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36 * Note: this file was generated by the GROMACS sse2_single kernel generator.
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
47 #include "gromacs/simd/math_x86_sse2_single.h"
48 #include "kernelutil_x86_sse2_single.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwNone_GeomP1P1_VF_sse2_single
52 * Electrostatics interaction: GeneralizedBorn
53 * VdW interaction: None
54 * Geometry: Particle-Particle
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecGB_VdwNone_GeomP1P1_VF_sse2_single
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int jnrA,jnrB,jnrC,jnrD;
75 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
82 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
84 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
86 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
87 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
88 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
91 __m128 vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,gbeps,dvdatmp;
92 __m128 minushalf = _mm_set1_ps(-0.5);
93 real *invsqrta,*dvda,*gbtab;
95 __m128i ifour = _mm_set1_epi32(4);
96 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
98 __m128 dummy_mask,cutoff_mask;
99 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
100 __m128 one = _mm_set1_ps(1.0);
101 __m128 two = _mm_set1_ps(2.0);
107 jindex = nlist->jindex;
109 shiftidx = nlist->shift;
111 shiftvec = fr->shift_vec[0];
112 fshift = fr->fshift[0];
113 facel = _mm_set1_ps(fr->epsfac);
114 charge = mdatoms->chargeA;
116 invsqrta = fr->invsqrta;
118 gbtabscale = _mm_set1_ps(fr->gbtab.scale);
119 gbtab = fr->gbtab.data;
120 gbinvepsdiff = _mm_set1_ps((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
122 /* Avoid stupid compiler warnings */
123 jnrA = jnrB = jnrC = jnrD = 0;
132 for(iidx=0;iidx<4*DIM;iidx++)
137 /* Start outer loop over neighborlists */
138 for(iidx=0; iidx<nri; iidx++)
140 /* Load shift vector for this list */
141 i_shift_offset = DIM*shiftidx[iidx];
143 /* Load limits for loop over neighbors */
144 j_index_start = jindex[iidx];
145 j_index_end = jindex[iidx+1];
147 /* Get outer coordinate index */
149 i_coord_offset = DIM*inr;
151 /* Load i particle coords and add shift vector */
152 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
154 fix0 = _mm_setzero_ps();
155 fiy0 = _mm_setzero_ps();
156 fiz0 = _mm_setzero_ps();
158 /* Load parameters for i particles */
159 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
160 isai0 = _mm_load1_ps(invsqrta+inr+0);
162 /* Reset potential sums */
163 velecsum = _mm_setzero_ps();
164 vgbsum = _mm_setzero_ps();
165 dvdasum = _mm_setzero_ps();
167 /* Start inner kernel loop */
168 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
171 /* Get j neighbor index, and coordinate index */
176 j_coord_offsetA = DIM*jnrA;
177 j_coord_offsetB = DIM*jnrB;
178 j_coord_offsetC = DIM*jnrC;
179 j_coord_offsetD = DIM*jnrD;
181 /* load j atom coordinates */
182 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
183 x+j_coord_offsetC,x+j_coord_offsetD,
186 /* Calculate displacement vector */
187 dx00 = _mm_sub_ps(ix0,jx0);
188 dy00 = _mm_sub_ps(iy0,jy0);
189 dz00 = _mm_sub_ps(iz0,jz0);
191 /* Calculate squared distance and things based on it */
192 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
194 rinv00 = gmx_mm_invsqrt_ps(rsq00);
196 /* Load parameters for j particles */
197 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
198 charge+jnrC+0,charge+jnrD+0);
199 isaj0 = gmx_mm_load_4real_swizzle_ps(invsqrta+jnrA+0,invsqrta+jnrB+0,
200 invsqrta+jnrC+0,invsqrta+jnrD+0);
202 /**************************
203 * CALCULATE INTERACTIONS *
204 **************************/
206 r00 = _mm_mul_ps(rsq00,rinv00);
208 /* Compute parameters for interactions between i and j atoms */
209 qq00 = _mm_mul_ps(iq0,jq0);
211 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
212 isaprod = _mm_mul_ps(isai0,isaj0);
213 gbqqfactor = _mm_xor_ps(signbit,_mm_mul_ps(qq00,_mm_mul_ps(isaprod,gbinvepsdiff)));
214 gbscale = _mm_mul_ps(isaprod,gbtabscale);
216 /* Calculate generalized born table index - this is a separate table from the normal one,
217 * but we use the same procedure by multiplying r with scale and truncating to integer.
