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36 * Note: this file was generated by the GROMACS sse2_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW4P1_VF_sse2_single
51 * Electrostatics interaction: Ewald
52 * VdW interaction: LJEwald
53 * Geometry: Water4-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecEw_VdwLJEw_GeomW4P1_VF_sse2_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
75 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
81 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
89 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
90 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
91 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
92 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
93 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
94 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
95 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
96 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
99 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
102 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
103 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
108 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
110 __m128 one_half = _mm_set1_ps(0.5);
111 __m128 minus_one = _mm_set1_ps(-1.0);
113 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
115 __m128 dummy_mask,cutoff_mask;
116 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
117 __m128 one = _mm_set1_ps(1.0);
118 __m128 two = _mm_set1_ps(2.0);
124 jindex = nlist->jindex;
126 shiftidx = nlist->shift;
128 shiftvec = fr->shift_vec[0];
129 fshift = fr->fshift[0];
130 facel = _mm_set1_ps(fr->ic->epsfac);
131 charge = mdatoms->chargeA;
132 nvdwtype = fr->ntype;
134 vdwtype = mdatoms->typeA;
135 vdwgridparam = fr->ljpme_c6grid;
136 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
137 ewclj = _mm_set1_ps(fr->ic->ewaldcoeff_lj);
138 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
140 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
141 ewtab = fr->ic->tabq_coul_FDV0;
142 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
143 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
145 /* Setup water-specific parameters */
146 inr = nlist->iinr[0];
147 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
148 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
149 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
150 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
152 /* Avoid stupid compiler warnings */
153 jnrA = jnrB = jnrC = jnrD = 0;
162 for(iidx=0;iidx<4*DIM;iidx++)
167 /* Start outer loop over neighborlists */
168 for(iidx=0; iidx<nri; iidx++)
170 /* Load shift vector for this list */
171 i_shift_offset = DIM*shiftidx[iidx];
173 /* Load limits for loop over neighbors */
174 j_index_start = jindex[iidx];
175 j_index_end = jindex[iidx+1];
177 /* Get outer coordinate index */
179 i_coord_offset = DIM*inr;
181 /* Load i particle coords and add shift vector */
182 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
183 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
185 fix0 = _mm_setzero_ps();
186 fiy0 = _mm_setzero_ps();
187 fiz0 = _mm_setzero_ps();
188 fix1 = _mm_setzero_ps();
189 fiy1 = _mm_setzero_ps();
190 fiz1 = _mm_setzero_ps();
191 fix2 = _mm_setzero_ps();
192 fiy2 = _mm_setzero_ps();
193 fiz2 = _mm_setzero_ps();
194 fix3 = _mm_setzero_ps();
195 fiy3 = _mm_setzero_ps();
196 fiz3 = _mm_setzero_ps();
198 /* Reset potential sums */
199 velecsum = _mm_setzero_ps();
200 vvdwsum = _mm_setzero_ps();
202 /* Start inner kernel loop */
203 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
206 /* Get j neighbor index, and coordinate index */
211 j_coord_offsetA = DIM*jnrA;
212 j_coord_offsetB = DIM*jnrB;
213 j_coord_offsetC = DIM*jnrC;
214 j_coord_offsetD = DIM*jnrD;
216 /* load j atom coordinates */
217 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
218 x+j_coord_offsetC,x+j_coord_offsetD,
221 /* Calculate displacement vector */
222 dx00 = _mm_sub_ps(ix0,jx0);
223 dy00 = _mm_sub_ps(iy0,jy0);
224 dz00 = _mm_sub_ps(iz0,jz0);
225 dx10 = _mm_sub_ps(ix1,jx0);
226 dy10 = _mm_sub_ps(iy1,jy0);
227 dz10 = _mm_sub_ps(iz1,jz0);
228 dx20 = _mm_sub_ps(ix2,jx0);
229 dy20 = _mm_sub_ps(iy2,jy0);
230 dz20 = _mm_sub_ps(iz2,jz0);
231 dx30 = _mm_sub_ps(ix3,jx0);
232 dy30 = _mm_sub_ps(iy3,jy0);
233 dz30 = _mm_sub_ps(iz3,jz0);
235 /* Calculate squared distance and things based on it */
236 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
237 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
238 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
239 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
241 rinv00 = sse2_invsqrt_f(rsq00);
242 rinv10 = sse2_invsqrt_f(rsq10);
243 rinv20 = sse2_invsqrt_f(rsq20);
244 rinv30 = sse2_invsqrt_f(rsq30);
246 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
247 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
248 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
249 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
251 /* Load parameters for j particles */
252 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
253 charge+jnrC+0,charge+jnrD+0);
254 vdwjidx0A = 2*vdwtype[jnrA+0];
255 vdwjidx0B = 2*vdwtype[jnrB+0];
256 vdwjidx0C = 2*vdwtype[jnrC+0];
257 vdwjidx0D = 2*vdwtype[jnrD+0];
259 fjx0 = _mm_setzero_ps();
260 fjy0 = _mm_setzero_ps();
261 fjz0 = _mm_setzero_ps();
263 /**************************
264 * CALCULATE INTERACTIONS *
265 **************************/
267 r00 = _mm_mul_ps(rsq00,rinv00);
269 /* Compute parameters for interactions between i and j atoms */
270 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
271 vdwparam+vdwioffset0+vdwjidx0B,
272 vdwparam+vdwioffset0+vdwjidx0C,
273 vdwparam+vdwioffset0+vdwjidx0D,
275 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
276 vdwgridparam+vdwioffset0+vdwjidx0B,
277 vdwgridparam+vdwioffset0+vdwjidx0C,
278 vdwgridparam+vdwioffset0+vdwjidx0D);
280 /* Analytical LJ-PME */
281 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
282 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
