2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS sse2_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_single
51 * Electrostatics interaction: Ewald
52 * VdW interaction: LJEwald
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
75 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
81 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
89 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
91 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
92 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
93 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
94 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
95 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
96 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
97 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
98 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
99 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
100 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
101 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
102 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
103 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
106 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
109 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
110 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
120 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
122 __m128 one_half = _mm_set1_ps(0.5);
123 __m128 minus_one = _mm_set1_ps(-1.0);
125 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
127 __m128 dummy_mask,cutoff_mask;
128 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
129 __m128 one = _mm_set1_ps(1.0);
130 __m128 two = _mm_set1_ps(2.0);
136 jindex = nlist->jindex;
138 shiftidx = nlist->shift;
140 shiftvec = fr->shift_vec[0];
141 fshift = fr->fshift[0];
142 facel = _mm_set1_ps(fr->ic->epsfac);
143 charge = mdatoms->chargeA;
144 nvdwtype = fr->ntype;
146 vdwtype = mdatoms->typeA;
147 vdwgridparam = fr->ljpme_c6grid;
148 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
149 ewclj = _mm_set1_ps(fr->ic->ewaldcoeff_lj);
150 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
152 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
153 ewtab = fr->ic->tabq_coul_FDV0;
154 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
155 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
157 /* Setup water-specific parameters */
158 inr = nlist->iinr[0];
159 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
160 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
161 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
162 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
164 jq0 = _mm_set1_ps(charge[inr+0]);
165 jq1 = _mm_set1_ps(charge[inr+1]);
166 jq2 = _mm_set1_ps(charge[inr+2]);
167 vdwjidx0A = 2*vdwtype[inr+0];
168 qq00 = _mm_mul_ps(iq0,jq0);
169 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
170 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
171 c6grid_00 = _mm_set1_ps(vdwgridparam[vdwioffset0+vdwjidx0A]);
172 qq01 = _mm_mul_ps(iq0,jq1);
173 qq02 = _mm_mul_ps(iq0,jq2);
174 qq10 = _mm_mul_ps(iq1,jq0);
175 qq11 = _mm_mul_ps(iq1,jq1);
176 qq12 = _mm_mul_ps(iq1,jq2);
177 qq20 = _mm_mul_ps(iq2,jq0);
178 qq21 = _mm_mul_ps(iq2,jq1);
179 qq22 = _mm_mul_ps(iq2,jq2);
181 /* Avoid stupid compiler warnings */
182 jnrA = jnrB = jnrC = jnrD = 0;
191 for(iidx=0;iidx<4*DIM;iidx++)
196 /* Start outer loop over neighborlists */
197 for(iidx=0; iidx<nri; iidx++)
199 /* Load shift vector for this list */
200 i_shift_offset = DIM*shiftidx[iidx];
202 /* Load limits for loop over neighbors */
203 j_index_start = jindex[iidx];
204 j_index_end = jindex[iidx+1];
206 /* Get outer coordinate index */
208 i_coord_offset = DIM*inr;
210 /* Load i particle coords and add shift vector */
211 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
212 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
214 fix0 = _mm_setzero_ps();
215 fiy0 = _mm_setzero_ps();
216 fiz0 = _mm_setzero_ps();
217 fix1 = _mm_setzero_ps();
218 fiy1 = _mm_setzero_ps();
219 fiz1 = _mm_setzero_ps();
220 fix2 = _mm_setzero_ps();
221 fiy2 = _mm_setzero_ps();
222 fiz2 = _mm_setzero_ps();
224 /* Reset potential sums */
225 velecsum = _mm_setzero_ps();
226 vvdwsum = _mm_setzero_ps();
228 /* Start inner kernel loop */
229 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
232 /* Get j neighbor index, and coordinate index */
237 j_coord_offsetA = DIM*jnrA;
238 j_coord_offsetB = DIM*jnrB;
239 j_coord_offsetC = DIM*jnrC;
240 j_coord_offsetD = DIM*jnrD;
242 /* load j atom coordinates */
243 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