219 rt = _mm_mul_ps(r00,gbscale);
220 gbitab = _mm_cvttps_epi32(rt);
221 gbeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(gbitab));
222 gbitab = _mm_slli_epi32(gbitab,2);
224 Y = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,0) );
225 F = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,1) );
226 G = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,2) );
227 H = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,3) );
228 _MM_TRANSPOSE4_PS(Y,F,G,H);
229 Heps = _mm_mul_ps(gbeps,H);
230 Fp = _mm_add_ps(F,_mm_mul_ps(gbeps,_mm_add_ps(G,Heps)));
231 VV = _mm_add_ps(Y,_mm_mul_ps(gbeps,Fp));
232 vgb = _mm_mul_ps(gbqqfactor,VV);
234 FF = _mm_add_ps(Fp,_mm_mul_ps(gbeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
235 fgb = _mm_mul_ps(gbqqfactor,_mm_mul_ps(FF,gbscale));
236 dvdatmp = _mm_mul_ps(minushalf,_mm_add_ps(vgb,_mm_mul_ps(fgb,r00)));
237 dvdasum = _mm_add_ps(dvdasum,dvdatmp);
242 gmx_mm_increment_4real_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,_mm_mul_ps(dvdatmp,_mm_mul_ps(isaj0,isaj0)));
243 velec = _mm_mul_ps(qq00,rinv00);
244 felec = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(velec,rinv00),fgb),rinv00);
246 /* Update potential sum for this i atom from the interaction with this j atom. */
247 velecsum = _mm_add_ps(velecsum,velec);
248 vgbsum = _mm_add_ps(vgbsum,vgb);
252 /* Calculate temporary vectorial force */
253 tx = _mm_mul_ps(fscal,dx00);
254 ty = _mm_mul_ps(fscal,dy00);
255 tz = _mm_mul_ps(fscal,dz00);
257 /* Update vectorial force */
258 fix0 = _mm_add_ps(fix0,tx);
259 fiy0 = _mm_add_ps(fiy0,ty);
260 fiz0 = _mm_add_ps(fiz0,tz);
262 fjptrA = f+j_coord_offsetA;
263 fjptrB = f+j_coord_offsetB;
264 fjptrC = f+j_coord_offsetC;
265 fjptrD = f+j_coord_offsetD;
266 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
268 /* Inner loop uses 58 flops */
274 /* Get j neighbor index, and coordinate index */
275 jnrlistA = jjnr[jidx];
276 jnrlistB = jjnr[jidx+1];
277 jnrlistC = jjnr[jidx+2];
278 jnrlistD = jjnr[jidx+3];
279 /* Sign of each element will be negative for non-real atoms.
280 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
281 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
283 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
284 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
285 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
286 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
287 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
288 j_coord_offsetA = DIM*jnrA;
289 j_coord_offsetB = DIM*jnrB;
290 j_coord_offsetC = DIM*jnrC;
291 j_coord_offsetD = DIM*jnrD;
293 /* load j atom coordinates */
294 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
295 x+j_coord_offsetC,x+j_coord_offsetD,
298 /* Calculate displacement vector */
299 dx00 = _mm_sub_ps(ix0,jx0);
300 dy00 = _mm_sub_ps(iy0,jy0);
301 dz00 = _mm_sub_ps(iz0,jz0);
303 /* Calculate squared distance and things based on it */
304 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
306 rinv00 = gmx_mm_invsqrt_ps(rsq00);
308 /* Load parameters for j particles */
309 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
310 charge+jnrC+0,charge+jnrD+0);
311 isaj0 = gmx_mm_load_4real_swizzle_ps(invsqrta+jnrA+0,invsqrta+jnrB+0,
312 invsqrta+jnrC+0,invsqrta+jnrD+0);
314 /**************************
315 * CALCULATE INTERACTIONS *
316 **************************/
318 r00 = _mm_mul_ps(rsq00,rinv00);
319 r00 = _mm_andnot_ps(dummy_mask,r00);
321 /* Compute parameters for interactions between i and j atoms */
322 qq00 = _mm_mul_ps(iq0,jq0);
324 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
325 isaprod = _mm_mul_ps(isai0,isaj0);
326 gbqqfactor = _mm_xor_ps(signbit,_mm_mul_ps(qq00,_mm_mul_ps(isaprod,gbinvepsdiff)));
327 gbscale = _mm_mul_ps(isaprod,gbtabscale);
329 /* Calculate generalized born table index - this is a separate table from the normal one,
330 * but we use the same procedure by multiplying r with scale and truncating to integer.
