2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwNone_GeomP1P1_VF_sse2_single
38 * Electrostatics interaction: ReactionField
39 * VdW interaction: None
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecRF_VdwNone_GeomP1P1_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
71 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
72 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
73 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
74 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
76 __m128 dummy_mask,cutoff_mask;
77 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
78 __m128 one = _mm_set1_ps(1.0);
79 __m128 two = _mm_set1_ps(2.0);
85 jindex = nlist->jindex;
87 shiftidx = nlist->shift;
89 shiftvec = fr->shift_vec[0];
90 fshift = fr->fshift[0];
91 facel = _mm_set1_ps(fr->epsfac);
92 charge = mdatoms->chargeA;
93 krf = _mm_set1_ps(fr->ic->k_rf);
94 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
95 crf = _mm_set1_ps(fr->ic->c_rf);
97 /* Avoid stupid compiler warnings */
98 jnrA = jnrB = jnrC = jnrD = 0;
107 for(iidx=0;iidx<4*DIM;iidx++)
112 /* Start outer loop over neighborlists */
113 for(iidx=0; iidx<nri; iidx++)
115 /* Load shift vector for this list */
116 i_shift_offset = DIM*shiftidx[iidx];
118 /* Load limits for loop over neighbors */
119 j_index_start = jindex[iidx];
120 j_index_end = jindex[iidx+1];
122 /* Get outer coordinate index */
124 i_coord_offset = DIM*inr;
126 /* Load i particle coords and add shift vector */
127 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
129 fix0 = _mm_setzero_ps();
130 fiy0 = _mm_setzero_ps();
131 fiz0 = _mm_setzero_ps();
133 /* Load parameters for i particles */
134 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
136 /* Reset potential sums */
137 velecsum = _mm_setzero_ps();
139 /* Start inner kernel loop */
140 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
143 /* Get j neighbor index, and coordinate index */
148 j_coord_offsetA = DIM*jnrA;
149 j_coord_offsetB = DIM*jnrB;
150 j_coord_offsetC = DIM*jnrC;
151 j_coord_offsetD = DIM*jnrD;
153 /* load j atom coordinates */
154 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
155 x+j_coord_offsetC,x+j_coord_offsetD,
158 /* Calculate displacement vector */
159 dx00 = _mm_sub_ps(ix0,jx0);
160 dy00 = _mm_sub_ps(iy0,jy0);
161 dz00 = _mm_sub_ps(iz0,jz0);
163 /* Calculate squared distance and things based on it */
164 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
166 rinv00 = gmx_mm_invsqrt_ps(rsq00);
168 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
170 /* Load parameters for j particles */
171 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
172 charge+jnrC+0,charge+jnrD+0);
174 /**************************
175 * CALCULATE INTERACTIONS *
176 **************************/
178 /* Compute parameters for interactions between i and j atoms */
179 qq00 = _mm_mul_ps(iq0,jq0);
181 /* REACTION-FIELD ELECTROSTATICS */
182 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
183 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
185 /* Update potential sum for this i atom from the interaction with this j atom. */
186 velecsum = _mm_add_ps(velecsum,velec);
190 /* Calculate temporary vectorial force */
191 tx = _mm_mul_ps(fscal,dx00);
192 ty = _mm_mul_ps(fscal,dy00);
193 tz = _mm_mul_ps(fscal,dz00);
195 /* Update vectorial force */
196 fix0 = _mm_add_ps(fix0,tx);
197 fiy0 = _mm_add_ps(fiy0,ty);
198 fiz0 = _mm_add_ps(fiz0,tz);
200 fjptrA = f+j_coord_offsetA;
201 fjptrB = f+j_coord_offsetB;
202 fjptrC = f+j_coord_offsetC;
203 fjptrD = f+j_coord_offsetD;
204 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
206 /* Inner loop uses 32 flops */
212 /* Get j neighbor index, and coordinate index */
213 jnrlistA = jjnr[jidx];
214 jnrlistB = jjnr[jidx+1];
215 jnrlistC = jjnr[jidx+2];
216 jnrlistD = jjnr[jidx+3];
217 /* Sign of each element will be negative for non-real atoms.