283 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
284 exponent = sse2_exp_f(ewcljrsq);
285 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
286 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
287 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
288 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
289 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
290 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
291 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
292 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
294 /* Update potential sum for this i atom from the interaction with this j atom. */
295 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
299 /* Calculate temporary vectorial force */
300 tx = _mm_mul_ps(fscal,dx00);
301 ty = _mm_mul_ps(fscal,dy00);
302 tz = _mm_mul_ps(fscal,dz00);
304 /* Update vectorial force */
305 fix0 = _mm_add_ps(fix0,tx);
306 fiy0 = _mm_add_ps(fiy0,ty);
307 fiz0 = _mm_add_ps(fiz0,tz);
309 fjx0 = _mm_add_ps(fjx0,tx);
310 fjy0 = _mm_add_ps(fjy0,ty);
311 fjz0 = _mm_add_ps(fjz0,tz);
313 /**************************
314 * CALCULATE INTERACTIONS *
315 **************************/
317 r10 = _mm_mul_ps(rsq10,rinv10);
319 /* Compute parameters for interactions between i and j atoms */
320 qq10 = _mm_mul_ps(iq1,jq0);
322 /* EWALD ELECTROSTATICS */
324 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
325 ewrt = _mm_mul_ps(r10,ewtabscale);
326 ewitab = _mm_cvttps_epi32(ewrt);
327 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
328 ewitab = _mm_slli_epi32(ewitab,2);
329 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
330 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
331 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
332 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
333 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
334 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
335 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
336 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
337 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
339 /* Update potential sum for this i atom from the interaction with this j atom. */
340 velecsum = _mm_add_ps(velecsum,velec);
344 /* Calculate temporary vectorial force */
345 tx = _mm_mul_ps(fscal,dx10);
346 ty = _mm_mul_ps(fscal,dy10);
347 tz = _mm_mul_ps(fscal,dz10);
349 /* Update vectorial force */
350 fix1 = _mm_add_ps(fix1,tx);
351 fiy1 = _mm_add_ps(fiy1,ty);
352 fiz1 = _mm_add_ps(fiz1,tz);
354 fjx0 = _mm_add_ps(fjx0,tx);
355 fjy0 = _mm_add_ps(fjy0,ty);
356 fjz0 = _mm_add_ps(fjz0,tz);
358 /**************************
359 * CALCULATE INTERACTIONS *
360 **************************/
362 r20 = _mm_mul_ps(rsq20,rinv20);
364 /* Compute parameters for interactions between i and j atoms */
365 qq20 = _mm_mul_ps(iq2,jq0);
367 /* EWALD ELECTROSTATICS */
369 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
370 ewrt = _mm_mul_ps(r20,ewtabscale);
371 ewitab = _mm_cvttps_epi32(ewrt);
372 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
373 ewitab = _mm_slli_epi32(ewitab,2);
374 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
375 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
376 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
377 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
378 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
379 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
380 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
381 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
382 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
384 /* Update potential sum for this i atom from the interaction with this j atom. */
385 velecsum = _mm_add_ps(velecsum,velec);
389 /* Calculate temporary vectorial force */
390 tx = _mm_mul_ps(fscal,dx20);
391 ty = _mm_mul_ps(fscal,dy20);
392 tz = _mm_mul_ps(fscal,dz20);
394 /* Update vectorial force */
395 fix2 = _mm_add_ps(fix2,tx);
396 fiy2 = _mm_add_ps(fiy2,ty);
397 fiz2 = _mm_add_ps(fiz2,tz);
399 fjx0 = _mm_add_ps(fjx0,tx);
400 fjy0 = _mm_add_ps(fjy0,ty);
401 fjz0 = _mm_add_ps(fjz0,tz);
403 /**************************
404 * CALCULATE INTERACTIONS *
405 **************************/
407 r30 = _mm_mul_ps(rsq30,rinv30);
409 /* Compute parameters for interactions between i and j atoms */
410 qq30 = _mm_mul_ps(iq3,jq0);
412 /* EWALD ELECTROSTATICS */
414 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
415 ewrt = _mm_mul_ps(r30,ewtabscale);
416 ewitab = _mm_cvttps_epi32(ewrt);
417 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
418 ewitab = _mm_slli_epi32(ewitab,2);
419 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
420 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
421 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
422 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
423 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
424 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
425 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
426 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
427 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
429 /* Update potential sum for this i atom from the interaction with this j atom. */
430 velecsum = _mm_add_ps(velecsum,velec);
434 /* Calculate temporary vectorial force */
435 tx = _mm_mul_ps(fscal,dx30);
436 ty = _mm_mul_ps(fscal,dy30);
437 tz = _mm_mul_ps(fscal,dz30);
439 /* Update vectorial force */
440 fix3 = _mm_add_ps(fix3,tx);
441 fiy3 = _mm_add_ps(fiy3,ty);
442 fiz3 = _mm_add_ps(fiz3,tz);
444 fjx0 = _mm_add_ps(fjx0,tx);
445 fjy0 = _mm_add_ps(fjy0,ty);
446 fjz0 = _mm_add_ps(fjz0,tz);
448 fjptrA = f+j_coord_offsetA;
449 fjptrB = f+j_coord_offsetB;
450 fjptrC = f+j_coord_offsetC;
451 fjptrD = f+j_coord_offsetD;
453 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
455 /* Inner loop uses 174 flops */
461 /* Get j neighbor index, and coordinate index */
462 jnrlistA = jjnr[jidx];
463 jnrlistB = jjnr[jidx+1];
464 jnrlistC = jjnr[jidx+2];
465 jnrlistD = jjnr[jidx+3];
466 /* Sign of each element will be negative for non-real atoms.