244 x+j_coord_offsetC,x+j_coord_offsetD,
245 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
247 /* Calculate displacement vector */
248 dx00 = _mm_sub_ps(ix0,jx0);
249 dy00 = _mm_sub_ps(iy0,jy0);
250 dz00 = _mm_sub_ps(iz0,jz0);
251 dx01 = _mm_sub_ps(ix0,jx1);
252 dy01 = _mm_sub_ps(iy0,jy1);
253 dz01 = _mm_sub_ps(iz0,jz1);
254 dx02 = _mm_sub_ps(ix0,jx2);
255 dy02 = _mm_sub_ps(iy0,jy2);
256 dz02 = _mm_sub_ps(iz0,jz2);
257 dx10 = _mm_sub_ps(ix1,jx0);
258 dy10 = _mm_sub_ps(iy1,jy0);
259 dz10 = _mm_sub_ps(iz1,jz0);
260 dx11 = _mm_sub_ps(ix1,jx1);
261 dy11 = _mm_sub_ps(iy1,jy1);
262 dz11 = _mm_sub_ps(iz1,jz1);
263 dx12 = _mm_sub_ps(ix1,jx2);
264 dy12 = _mm_sub_ps(iy1,jy2);
265 dz12 = _mm_sub_ps(iz1,jz2);
266 dx20 = _mm_sub_ps(ix2,jx0);
267 dy20 = _mm_sub_ps(iy2,jy0);
268 dz20 = _mm_sub_ps(iz2,jz0);
269 dx21 = _mm_sub_ps(ix2,jx1);
270 dy21 = _mm_sub_ps(iy2,jy1);
271 dz21 = _mm_sub_ps(iz2,jz1);
272 dx22 = _mm_sub_ps(ix2,jx2);
273 dy22 = _mm_sub_ps(iy2,jy2);
274 dz22 = _mm_sub_ps(iz2,jz2);
276 /* Calculate squared distance and things based on it */
277 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
278 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
279 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
280 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
281 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
282 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
283 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
284 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
285 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
287 rinv00 = sse2_invsqrt_f(rsq00);
288 rinv01 = sse2_invsqrt_f(rsq01);
289 rinv02 = sse2_invsqrt_f(rsq02);
290 rinv10 = sse2_invsqrt_f(rsq10);
291 rinv11 = sse2_invsqrt_f(rsq11);
292 rinv12 = sse2_invsqrt_f(rsq12);
293 rinv20 = sse2_invsqrt_f(rsq20);
294 rinv21 = sse2_invsqrt_f(rsq21);
295 rinv22 = sse2_invsqrt_f(rsq22);
297 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
298 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
299 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
300 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
301 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
302 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
303 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
304 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
305 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
307 fjx0 = _mm_setzero_ps();
308 fjy0 = _mm_setzero_ps();
309 fjz0 = _mm_setzero_ps();
310 fjx1 = _mm_setzero_ps();
311 fjy1 = _mm_setzero_ps();
312 fjz1 = _mm_setzero_ps();
313 fjx2 = _mm_setzero_ps();
314 fjy2 = _mm_setzero_ps();
315 fjz2 = _mm_setzero_ps();
317 /**************************
318 * CALCULATE INTERACTIONS *
319 **************************/
321 r00 = _mm_mul_ps(rsq00,rinv00);
323 /* EWALD ELECTROSTATICS */
325 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
326 ewrt = _mm_mul_ps(r00,ewtabscale);
327 ewitab = _mm_cvttps_epi32(ewrt);
328 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
329 ewitab = _mm_slli_epi32(ewitab,2);
330 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
331 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
332 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
333 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
334 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
335 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
336 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
337 velec = _mm_mul_ps(qq00,_mm_sub_ps(rinv00,velec));
338 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
340 /* Analytical LJ-PME */
341 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
342 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
343 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
344 exponent = sse2_exp_f(ewcljrsq);
345 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
346 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
347 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
348 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
349 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
350 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
351 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
352 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
354 /* Update potential sum for this i atom from the interaction with this j atom. */
355 velecsum = _mm_add_ps(velecsum,velec);
356 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
358 fscal = _mm_add_ps(felec,fvdw);
360 /* Calculate temporary vectorial force */
