2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwCSTab_GeomW3W3_VF_sse2_single
38 * Electrostatics interaction: ReactionField
39 * VdW interaction: CubicSplineTable
40 * Geometry: Water3-Water3
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecRF_VdwCSTab_GeomW3W3_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
63 real shX,shY,shZ,rcutoff_scalar;
64 real *shiftvec,*fshift,*x,*f;
65 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
69 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
71 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
72 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
73 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
74 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
75 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
76 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
77 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
78 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
79 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
80 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
81 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
82 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
83 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
84 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
85 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
86 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
87 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
90 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
93 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
94 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
96 __m128i ifour = _mm_set1_epi32(4);
97 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
99 __m128 dummy_mask,cutoff_mask;
100 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
101 __m128 one = _mm_set1_ps(1.0);
102 __m128 two = _mm_set1_ps(2.0);
108 jindex = nlist->jindex;
110 shiftidx = nlist->shift;
112 shiftvec = fr->shift_vec[0];
113 fshift = fr->fshift[0];
114 facel = _mm_set1_ps(fr->epsfac);
115 charge = mdatoms->chargeA;
116 krf = _mm_set1_ps(fr->ic->k_rf);
117 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
118 crf = _mm_set1_ps(fr->ic->c_rf);
119 nvdwtype = fr->ntype;
121 vdwtype = mdatoms->typeA;
123 vftab = kernel_data->table_vdw->data;
124 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
126 /* Setup water-specific parameters */
127 inr = nlist->iinr[0];
128 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
129 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
130 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
131 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
133 jq0 = _mm_set1_ps(charge[inr+0]);
134 jq1 = _mm_set1_ps(charge[inr+1]);
135 jq2 = _mm_set1_ps(charge[inr+2]);
136 vdwjidx0A = 2*vdwtype[inr+0];
137 qq00 = _mm_mul_ps(iq0,jq0);
138 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
139 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
140 qq01 = _mm_mul_ps(iq0,jq1);
141 qq02 = _mm_mul_ps(iq0,jq2);
142 qq10 = _mm_mul_ps(iq1,jq0);
143 qq11 = _mm_mul_ps(iq1,jq1);
144 qq12 = _mm_mul_ps(iq1,jq2);
145 qq20 = _mm_mul_ps(iq2,jq0);
146 qq21 = _mm_mul_ps(iq2,jq1);
147 qq22 = _mm_mul_ps(iq2,jq2);
149 /* Avoid stupid compiler warnings */
150 jnrA = jnrB = jnrC = jnrD = 0;
159 /* Start outer loop over neighborlists */
160 for(iidx=0; iidx<nri; iidx++)
162 /* Load shift vector for this list */
163 i_shift_offset = DIM*shiftidx[iidx];
164 shX = shiftvec[i_shift_offset+XX];
165 shY = shiftvec[i_shift_offset+YY];
166 shZ = shiftvec[i_shift_offset+ZZ];
168 /* Load limits for loop over neighbors */
169 j_index_start = jindex[iidx];
170 j_index_end = jindex[iidx+1];
172 /* Get outer coordinate index */
174 i_coord_offset = DIM*inr;
176 /* Load i particle coords and add shift vector */
177 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
178 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
179 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
180 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
181 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
182 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
183 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
184 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
185 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
187 fix0 = _mm_setzero_ps();
188 fiy0 = _mm_setzero_ps();
189 fiz0 = _mm_setzero_ps();
190 fix1 = _mm_setzero_ps();
191 fiy1 = _mm_setzero_ps();
192 fiz1 = _mm_setzero_ps();
193 fix2 = _mm_setzero_ps();
194 fiy2 = _mm_setzero_ps();
195 fiz2 = _mm_setzero_ps();
197 /* Reset potential sums */
198 velecsum = _mm_setzero_ps();
199 vvdwsum = _mm_setzero_ps();
201 /* Start inner kernel loop */
202 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
205 /* Get j neighbor index, and coordinate index */
211 j_coord_offsetA = DIM*jnrA;
212 j_coord_offsetB = DIM*jnrB;
213 j_coord_offsetC = DIM*jnrC;
214 j_coord_offsetD = DIM*jnrD;
216 /* load j atom coordinates */
217 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
218 x+j_coord_offsetC,x+j_coord_offsetD,
219 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
221 /* Calculate displacement vector */
222 dx00 = _mm_sub_ps(ix0,jx0);
223 dy00 = _mm_sub_ps(iy0,jy0);
224 dz00 = _mm_sub_ps(iz0,jz0);
225 dx01 = _mm_sub_ps(ix0,jx1);
226 dy01 = _mm_sub_ps(iy0,jy1);
227 dz01 = _mm_sub_ps(iz0,jz1);
228 dx02 = _mm_sub_ps(ix0,jx2);
229 dy02 = _mm_sub_ps(iy0,jy2);
230 dz02 = _mm_sub_ps(iz0,jz2);
231 dx10 = _mm_sub_ps(ix1,jx0);
232 dy10 = _mm_sub_ps(iy1,jy0);
233 dz10 = _mm_sub_ps(iz1,jz0);
234 dx11 = _mm_sub_ps(ix1,jx1);
235 dy11 = _mm_sub_ps(iy1,jy1);
236 dz11 = _mm_sub_ps(iz1,jz1);
237 dx12 = _mm_sub_ps(ix1,jx2);
238 dy12 = _mm_sub_ps(iy1,jy2);
239 dz12 = _mm_sub_ps(iz1,jz2);
240 dx20 = _mm_sub_ps(ix2,jx0);
241 dy20 = _mm_sub_ps(iy2,jy0);
242 dz20 = _mm_sub_ps(iz2,jz0);
243 dx21 = _mm_sub_ps(ix2,jx1);
244 dy21 = _mm_sub_ps(iy2,jy1);
245 dz21 = _mm_sub_ps(iz2,jz1);
246 dx22 = _mm_sub_ps(ix2,jx2);
247 dy22 = _mm_sub_ps(iy2,jy2);
248 dz22 = _mm_sub_ps(iz2,jz2);
250 /* Calculate squared distance and things based on it */
251 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
252 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
253 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
254 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
255 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
256 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
257 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
258 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
259 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
261 rinv00 = gmx_mm_invsqrt_ps(rsq00);
262 rinv01 = gmx_mm_invsqrt_ps(rsq01);
263 rinv02 = gmx_mm_invsqrt_ps(rsq02);
264 rinv10 = gmx_mm_invsqrt_ps(rsq10);
265 rinv11 = gmx_mm_invsqrt_ps(rsq11);
266 rinv12 = gmx_mm_invsqrt_ps(rsq12);
267 rinv20 = gmx_mm_invsqrt_ps(rsq20);
268 rinv21 = gmx_mm_invsqrt_ps(rsq21);
269 rinv22 = gmx_mm_invsqrt_ps(rsq22);
271 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
272 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
273 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
274 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
275 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
276 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
277 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
278 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
279 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
281 fjx0 = _mm_setzero_ps();
282 fjy0 = _mm_setzero_ps();
283 fjz0 = _mm_setzero_ps();
284 fjx1 = _mm_setzero_ps();
285 fjy1 = _mm_setzero_ps();
286 fjz1 = _mm_setzero_ps();
287 fjx2 = _mm_setzero_ps();
288 fjy2 = _mm_setzero_ps();
289 fjz2 = _mm_setzero_ps();
291 /**************************
292 * CALCULATE INTERACTIONS *
293 **************************/
295 r00 = _mm_mul_ps(rsq00,rinv00);
297 /* Calculate table index by multiplying r with table scale and truncate to integer */
298 rt = _mm_mul_ps(r00,vftabscale);
299 vfitab = _mm_cvttps_epi32(rt);
300 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
301 vfitab = _mm_slli_epi32(vfitab,3);
303 /* REACTION-FIELD ELECTROSTATICS */
304 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
305 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
307 /* CUBIC SPLINE TABLE DISPERSION */
308 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
309 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
310 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