467 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
468 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
470 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
471 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
472 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
473 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
474 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
475 j_coord_offsetA = DIM*jnrA;
476 j_coord_offsetB = DIM*jnrB;
477 j_coord_offsetC = DIM*jnrC;
478 j_coord_offsetD = DIM*jnrD;
480 /* load j atom coordinates */
481 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
482 x+j_coord_offsetC,x+j_coord_offsetD,
485 /* Calculate displacement vector */
486 dx00 = _mm_sub_ps(ix0,jx0);
487 dy00 = _mm_sub_ps(iy0,jy0);
488 dz00 = _mm_sub_ps(iz0,jz0);
489 dx10 = _mm_sub_ps(ix1,jx0);
490 dy10 = _mm_sub_ps(iy1,jy0);
491 dz10 = _mm_sub_ps(iz1,jz0);
492 dx20 = _mm_sub_ps(ix2,jx0);
493 dy20 = _mm_sub_ps(iy2,jy0);
494 dz20 = _mm_sub_ps(iz2,jz0);
495 dx30 = _mm_sub_ps(ix3,jx0);
496 dy30 = _mm_sub_ps(iy3,jy0);
497 dz30 = _mm_sub_ps(iz3,jz0);
499 /* Calculate squared distance and things based on it */
500 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
501 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
502 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
503 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
505 rinv00 = sse2_invsqrt_f(rsq00);
506 rinv10 = sse2_invsqrt_f(rsq10);
507 rinv20 = sse2_invsqrt_f(rsq20);
508 rinv30 = sse2_invsqrt_f(rsq30);
510 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
511 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
512 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
513 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
515 /* Load parameters for j particles */
516 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
517 charge+jnrC+0,charge+jnrD+0);
518 vdwjidx0A = 2*vdwtype[jnrA+0];
519 vdwjidx0B = 2*vdwtype[jnrB+0];
520 vdwjidx0C = 2*vdwtype[jnrC+0];
521 vdwjidx0D = 2*vdwtype[jnrD+0];
523 fjx0 = _mm_setzero_ps();
524 fjy0 = _mm_setzero_ps();
525 fjz0 = _mm_setzero_ps();
527 /**************************
528 * CALCULATE INTERACTIONS *
529 **************************/
531 r00 = _mm_mul_ps(rsq00,rinv00);
532 r00 = _mm_andnot_ps(dummy_mask,r00);
534 /* Compute parameters for interactions between i and j atoms */
535 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
536 vdwparam+vdwioffset0+vdwjidx0B,
537 vdwparam+vdwioffset0+vdwjidx0C,
538 vdwparam+vdwioffset0+vdwjidx0D,
540 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
541 vdwgridparam+vdwioffset0+vdwjidx0B,
542 vdwgridparam+vdwioffset0+vdwjidx0C,
543 vdwgridparam+vdwioffset0+vdwjidx0D);
545 /* Analytical LJ-PME */
546 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
547 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
548 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
549 exponent = sse2_exp_f(ewcljrsq);
550 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
551 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
552 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
553 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
554 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
555 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
556 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
557 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
559 /* Update potential sum for this i atom from the interaction with this j atom. */
560 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
561 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
565 fscal = _mm_andnot_ps(dummy_mask,fscal);
567 /* Calculate temporary vectorial force */
568 tx = _mm_mul_ps(fscal,dx00);
569 ty = _mm_mul_ps(fscal,dy00);
570 tz = _mm_mul_ps(fscal,dz00);
572 /* Update vectorial force */
573 fix0 = _mm_add_ps(fix0,tx);
574 fiy0 = _mm_add_ps(fiy0,ty);
575 fiz0 = _mm_add_ps(fiz0,tz);
577 fjx0 = _mm_add_ps(fjx0,tx);
578 fjy0 = _mm_add_ps(fjy0,ty);
579 fjz0 = _mm_add_ps(fjz0,tz);
581 /**************************
582 * CALCULATE INTERACTIONS *
583 **************************/
585 r10 = _mm_mul_ps(rsq10,rinv10);
586 r10 = _mm_andnot_ps(dummy_mask,r10);
588 /* Compute parameters for interactions between i and j atoms */
589 qq10 = _mm_mul_ps(iq1,jq0);
591 /* EWALD ELECTROSTATICS */
593 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
594 ewrt = _mm_mul_ps(r10,ewtabscale);
595 ewitab = _mm_cvttps_epi32(ewrt);
596 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
597 ewitab = _mm_slli_epi32(ewitab,2);
598 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
599 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
600 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
601 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
602 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
603 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
604 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
605 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
606 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
608 /* Update potential sum for this i atom from the interaction with this j atom. */
609 velec = _mm_andnot_ps(dummy_mask,velec);