361 tx = _mm_mul_ps(fscal,dx00);
362 ty = _mm_mul_ps(fscal,dy00);
363 tz = _mm_mul_ps(fscal,dz00);
365 /* Update vectorial force */
366 fix0 = _mm_add_ps(fix0,tx);
367 fiy0 = _mm_add_ps(fiy0,ty);
368 fiz0 = _mm_add_ps(fiz0,tz);
370 fjx0 = _mm_add_ps(fjx0,tx);
371 fjy0 = _mm_add_ps(fjy0,ty);
372 fjz0 = _mm_add_ps(fjz0,tz);
374 /**************************
375 * CALCULATE INTERACTIONS *
376 **************************/
378 r01 = _mm_mul_ps(rsq01,rinv01);
380 /* EWALD ELECTROSTATICS */
382 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
383 ewrt = _mm_mul_ps(r01,ewtabscale);
384 ewitab = _mm_cvttps_epi32(ewrt);
385 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
386 ewitab = _mm_slli_epi32(ewitab,2);
387 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
388 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
389 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
390 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
391 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
392 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
393 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
394 velec = _mm_mul_ps(qq01,_mm_sub_ps(rinv01,velec));
395 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
397 /* Update potential sum for this i atom from the interaction with this j atom. */
398 velecsum = _mm_add_ps(velecsum,velec);
402 /* Calculate temporary vectorial force */
403 tx = _mm_mul_ps(fscal,dx01);
404 ty = _mm_mul_ps(fscal,dy01);
405 tz = _mm_mul_ps(fscal,dz01);
407 /* Update vectorial force */
408 fix0 = _mm_add_ps(fix0,tx);
409 fiy0 = _mm_add_ps(fiy0,ty);
410 fiz0 = _mm_add_ps(fiz0,tz);
412 fjx1 = _mm_add_ps(fjx1,tx);
413 fjy1 = _mm_add_ps(fjy1,ty);
414 fjz1 = _mm_add_ps(fjz1,tz);
416 /**************************
417 * CALCULATE INTERACTIONS *
418 **************************/
420 r02 = _mm_mul_ps(rsq02,rinv02);
422 /* EWALD ELECTROSTATICS */
424 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
425 ewrt = _mm_mul_ps(r02,ewtabscale);
426 ewitab = _mm_cvttps_epi32(ewrt);
427 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
428 ewitab = _mm_slli_epi32(ewitab,2);
429 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
430 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
431 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
432 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
433 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
434 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
435 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
436 velec = _mm_mul_ps(qq02,_mm_sub_ps(rinv02,velec));
437 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
439 /* Update potential sum for this i atom from the interaction with this j atom. */
440 velecsum = _mm_add_ps(velecsum,velec);
444 /* Calculate temporary vectorial force */
445 tx = _mm_mul_ps(fscal,dx02);
446 ty = _mm_mul_ps(fscal,dy02);
447 tz = _mm_mul_ps(fscal,dz02);
449 /* Update vectorial force */
450 fix0 = _mm_add_ps(fix0,tx);
451 fiy0 = _mm_add_ps(fiy0,ty);
452 fiz0 = _mm_add_ps(fiz0,tz);
454 fjx2 = _mm_add_ps(fjx2,tx);
455 fjy2 = _mm_add_ps(fjy2,ty);
456 fjz2 = _mm_add_ps(fjz2,tz);
458 /**************************
459 * CALCULATE INTERACTIONS *
460 **************************/
462 r10 = _mm_mul_ps(rsq10,rinv10);
464 /* EWALD ELECTROSTATICS */
466 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
467 ewrt = _mm_mul_ps(r10,ewtabscale);
468 ewitab = _mm_cvttps_epi32(ewrt);
469 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
470 ewitab = _mm_slli_epi32(ewitab,2);
471 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
472 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
473 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
474 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
475 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
476 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
477 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
478 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
479 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
481 /* Update potential sum for this i atom from the interaction with this j atom. */
482 velecsum = _mm_add_ps(velecsum,velec);
486 /* Calculate temporary vectorial force */
487 tx = _mm_mul_ps(fscal,dx10);
488 ty = _mm_mul_ps(fscal,dy10);
489 tz = _mm_mul_ps(fscal,dz10);
491 /* Update vectorial force */
492 fix1 = _mm_add_ps(fix1,tx);
493 fiy1 = _mm_add_ps(fiy1,ty);
494 fiz1 = _mm_add_ps(fiz1,tz);
496 fjx0 = _mm_add_ps(fjx0,tx);
497 fjy0 = _mm_add_ps(fjy0,ty);
498 fjz0 = _mm_add_ps(fjz0,tz);
500 /**************************