332 rt = _mm_mul_ps(r00,gbscale);
333 gbitab = _mm_cvttps_epi32(rt);
334 gbeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(gbitab));
335 gbitab = _mm_slli_epi32(gbitab,2);
337 Y = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,0) );
338 F = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,1) );
339 G = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,2) );
340 H = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,3) );
341 _MM_TRANSPOSE4_PS(Y,F,G,H);
342 Heps = _mm_mul_ps(gbeps,H);
343 Fp = _mm_add_ps(F,_mm_mul_ps(gbeps,_mm_add_ps(G,Heps)));
344 VV = _mm_add_ps(Y,_mm_mul_ps(gbeps,Fp));
345 vgb = _mm_mul_ps(gbqqfactor,VV);
347 FF = _mm_add_ps(Fp,_mm_mul_ps(gbeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
348 fgb = _mm_mul_ps(gbqqfactor,_mm_mul_ps(FF,gbscale));
349 dvdatmp = _mm_mul_ps(minushalf,_mm_add_ps(vgb,_mm_mul_ps(fgb,r00)));
350 dvdatmp = _mm_andnot_ps(dummy_mask,dvdatmp);
351 dvdasum = _mm_add_ps(dvdasum,dvdatmp);
352 /* The pointers to scratch make sure that this code with compilers that take gmx_restrict seriously (e.g. icc 13) really can't screw things up. */
353 fjptrA = (jnrlistA>=0) ? dvda+jnrA : scratch;
354 fjptrB = (jnrlistB>=0) ? dvda+jnrB : scratch;
355 fjptrC = (jnrlistC>=0) ? dvda+jnrC : scratch;
356 fjptrD = (jnrlistD>=0) ? dvda+jnrD : scratch;
357 gmx_mm_increment_4real_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,_mm_mul_ps(dvdatmp,_mm_mul_ps(isaj0,isaj0)));
358 velec = _mm_mul_ps(qq00,rinv00);
359 felec = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(velec,rinv00),fgb),rinv00);
361 /* Update potential sum for this i atom from the interaction with this j atom. */
362 velec = _mm_andnot_ps(dummy_mask,velec);
363 velecsum = _mm_add_ps(velecsum,velec);
364 vgb = _mm_andnot_ps(dummy_mask,vgb);
365 vgbsum = _mm_add_ps(vgbsum,vgb);
369 fscal = _mm_andnot_ps(dummy_mask,fscal);
371 /* Calculate temporary vectorial force */
372 tx = _mm_mul_ps(fscal,dx00);
373 ty = _mm_mul_ps(fscal,dy00);
374 tz = _mm_mul_ps(fscal,dz00);
376 /* Update vectorial force */
377 fix0 = _mm_add_ps(fix0,tx);
378 fiy0 = _mm_add_ps(fiy0,ty);
379 fiz0 = _mm_add_ps(fiz0,tz);
381 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
382 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
383 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
384 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
385 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
387 /* Inner loop uses 59 flops */
390 /* End of innermost loop */
392 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
393 f+i_coord_offset,fshift+i_shift_offset);
396 /* Update potential energies */
397 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
398 gmx_mm_update_1pot_ps(vgbsum,kernel_data->energygrp_polarization+ggid);
399 dvdasum = _mm_mul_ps(dvdasum, _mm_mul_ps(isai0,isai0));
400 gmx_mm_update_1pot_ps(dvdasum,dvda+inr);
402 /* Increment number of inner iterations */
403 inneriter += j_index_end - j_index_start;
405 /* Outer loop uses 9 flops */
408 /* Increment number of outer iterations */
411 /* Update outer/inner flops */
413 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*9 + inneriter*59);
416 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwNone_GeomP1P1_F_sse2_single
417 * Electrostatics interaction: GeneralizedBorn
418 * VdW interaction: None
419 * Geometry: Particle-Particle
420 * Calculate force/pot: Force
423 nb_kernel_ElecGB_VdwNone_GeomP1P1_F_sse2_single
424 (t_nblist * gmx_restrict nlist,
425 rvec * gmx_restrict xx,
426 rvec * gmx_restrict ff,
427 t_forcerec * gmx_restrict fr,
428 t_mdatoms * gmx_restrict mdatoms,
429 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
430 t_nrnb * gmx_restrict nrnb)
432 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
433 * just 0 for non-waters.