610 velecsum = _mm_add_ps(velecsum,velec);
614 fscal = _mm_andnot_ps(dummy_mask,fscal);
616 /* Calculate temporary vectorial force */
617 tx = _mm_mul_ps(fscal,dx10);
618 ty = _mm_mul_ps(fscal,dy10);
619 tz = _mm_mul_ps(fscal,dz10);
621 /* Update vectorial force */
622 fix1 = _mm_add_ps(fix1,tx);
623 fiy1 = _mm_add_ps(fiy1,ty);
624 fiz1 = _mm_add_ps(fiz1,tz);
626 fjx0 = _mm_add_ps(fjx0,tx);
627 fjy0 = _mm_add_ps(fjy0,ty);
628 fjz0 = _mm_add_ps(fjz0,tz);
630 /**************************
631 * CALCULATE INTERACTIONS *
632 **************************/
634 r20 = _mm_mul_ps(rsq20,rinv20);
635 r20 = _mm_andnot_ps(dummy_mask,r20);
637 /* Compute parameters for interactions between i and j atoms */
638 qq20 = _mm_mul_ps(iq2,jq0);
640 /* EWALD ELECTROSTATICS */
642 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
643 ewrt = _mm_mul_ps(r20,ewtabscale);
644 ewitab = _mm_cvttps_epi32(ewrt);
645 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
646 ewitab = _mm_slli_epi32(ewitab,2);
647 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
648 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
649 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
650 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
651 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
652 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
653 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
654 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
655 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
657 /* Update potential sum for this i atom from the interaction with this j atom. */
658 velec = _mm_andnot_ps(dummy_mask,velec);
659 velecsum = _mm_add_ps(velecsum,velec);
663 fscal = _mm_andnot_ps(dummy_mask,fscal);
665 /* Calculate temporary vectorial force */
666 tx = _mm_mul_ps(fscal,dx20);
667 ty = _mm_mul_ps(fscal,dy20);
668 tz = _mm_mul_ps(fscal,dz20);
670 /* Update vectorial force */
671 fix2 = _mm_add_ps(fix2,tx);
672 fiy2 = _mm_add_ps(fiy2,ty);
673 fiz2 = _mm_add_ps(fiz2,tz);
675 fjx0 = _mm_add_ps(fjx0,tx);
676 fjy0 = _mm_add_ps(fjy0,ty);
677 fjz0 = _mm_add_ps(fjz0,tz);
679 /**************************
680 * CALCULATE INTERACTIONS *
681 **************************/
683 r30 = _mm_mul_ps(rsq30,rinv30);
684 r30 = _mm_andnot_ps(dummy_mask,r30);
686 /* Compute parameters for interactions between i and j atoms */
687 qq30 = _mm_mul_ps(iq3,jq0);
689 /* EWALD ELECTROSTATICS */
691 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
692 ewrt = _mm_mul_ps(r30,ewtabscale);
693 ewitab = _mm_cvttps_epi32(ewrt);
694 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
695 ewitab = _mm_slli_epi32(ewitab,2);
696 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
697 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
698 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
699 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
700 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
701 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
702 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
703 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
704 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
706 /* Update potential sum for this i atom from the interaction with this j atom. */
707 velec = _mm_andnot_ps(dummy_mask,velec);
708 velecsum = _mm_add_ps(velecsum,velec);
712 fscal = _mm_andnot_ps(dummy_mask,fscal);
714 /* Calculate temporary vectorial force */
715 tx = _mm_mul_ps(fscal,dx30);
716 ty = _mm_mul_ps(fscal,dy30);
717 tz = _mm_mul_ps(fscal,dz30);
719 /* Update vectorial force */
720 fix3 = _mm_add_ps(fix3,tx);
721 fiy3 = _mm_add_ps(fiy3,ty);
722 fiz3 = _mm_add_ps(fiz3,tz);
724 fjx0 = _mm_add_ps(fjx0,tx);
725 fjy0 = _mm_add_ps(fjy0,ty);
726 fjz0 = _mm_add_ps(fjz0,tz);
728 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
729 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
730 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
731 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
733 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
735 /* Inner loop uses 178 flops */
738 /* End of innermost loop */
740 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
741 f+i_coord_offset,fshift+i_shift_offset);
744 /* Update potential energies */
745 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
746 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
748 /* Increment number of inner iterations */
749 inneriter += j_index_end - j_index_start;
751 /* Outer loop uses 26 flops */
754 /* Increment number of outer iterations */
757 /* Update outer/inner flops */
759 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*178);
762 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW4P1_F_sse2_single
763 * Electrostatics interaction: Ewald
764 * VdW interaction: LJEwald
765 * Geometry: Water4-Particle
766 * Calculate force/pot: Force
769 nb_kernel_ElecEw_VdwLJEw_GeomW4P1_F_sse2_single
770 (t_nblist * gmx_restrict nlist,
771 rvec * gmx_restrict xx,
772 rvec * gmx_restrict ff,
773 struct t_forcerec * gmx_restrict fr,
774 t_mdatoms * gmx_restrict mdatoms,
775 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
776 t_nrnb * gmx_restrict nrnb)
778 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
779 * just 0 for non-waters.