218 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
219 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
221 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
222 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
223 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
224 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
225 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
226 j_coord_offsetA = DIM*jnrA;
227 j_coord_offsetB = DIM*jnrB;
228 j_coord_offsetC = DIM*jnrC;
229 j_coord_offsetD = DIM*jnrD;
231 /* load j atom coordinates */
232 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
233 x+j_coord_offsetC,x+j_coord_offsetD,
236 /* Calculate displacement vector */
237 dx00 = _mm_sub_ps(ix0,jx0);
238 dy00 = _mm_sub_ps(iy0,jy0);
239 dz00 = _mm_sub_ps(iz0,jz0);
241 /* Calculate squared distance and things based on it */
242 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
244 rinv00 = gmx_mm_invsqrt_ps(rsq00);
246 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
248 /* Load parameters for j particles */
249 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
250 charge+jnrC+0,charge+jnrD+0);
252 /**************************
253 * CALCULATE INTERACTIONS *
254 **************************/
256 /* Compute parameters for interactions between i and j atoms */
257 qq00 = _mm_mul_ps(iq0,jq0);
259 /* REACTION-FIELD ELECTROSTATICS */
260 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
261 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
263 /* Update potential sum for this i atom from the interaction with this j atom. */
264 velec = _mm_andnot_ps(dummy_mask,velec);
265 velecsum = _mm_add_ps(velecsum,velec);
269 fscal = _mm_andnot_ps(dummy_mask,fscal);
271 /* Calculate temporary vectorial force */
272 tx = _mm_mul_ps(fscal,dx00);
273 ty = _mm_mul_ps(fscal,dy00);
274 tz = _mm_mul_ps(fscal,dz00);
276 /* Update vectorial force */
277 fix0 = _mm_add_ps(fix0,tx);
278 fiy0 = _mm_add_ps(fiy0,ty);
279 fiz0 = _mm_add_ps(fiz0,tz);
281 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
282 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
283 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
284 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
285 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
287 /* Inner loop uses 32 flops */
290 /* End of innermost loop */
292 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
293 f+i_coord_offset,fshift+i_shift_offset);
296 /* Update potential energies */
297 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
299 /* Increment number of inner iterations */
300 inneriter += j_index_end - j_index_start;
302 /* Outer loop uses 8 flops */
305 /* Increment number of outer iterations */
308 /* Update outer/inner flops */
310 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*32);
313 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwNone_GeomP1P1_F_sse2_single
314 * Electrostatics interaction: ReactionField
315 * VdW interaction: None
316 * Geometry: Particle-Particle
317 * Calculate force/pot: Force
320 nb_kernel_ElecRF_VdwNone_GeomP1P1_F_sse2_single
321 (t_nblist * gmx_restrict nlist,
322 rvec * gmx_restrict xx,
323 rvec * gmx_restrict ff,
324 t_forcerec * gmx_restrict fr,
325 t_mdatoms * gmx_restrict mdatoms,
326 nb_kernel_data_t * gmx_restrict kernel_data,
327 t_nrnb * gmx_restrict nrnb)
329 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
330 * just 0 for non-waters.
331 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
332 * jnr indices corresponding to data put in the four positions in the SIMD register.
334 int i_shift_offset,i_coord_offset,outeriter,inneriter;
335 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
336 int jnrA,jnrB,jnrC,jnrD;
337 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
338 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
339 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
341 real *shiftvec,*fshift,*x,*f;
342 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
344 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
346 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
347 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
348 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
349 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
350 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
352 __m128 dummy_mask,cutoff_mask;
353 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
354 __m128 one = _mm_set1_ps(1.0);
355 __m128 two = _mm_set1_ps(2.0);
361 jindex = nlist->jindex;
363 shiftidx = nlist->shift;
365 shiftvec = fr->shift_vec[0];
366 fshift = fr->fshift[0];
367 facel = _mm_set1_ps(fr->epsfac);
368 charge = mdatoms->chargeA;
369 krf = _mm_set1_ps(fr->ic->k_rf);
370 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
371 crf = _mm_set1_ps(fr->ic->c_rf);
373 /* Avoid stupid compiler warnings */
374 jnrA = jnrB = jnrC = jnrD = 0;
383 for(iidx=0;iidx<4*DIM;iidx++)
388 /* Start outer loop over neighborlists */