434 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
435 * jnr indices corresponding to data put in the four positions in the SIMD register.
437 int i_shift_offset,i_coord_offset,outeriter,inneriter;
438 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
439 int jnrA,jnrB,jnrC,jnrD;
440 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
441 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
442 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
444 real *shiftvec,*fshift,*x,*f;
445 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
447 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
449 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
450 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
451 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
452 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
453 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
456 __m128 vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,gbeps,dvdatmp;
457 __m128 minushalf = _mm_set1_ps(-0.5);
458 real *invsqrta,*dvda,*gbtab;
460 __m128i ifour = _mm_set1_epi32(4);
461 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
463 __m128 dummy_mask,cutoff_mask;
464 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
465 __m128 one = _mm_set1_ps(1.0);
466 __m128 two = _mm_set1_ps(2.0);
472 jindex = nlist->jindex;
474 shiftidx = nlist->shift;
476 shiftvec = fr->shift_vec[0];
477 fshift = fr->fshift[0];
478 facel = _mm_set1_ps(fr->epsfac);
479 charge = mdatoms->chargeA;
481 invsqrta = fr->invsqrta;
483 gbtabscale = _mm_set1_ps(fr->gbtab.scale);
484 gbtab = fr->gbtab.data;
485 gbinvepsdiff = _mm_set1_ps((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
487 /* Avoid stupid compiler warnings */
488 jnrA = jnrB = jnrC = jnrD = 0;
497 for(iidx=0;iidx<4*DIM;iidx++)
502 /* Start outer loop over neighborlists */
503 for(iidx=0; iidx<nri; iidx++)
505 /* Load shift vector for this list */
506 i_shift_offset = DIM*shiftidx[iidx];
508 /* Load limits for loop over neighbors */
509 j_index_start = jindex[iidx];
510 j_index_end = jindex[iidx+1];
512 /* Get outer coordinate index */
514 i_coord_offset = DIM*inr;
516 /* Load i particle coords and add shift vector */
517 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
519 fix0 = _mm_setzero_ps();
520 fiy0 = _mm_setzero_ps();
521 fiz0 = _mm_setzero_ps();
523 /* Load parameters for i particles */
524 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
525 isai0 = _mm_load1_ps(invsqrta+inr+0);
527 dvdasum = _mm_setzero_ps();
529 /* Start inner kernel loop */
530 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
533 /* Get j neighbor index, and coordinate index */
538 j_coord_offsetA = DIM*jnrA;
539 j_coord_offsetB = DIM*jnrB;
540 j_coord_offsetC = DIM*jnrC;
541 j_coord_offsetD = DIM*jnrD;
543 /* load j atom coordinates */
544 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
545 x+j_coord_offsetC,x+j_coord_offsetD,
548 /* Calculate displacement vector */
549 dx00 = _mm_sub_ps(ix0,jx0);
550 dy00 = _mm_sub_ps(iy0,jy0);
551 dz00 = _mm_sub_ps(iz0,jz0);
553 /* Calculate squared distance and things based on it */
554 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
556 rinv00 = gmx_mm_invsqrt_ps(rsq00);
558 /* Load parameters for j particles */
559 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
560 charge+jnrC+0,charge+jnrD+0);
561 isaj0 = gmx_mm_load_4real_swizzle_ps(invsqrta+jnrA+0,invsqrta+jnrB+0,
562 invsqrta+jnrC+0,invsqrta+jnrD+0);
564 /**************************
565 * CALCULATE INTERACTIONS *
566 **************************/
568 r00 = _mm_mul_ps(rsq00,rinv00);
570 /* Compute parameters for interactions between i and j atoms */
571 qq00 = _mm_mul_ps(iq0,jq0);
573 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
574 isaprod = _mm_mul_ps(isai0,isaj0);
575 gbqqfactor = _mm_xor_ps(signbit,_mm_mul_ps(qq00,_mm_mul_ps(isaprod,gbinvepsdiff)));
576 gbscale = _mm_mul_ps(isaprod,gbtabscale);
578 /* Calculate generalized born table index - this is a separate table from the normal one,
579 * but we use the same procedure by multiplying r with scale and truncating to integer.