780 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
781 * jnr indices corresponding to data put in the four positions in the SIMD register.
783 int i_shift_offset,i_coord_offset,outeriter,inneriter;
784 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
785 int jnrA,jnrB,jnrC,jnrD;
786 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
787 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
788 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
790 real *shiftvec,*fshift,*x,*f;
791 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
793 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
795 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
797 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
799 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
801 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
802 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
803 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
804 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
805 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
806 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
807 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
808 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
811 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
814 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
815 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
820 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
822 __m128 one_half = _mm_set1_ps(0.5);
823 __m128 minus_one = _mm_set1_ps(-1.0);
825 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
827 __m128 dummy_mask,cutoff_mask;
828 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
829 __m128 one = _mm_set1_ps(1.0);
830 __m128 two = _mm_set1_ps(2.0);
836 jindex = nlist->jindex;
838 shiftidx = nlist->shift;
840 shiftvec = fr->shift_vec[0];
841 fshift = fr->fshift[0];
842 facel = _mm_set1_ps(fr->ic->epsfac);
843 charge = mdatoms->chargeA;
844 nvdwtype = fr->ntype;
846 vdwtype = mdatoms->typeA;
847 vdwgridparam = fr->ljpme_c6grid;
848 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
849 ewclj = _mm_set1_ps(fr->ic->ewaldcoeff_lj);
850 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
852 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
853 ewtab = fr->ic->tabq_coul_F;
854 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
855 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
857 /* Setup water-specific parameters */
858 inr = nlist->iinr[0];
859 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
860 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
861 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
862 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
864 /* Avoid stupid compiler warnings */
865 jnrA = jnrB = jnrC = jnrD = 0;
874 for(iidx=0;iidx<4*DIM;iidx++)
879 /* Start outer loop over neighborlists */
880 for(iidx=0; iidx<nri; iidx++)
882 /* Load shift vector for this list */
883 i_shift_offset = DIM*shiftidx[iidx];
885 /* Load limits for loop over neighbors */
886 j_index_start = jindex[iidx];
887 j_index_end = jindex[iidx+1];
889 /* Get outer coordinate index */
891 i_coord_offset = DIM*inr;
893 /* Load i particle coords and add shift vector */
894 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
895 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
897 fix0 = _mm_setzero_ps();
898 fiy0 = _mm_setzero_ps();
899 fiz0 = _mm_setzero_ps();
900 fix1 = _mm_setzero_ps();
901 fiy1 = _mm_setzero_ps();
902 fiz1 = _mm_setzero_ps();
903 fix2 = _mm_setzero_ps();
904 fiy2 = _mm_setzero_ps();
905 fiz2 = _mm_setzero_ps();
906 fix3 = _mm_setzero_ps();
907 fiy3 = _mm_setzero_ps();
908 fiz3 = _mm_setzero_ps();
910 /* Start inner kernel loop */
911 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
914 /* Get j neighbor index, and coordinate index */
919 j_coord_offsetA = DIM*jnrA;
920 j_coord_offsetB = DIM*jnrB;
921 j_coord_offsetC = DIM*jnrC;
922 j_coord_offsetD = DIM*jnrD;
924 /* load j atom coordinates */
925 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
926 x+j_coord_offsetC,x+j_coord_offsetD,
929 /* Calculate displacement vector */
930 dx00 = _mm_sub_ps(ix0,jx0);
931 dy00 = _mm_sub_ps(iy0,jy0);
932 dz00 = _mm_sub_ps(iz0,jz0);
933 dx10 = _mm_sub_ps(ix1,jx0);
934 dy10 = _mm_sub_ps(iy1,jy0);
935 dz10 = _mm_sub_ps(iz1,jz0);
936 dx20 = _mm_sub_ps(ix2,jx0);
937 dy20 = _mm_sub_ps(iy2,jy0);
938 dz20 = _mm_sub_ps(iz2,jz0);
939 dx30 = _mm_sub_ps(ix3,jx0);
940 dy30 = _mm_sub_ps(iy3,jy0);
941 dz30 = _mm_sub_ps(iz3,jz0);
943 /* Calculate squared distance and things based on it */
944 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
945 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