311 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
312 _MM_TRANSPOSE4_PS(Y,F,G,H);
313 Heps = _mm_mul_ps(vfeps,H);
314 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
315 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
316 vvdw6 = _mm_mul_ps(c6_00,VV);
317 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
318 fvdw6 = _mm_mul_ps(c6_00,FF);
320 /* CUBIC SPLINE TABLE REPULSION */
321 vfitab = _mm_add_epi32(vfitab,ifour);
322 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
323 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
324 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
325 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
326 _MM_TRANSPOSE4_PS(Y,F,G,H);
327 Heps = _mm_mul_ps(vfeps,H);
328 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
329 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
330 vvdw12 = _mm_mul_ps(c12_00,VV);
331 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
332 fvdw12 = _mm_mul_ps(c12_00,FF);
333 vvdw = _mm_add_ps(vvdw12,vvdw6);
334 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
336 /* Update potential sum for this i atom from the interaction with this j atom. */
337 velecsum = _mm_add_ps(velecsum,velec);
338 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
340 fscal = _mm_add_ps(felec,fvdw);
342 /* Calculate temporary vectorial force */
343 tx = _mm_mul_ps(fscal,dx00);
344 ty = _mm_mul_ps(fscal,dy00);
345 tz = _mm_mul_ps(fscal,dz00);
347 /* Update vectorial force */
348 fix0 = _mm_add_ps(fix0,tx);
349 fiy0 = _mm_add_ps(fiy0,ty);
350 fiz0 = _mm_add_ps(fiz0,tz);
352 fjx0 = _mm_add_ps(fjx0,tx);
353 fjy0 = _mm_add_ps(fjy0,ty);
354 fjz0 = _mm_add_ps(fjz0,tz);
356 /**************************
357 * CALCULATE INTERACTIONS *
358 **************************/
360 /* REACTION-FIELD ELECTROSTATICS */
361 velec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_add_ps(rinv01,_mm_mul_ps(krf,rsq01)),crf));
362 felec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_mul_ps(rinv01,rinvsq01),krf2));
364 /* Update potential sum for this i atom from the interaction with this j atom. */
365 velecsum = _mm_add_ps(velecsum,velec);
369 /* Calculate temporary vectorial force */
370 tx = _mm_mul_ps(fscal,dx01);
371 ty = _mm_mul_ps(fscal,dy01);
372 tz = _mm_mul_ps(fscal,dz01);
374 /* Update vectorial force */
375 fix0 = _mm_add_ps(fix0,tx);
376 fiy0 = _mm_add_ps(fiy0,ty);
377 fiz0 = _mm_add_ps(fiz0,tz);
379 fjx1 = _mm_add_ps(fjx1,tx);
380 fjy1 = _mm_add_ps(fjy1,ty);
381 fjz1 = _mm_add_ps(fjz1,tz);
383 /**************************
384 * CALCULATE INTERACTIONS *
385 **************************/
387 /* REACTION-FIELD ELECTROSTATICS */
388 velec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_add_ps(rinv02,_mm_mul_ps(krf,rsq02)),crf));
389 felec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_mul_ps(rinv02,rinvsq02),krf2));
391 /* Update potential sum for this i atom from the interaction with this j atom. */
392 velecsum = _mm_add_ps(velecsum,velec);
396 /* Calculate temporary vectorial force */
397 tx = _mm_mul_ps(fscal,dx02);
398 ty = _mm_mul_ps(fscal,dy02);
399 tz = _mm_mul_ps(fscal,dz02);
401 /* Update vectorial force */
402 fix0 = _mm_add_ps(fix0,tx);
403 fiy0 = _mm_add_ps(fiy0,ty);
404 fiz0 = _mm_add_ps(fiz0,tz);
406 fjx2 = _mm_add_ps(fjx2,tx);
407 fjy2 = _mm_add_ps(fjy2,ty);
408 fjz2 = _mm_add_ps(fjz2,tz);
410 /**************************
411 * CALCULATE INTERACTIONS *
412 **************************/
414 /* REACTION-FIELD ELECTROSTATICS */
415 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_add_ps(rinv10,_mm_mul_ps(krf,rsq10)),crf));
416 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
418 /* Update potential sum for this i atom from the interaction with this j atom. */
419 velecsum = _mm_add_ps(velecsum,velec);
423 /* Calculate temporary vectorial force */
424 tx = _mm_mul_ps(fscal,dx10);
425 ty = _mm_mul_ps(fscal,dy10);
426 tz = _mm_mul_ps(fscal,dz10);
428 /* Update vectorial force */
429 fix1 = _mm_add_ps(fix1,tx);
430 fiy1 = _mm_add_ps(fiy1,ty);
431 fiz1 = _mm_add_ps(fiz1,tz);
433 fjx0 = _mm_add_ps(fjx0,tx);
434 fjy0 = _mm_add_ps(fjy0,ty);
435 fjz0 = _mm_add_ps(fjz0,tz);
437 /**************************
438 * CALCULATE INTERACTIONS *
439 **************************/
441 /* REACTION-FIELD ELECTROSTATICS */
442 velec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_add_ps(rinv11,_mm_mul_ps(krf,rsq11)),crf));
443 felec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_mul_ps(rinv11,rinvsq11),krf2));
445 /* Update potential sum for this i atom from the interaction with this j atom. */
446 velecsum = _mm_add_ps(velecsum,velec);
450 /* Calculate temporary vectorial force */
451 tx = _mm_mul_ps(fscal,dx11);
452 ty = _mm_mul_ps(fscal,dy11);
453 tz = _mm_mul_ps(fscal,dz11);
455 /* Update vectorial force */
456 fix1 = _mm_add_ps(fix1,tx);
457 fiy1 = _mm_add_ps(fiy1,ty);
458 fiz1 = _mm_add_ps(fiz1,tz);
460 fjx1 = _mm_add_ps(fjx1,tx);
461 fjy1 = _mm_add_ps(fjy1,ty);
462 fjz1 = _mm_add_ps(fjz1,tz);
464 /**************************
465 * CALCULATE INTERACTIONS *
466 **************************/
468 /* REACTION-FIELD ELECTROSTATICS */
469 velec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_add_ps(rinv12,_mm_mul_ps(krf,rsq12)),crf));
470 felec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_mul_ps(rinv12,rinvsq12),krf2));
472 /* Update potential sum for this i atom from the interaction with this j atom. */
473 velecsum = _mm_add_ps(velecsum,velec);
477 /* Calculate temporary vectorial force */
478 tx = _mm_mul_ps(fscal,dx12);
479 ty = _mm_mul_ps(fscal,dy12);
480 tz = _mm_mul_ps(fscal,dz12);
482 /* Update vectorial force */
483 fix1 = _mm_add_ps(fix1,tx);
484 fiy1 = _mm_add_ps(fiy1,ty);
485 fiz1 = _mm_add_ps(fiz1,tz);
487 fjx2 = _mm_add_ps(fjx2,tx);
488 fjy2 = _mm_add_ps(fjy2,ty);
489 fjz2 = _mm_add_ps(fjz2,tz);
491 /**************************
492 * CALCULATE INTERACTIONS *
493 **************************/
495 /* REACTION-FIELD ELECTROSTATICS */
496 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_add_ps(rinv20,_mm_mul_ps(krf,rsq20)),crf));
497 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
499 /* Update potential sum for this i atom from the interaction with this j atom. */
500 velecsum = _mm_add_ps(velecsum,velec);
504 /* Calculate temporary vectorial force */
505 tx = _mm_mul_ps(fscal,dx20);
506 ty = _mm_mul_ps(fscal,dy20);
507 tz = _mm_mul_ps(fscal,dz20);
509 /* Update vectorial force */
510 fix2 = _mm_add_ps(fix2,tx);
511 fiy2 = _mm_add_ps(fiy2,ty);
512 fiz2 = _mm_add_ps(fiz2,tz);
514 fjx0 = _mm_add_ps(fjx0,tx);
515 fjy0 = _mm_add_ps(fjy0,ty);
516 fjz0 = _mm_add_ps(fjz0,tz);
518 /**************************
519 * CALCULATE INTERACTIONS *
520 **************************/
522 /* REACTION-FIELD ELECTROSTATICS */
523 velec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_add_ps(rinv21,_mm_mul_ps(krf,rsq21)),crf));
524 felec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_mul_ps(rinv21,rinvsq21),krf2));
526 /* Update potential sum for this i atom from the interaction with this j atom. */
527 velecsum = _mm_add_ps(velecsum,velec);
531 /* Calculate temporary vectorial force */
532 tx = _mm_mul_ps(fscal,dx21);
533 ty = _mm_mul_ps(fscal,dy21);
534 tz = _mm_mul_ps(fscal,dz21);
536 /* Update vectorial force */
537 fix2 = _mm_add_ps(fix2,tx);
538 fiy2 = _mm_add_ps(fiy2,ty);
539 fiz2 = _mm_add_ps(fiz2,tz);
541 fjx1 = _mm_add_ps(fjx1,tx);
542 fjy1 = _mm_add_ps(fjy1,ty);
543 fjz1 = _mm_add_ps(fjz1,tz);
545 /**************************
546 * CALCULATE INTERACTIONS *
547 **************************/
549 /* REACTION-FIELD ELECTROSTATICS */
550 velec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_add_ps(rinv22,_mm_mul_ps(krf,rsq22)),crf));
551 felec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_mul_ps(rinv22,rinvsq22),krf2));
553 /* Update potential sum for this i atom from the interaction with this j atom. */
554 velecsum = _mm_add_ps(velecsum,velec);
558 /* Calculate temporary vectorial force */
559 tx = _mm_mul_ps(fscal,dx22);
560 ty = _mm_mul_ps(fscal,dy22);
561 tz = _mm_mul_ps(fscal,dz22);
563 /* Update vectorial force */
564 fix2 = _mm_add_ps(fix2,tx);
565 fiy2 = _mm_add_ps(fiy2,ty);
566 fiz2 = _mm_add_ps(fiz2,tz);
568 fjx2 = _mm_add_ps(fjx2,tx);
569 fjy2 = _mm_add_ps(fjy2,ty);
570 fjz2 = _mm_add_ps(fjz2,tz);
572 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
573 f+j_coord_offsetC,f+j_coord_offsetD,
574 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
576 /* Inner loop uses 323 flops */
582 /* Get j neighbor index, and coordinate index */
588 /* Sign of each element will be negative for non-real atoms.