581 rt = _mm_mul_ps(r00,gbscale);
582 gbitab = _mm_cvttps_epi32(rt);
583 gbeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(gbitab));
584 gbitab = _mm_slli_epi32(gbitab,2);
586 Y = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,0) );
587 F = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,1) );
588 G = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,2) );
589 H = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,3) );
590 _MM_TRANSPOSE4_PS(Y,F,G,H);
591 Heps = _mm_mul_ps(gbeps,H);
592 Fp = _mm_add_ps(F,_mm_mul_ps(gbeps,_mm_add_ps(G,Heps)));
593 VV = _mm_add_ps(Y,_mm_mul_ps(gbeps,Fp));
594 vgb = _mm_mul_ps(gbqqfactor,VV);
596 FF = _mm_add_ps(Fp,_mm_mul_ps(gbeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
597 fgb = _mm_mul_ps(gbqqfactor,_mm_mul_ps(FF,gbscale));
598 dvdatmp = _mm_mul_ps(minushalf,_mm_add_ps(vgb,_mm_mul_ps(fgb,r00)));
599 dvdasum = _mm_add_ps(dvdasum,dvdatmp);
604 gmx_mm_increment_4real_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,_mm_mul_ps(dvdatmp,_mm_mul_ps(isaj0,isaj0)));
605 velec = _mm_mul_ps(qq00,rinv00);
606 felec = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(velec,rinv00),fgb),rinv00);
610 /* Calculate temporary vectorial force */
611 tx = _mm_mul_ps(fscal,dx00);
612 ty = _mm_mul_ps(fscal,dy00);
613 tz = _mm_mul_ps(fscal,dz00);
615 /* Update vectorial force */
616 fix0 = _mm_add_ps(fix0,tx);
617 fiy0 = _mm_add_ps(fiy0,ty);
618 fiz0 = _mm_add_ps(fiz0,tz);
620 fjptrA = f+j_coord_offsetA;
621 fjptrB = f+j_coord_offsetB;
622 fjptrC = f+j_coord_offsetC;
623 fjptrD = f+j_coord_offsetD;
624 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
626 /* Inner loop uses 56 flops */
632 /* Get j neighbor index, and coordinate index */
633 jnrlistA = jjnr[jidx];
634 jnrlistB = jjnr[jidx+1];
635 jnrlistC = jjnr[jidx+2];
636 jnrlistD = jjnr[jidx+3];
637 /* Sign of each element will be negative for non-real atoms.