501 * CALCULATE INTERACTIONS *
502 **************************/
504 r11 = _mm_mul_ps(rsq11,rinv11);
506 /* EWALD ELECTROSTATICS */
508 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
509 ewrt = _mm_mul_ps(r11,ewtabscale);
510 ewitab = _mm_cvttps_epi32(ewrt);
511 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
512 ewitab = _mm_slli_epi32(ewitab,2);
513 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
514 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
515 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
516 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
517 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
518 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
519 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
520 velec = _mm_mul_ps(qq11,_mm_sub_ps(rinv11,velec));
521 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
523 /* Update potential sum for this i atom from the interaction with this j atom. */
524 velecsum = _mm_add_ps(velecsum,velec);
528 /* Calculate temporary vectorial force */
529 tx = _mm_mul_ps(fscal,dx11);
530 ty = _mm_mul_ps(fscal,dy11);
531 tz = _mm_mul_ps(fscal,dz11);
533 /* Update vectorial force */
534 fix1 = _mm_add_ps(fix1,tx);
535 fiy1 = _mm_add_ps(fiy1,ty);
536 fiz1 = _mm_add_ps(fiz1,tz);
538 fjx1 = _mm_add_ps(fjx1,tx);
539 fjy1 = _mm_add_ps(fjy1,ty);
540 fjz1 = _mm_add_ps(fjz1,tz);
542 /**************************
543 * CALCULATE INTERACTIONS *
544 **************************/
546 r12 = _mm_mul_ps(rsq12,rinv12);
548 /* EWALD ELECTROSTATICS */
550 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
551 ewrt = _mm_mul_ps(r12,ewtabscale);
552 ewitab = _mm_cvttps_epi32(ewrt);
553 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
554 ewitab = _mm_slli_epi32(ewitab,2);
555 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
556 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
557 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
558 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
559 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
560 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
561 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
562 velec = _mm_mul_ps(qq12,_mm_sub_ps(rinv12,velec));
563 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
565 /* Update potential sum for this i atom from the interaction with this j atom. */
566 velecsum = _mm_add_ps(velecsum,velec);
570 /* Calculate temporary vectorial force */
571 tx = _mm_mul_ps(fscal,dx12);
572 ty = _mm_mul_ps(fscal,dy12);
573 tz = _mm_mul_ps(fscal,dz12);
575 /* Update vectorial force */
576 fix1 = _mm_add_ps(fix1,tx);
577 fiy1 = _mm_add_ps(fiy1,ty);
578 fiz1 = _mm_add_ps(fiz1,tz);
580 fjx2 = _mm_add_ps(fjx2,tx);
581 fjy2 = _mm_add_ps(fjy2,ty);
582 fjz2 = _mm_add_ps(fjz2,tz);
584 /**************************
585 * CALCULATE INTERACTIONS *
586 **************************/
588 r20 = _mm_mul_ps(rsq20,rinv20);
590 /* EWALD ELECTROSTATICS */
592 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
593 ewrt = _mm_mul_ps(r20,ewtabscale);
594 ewitab = _mm_cvttps_epi32(ewrt);
595 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
596 ewitab = _mm_slli_epi32(ewitab,2);
597 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
598 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
599 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
600 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
601 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
602 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
603 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
604 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
605 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
607 /* Update potential sum for this i atom from the interaction with this j atom. */
608 velecsum = _mm_add_ps(velecsum,velec);
612 /* Calculate temporary vectorial force */
613 tx = _mm_mul_ps(fscal,dx20);
614 ty = _mm_mul_ps(fscal,dy20);
615 tz = _mm_mul_ps(fscal,dz20);
617 /* Update vectorial force */
618 fix2 = _mm_add_ps(fix2,tx);
619 fiy2 = _mm_add_ps(fiy2,ty);
620 fiz2 = _mm_add_ps(fiz2,tz);
622 fjx0 = _mm_add_ps(fjx0,tx);
623 fjy0 = _mm_add_ps(fjy0,ty);
624 fjz0 = _mm_add_ps(fjz0,tz);
626 /**************************
627 * CALCULATE INTERACTIONS *
628 **************************/
630 r21 = _mm_mul_ps(rsq21,rinv21);
632 /* EWALD ELECTROSTATICS */
634 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
635 ewrt = _mm_mul_ps(r21,ewtabscale);
636 ewitab = _mm_cvttps_epi32(ewrt);
637 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
638 ewitab = _mm_slli_epi32(ewitab,2);