589 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
590 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
592 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
593 jnrA = (jnrA>=0) ? jnrA : 0;
594 jnrB = (jnrB>=0) ? jnrB : 0;
595 jnrC = (jnrC>=0) ? jnrC : 0;
596 jnrD = (jnrD>=0) ? jnrD : 0;
598 j_coord_offsetA = DIM*jnrA;
599 j_coord_offsetB = DIM*jnrB;
600 j_coord_offsetC = DIM*jnrC;
601 j_coord_offsetD = DIM*jnrD;
603 /* load j atom coordinates */
604 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
605 x+j_coord_offsetC,x+j_coord_offsetD,
606 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
608 /* Calculate displacement vector */
609 dx00 = _mm_sub_ps(ix0,jx0);
610 dy00 = _mm_sub_ps(iy0,jy0);
611 dz00 = _mm_sub_ps(iz0,jz0);
612 dx01 = _mm_sub_ps(ix0,jx1);
613 dy01 = _mm_sub_ps(iy0,jy1);
614 dz01 = _mm_sub_ps(iz0,jz1);
615 dx02 = _mm_sub_ps(ix0,jx2);
616 dy02 = _mm_sub_ps(iy0,jy2);
617 dz02 = _mm_sub_ps(iz0,jz2);
618 dx10 = _mm_sub_ps(ix1,jx0);
619 dy10 = _mm_sub_ps(iy1,jy0);
620 dz10 = _mm_sub_ps(iz1,jz0);
621 dx11 = _mm_sub_ps(ix1,jx1);
622 dy11 = _mm_sub_ps(iy1,jy1);
623 dz11 = _mm_sub_ps(iz1,jz1);
624 dx12 = _mm_sub_ps(ix1,jx2);
625 dy12 = _mm_sub_ps(iy1,jy2);
626 dz12 = _mm_sub_ps(iz1,jz2);
627 dx20 = _mm_sub_ps(ix2,jx0);
628 dy20 = _mm_sub_ps(iy2,jy0);
629 dz20 = _mm_sub_ps(iz2,jz0);
630 dx21 = _mm_sub_ps(ix2,jx1);
631 dy21 = _mm_sub_ps(iy2,jy1);
632 dz21 = _mm_sub_ps(iz2,jz1);
633 dx22 = _mm_sub_ps(ix2,jx2);
634 dy22 = _mm_sub_ps(iy2,jy2);
635 dz22 = _mm_sub_ps(iz2,jz2);
637 /* Calculate squared distance and things based on it */
638 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
639 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
640 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
641 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
642 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
643 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
644 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
645 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
646 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
648 rinv00 = gmx_mm_invsqrt_ps(rsq00);
649 rinv01 = gmx_mm_invsqrt_ps(rsq01);
650 rinv02 = gmx_mm_invsqrt_ps(rsq02);
651 rinv10 = gmx_mm_invsqrt_ps(rsq10);
652 rinv11 = gmx_mm_invsqrt_ps(rsq11);
653 rinv12 = gmx_mm_invsqrt_ps(rsq12);
654 rinv20 = gmx_mm_invsqrt_ps(rsq20);
655 rinv21 = gmx_mm_invsqrt_ps(rsq21);
656 rinv22 = gmx_mm_invsqrt_ps(rsq22);
658 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
659 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
660 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
661 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
662 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
663 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
664 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
665 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
666 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
668 fjx0 = _mm_setzero_ps();
669 fjy0 = _mm_setzero_ps();
670 fjz0 = _mm_setzero_ps();
671 fjx1 = _mm_setzero_ps();
672 fjy1 = _mm_setzero_ps();
673 fjz1 = _mm_setzero_ps();
674 fjx2 = _mm_setzero_ps();
675 fjy2 = _mm_setzero_ps();
676 fjz2 = _mm_setzero_ps();
678 /**************************
679 * CALCULATE INTERACTIONS *
680 **************************/
682 r00 = _mm_mul_ps(rsq00,rinv00);
683 r00 = _mm_andnot_ps(dummy_mask,r00);
685 /* Calculate table index by multiplying r with table scale and truncate to integer */
686 rt = _mm_mul_ps(r00,vftabscale);
687 vfitab = _mm_cvttps_epi32(rt);
688 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
689 vfitab = _mm_slli_epi32(vfitab,3);
691 /* REACTION-FIELD ELECTROSTATICS */
692 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
693 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
695 /* CUBIC SPLINE TABLE DISPERSION */
696 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
697 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
698 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
699 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
700 _MM_TRANSPOSE4_PS(Y,F,G,H);
701 Heps = _mm_mul_ps(vfeps,H);
702 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
703 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
704 vvdw6 = _mm_mul_ps(c6_00,VV);
705 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
706 fvdw6 = _mm_mul_ps(c6_00,FF);
708 /* CUBIC SPLINE TABLE REPULSION */
709 vfitab = _mm_add_epi32(vfitab,ifour);
710 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
711 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
712 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
713 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
714 _MM_TRANSPOSE4_PS(Y,F,G,H);
715 Heps = _mm_mul_ps(vfeps,H);
716 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
717 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
718 vvdw12 = _mm_mul_ps(c12_00,VV);
719 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
720 fvdw12 = _mm_mul_ps(c12_00,FF);
721 vvdw = _mm_add_ps(vvdw12,vvdw6);
722 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
724 /* Update potential sum for this i atom from the interaction with this j atom. */
725 velec = _mm_andnot_ps(dummy_mask,velec);
726 velecsum = _mm_add_ps(velecsum,velec);
727 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
728 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
730 fscal = _mm_add_ps(felec,fvdw);
732 fscal = _mm_andnot_ps(dummy_mask,fscal);
734 /* Calculate temporary vectorial force */
735 tx = _mm_mul_ps(fscal,dx00);
736 ty = _mm_mul_ps(fscal,dy00);
737 tz = _mm_mul_ps(fscal,dz00);
739 /* Update vectorial force */
740 fix0 = _mm_add_ps(fix0,tx);
741 fiy0 = _mm_add_ps(fiy0,ty);
742 fiz0 = _mm_add_ps(fiz0,tz);
744 fjx0 = _mm_add_ps(fjx0,tx);
745 fjy0 = _mm_add_ps(fjy0,ty);
746 fjz0 = _mm_add_ps(fjz0,tz);
748 /**************************
749 * CALCULATE INTERACTIONS *
750 **************************/
752 /* REACTION-FIELD ELECTROSTATICS */
753 velec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_add_ps(rinv01,_mm_mul_ps(krf,rsq01)),crf));
754 felec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_mul_ps(rinv01,rinvsq01),krf2));
756 /* Update potential sum for this i atom from the interaction with this j atom. */
757 velec = _mm_andnot_ps(dummy_mask,velec);
758 velecsum = _mm_add_ps(velecsum,velec);
762 fscal = _mm_andnot_ps(dummy_mask,fscal);
764 /* Calculate temporary vectorial force */
765 tx = _mm_mul_ps(fscal,dx01);
766 ty = _mm_mul_ps(fscal,dy01);
767 tz = _mm_mul_ps(fscal,dz01);
769 /* Update vectorial force */
770 fix0 = _mm_add_ps(fix0,tx);
771 fiy0 = _mm_add_ps(fiy0,ty);
772 fiz0 = _mm_add_ps(fiz0,tz);
774 fjx1 = _mm_add_ps(fjx1,tx);
775 fjy1 = _mm_add_ps(fjy1,ty);
776 fjz1 = _mm_add_ps(fjz1,tz);
778 /**************************
779 * CALCULATE INTERACTIONS *
780 **************************/
782 /* REACTION-FIELD ELECTROSTATICS */
783 velec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_add_ps(rinv02,_mm_mul_ps(krf,rsq02)),crf));
784 felec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_mul_ps(rinv02,rinvsq02),krf2));
786 /* Update potential sum for this i atom from the interaction with this j atom. */
787 velec = _mm_andnot_ps(dummy_mask,velec);
788 velecsum = _mm_add_ps(velecsum,velec);
