm_add_pd(fjy2,ty);
1857 fjz2 = _mm_add_pd(fjz2,tz);
1859 /**************************
1860 * CALCULATE INTERACTIONS *
1861 **************************/
1863 /* COULOMB ELECTROSTATICS */
1864 velec = _mm_mul_pd(qq23,rinv23);
1865 felec = _mm_mul_pd(velec,rinvsq23);
1869 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1871 /* Calculate temporary vectorial force */
1872 tx = _mm_mul_pd(fscal,dx23);
1873 ty = _mm_mul_pd(fscal,dy23);
1874 tz = _mm_mul_pd(fscal,dz23);
1876 /* Update vectorial force */
1877 fix2 = _mm_add_pd(fix2,tx);
1878 fiy2 = _mm_add_pd(fiy2,ty);
1879 fiz2 = _mm_add_pd(fiz2,tz);
1881 fjx3 = _mm_add_pd(fjx3,tx);
1882 fjy3 = _mm_add_pd(fjy3,ty);
1883 fjz3 = _mm_add_pd(fjz3,tz);
1885 /**************************
1886 * CALCULATE INTERACTIONS *
1887 **************************/
1889 /* COULOMB ELECTROSTATICS */
1890 velec = _mm_mul_pd(qq31,rinv31);
1891 felec = _mm_mul_pd(velec,rinvsq31);
1895 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1897 /* Calculate temporary vectorial force */
1898 tx = _mm_mul_pd(fscal,dx31);
1899 ty = _mm_mul_pd(fscal,dy31);
1900 tz = _mm_mul_pd(fscal,dz31);
1902 /* Update vectorial force */
1903 fix3 = _mm_add_pd(fix3,tx);
1904 fiy3 = _mm_add_pd(fiy3,ty);
1905 fiz3 = _mm_add_pd(fiz3,tz);
1907 fjx1 = _mm_add_pd(fjx1,tx);
1908 fjy1 = _mm_add_pd(fjy1,ty);
1909 fjz1 = _mm_add_pd(fjz1,tz);
1911 /**************************
1912 * CALCULATE INTERACTIONS *
1913 **************************/
1915 /* COULOMB ELECTROSTATICS */
1916 velec = _mm_mul_pd(qq32,rinv32);
1917 felec = _mm_mul_pd(velec,rinvsq32);
1921 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1923 /* Calculate temporary vectorial force */
1924 tx = _mm_mul_pd(fscal,dx32);
1925 ty = _mm_mul_pd(fscal,dy32);
1926 tz = _mm_mul_pd(fscal,dz32);
1928 /* Update vectorial force */
1929 fix3 = _mm_add_pd(fix3,tx);
1930 fiy3 = _mm_add_pd(fiy3,ty);
1931 fiz3 = _mm_add_pd(fiz3,tz);
1933 fjx2 = _mm_add_pd(fjx2,tx);
1934 fjy2 = _mm_add_pd(fjy2,ty);
1935 fjz2 = _mm_add_pd(fjz2,tz);
1937 /**************************
1938 * CALCULATE INTERACTIONS *
1939 **************************/
1941 /* COULOMB ELECTROSTATICS */
1942 velec = _mm_mul_pd(qq33,rinv33);
1943 felec = _mm_mul_pd(velec,rinvsq33);
1947 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1949 /* Calculate temporary vectorial force */
1950 tx = _mm_mul_pd(fscal,dx33);
1951 ty = _mm_mul_pd(fscal,dy33);
1952 tz = _mm_mul_pd(fscal,dz33);
1954 /* Update vectorial force */
1955 fix3 = _mm_add_pd(fix3,tx);
1956 fiy3 = _mm_add_pd(fiy3,ty);
1957 fiz3 = _mm_add_pd(fiz3,tz);
1959 fjx3 = _mm_add_pd(fjx3,tx);
1960 fjy3 = _mm_add_pd(fjy3,ty);
1961 fjz3 = _mm_add_pd(fjz3,tz);
1963 gmx_mm_decrement_4rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1965 /* Inner loop uses 294 flops */
1968 /* End of innermost loop */
1970 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1971 f+i_coord_offset,fshift+i_shift_offset);
1973 /* Increment number of inner iterations */
1974 inneriter += j_index_end - j_index_start;
1976 /* Outer loop uses 24 flops */
1979 /* Increment number of outer iterations */
1982 /* Update outer/inner flops */
1984 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_F,outeriter*24 + inneriter*294);