639 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
640 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
641 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
642 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
643 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
644 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
645 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
646 velec = _mm_mul_ps(qq21,_mm_sub_ps(rinv21,velec));
647 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
649 /* Update potential sum for this i atom from the interaction with this j atom. */
650 velecsum = _mm_add_ps(velecsum,velec);
654 /* Calculate temporary vectorial force */
655 tx = _mm_mul_ps(fscal,dx21);
656 ty = _mm_mul_ps(fscal,dy21);
657 tz = _mm_mul_ps(fscal,dz21);
659 /* Update vectorial force */
660 fix2 = _mm_add_ps(fix2,tx);
661 fiy2 = _mm_add_ps(fiy2,ty);
662 fiz2 = _mm_add_ps(fiz2,tz);
664 fjx1 = _mm_add_ps(fjx1,tx);
665 fjy1 = _mm_add_ps(fjy1,ty);
666 fjz1 = _mm_add_ps(fjz1,tz);
668 /**************************
669 * CALCULATE INTERACTIONS *
670 **************************/
672 r22 = _mm_mul_ps(rsq22,rinv22);
674 /* EWALD ELECTROSTATICS */
676 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
677 ewrt = _mm_mul_ps(r22,ewtabscale);
678 ewitab = _mm_cvttps_epi32(ewrt);
679 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
680 ewitab = _mm_slli_epi32(ewitab,2);
681 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
682 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
683 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
684 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
685 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
686 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
687 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
688 velec = _mm_mul_ps(qq22,_mm_sub_ps(rinv22,velec));
689 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
691 /* Update potential sum for this i atom from the interaction with this j atom. */
692 velecsum = _mm_add_ps(velecsum,velec);
696 /* Calculate temporary vectorial force */
697 tx = _mm_mul_ps(fscal,dx22);
698 ty = _mm_mul_ps(fscal,dy22);
699 tz = _mm_mul_ps(fscal,dz22);
701 /* Update vectorial force */
702 fix2 = _mm_add_ps(fix2,tx);
703 fiy2 = _mm_add_ps(fiy2,ty);
704 fiz2 = _mm_add_ps(fiz2,tz);
706 fjx2 = _mm_add_ps(fjx2,tx);
707 fjy2 = _mm_add_ps(fjy2,ty);
708 fjz2 = _mm_add_ps(fjz2,tz);
710 fjptrA = f+j_coord_offsetA;
711 fjptrB = f+j_coord_offsetB;
712 fjptrC = f+j_coord_offsetC;
713 fjptrD = f+j_coord_offsetD;
715 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
716 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
718 /* Inner loop uses 397 flops */
724 /* Get j neighbor index, and coordinate index */
725 jnrlistA = jjnr[jidx];
726 jnrlistB = jjnr[jidx+1];
727 jnrlistC = jjnr[jidx+2];
728 jnrlistD = jjnr[jidx+3];
729 /* Sign of each element will be negative for non-real atoms.
730 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
731 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
733 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
734 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
735 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
736 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
737 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
738 j_coord_offsetA = DIM*jnrA;
739 j_coord_offsetB = DIM*jnrB;
740 j_coord_offsetC = DIM*jnrC;
741 j_coord_offsetD = DIM*jnrD;
743 /* load j atom coordinates */
744 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
745 x+j_coord_offsetC,x+j_coord_offsetD,
746 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
748 /* Calculate displacement vector */
749 dx00 = _mm_sub_ps(ix0,jx0);
750 dy00 = _mm_sub_ps(iy0,jy0);
751 dz00 = _mm_sub_ps(iz0,jz0);
752 dx01 = _mm_sub_ps(ix0,jx1);
753 dy01 = _mm_sub_ps(iy0,jy1);
754 dz01 = _mm_sub_ps(iz0,jz1);
755 dx02 = _mm_sub_ps(ix0,jx2);
756 dy02 = _mm_sub_ps(iy0,jy2);
757 dz02 = _mm_sub_ps(iz0,jz2);
758 dx10 = _mm_sub_ps(ix1,jx0);
759 dy10 = _mm_sub_ps(iy1,jy0);
760 dz10 = _mm_sub_ps(iz1,jz0);
761 dx11 = _mm_sub_ps(ix1,jx1);
762 dy11 = _mm_sub_ps(iy1,jy1);
763 dz11 = _mm_sub_ps(iz1,jz1);
764 dx12 = _mm_sub_ps(ix1,jx2);
765 dy12 = _mm_sub_ps(iy1,jy2);
766 dz12 = _mm_sub_ps(iz1,jz2);
767 dx20 = _mm_sub_ps(ix2,jx0);
768 dy20 = _mm_sub_ps(iy2,jy0);
769 dz20 = _mm_sub_ps(iz2,jz0);
770 dx21 = _mm_sub_ps(ix2,jx1);
771 dy21 = _mm_sub_ps(iy2,jy1);
772 dz21 = _mm_sub_ps(iz2,jz1);
773 dx22 = _mm_sub_ps(ix2,jx2);
774 dy22 = _mm_sub_ps(iy2,jy2);
775 dz22 = _mm_sub_ps(iz2,jz2);
777 /* Calculate squared distance and things based on it */