389 for(iidx=0; iidx<nri; iidx++)
391 /* Load shift vector for this list */
392 i_shift_offset = DIM*shiftidx[iidx];
394 /* Load limits for loop over neighbors */
395 j_index_start = jindex[iidx];
396 j_index_end = jindex[iidx+1];
398 /* Get outer coordinate index */
400 i_coord_offset = DIM*inr;
402 /* Load i particle coords and add shift vector */
403 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
405 fix0 = _mm_setzero_ps();
406 fiy0 = _mm_setzero_ps();
407 fiz0 = _mm_setzero_ps();
409 /* Load parameters for i particles */
410 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
412 /* Start inner kernel loop */
413 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
416 /* Get j neighbor index, and coordinate index */
421 j_coord_offsetA = DIM*jnrA;
422 j_coord_offsetB = DIM*jnrB;
423 j_coord_offsetC = DIM*jnrC;
424 j_coord_offsetD = DIM*jnrD;
426 /* load j atom coordinates */
427 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
428 x+j_coord_offsetC,x+j_coord_offsetD,
431 /* Calculate displacement vector */
432 dx00 = _mm_sub_ps(ix0,jx0);
433 dy00 = _mm_sub_ps(iy0,jy0);
434 dz00 = _mm_sub_ps(iz0,jz0);
436 /* Calculate squared distance and things based on it */
437 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
439 rinv00 = gmx_mm_invsqrt_ps(rsq00);
441 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
443 /* Load parameters for j particles */
444 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
445 charge+jnrC+0,charge+jnrD+0);
447 /**************************
448 * CALCULATE INTERACTIONS *
449 **************************/
451 /* Compute parameters for interactions between i and j atoms */
452 qq00 = _mm_mul_ps(iq0,jq0);
454 /* REACTION-FIELD ELECTROSTATICS */
455 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
459 /* Calculate temporary vectorial force */
460 tx = _mm_mul_ps(fscal,dx00);
461 ty = _mm_mul_ps(fscal,dy00);
462 tz = _mm_mul_ps(fscal,dz00);
464 /* Update vectorial force */
465 fix0 = _mm_add_ps(fix0,tx);
466 fiy0 = _mm_add_ps(fiy0,ty);
467 fiz0 = _mm_add_ps(fiz0,tz);
469 fjptrA = f+j_coord_offsetA;
470 fjptrB = f+j_coord_offsetB;
471 fjptrC = f+j_coord_offsetC;
472 fjptrD = f+j_coord_offsetD;
473 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
475 /* Inner loop uses 27 flops */
481 /* Get j neighbor index, and coordinate index */
482 jnrlistA = jjnr[jidx];
483 jnrlistB = jjnr[jidx+1];
484 jnrlistC = jjnr[jidx+2];
485 jnrlistD = jjnr[jidx+3];
486 /* Sign of each element will be negative for non-real atoms.
487 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
488 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
490 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
491 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
492 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
493 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
494 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
495 j_coord_offsetA = DIM*jnrA;
496 j_coord_offsetB = DIM*jnrB;
497 j_coord_offsetC = DIM*jnrC;
498 j_coord_offsetD = DIM*jnrD;
500 /* load j atom coordinates */
501 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
502 x+j_coord_offsetC,x+j_coord_offsetD,
505 /* Calculate displacement vector */
506 dx00 = _mm_sub_ps(ix0,jx0);
507 dy00 = _mm_sub_ps(iy0,jy0);
508 dz00 = _mm_sub_ps(iz0,jz0);
510 /* Calculate squared distance and things based on it */
511 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
513 rinv00 = gmx_mm_invsqrt_ps(rsq00);
515 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
517 /* Load parameters for j particles */
518 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
519 charge+jnrC+0,charge+jnrD+0);
521 /**************************
522 * CALCULATE INTERACTIONS *
523 **************************/
525 /* Compute parameters for interactions between i and j atoms */
526 qq00 = _mm_mul_ps(iq0,jq0);
528 /* REACTION-FIELD ELECTROSTATICS */
529 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
533 fscal = _mm_andnot_ps(dummy_mask,fscal);
535 /* Calculate temporary vectorial force */
536 tx = _mm_mul_ps(fscal,dx00);
537 ty = _mm_mul_ps(fscal,dy00);
538 tz = _mm_mul_ps(fscal,dz00);
540 /* Update vectorial force */
541 fix0 = _mm_add_ps(fix0,tx);
542 fiy0 = _mm_add_ps(fiy0,ty);
543 fiz0 = _mm_add_ps(fiz0,tz);
545 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
546 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
547 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
548 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
549 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
551 /* Inner loop uses 27 flops */
554 /* End of innermost loop */
556 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
557 f+i_coord_offset,fshift+i_shift_offset);
559 /* Increment number of inner iterations */
560 inneriter += j_index_end - j_index_start;
562 /* Outer loop uses 7 flops */
565 /* Increment number of outer iterations */
568 /* Update outer/inner flops */
570 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*27);