946 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
947 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
949 rinv00 = sse2_invsqrt_f(rsq00);
950 rinv10 = sse2_invsqrt_f(rsq10);
951 rinv20 = sse2_invsqrt_f(rsq20);
952 rinv30 = sse2_invsqrt_f(rsq30);
954 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
955 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
956 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
957 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
959 /* Load parameters for j particles */
960 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
961 charge+jnrC+0,charge+jnrD+0);
962 vdwjidx0A = 2*vdwtype[jnrA+0];
963 vdwjidx0B = 2*vdwtype[jnrB+0];
964 vdwjidx0C = 2*vdwtype[jnrC+0];
965 vdwjidx0D = 2*vdwtype[jnrD+0];
967 fjx0 = _mm_setzero_ps();
968 fjy0 = _mm_setzero_ps();
969 fjz0 = _mm_setzero_ps();
971 /**************************
972 * CALCULATE INTERACTIONS *
973 **************************/
975 r00 = _mm_mul_ps(rsq00,rinv00);
977 /* Compute parameters for interactions between i and j atoms */
978 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
979 vdwparam+vdwioffset0+vdwjidx0B,
980 vdwparam+vdwioffset0+vdwjidx0C,
981 vdwparam+vdwioffset0+vdwjidx0D,
983 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
984 vdwgridparam+vdwioffset0+vdwjidx0B,
985 vdwgridparam+vdwioffset0+vdwjidx0C,
986 vdwgridparam+vdwioffset0+vdwjidx0D);
988 /* Analytical LJ-PME */
989 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
990 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
991 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
992 exponent = sse2_exp_f(ewcljrsq);
993 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
994 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
995 /* f6A = 6 * C6grid * (1 - poly) */
996 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
997 /* f6B = C6grid * exponent * beta^6 */
998 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
999 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1000 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1004 /* Calculate temporary vectorial force */
1005 tx = _mm_mul_ps(fscal,dx00);
1006 ty = _mm_mul_ps(fscal,dy00);
1007 tz = _mm_mul_ps(fscal,dz00);
1009 /* Update vectorial force */
1010 fix0 = _mm_add_ps(fix0,tx);
1011 fiy0 = _mm_add_ps(fiy0,ty);
1012 fiz0 = _mm_add_ps(fiz0,tz);
1014 fjx0 = _mm_add_ps(fjx0,tx);
1015 fjy0 = _mm_add_ps(fjy0,ty);
1016 fjz0 = _mm_add_ps(fjz0,tz);
1018 /**************************
1019 * CALCULATE INTERACTIONS *
1020 **************************/
1022 r10 = _mm_mul_ps(rsq10,rinv10);
1024 /* Compute parameters for interactions between i and j atoms */
1025 qq10 = _mm_mul_ps(iq1,jq0);
1027 /* EWALD ELECTROSTATICS */
1029 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1030 ewrt = _mm_mul_ps(r10,ewtabscale);
1031 ewitab = _mm_cvttps_epi32(ewrt);
1032 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1033 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1034 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1036 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1037 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1041 /* Calculate temporary vectorial force */
1042 tx = _mm_mul_ps(fscal,dx10);
1043 ty = _mm_mul_ps(fscal,dy10);
1044 tz = _mm_mul_ps(fscal,dz10);
1046 /* Update vectorial force */
1047 fix1 = _mm_add_ps(fix1,tx);
1048 fiy1 = _mm_add_ps(fiy1,ty);
1049 fiz1 = _mm_add_ps(fiz1,tz);
1051 fjx0 = _mm_add_ps(fjx0,tx);
1052 fjy0 = _mm_add_ps(fjy0,ty);
1053 fjz0 = _mm_add_ps(fjz0,tz);
1055 /**************************
1056 * CALCULATE INTERACTIONS *
1057 **************************/
1059 r20 = _mm_mul_ps(rsq20,rinv20);
1061 /* Compute parameters for interactions between i and j atoms */
1062 qq20 = _mm_mul_ps(iq2,jq0);
1064 /* EWALD ELECTROSTATICS */
1066 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1067 ewrt = _mm_mul_ps(r20,ewtabscale);
1068 ewitab = _mm_cvttps_epi32(ewrt);
1069 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1070 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1071 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1073 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1074 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1078 /* Calculate temporary vectorial force */
1079 tx = _mm_mul_ps(fscal,dx20);
1080 ty = _mm_mul_ps(fscal,dy20);
1081 tz = _mm_mul_ps(fscal,dz20);
1083 /* Update vectorial force */
1084 fix2 = _mm_add_ps(fix2,tx);
1085 fiy2 = _mm_add_ps(fiy2,ty);
1086 fiz2 = _mm_add_ps(fiz2,tz);
1088 fjx0 = _mm_add_ps(fjx0,tx);
1089 fjy0 = _mm_add_ps(fjy0,ty);
1090 fjz0 = _mm_add_ps(fjz0,tz);
1092 /**************************
1093 * CALCULATE INTERACTIONS *
1094 **************************/
1096 r30 = _mm_mul_ps(rsq30,rinv30);
1098 /* Compute parameters for interactions between i and j atoms */