778 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
779 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
780 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
781 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
782 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
783 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
784 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
785 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
786 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
788 rinv00 = sse2_invsqrt_f(rsq00);
789 rinv01 = sse2_invsqrt_f(rsq01);
790 rinv02 = sse2_invsqrt_f(rsq02);
791 rinv10 = sse2_invsqrt_f(rsq10);
792 rinv11 = sse2_invsqrt_f(rsq11);
793 rinv12 = sse2_invsqrt_f(rsq12);
794 rinv20 = sse2_invsqrt_f(rsq20);
795 rinv21 = sse2_invsqrt_f(rsq21);
796 rinv22 = sse2_invsqrt_f(rsq22);
798 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
799 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
800 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
801 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
802 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
803 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
804 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
805 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
806 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
808 fjx0 = _mm_setzero_ps();
809 fjy0 = _mm_setzero_ps();
810 fjz0 = _mm_setzero_ps();
811 fjx1 = _mm_setzero_ps();
812 fjy1 = _mm_setzero_ps();
813 fjz1 = _mm_setzero_ps();
814 fjx2 = _mm_setzero_ps();
815 fjy2 = _mm_setzero_ps();
816 fjz2 = _mm_setzero_ps();
818 /**************************
819 * CALCULATE INTERACTIONS *
820 **************************/
822 r00 = _mm_mul_ps(rsq00,rinv00);
823 r00 = _mm_andnot_ps(dummy_mask,r00);
825 /* EWALD ELECTROSTATICS */
827 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
828 ewrt = _mm_mul_ps(r00,ewtabscale);
829 ewitab = _mm_cvttps_epi32(ewrt);
830 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
831 ewitab = _mm_slli_epi32(ewitab,2);
832 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
833 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
834 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
835 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
836 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
837 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
838 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
839 velec = _mm_mul_ps(qq00,_mm_sub_ps(rinv00,velec));
840 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
842 /* Analytical LJ-PME */
843 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
844 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
845 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
846 exponent = sse2_exp_f(ewcljrsq);
847 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
848 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
849 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
850 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
851 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
852 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
853 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
854 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
856 /* Update potential sum for this i atom from the interaction with this j atom. */
857 velec = _mm_andnot_ps(dummy_mask,velec);
858 velecsum = _mm_add_ps(velecsum,velec);
859 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
860 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
862 fscal = _mm_add_ps(felec,fvdw);
864 fscal = _mm_andnot_ps(dummy_mask,fscal);
866 /* Calculate temporary vectorial force */
867 tx = _mm_mul_ps(fscal,dx00);
868 ty = _mm_mul_ps(fscal,dy00);
869 tz = _mm_mul_ps(fscal,dz00);
871 /* Update vectorial force */
872 fix0 = _mm_add_ps(fix0,tx);
873 fiy0 = _mm_add_ps(fiy0,ty);
874 fiz0 = _mm_add_ps(fiz0,tz);
876 fjx0 = _mm_add_ps(fjx0,tx);
877 fjy0 = _mm_add_ps(fjy0,ty);
878 fjz0 = _mm_add_ps(fjz0,tz);
880 /**************************
881 * CALCULATE INTERACTIONS *
882 **************************/
884 r01 = _mm_mul_ps(rsq01,rinv01);
885 r01 = _mm_andnot_ps(dummy_mask,r01);
887 /* EWALD ELECTROSTATICS */
889 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
890 ewrt = _mm_mul_ps(r01,ewtabscale);
891 ewitab = _mm_cvttps_epi32(ewrt);
892 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
893 ewitab = _mm_slli_epi32(ewitab,2);
894 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
895 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