792 fscal = _mm_andnot_ps(dummy_mask,fscal);
794 /* Calculate temporary vectorial force */
795 tx = _mm_mul_ps(fscal,dx02);
796 ty = _mm_mul_ps(fscal,dy02);
797 tz = _mm_mul_ps(fscal,dz02);
799 /* Update vectorial force */
800 fix0 = _mm_add_ps(fix0,tx);
801 fiy0 = _mm_add_ps(fiy0,ty);
802 fiz0 = _mm_add_ps(fiz0,tz);
804 fjx2 = _mm_add_ps(fjx2,tx);
805 fjy2 = _mm_add_ps(fjy2,ty);
806 fjz2 = _mm_add_ps(fjz2,tz);
808 /**************************
809 * CALCULATE INTERACTIONS *
810 **************************/
812 /* REACTION-FIELD ELECTROSTATICS */
813 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_add_ps(rinv10,_mm_mul_ps(krf,rsq10)),crf));
814 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
816 /* Update potential sum for this i atom from the interaction with this j atom. */
817 velec = _mm_andnot_ps(dummy_mask,velec);
818 velecsum = _mm_add_ps(velecsum,velec);
822 fscal = _mm_andnot_ps(dummy_mask,fscal);
824 /* Calculate temporary vectorial force */
825 tx = _mm_mul_ps(fscal,dx10);
826 ty = _mm_mul_ps(fscal,dy10);
827 tz = _mm_mul_ps(fscal,dz10);
829 /* Update vectorial force */
830 fix1 = _mm_add_ps(fix1,tx);
831 fiy1 = _mm_add_ps(fiy1,ty);
832 fiz1 = _mm_add_ps(fiz1,tz);
834 fjx0 = _mm_add_ps(fjx0,tx);
835 fjy0 = _mm_add_ps(fjy0,ty);
836 fjz0 = _mm_add_ps(fjz0,tz);
838 /**************************
839 * CALCULATE INTERACTIONS *
840 **************************/
842 /* REACTION-FIELD ELECTROSTATICS */
843 velec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_add_ps(rinv11,_mm_mul_ps(krf,rsq11)),crf));
844 felec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_mul_ps(rinv11,rinvsq11),krf2));
846 /* Update potential sum for this i atom from the interaction with this j atom. */
847 velec = _mm_andnot_ps(dummy_mask,velec);
848 velecsum = _mm_add_ps(velecsum,velec);
852 fscal = _mm_andnot_ps(dummy_mask,fscal);
854 /* Calculate temporary vectorial force */
855 tx = _mm_mul_ps(fscal,dx11);
856 ty = _mm_mul_ps(fscal,dy11);
857 tz = _mm_mul_ps(fscal,dz11);
859 /* Update vectorial force */
860 fix1 = _mm_add_ps(fix1,tx);
861 fiy1 = _mm_add_ps(fiy1,ty);
862 fiz1 = _mm_add_ps(fiz1,tz);
864 fjx1 = _mm_add_ps(fjx1,tx);
865 fjy1 = _mm_add_ps(fjy1,ty);
866 fjz1 = _mm_add_ps(fjz1,tz);
868 /**************************
869 * CALCULATE INTERACTIONS *
870 **************************/
872 /* REACTION-FIELD ELECTROSTATICS */
873 velec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_add_ps(rinv12,_mm_mul_ps(krf,rsq12)),crf));
874 felec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_mul_ps(rinv12,rinvsq12),krf2));
876 /* Update potential sum for this i atom from the interaction with this j atom. */
877 velec = _mm_andnot_ps(dummy_mask,velec);
878 velecsum = _mm_add_ps(velecsum,velec);
882 fscal = _mm_andnot_ps(dummy_mask,fscal);
884 /* Calculate temporary vectorial force */
885 tx = _mm_mul_ps(fscal,dx12);
886 ty = _mm_mul_ps(fscal,dy12);
887 tz = _mm_mul_ps(fscal,dz12);
889 /* Update vectorial force */
890 fix1 = _mm_add_ps(fix1,tx);
891 fiy1 = _mm_add_ps(fiy1,ty);
892 fiz1 = _mm_add_ps(fiz1,tz);
894 fjx2 = _mm_add_ps(fjx2,tx);
895 fjy2 = _mm_add_ps(fjy2,ty);
896 fjz2 = _mm_add_ps(fjz2,tz);
898 /**************************
899 * CALCULATE INTERACTIONS *
900 **************************/
902 /* REACTION-FIELD ELECTROSTATICS */
903 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_add_ps(rinv20,_mm_mul_ps(krf,rsq20)),crf));
904 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
906 /* Update potential sum for this i atom from the interaction with this j atom. */
907 velec = _mm_andnot_ps(dummy_mask,velec);
908 velecsum = _mm_add_ps(velecsum,velec);
912 fscal = _mm_andnot_ps(dummy_mask,fscal);
914 /* Calculate temporary vectorial force */
915 tx = _mm_mul_ps(fscal,dx20);
916 ty = _mm_mul_ps(fscal,dy20);
917 tz = _mm_mul_ps(fscal,dz20);
919 /* Update vectorial force */
920 fix2 = _mm_add_ps(fix2,tx);
921 fiy2 = _mm_add_ps(fiy2,ty);
922 fiz2 = _mm_add_ps(fiz2,tz);
924 fjx0 = _mm_add_ps(fjx0,tx);
925 fjy0 = _mm_add_ps(fjy0,ty);
926 fjz0 = _mm_add_ps(fjz0,tz);
928 /**************************
929 * CALCULATE INTERACTIONS *
930 **************************/
932 /* REACTION-FIELD ELECTROSTATICS */
933 velec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_add_ps(rinv21,_mm_mul_ps(krf,rsq21)),crf));
934 felec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_mul_ps(rinv21,rinvsq21),krf2));
936 /* Update potential sum for this i atom from the interaction with this j atom. */
937 velec = _mm_andnot_ps(dummy_mask,velec);
938 velecsum = _mm_add_ps(velecsum,velec);
942 fscal = _mm_andnot_ps(dummy_mask,fscal);
944 /* Calculate temporary vectorial force */
945 tx = _mm_mul_ps(fscal,dx21);
946 ty = _mm_mul_ps(fscal,dy21);
947 tz = _mm_mul_ps(fscal,dz21);
949 /* Update vectorial force */
950 fix2 = _mm_add_ps(fix2,tx);
951 fiy2 = _mm_add_ps(fiy2,ty);
952 fiz2 = _mm_add_ps(fiz2,tz);
954 fjx1 = _mm_add_ps(fjx1,tx);
955 fjy1 = _mm_add_ps(fjy1,ty);
956 fjz1 = _mm_add_ps(fjz1,tz);
958 /**************************
959 * CALCULATE INTERACTIONS *
960 **************************/
962 /* REACTION-FIELD ELECTROSTATICS */
963 velec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_add_ps(rinv22,_mm_mul_ps(krf,rsq22)),crf));
964 felec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_mul_ps(rinv22,rinvsq22),krf2));
966 /* Update potential sum for this i atom from the interaction with this j atom. */
967 velec = _mm_andnot_ps(dummy_mask,velec);
968 velecsum = _mm_add_ps(velecsum,velec);
972 fscal = _mm_andnot_ps(dummy_mask,fscal);
974 /* Calculate temporary vectorial force */
975 tx = _mm_mul_ps(fscal,dx22);
976 ty = _mm_mul_ps(fscal,dy22);
977 tz = _mm_mul_ps(fscal,dz22);
979 /* Update vectorial force */
980 fix2 = _mm_add_ps(fix2,tx);
981 fiy2 = _mm_add_ps(fiy2,ty);
982 fiz2 = _mm_add_ps(fiz2,tz);
984 fjx2 = _mm_add_ps(fjx2,tx);
985 fjy2 = _mm_add_ps(fjy2,ty);
986 fjz2 = _mm_add_ps(fjz2,tz);
988 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
989 f+j_coord_offsetC,f+j_coord_offsetD,
990 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
992 /* Inner loop uses 324 flops */
995 /* End of innermost loop */
997 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
998 f+i_coord_offset,fshift+i_shift_offset);
1001 /* Update potential energies */
1002 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1003 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1005 /* Increment number of inner iterations */
1006 inneriter += j_index_end - j_index_start;
1008 /* Outer loop uses 29 flops */
1011 /* Increment number of outer iterations */
1014 /* Update outer/inner flops */
1016 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*29 + inneriter*324);
1019 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwCSTab_GeomW3W3_F_sse2_single
1020 * Electrostatics interaction: ReactionField
1021 * VdW interaction: CubicSplineTable
1022 * Geometry: Water3-Water3
1023 * Calculate force/pot: Force
1026 nb_kernel_ElecRF_VdwCSTab_GeomW3W3_F_sse2_single
1027 (t_nblist * gmx_restrict nlist,
1028 rvec * gmx_restrict xx,
1029 rvec * gmx_restrict ff,
1030 t_forcerec * gmx_restrict fr,
1031 t_mdatoms * gmx_restrict mdatoms,
1032 nb_kernel_data_t * gmx_restrict kernel_data,
1033 t_nrnb * gmx_restrict nrnb)
1035 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1036 * just 0 for non-waters.