1099 qq30 = _mm_mul_ps(iq3,jq0);
1101 /* EWALD ELECTROSTATICS */
1103 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1104 ewrt = _mm_mul_ps(r30,ewtabscale);
1105 ewitab = _mm_cvttps_epi32(ewrt);
1106 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1107 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1108 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1110 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1111 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1115 /* Calculate temporary vectorial force */
1116 tx = _mm_mul_ps(fscal,dx30);
1117 ty = _mm_mul_ps(fscal,dy30);
1118 tz = _mm_mul_ps(fscal,dz30);
1120 /* Update vectorial force */
1121 fix3 = _mm_add_ps(fix3,tx);
1122 fiy3 = _mm_add_ps(fiy3,ty);
1123 fiz3 = _mm_add_ps(fiz3,tz);
1125 fjx0 = _mm_add_ps(fjx0,tx);
1126 fjy0 = _mm_add_ps(fjy0,ty);
1127 fjz0 = _mm_add_ps(fjz0,tz);
1129 fjptrA = f+j_coord_offsetA;
1130 fjptrB = f+j_coord_offsetB;
1131 fjptrC = f+j_coord_offsetC;
1132 fjptrD = f+j_coord_offsetD;
1134 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1136 /* Inner loop uses 154 flops */
1139 if(jidx<j_index_end)
1142 /* Get j neighbor index, and coordinate index */
1143 jnrlistA = jjnr[jidx];
1144 jnrlistB = jjnr[jidx+1];
1145 jnrlistC = jjnr[jidx+2];
1146 jnrlistD = jjnr[jidx+3];
1147 /* Sign of each element will be negative for non-real atoms.
1148 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1149 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1151 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1152 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1153 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1154 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1155 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1156 j_coord_offsetA = DIM*jnrA;
1157 j_coord_offsetB = DIM*jnrB;
1158 j_coord_offsetC = DIM*jnrC;
1159 j_coord_offsetD = DIM*jnrD;
1161 /* load j atom coordinates */
1162 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1163 x+j_coord_offsetC,x+j_coord_offsetD,
1166 /* Calculate displacement vector */
1167 dx00 = _mm_sub_ps(ix0,jx0);
1168 dy00 = _mm_sub_ps(iy0,jy0);
1169 dz00 = _mm_sub_ps(iz0,jz0);
1170 dx10 = _mm_sub_ps(ix1,jx0);
1171 dy10 = _mm_sub_ps(iy1,jy0);
1172 dz10 = _mm_sub_ps(iz1,jz0);
1173 dx20 = _mm_sub_ps(ix2,jx0);
1174 dy20 = _mm_sub_ps(iy2,jy0);
1175 dz20 = _mm_sub_ps(iz2,jz0);
1176 dx30 = _mm_sub_ps(ix3,jx0);
1177 dy30 = _mm_sub_ps(iy3,jy0);
1178 dz30 = _mm_sub_ps(iz3,jz0);
1180 /* Calculate squared distance and things based on it */
1181 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1182 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1183 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1184 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1186 rinv00 = sse2_invsqrt_f(rsq00);
1187 rinv10 = sse2_invsqrt_f(rsq10);
1188 rinv20 = sse2_invsqrt_f(rsq20);
1189 rinv30 = sse2_invsqrt_f(rsq30);
1191 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1192 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1193 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1194 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
1196 /* Load parameters for j particles */
1197 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1198 charge+jnrC+0,charge+jnrD+0);
1199 vdwjidx0A = 2*vdwtype[jnrA+0];
1200 vdwjidx0B = 2*vdwtype[jnrB+0];
1201 vdwjidx0C = 2*vdwtype[jnrC+0];
1202 vdwjidx0D = 2*vdwtype[jnrD+0];
1204 fjx0 = _mm_setzero_ps();
1205 fjy0 = _mm_setzero_ps();
1206 fjz0 = _mm_setzero_ps();
1208 /**************************
1209 * CALCULATE INTERACTIONS *
1210 **************************/
1212 r00 = _mm_mul_ps(rsq00,rinv00);
1213 r00 = _mm_andnot_ps(dummy_mask,r00);
1215 /* Compute parameters for interactions between i and j atoms */
1216 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1217 vdwparam+vdwioffset0+vdwjidx0B,
1218 vdwparam+vdwioffset0+vdwjidx0C,
1219 vdwparam+vdwioffset0+vdwjidx0D,
1221 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
1222 vdwgridparam+vdwioffset0+vdwjidx0B,
1223 vdwgridparam+vdwioffset0+vdwjidx0C,
1224 vdwgridparam+vdwioffset0+vdwjidx0D);
1226 /* Analytical LJ-PME */
1227 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1228 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
1229 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
1230 exponent = sse2_exp_f(ewcljrsq);
1231 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1232 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
1233 /* f6A = 6 * C6grid * (1 - poly) */
1234 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
1235 /* f6B = C6grid * exponent * beta^6 */
1236 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