896 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
897 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
898 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
899 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
900 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
901 velec = _mm_mul_ps(qq01,_mm_sub_ps(rinv01,velec));
902 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
904 /* Update potential sum for this i atom from the interaction with this j atom. */
905 velec = _mm_andnot_ps(dummy_mask,velec);
906 velecsum = _mm_add_ps(velecsum,velec);
910 fscal = _mm_andnot_ps(dummy_mask,fscal);
912 /* Calculate temporary vectorial force */
913 tx = _mm_mul_ps(fscal,dx01);
914 ty = _mm_mul_ps(fscal,dy01);
915 tz = _mm_mul_ps(fscal,dz01);
917 /* Update vectorial force */
918 fix0 = _mm_add_ps(fix0,tx);
919 fiy0 = _mm_add_ps(fiy0,ty);
920 fiz0 = _mm_add_ps(fiz0,tz);
922 fjx1 = _mm_add_ps(fjx1,tx);
923 fjy1 = _mm_add_ps(fjy1,ty);
924 fjz1 = _mm_add_ps(fjz1,tz);
926 /**************************
927 * CALCULATE INTERACTIONS *
928 **************************/
930 r02 = _mm_mul_ps(rsq02,rinv02);
931 r02 = _mm_andnot_ps(dummy_mask,r02);
933 /* EWALD ELECTROSTATICS */
935 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
936 ewrt = _mm_mul_ps(r02,ewtabscale);
937 ewitab = _mm_cvttps_epi32(ewrt);
938 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
939 ewitab = _mm_slli_epi32(ewitab,2);
940 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
941 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
942 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
943 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
944 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
945 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
946 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
947 velec = _mm_mul_ps(qq02,_mm_sub_ps(rinv02,velec));
948 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
950 /* Update potential sum for this i atom from the interaction with this j atom. */
951 velec = _mm_andnot_ps(dummy_mask,velec);
952 velecsum = _mm_add_ps(velecsum,velec);
956 fscal = _mm_andnot_ps(dummy_mask,fscal);
958 /* Calculate temporary vectorial force */
959 tx = _mm_mul_ps(fscal,dx02);
960 ty = _mm_mul_ps(fscal,dy02);
961 tz = _mm_mul_ps(fscal,dz02);
963 /* Update vectorial force */
964 fix0 = _mm_add_ps(fix0,tx);
965 fiy0 = _mm_add_ps(fiy0,ty);
966 fiz0 = _mm_add_ps(fiz0,tz);
968 fjx2 = _mm_add_ps(fjx2,tx);
969 fjy2 = _mm_add_ps(fjy2,ty);
970 fjz2 = _mm_add_ps(fjz2,tz);
972 /**************************
973 * CALCULATE INTERACTIONS *
974 **************************/
976 r10 = _mm_mul_ps(rsq10,rinv10);
977 r10 = _mm_andnot_ps(dummy_mask,r10);
979 /* EWALD ELECTROSTATICS */
981 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
982 ewrt = _mm_mul_ps(r10,ewtabscale);
983 ewitab = _mm_cvttps_epi32(ewrt);
984 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
985 ewitab = _mm_slli_epi32(ewitab,2);
986 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
987 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
988 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
989 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
990 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
991 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
992 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
993 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
994 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
996 /* Update potential sum for this i atom from the interaction with this j atom. */
997 velec = _mm_andnot_ps(dummy_mask,velec);
998 velecsum = _mm_add_ps(velecsum,velec);
1002 fscal = _mm_andnot_ps(dummy_mask,fscal);
1004 /* Calculate temporary vectorial force */
1005 tx = _mm_mul_ps(fscal,dx10);
1006 ty = _mm_mul_ps(fscal,dy10);
1007 tz = _mm_mul_ps(fscal,dz10);
1009 /* Update vectorial force */
1010 fix1 = _mm_add_ps(fix1,tx);
1011 fiy1 = _mm_add_ps(fiy1,ty);
1012 fiz1 = _mm_add_ps(fiz1,tz);
1014 fjx0 = _mm_add_ps(fjx0,tx);
1015 fjy0 = _mm_add_ps(fjy0,ty);
1016 fjz0 = _mm_add_ps(fjz0,tz);
1018 /**************************
1019 * CALCULATE INTERACTIONS *
1020 **************************/
1022 r11 = _mm_mul_ps(rsq11,rinv11);
1023 r11 = _mm_andnot_ps(dummy_mask,r11);
1025 /* EWALD ELECTROSTATICS */
1027 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1028 ewrt = _mm_mul_ps(r11,ewtabscale);
1029 ewitab = _mm_cvttps_epi32(ewrt);
1030 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1031 ewitab = _mm_slli_epi32(ewitab,2);