1037 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
1038 * jnr indices corresponding to data put in the four positions in the SIMD register.
1040 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1041 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1042 int jnrA,jnrB,jnrC,jnrD;
1043 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1044 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1045 real shX,shY,shZ,rcutoff_scalar;
1046 real *shiftvec,*fshift,*x,*f;
1047 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1049 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1051 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1053 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1054 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1055 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1056 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1057 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1058 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1059 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1060 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1061 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1062 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1063 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1064 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1065 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1066 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1067 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1068 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1069 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
1072 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1075 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
1076 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
1078 __m128i ifour = _mm_set1_epi32(4);
1079 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
1081 __m128 dummy_mask,cutoff_mask;
1082 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
1083 __m128 one = _mm_set1_ps(1.0);
1084 __m128 two = _mm_set1_ps(2.0);
1090 jindex = nlist->jindex;
1092 shiftidx = nlist->shift;
1094 shiftvec = fr->shift_vec[0];
1095 fshift = fr->fshift[0];
1096 facel = _mm_set1_ps(fr->epsfac);
1097 charge = mdatoms->chargeA;
1098 krf = _mm_set1_ps(fr->ic->k_rf);
1099 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
1100 crf = _mm_set1_ps(fr->ic->c_rf);
1101 nvdwtype = fr->ntype;
1102 vdwparam = fr->nbfp;
1103 vdwtype = mdatoms->typeA;
1105 vftab = kernel_data->table_vdw->data;
1106 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
1108 /* Setup water-specific parameters */
1109 inr = nlist->iinr[0];
1110 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
1111 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
1112 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
1113 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1115 jq0 = _mm_set1_ps(charge[inr+0]);
1116 jq1 = _mm_set1_ps(charge[inr+1]);
1117 jq2 = _mm_set1_ps(charge[inr+2]);
1118 vdwjidx0A = 2*vdwtype[inr+0];
1119 qq00 = _mm_mul_ps(iq0,jq0);
1120 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
1121 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
1122 qq01 = _mm_mul_ps(iq0,jq1);
1123 qq02 = _mm_mul_ps(iq0,jq2);
1124 qq10 = _mm_mul_ps(iq1,jq0);
1125 qq11 = _mm_mul_ps(iq1,jq1);
1126 qq12 = _mm_mul_ps(iq1,jq2);
1127 qq20 = _mm_mul_ps(iq2,jq0);
1128 qq21 = _mm_mul_ps(iq2,jq1);
1129 qq22 = _mm_mul_ps(iq2,jq2);
1131 /* Avoid stupid compiler warnings */
1132 jnrA = jnrB = jnrC = jnrD = 0;
1133 j_coord_offsetA = 0;
1134 j_coord_offsetB = 0;
1135 j_coord_offsetC = 0;
1136 j_coord_offsetD = 0;
1141 /* Start outer loop over neighborlists */
1142 for(iidx=0; iidx<nri; iidx++)
1144 /* Load shift vector for this list */
1145 i_shift_offset = DIM*shiftidx[iidx];
1146 shX = shiftvec[i_shift_offset+XX];
1147 shY = shiftvec[i_shift_offset+YY];
1148 shZ = shiftvec[i_shift_offset+ZZ];
1150 /* Load limits for loop over neighbors */
1151 j_index_start = jindex[iidx];
1152 j_index_end = jindex[iidx+1];
1154 /* Get outer coordinate index */
1156 i_coord_offset = DIM*inr;
1158 /* Load i particle coords and add shift vector */
1159 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
1160 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
1161 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
1162 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
1163 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
1164 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
1165 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
1166 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
1167 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
1169 fix0 = _mm_setzero_ps();
1170 fiy0 = _mm_setzero_ps();
1171 fiz0 = _mm_setzero_ps();
1172 fix1 = _mm_setzero_ps();
1173 fiy1 = _mm_setzero_ps();
1174 fiz1 = _mm_setzero_ps();
1175 fix2 = _mm_setzero_ps();
1176 fiy2 = _mm_setzero_ps();
1177 fiz2 = _mm_setzero_ps();
1179 /* Start inner kernel loop */
1180 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1183 /* Get j neighbor index, and coordinate index */
1185 jnrB = jjnr[jidx+1];
1186 jnrC = jjnr[jidx+2];
1187 jnrD = jjnr[jidx+3];
1189 j_coord_offsetA = DIM*jnrA;
1190 j_coord_offsetB = DIM*jnrB;
1191 j_coord_offsetC = DIM*jnrC;
1192 j_coord_offsetD = DIM*jnrD;
1194 /* load j atom coordinates */
1195 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1196 x+j_coord_offsetC,x+j_coord_offsetD,
1197 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1199 /* Calculate displacement vector */
1200 dx00 = _mm_sub_ps(ix0,jx0);
1201 dy00 = _mm_sub_ps(iy0,jy0);
1202 dz00 = _mm_sub_ps(iz0,jz0);
1203 dx01 = _mm_sub_ps(ix0,jx1);
1204 dy01 = _mm_sub_ps(iy0,jy1);
1205 dz01 = _mm_sub_ps(iz0,jz1);
1206 dx02 = _mm_sub_ps(ix0,jx2);
1207 dy02 = _mm_sub_ps(iy0,jy2);
1208 dz02 = _mm_sub_ps(iz0,jz2);
1209 dx10 = _mm_sub_ps(ix1,jx0);
1210 dy10 = _mm_sub_ps(iy1,jy0);
1211 dz10 = _mm_sub_ps(iz1,jz0);
1212 dx11 = _mm_sub_ps(ix1,jx1);
1213 dy11 = _mm_sub_ps(iy1,jy1);
1214 dz11 = _mm_sub_ps(iz1,jz1);
1215 dx12 = _mm_sub_ps(ix1,jx2);
1216 dy12 = _mm_sub_ps(iy1,jy2);
1217 dz12 = _mm_sub_ps(iz1,jz2);
1218 dx20 = _mm_sub_ps(ix2,jx0);
1219 dy20 = _mm_sub_ps(iy2,jy0);
1220 dz20 = _mm_sub_ps(iz2,jz0);
1221 dx21 = _mm_sub_ps(ix2,jx1);
1222 dy21 = _mm_sub_ps(iy2,jy1);
1223 dz21 = _mm_sub_ps(iz2,jz1);
1224 dx22 = _mm_sub_ps(ix2,jx2);
1225 dy22 = _mm_sub_ps(iy2,jy2);
1226 dz22 = _mm_sub_ps(iz2,jz2);
1228 /* Calculate squared distance and things based on it */