638 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
639 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
641 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
642 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
643 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
644 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
645 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
646 j_coord_offsetA = DIM*jnrA;
647 j_coord_offsetB = DIM*jnrB;
648 j_coord_offsetC = DIM*jnrC;
649 j_coord_offsetD = DIM*jnrD;
651 /* load j atom coordinates */
652 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
653 x+j_coord_offsetC,x+j_coord_offsetD,
656 /* Calculate displacement vector */
657 dx00 = _mm_sub_ps(ix0,jx0);
658 dy00 = _mm_sub_ps(iy0,jy0);
659 dz00 = _mm_sub_ps(iz0,jz0);
661 /* Calculate squared distance and things based on it */
662 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
664 rinv00 = gmx_mm_invsqrt_ps(rsq00);
666 /* Load parameters for j particles */
667 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
668 charge+jnrC+0,charge+jnrD+0);
669 isaj0 = gmx_mm_load_4real_swizzle_ps(invsqrta+jnrA+0,invsqrta+jnrB+0,
670 invsqrta+jnrC+0,invsqrta+jnrD+0);
672 /**************************
673 * CALCULATE INTERACTIONS *
674 **************************/
676 r00 = _mm_mul_ps(rsq00,rinv00);
677 r00 = _mm_andnot_ps(dummy_mask,r00);
679 /* Compute parameters for interactions between i and j atoms */
680 qq00 = _mm_mul_ps(iq0,jq0);
682 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
683 isaprod = _mm_mul_ps(isai0,isaj0);
684 gbqqfactor = _mm_xor_ps(signbit,_mm_mul_ps(qq00,_mm_mul_ps(isaprod,gbinvepsdiff)));
685 gbscale = _mm_mul_ps(isaprod,gbtabscale);
687 /* Calculate generalized born table index - this is a separate table from the normal one,
688 * but we use the same procedure by multiplying r with scale and truncating to integer.
690 rt = _mm_mul_ps(r00,gbscale);
691 gbitab = _mm_cvttps_epi32(rt);
692 gbeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(gbitab));
693 gbitab = _mm_slli_epi32(gbitab,2);
695 Y = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,0) );
696 F = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,1) );
697 G = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,2) );
698 H = _mm_load_ps( gbtab + gmx_mm_extract_epi32(gbitab,3) );
699 _MM_TRANSPOSE4_PS(Y,F,G,H);
700 Heps = _mm_mul_ps(gbeps,H);
701 Fp = _mm_add_ps(F,_mm_mul_ps(gbeps,_mm_add_ps(G,Heps)));
702 VV = _mm_add_ps(Y,_mm_mul_ps(gbeps,Fp));
703 vgb = _mm_mul_ps(gbqqfactor,VV);
705 FF = _mm_add_ps(Fp,_mm_mul_ps(gbeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
706 fgb = _mm_mul_ps(gbqqfactor,_mm_mul_ps(FF,gbscale));
707 dvdatmp = _mm_mul_ps(minushalf,_mm_add_ps(vgb,_mm_mul_ps(fgb,r00)));
708 dvdatmp = _mm_andnot_ps(dummy_mask,dvdatmp);
709 dvdasum = _mm_add_ps(dvdasum,dvdatmp);
710 /* The pointers to scratch make sure that this code with compilers that take gmx_restrict seriously (e.g. icc 13) really can't screw things up. */
711 fjptrA = (jnrlistA>=0) ? dvda+jnrA : scratch;
712 fjptrB = (jnrlistB>=0) ? dvda+jnrB : scratch;
713 fjptrC = (jnrlistC>=0) ? dvda+jnrC : scratch;
714 fjptrD = (jnrlistD>=0) ? dvda+jnrD : scratch;
715 gmx_mm_increment_4real_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,_mm_mul_ps(dvdatmp,_mm_mul_ps(isaj0,isaj0)));
716 velec = _mm_mul_ps(qq00,rinv00);
717 felec = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(velec,rinv00),fgb),rinv00);
721 fscal = _mm_andnot_ps(dummy_mask,fscal);
723 /* Calculate temporary vectorial force */
724 tx = _mm_mul_ps(fscal,dx00);
725 ty = _mm_mul_ps(fscal,dy00);
726 tz = _mm_mul_ps(fscal,dz00);
728 /* Update vectorial force */
729 fix0 = _mm_add_ps(fix0,tx);
730 fiy0 = _mm_add_ps(fiy0,ty);
731 fiz0 = _mm_add_ps(fiz0,tz);
733 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
734 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
735 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
736 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
737 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
739 /* Inner loop uses 57 flops */
742 /* End of innermost loop */
744 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
745 f+i_coord_offset,fshift+i_shift_offset);
747 dvdasum = _mm_mul_ps(dvdasum, _mm_mul_ps(isai0,isai0));
748 gmx_mm_update_1pot_ps(dvdasum,dvda+inr);
750 /* Increment number of inner iterations */
751 inneriter += j_index_end - j_index_start;
753 /* Outer loop uses 7 flops */
756 /* Increment number of outer iterations */
759 /* Update outer/inner flops */
761 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*57);