1237 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1238 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1242 fscal = _mm_andnot_ps(dummy_mask,fscal);
1244 /* Calculate temporary vectorial force */
1245 tx = _mm_mul_ps(fscal,dx00);
1246 ty = _mm_mul_ps(fscal,dy00);
1247 tz = _mm_mul_ps(fscal,dz00);
1249 /* Update vectorial force */
1250 fix0 = _mm_add_ps(fix0,tx);
1251 fiy0 = _mm_add_ps(fiy0,ty);
1252 fiz0 = _mm_add_ps(fiz0,tz);
1254 fjx0 = _mm_add_ps(fjx0,tx);
1255 fjy0 = _mm_add_ps(fjy0,ty);
1256 fjz0 = _mm_add_ps(fjz0,tz);
1258 /**************************
1259 * CALCULATE INTERACTIONS *
1260 **************************/
1262 r10 = _mm_mul_ps(rsq10,rinv10);
1263 r10 = _mm_andnot_ps(dummy_mask,r10);
1265 /* Compute parameters for interactions between i and j atoms */
1266 qq10 = _mm_mul_ps(iq1,jq0);
1268 /* EWALD ELECTROSTATICS */
1270 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1271 ewrt = _mm_mul_ps(r10,ewtabscale);
1272 ewitab = _mm_cvttps_epi32(ewrt);
1273 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1274 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1275 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1277 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1278 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1282 fscal = _mm_andnot_ps(dummy_mask,fscal);
1284 /* Calculate temporary vectorial force */
1285 tx = _mm_mul_ps(fscal,dx10);
1286 ty = _mm_mul_ps(fscal,dy10);
1287 tz = _mm_mul_ps(fscal,dz10);
1289 /* Update vectorial force */
1290 fix1 = _mm_add_ps(fix1,tx);
1291 fiy1 = _mm_add_ps(fiy1,ty);
1292 fiz1 = _mm_add_ps(fiz1,tz);
1294 fjx0 = _mm_add_ps(fjx0,tx);
1295 fjy0 = _mm_add_ps(fjy0,ty);
1296 fjz0 = _mm_add_ps(fjz0,tz);
1298 /**************************
1299 * CALCULATE INTERACTIONS *
1300 **************************/
1302 r20 = _mm_mul_ps(rsq20,rinv20);
1303 r20 = _mm_andnot_ps(dummy_mask,r20);
1305 /* Compute parameters for interactions between i and j atoms */
1306 qq20 = _mm_mul_ps(iq2,jq0);
1308 /* EWALD ELECTROSTATICS */
1310 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1311 ewrt = _mm_mul_ps(r20,ewtabscale);
1312 ewitab = _mm_cvttps_epi32(ewrt);
1313 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1314 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1315 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1317 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1318 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1322 fscal = _mm_andnot_ps(dummy_mask,fscal);
1324 /* Calculate temporary vectorial force */
1325 tx = _mm_mul_ps(fscal,dx20);
1326 ty = _mm_mul_ps(fscal,dy20);
1327 tz = _mm_mul_ps(fscal,dz20);
1329 /* Update vectorial force */
1330 fix2 = _mm_add_ps(fix2,tx);
1331 fiy2 = _mm_add_ps(fiy2,ty);
1332 fiz2 = _mm_add_ps(fiz2,tz);
1334 fjx0 = _mm_add_ps(fjx0,tx);
1335 fjy0 = _mm_add_ps(fjy0,ty);
1336 fjz0 = _mm_add_ps(fjz0,tz);
1338 /**************************
1339 * CALCULATE INTERACTIONS *
1340 **************************/
1342 r30 = _mm_mul_ps(rsq30,rinv30);
1343 r30 = _mm_andnot_ps(dummy_mask,r30);
1345 /* Compute parameters for interactions between i and j atoms */
1346 qq30 = _mm_mul_ps(iq3,jq0);
1348 /* EWALD ELECTROSTATICS */
1350 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1351 ewrt = _mm_mul_ps(r30,ewtabscale);
1352 ewitab = _mm_cvttps_epi32(ewrt);
1353 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1354 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1355 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1357 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1358 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1362 fscal = _mm_andnot_ps(dummy_mask,fscal);
1364 /* Calculate temporary vectorial force */
1365 tx = _mm_mul_ps(fscal,dx30);
1366 ty = _mm_mul_ps(fscal,dy30);
1367 tz = _mm_mul_ps(fscal,dz30);
1369 /* Update vectorial force */
1370 fix3 = _mm_add_ps(fix3,tx);
1371 fiy3 = _mm_add_ps(fiy3,ty);
1372 fiz3 = _mm_add_ps(fiz3,tz);
1374 fjx0 = _mm_add_ps(fjx0,tx);
1375 fjy0 = _mm_add_ps(fjy0,ty);
1376 fjz0 = _mm_add_ps(fjz0,tz);
1378 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1379 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1380 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1381 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1383 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1385 /* Inner loop uses 158 flops */
1388 /* End of innermost loop */
1390 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1391 f+i_coord_offset,fshift+i_shift_offset);
1393 /* Increment number of inner iterations */
1394 inneriter += j_index_end - j_index_start;
1396 /* Outer loop uses 24 flops */
1399 /* Increment number of outer iterations */
1402 /* Update outer/inner flops */
1404 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*158);