1229 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1230 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1231 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1232 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1233 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1234 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1235 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1236 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1237 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1239 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1240 rinv01 = gmx_mm_invsqrt_ps(rsq01);
1241 rinv02 = gmx_mm_invsqrt_ps(rsq02);
1242 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1243 rinv11 = gmx_mm_invsqrt_ps(rsq11);
1244 rinv12 = gmx_mm_invsqrt_ps(rsq12);
1245 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1246 rinv21 = gmx_mm_invsqrt_ps(rsq21);
1247 rinv22 = gmx_mm_invsqrt_ps(rsq22);
1249 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1250 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1251 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1252 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1253 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1254 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1255 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1256 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1257 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1259 fjx0 = _mm_setzero_ps();
1260 fjy0 = _mm_setzero_ps();
1261 fjz0 = _mm_setzero_ps();
1262 fjx1 = _mm_setzero_ps();
1263 fjy1 = _mm_setzero_ps();
1264 fjz1 = _mm_setzero_ps();
1265 fjx2 = _mm_setzero_ps();
1266 fjy2 = _mm_setzero_ps();
1267 fjz2 = _mm_setzero_ps();
1269 /**************************
1270 * CALCULATE INTERACTIONS *
1271 **************************/
1273 r00 = _mm_mul_ps(rsq00,rinv00);
1275 /* Calculate table index by multiplying r with table scale and truncate to integer */
1276 rt = _mm_mul_ps(r00,vftabscale);
1277 vfitab = _mm_cvttps_epi32(rt);
1278 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1279 vfitab = _mm_slli_epi32(vfitab,3);
1281 /* REACTION-FIELD ELECTROSTATICS */
1282 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
1284 /* CUBIC SPLINE TABLE DISPERSION */
1285 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1286 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1287 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1288 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1289 _MM_TRANSPOSE4_PS(Y,F,G,H);
1290 Heps = _mm_mul_ps(vfeps,H);
1291 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1292 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1293 fvdw6 = _mm_mul_ps(c6_00,FF);
1295 /* CUBIC SPLINE TABLE REPULSION */
1296 vfitab = _mm_add_epi32(vfitab,ifour);
1297 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1298 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1299 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1300 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1301 _MM_TRANSPOSE4_PS(Y,F,G,H);
1302 Heps = _mm_mul_ps(vfeps,H);
1303 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1304 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1305 fvdw12 = _mm_mul_ps(c12_00,FF);
1306 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1308 fscal = _mm_add_ps(felec,fvdw);
1310 /* Calculate temporary vectorial force */
1311 tx = _mm_mul_ps(fscal,dx00);
1312 ty = _mm_mul_ps(fscal,dy00);
1313 tz = _mm_mul_ps(fscal,dz00);
1315 /* Update vectorial force */
1316 fix0 = _mm_add_ps(fix0,tx);
1317 fiy0 = _mm_add_ps(fiy0,ty);
1318 fiz0 = _mm_add_ps(fiz0,tz);
1320 fjx0 = _mm_add_ps(fjx0,tx);
1321 fjy0 = _mm_add_ps(fjy0,ty);
1322 fjz0 = _mm_add_ps(fjz0,tz);
1324 /**************************
1325 * CALCULATE INTERACTIONS *
1326 **************************/
1328 /* REACTION-FIELD ELECTROSTATICS */
1329 felec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_mul_ps(rinv01,rinvsq01),krf2));
1333 /* Calculate temporary vectorial force */
1334 tx = _mm_mul_ps(fscal,dx01);
1335 ty = _mm_mul_ps(fscal,dy01);
1336 tz = _mm_mul_ps(fscal,dz01);
1338 /* Update vectorial force */
1339 fix0 = _mm_add_ps(fix0,tx);
1340 fiy0 = _mm_add_ps(fiy0,ty);
1341 fiz0 = _mm_add_ps(fiz0,tz);
1343 fjx1 = _mm_add_ps(fjx1,tx);
1344 fjy1 = _mm_add_ps(fjy1,ty);
1345 fjz1 = _mm_add_ps(fjz1,tz);
1347 /**************************
1348 * CALCULATE INTERACTIONS *
1349 **************************/
1351 /* REACTION-FIELD ELECTROSTATICS */
1352 felec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_mul_ps(rinv02,rinvsq02),krf2));
1356 /* Calculate temporary vectorial force */
1357 tx = _mm_mul_ps(fscal,dx02);
1358 ty = _mm_mul_ps(fscal,dy02);
1359 tz = _mm_mul_ps(fscal,dz02);
1361 /* Update vectorial force */
1362 fix0 = _mm_add_ps(fix0,tx);
1363 fiy0 = _mm_add_ps(fiy0,ty);
1364 fiz0 = _mm_add_ps(fiz0,tz);
1366 fjx2 = _mm_add_ps(fjx2,tx);
1367 fjy2 = _mm_add_ps(fjy2,ty);
1368 fjz2 = _mm_add_ps(fjz2,tz);
1370 /**************************
1371 * CALCULATE INTERACTIONS *
1372 **************************/
1374 /* REACTION-FIELD ELECTROSTATICS */
1375 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
1379 /* Calculate temporary vectorial force */
1380 tx = _mm_mul_ps(fscal,dx10);
1381 ty = _mm_mul_ps(fscal,dy10);
1382 tz = _mm_mul_ps(fscal,dz10);
1384 /* Update vectorial force */
1385 fix1 = _mm_add_ps(fix1,tx);
1386 fiy1 = _mm_add_ps(fiy1,ty);
1387 fiz1 = _mm_add_ps(fiz1,tz);
1389 fjx0 = _mm_add_ps(fjx0,tx);
1390 fjy0 = _mm_add_ps(fjy0,ty);
1391 fjz0 = _mm_add_ps(fjz0,tz);
1393 /**************************
1394 * CALCULATE INTERACTIONS *
1395 **************************/
1397 /* REACTION-FIELD ELECTROSTATICS */
1398 felec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_mul_ps(rinv11,rinvsq11),krf2));
1402 /* Calculate temporary vectorial force */
1403 tx = _mm_mul_ps(fscal,dx11);
1404 ty = _mm_mul_ps(fscal,dy11);
1405 tz = _mm_mul_ps(fscal,dz11);
1407 /* Update vectorial force */
1408 fix1 = _mm_add_ps(fix1,tx);
1409 fiy1 = _mm_add_ps(fiy1,ty);
1410 fiz1 = _mm_add_ps(fiz1,tz);
1412 fjx1 = _mm_add_ps(fjx1,tx);
1413 fjy1 = _mm_add_ps(fjy1,ty);
1414 fjz1 = _mm_add_ps(fjz1,tz);
1416 /**************************
1417 * CALCULATE INTERACTIONS *
1418 **************************/
1420 /* REACTION-FIELD ELECTROSTATICS */
1421 felec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_mul_ps(rinv12,rinvsq12),krf2));
1425 /* Calculate temporary vectorial force */
1426 tx = _mm_mul_ps(fscal,dx12);
1427 ty = _mm_mul_ps(fscal,dy12);
1428 tz = _mm_mul_ps(fscal,dz12);
1430 /* Update vectorial force */
1431 fix1 = _mm_add_ps(fix1,tx);
1432 fiy1 = _mm_add_ps(fiy1,ty);
1433 fiz1 = _mm_add_ps(fiz1,tz);
1435 fjx2 = _mm_add_ps(fjx2,tx);
1436 fjy2 = _mm_add_ps(fjy2,ty);
1437 fjz2 = _mm_add_ps(fjz2,tz);
1439 /**************************
1440 * CALCULATE INTERACTIONS *
1441 **************************/
1443 /* REACTION-FIELD ELECTROSTATICS */
1444 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
1448 /* Calculate temporary vectorial force */
1449 tx = _mm_mul_ps(fscal,dx20);
1450 ty = _mm_mul_ps(fscal,dy20);
1451 tz = _mm_mul_ps(fscal,dz20);
1453 /* Update vectorial force */
1454 fix2 = _mm_add_ps(fix2,tx);
1455 fiy2 = _mm_add_ps(fiy2,ty);
1456 fiz2 = _mm_add_ps(fiz2,tz);
1458 fjx0 = _mm_add_ps(fjx0,tx);
1459 fjy0 = _mm_add_ps(fjy0,ty);
1460 fjz0 = _mm_add_ps(fjz0,tz);
1462 /**************************
1463 * CALCULATE INTERACTIONS *
1464 **************************/
1466 /* REACTION-FIELD ELECTROSTATICS */
1467 felec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_mul_ps(rinv21,rinvsq21),krf2));
1471 /* Calculate temporary vectorial force */
1472 tx = _mm_mul_ps(fscal,dx21);
1473 ty = _mm_mul_ps(fscal,dy21);
1474 tz = _mm_mul_ps(fscal,dz21);
1476 /* Update vectorial force */
1477 fix2 = _mm_add_ps(fix2,tx);
1478 fiy2 = _mm_add_ps(fiy2,ty);
1479 fiz2 = _mm_add_ps(fiz2,tz);
1481 fjx1 = _mm_add_ps(fjx1,tx);
1482 fjy1 = _mm_add_ps(fjy1,ty);
1483 fjz1 = _mm_add_ps(fjz1,tz);
1485 /**************************
1486 * CALCULATE INTERACTIONS *
1487 **************************/
1489 /* REACTION-FIELD ELECTROSTATICS */
1490 felec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_mul_ps(rinv22,rinvsq22),krf2));
1494 /* Calculate temporary vectorial force */
1495 tx = _mm_mul_ps(fscal,dx22);
1496 ty = _mm_mul_ps(fscal,dy22);
1497 tz = _mm_mul_ps(fscal,dz22);
1499 /* Update vectorial force */
1500 fix2 = _mm_add_ps(fix2,tx);
1501 fiy2 = _mm_add_ps(fiy2,ty);
1502 fiz2 = _mm_add_ps(fiz2,tz);
1504 fjx2 = _mm_add_ps(fjx2,tx);
1505 fjy2 = _mm_add_ps(fjy2,ty);
1506 fjz2 = _mm_add_ps(fjz2,tz);
1508 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1509 f+j_coord_offsetC,f+j_coord_offsetD,
1510 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1512 /* Inner loop uses 270 flops */
1515 if(jidx<j_index_end)
1518 /* Get j neighbor index, and coordinate index */
1520 jnrB = jjnr[jidx+1];
1521 jnrC = jjnr[jidx+2];
1522 jnrD = jjnr[jidx+3];
1524 /* Sign of each element will be negative for non-real atoms.
1525 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1526 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1528 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1529 jnrA = (jnrA>=0) ? jnrA : 0;
1530 jnrB = (jnrB>=0) ? jnrB : 0;
1531 jnrC = (jnrC>=0) ? jnrC : 0;
1532 jnrD = (jnrD>=0) ? jnrD : 0;
1534 j_coord_offsetA = DIM*jnrA;
1535 j_coord_offsetB = DIM*jnrB;
1536 j_coord_offsetC = DIM*jnrC;
1537 j_coord_offsetD = DIM*jnrD;
1539 /* load j atom coordinates */
1540 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1541 x+j_coord_offsetC,x+j_coord_offsetD,
1542 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1544 /* Calculate displacement vector */
1545 dx00 = _mm_sub_ps(ix0,jx0);
1546 dy00 = _mm_sub_ps(iy0,jy0);
1547 dz00 = _mm_sub_ps(iz0,jz0);
1548 dx01 = _mm_sub_ps(ix0,jx1);
1549 dy01 = _mm_sub_ps(iy0,jy1);
1550 dz01 = _mm_sub_ps(iz0,jz1);
1551 dx02 = _mm_sub_ps(ix0,jx2);
1552 dy02 = _mm_sub_ps(iy0,jy2);
1553 dz02 = _mm_sub_ps(iz0,jz2);
1554 dx10 = _mm_sub_ps(ix1,jx0);
1555 dy10 = _mm_sub_ps(iy1,jy0);
1556 dz10 = _mm_sub_ps(iz1,jz0);
1557 dx11 = _mm_sub_ps(ix1,jx1);
1558 dy11 = _mm_sub_ps(iy1,jy1);
1559 dz11 = _mm_sub_ps(iz1,jz1);
1560 dx12 = _mm_sub_ps(ix1,jx2);
1561 dy12 = _mm_sub_ps(iy1,jy2);
1562 dz12 = _mm_sub_ps(iz1,jz2);
1563 dx20 = _mm_sub_ps(ix2,jx0);
1564 dy20 = _mm_sub_ps(iy2,jy0);
1565 dz20 = _mm_sub_ps(iz2,jz0);
1566 dx21 = _mm_sub_ps(ix2,jx1);
1567 dy21 = _mm_sub_ps(iy2,jy1);
1568 dz21 = _mm_sub_ps(iz2,jz1);
1569 dx22 = _mm_sub_ps(ix2,jx2);
1570 dy22 = _mm_sub_ps(iy2,jy2);
1571 dz22 = _mm_sub_ps(iz2,jz2);
1573 /* Calculate squared distance and things based on it */
1574 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1575 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1576 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1577 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1578 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1579 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1580 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1581 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1582 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1584 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1585 rinv01 = gmx_mm_invsqrt_ps(rsq01);
1586 rinv02 = gmx_mm_invsqrt_ps(rsq02);
1587 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1588 rinv11 = gmx_mm_invsqrt_ps(rsq11);
1589 rinv12 = gmx_mm_invsqrt_ps(rsq12);
1590 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1591 rinv21 = gmx_mm_invsqrt_ps(rsq21);
1592 rinv22 = gmx_mm_invsqrt_ps(rsq22);
1594 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1595 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1596 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1597 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1598 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1599 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1600 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1601 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1602 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1604 fjx0 = _mm_setzero_ps();
1605 fjy0 = _mm_setzero_ps();
1606 fjz0 = _mm_setzero_ps();
1607 fjx1 = _mm_setzero_ps();
1608 fjy1 = _mm_setzero_ps();
1609 fjz1 = _mm_setzero_ps();
1610 fjx2 = _mm_setzero_ps();
1611 fjy2 = _mm_setzero_ps();
1612 fjz2 = _mm_setzero_ps();
1614 /**************************
1615 * CALCULATE INTERACTIONS *
1616 **************************/
1618 r00 = _mm_mul_ps(rsq00,rinv00);
1619 r00 = _mm_andnot_ps(dummy_mask,r00);
1621 /* Calculate table index by multiplying r with table scale and truncate to integer */
1622 rt = _mm_mul_ps(r00,vftabscale);
1623 vfitab = _mm_cvttps_epi32(rt);
1624 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1625 vfitab = _mm_slli_epi32(vfitab,3);
1627 /* REACTION-FIELD ELECTROSTATICS */
1628 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
1630 /* CUBIC SPLINE TABLE DISPERSION */
1631 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1632 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1633 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1634 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1635 _MM_TRANSPOSE4_PS(Y,F,G,H);
1636 Heps = _mm_mul_ps(vfeps,H);
1637 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1638 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1639 fvdw6 = _mm_mul_ps(c6_00,FF);
1641 /* CUBIC SPLINE TABLE REPULSION */
1642 vfitab = _mm_add_epi32(vfitab,ifour);
1643 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1644 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1645 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1646 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1647 _MM_TRANSPOSE4_PS(Y,F,G,H);
1648 Heps = _mm_mul_ps(vfeps,H);
1649 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1650 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1651 fvdw12 = _mm_mul_ps(c12_00,FF);
1652 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1654 fscal = _mm_add_ps(felec,fvdw);
1656 fscal = _mm_andnot_ps(dummy_mask,fscal);
1658 /* Calculate temporary vectorial force */
1659 tx = _mm_mul_ps(fscal,dx00);
1660 ty = _mm_mul_ps(fscal,dy00);
1661 tz = _mm_mul_ps(fscal,dz00);
1663 /* Update vectorial force */
1664 fix0 = _mm_add_ps(fix0,tx);
1665 fiy0 = _mm_add_ps(fiy0,ty);
1666 fiz0 = _mm_add_ps(fiz0,tz);
1668 fjx0 = _mm_add_ps(fjx0,tx);
1669 fjy0 = _mm_add_ps(fjy0,ty);
1670 fjz0 = _mm_add_ps(fjz0,tz);
1672 /**************************
1673 * CALCULATE INTERACTIONS *
1674 **************************/
1676 /* REACTION-FIELD ELECTROSTATICS */
1677 felec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_mul_ps(rinv01,rinvsq01),krf2));
1681 fscal = _mm_andnot_ps(dummy_mask,fscal);
1683 /* Calculate temporary vectorial force */
1684 tx = _mm_mul_ps(fscal,dx01);
1685 ty = _mm_mul_ps(fscal,dy01);
1686 tz = _mm_mul_ps(fscal,dz01);
1688 /* Update vectorial force */
1689 fix0 = _mm_add_ps(fix0,tx);
1690 fiy0 = _mm_add_ps(fiy0,ty);
1691 fiz0 = _mm_add_ps(fiz0,tz);
1693 fjx1 = _mm_add_ps(fjx1,tx);
1694 fjy1 = _mm_add_ps(fjy1,ty);
1695 fjz1 = _mm_add_ps(fjz1,tz);
1697 /**************************
1698 * CALCULATE INTERACTIONS *
1699 **************************/
1701 /* REACTION-FIELD ELECTROSTATICS */
1702 felec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_mul_ps(rinv02,rinvsq02),krf2));
1706 fscal = _mm_andnot_ps(dummy_mask,fscal);
1708 /* Calculate temporary vectorial force */
1709 tx = _mm_mul_ps(fscal,dx02);
1710 ty = _mm_mul_ps(fscal,dy02);
1711 tz = _mm_mul_ps(fscal,dz02);
1713 /* Update vectorial force */
1714 fix0 = _mm_add_ps(fix0,tx);
1715 fiy0 = _mm_add_ps(fiy0,ty);
1716 fiz0 = _mm_add_ps(fiz0,tz);
1718 fjx2 = _mm_add_ps(fjx2,tx);
1719 fjy2 = _mm_add_ps(fjy2,ty);
1720 fjz2 = _mm_add_ps(fjz2,tz);
1722 /**************************
1723 * CALCULATE INTERACTIONS *
1724 **************************/
1726 /* REACTION-FIELD ELECTROSTATICS */
1727 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
1731 fscal = _mm_andnot_ps(dummy_mask,fscal);
1733 /* Calculate temporary vectorial force */
1734 tx = _mm_mul_ps(fscal,dx10);
1735 ty = _mm_mul_ps(fscal,dy10);
1736 tz = _mm_mul_ps(fscal,dz10);
1738 /* Update vectorial force */
1739 fix1 = _mm_add_ps(fix1,tx);
1740 fiy1 = _mm_add_ps(fiy1,ty);
1741 fiz1 = _mm_add_ps(fiz1,tz);
1743 fjx0 = _mm_add_ps(fjx0,tx);
1744 fjy0 = _mm_add_ps(fjy0,ty);
1745 fjz0 = _mm_add_ps(fjz0,tz);
1747 /**************************
1748 * CALCULATE INTERACTIONS *
1749 **************************/
1751 /* REACTION-FIELD ELECTROSTATICS */
1752 felec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_mul_ps(rinv11,rinvsq11),krf2));
1756 fscal = _mm_andnot_ps(dummy_mask,fscal);
1758 /* Calculate temporary vectorial force */
1759 tx = _mm_mul_ps(fscal,dx11);
1760 ty = _mm_mul_ps(fscal,dy11);
1761 tz = _mm_mul_ps(fscal,dz11);
1763 /* Update vectorial force */
1764 fix1 = _mm_add_ps(fix1,tx);
1765 fiy1 = _mm_add_ps(fiy1,ty);
1766 fiz1 = _mm_add_ps(fiz1,tz);
1768 fjx1 = _mm_add_ps(fjx1,tx);
1769 fjy1 = _mm_add_ps(fjy1,ty);
1770 fjz1 = _mm_add_ps(fjz1,tz);
1772 /**************************
1773 * CALCULATE INTERACTIONS *
1774 **************************/
1776 /* REACTION-FIELD ELECTROSTATICS */
1777 felec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_mul_ps(rinv12,rinvsq12),krf2));
1781 fscal = _mm_andnot_ps(dummy_mask,fscal);
1783 /* Calculate temporary vectorial force */
1784 tx = _mm_mul_ps(fscal,dx12);
1785 ty = _mm_mul_ps(fscal,dy12);
1786 tz = _mm_mul_ps(fscal,dz12);
1788 /* Update vectorial force */
1789 fix1 = _mm_add_ps(fix1,tx);
1790 fiy1 = _mm_add_ps(fiy1,ty);
1791 fiz1 = _mm_add_ps(fiz1,tz);
1793 fjx2 = _mm_add_ps(fjx2,tx);
1794 fjy2 = _mm_add_ps(fjy2,ty);
1795 fjz2 = _mm_add_ps(fjz2,tz);
1797 /**************************
1798 * CALCULATE INTERACTIONS *
1799 **************************/
1801 /* REACTION-FIELD ELECTROSTATICS */
1802 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
1806 fscal = _mm_andnot_ps(dummy_mask,fscal);
1808 /* Calculate temporary vectorial force */
1809 tx = _mm_mul_ps(fscal,dx20);
1810 ty = _mm_mul_ps(fscal,dy20);
1811 tz = _mm_mul_ps(fscal,dz20);
1813 /* Update vectorial force */
1814 fix2 = _mm_add_ps(fix2,tx);
1815 fiy2 = _mm_add_ps(fiy2,ty);
1816 fiz2 = _mm_add_ps(fiz2,tz);
1818 fjx0 = _mm_add_ps(fjx0,tx);
1819 fjy0 = _mm_add_ps(fjy0,ty);
1820 fjz0 = _mm_add_ps(fjz0,tz);
1822 /**************************
1823 * CALCULATE INTERACTIONS *
1824 **************************/
1826 /* REACTION-FIELD ELECTROSTATICS */
1827 felec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_mul_ps(rinv21,rinvsq21),krf2));
1831 fscal = _mm_andnot_ps(dummy_mask,fscal);
1833 /* Calculate temporary vectorial force */
1834 tx = _mm_mul_ps(fscal,dx21);
1835 ty = _mm_mul_ps(fscal,dy21);
1836 tz = _mm_mul_ps(fscal,dz21);
1838 /* Update vectorial force */
1839 fix2 = _mm_add_ps(fix2,tx);
1840 fiy2 = _mm_add_ps(fiy2,ty);
1841 fiz2 = _mm_add_ps(fiz2,tz);
1843 fjx1 = _mm_add_ps(fjx1,tx);
1844 fjy1 = _mm_add_ps(fjy1,ty);
1845 fjz1 = _mm_add_ps(fjz1,tz);
1847 /**************************
1848 * CALCULATE INTERACTIONS *
1849 **************************/
1851 /* REACTION-FIELD ELECTROSTATICS */
1852 felec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_mul_ps(rinv22,rinvsq22),krf2));
1856 fscal = _mm_andnot_ps(dummy_mask,fscal);
1858 /* Calculate temporary vectorial force */
1859 tx = _mm_mul_ps(fscal,dx22);
1860 ty = _mm_mul_ps(fscal,dy22);
1861 tz = _mm_mul_ps(fscal,dz22);
1863 /* Update vectorial force */
1864 fix2 = _mm_add_ps(fix2,tx);
1865 fiy2 = _mm_add_ps(fiy2,ty);
1866 fiz2 = _mm_add_ps(fiz2,tz);
1868 fjx2 = _mm_add_ps(fjx2,tx);
1869 fjy2 = _mm_add_ps(fjy2,ty);
1870 fjz2 = _mm_add_ps(fjz2,tz);
1872 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1873 f+j_coord_offsetC,f+j_coord_offsetD,
1874 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1876 /* Inner loop uses 271 flops */
1879 /* End of innermost loop */
1881 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1882 f+i_coord_offset,fshift+i_shift_offset);
1884 /* Increment number of inner iterations */
1885 inneriter += j_index_end - j_index_start;
1887 /* Outer loop uses 27 flops */
1890 /* Increment number of outer iterations */
1893 /* Update outer/inner flops */
1895 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*27 + inneriter*271);