1032 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1033 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1034 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1035 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1036 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1037 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1038 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1039 velec = _mm_mul_ps(qq11,_mm_sub_ps(rinv11,velec));
1040 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
1042 /* Update potential sum for this i atom from the interaction with this j atom. */
1043 velec = _mm_andnot_ps(dummy_mask,velec);
1044 velecsum = _mm_add_ps(velecsum,velec);
1048 fscal = _mm_andnot_ps(dummy_mask,fscal);
1050 /* Calculate temporary vectorial force */
1051 tx = _mm_mul_ps(fscal,dx11);
1052 ty = _mm_mul_ps(fscal,dy11);
1053 tz = _mm_mul_ps(fscal,dz11);
1055 /* Update vectorial force */
1056 fix1 = _mm_add_ps(fix1,tx);
1057 fiy1 = _mm_add_ps(fiy1,ty);
1058 fiz1 = _mm_add_ps(fiz1,tz);
1060 fjx1 = _mm_add_ps(fjx1,tx);
1061 fjy1 = _mm_add_ps(fjy1,ty);
1062 fjz1 = _mm_add_ps(fjz1,tz);
1064 /**************************
1065 * CALCULATE INTERACTIONS *
1066 **************************/
1068 r12 = _mm_mul_ps(rsq12,rinv12);
1069 r12 = _mm_andnot_ps(dummy_mask,r12);
1071 /* EWALD ELECTROSTATICS */
1073 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1074 ewrt = _mm_mul_ps(r12,ewtabscale);
1075 ewitab = _mm_cvttps_epi32(ewrt);
1076 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1077 ewitab = _mm_slli_epi32(ewitab,2);
1078 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1079 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1080 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1081 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1082 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1083 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1084 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1085 velec = _mm_mul_ps(qq12,_mm_sub_ps(rinv12,velec));
1086 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
1088 /* Update potential sum for this i atom from the interaction with this j atom. */
1089 velec = _mm_andnot_ps(dummy_mask,velec);
1090 velecsum = _mm_add_ps(velecsum,velec);
1094 fscal = _mm_andnot_ps(dummy_mask,fscal);
1096 /* Calculate temporary vectorial force */
1097 tx = _mm_mul_ps(fscal,dx12);
1098 ty = _mm_mul_ps(fscal,dy12);
1099 tz = _mm_mul_ps(fscal,dz12);
1101 /* Update vectorial force */
1102 fix1 = _mm_add_ps(fix1,tx);
1103 fiy1 = _mm_add_ps(fiy1,ty);
1104 fiz1 = _mm_add_ps(fiz1,tz);
1106 fjx2 = _mm_add_ps(fjx2,tx);
1107 fjy2 = _mm_add_ps(fjy2,ty);
1108 fjz2 = _mm_add_ps(fjz2,tz);
1110 /**************************
1111 * CALCULATE INTERACTIONS *
1112 **************************/
1114 r20 = _mm_mul_ps(rsq20,rinv20);
1115 r20 = _mm_andnot_ps(dummy_mask,r20);
1117 /* EWALD ELECTROSTATICS */
1119 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1120 ewrt = _mm_mul_ps(r20,ewtabscale);
1121 ewitab = _mm_cvttps_epi32(ewrt);
1122 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1123 ewitab = _mm_slli_epi32(ewitab,2);
1124 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1125 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1126 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1127 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1128 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1129 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1130 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1131 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
1132 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1134 /* Update potential sum for this i atom from the interaction with this j atom. */
1135 velec = _mm_andnot_ps(dummy_mask,velec);
1136 velecsum = _mm_add_ps(velecsum,velec);
1140 fscal = _mm_andnot_ps(dummy_mask,fscal);
1142 /* Calculate temporary vectorial force */
1143 tx = _mm_mul_ps(fscal,dx20);
1144 ty = _mm_mul_ps(fscal,dy20);
1145 tz = _mm_mul_ps(fscal,dz20);
1147 /* Update vectorial force */
1148 fix2 = _mm_add_ps(fix2,tx);
1149 fiy2 = _mm_add_ps(fiy2,ty);
1150 fiz2 = _mm_add_ps(fiz2,tz);
1152 fjx0 = _mm_add_ps(fjx0,tx);
1153 fjy0 = _mm_add_ps(fjy0,ty);
1154 fjz0 = _mm_add_ps(fjz0,tz);
1156 /**************************
1157 * CALCULATE INTERACTIONS *
1158 **************************/
1160 r21 = _mm_mul_ps(rsq21,rinv21);
1161 r21 = _mm_andnot_ps(dummy_mask,r21);
1163 /* EWALD ELECTROSTATICS */
1165 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1166 ewrt = _mm_mul_ps(r21,ewtabscale);
1167 ewitab = _mm_cvttps_epi32(ewrt);
1168 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1169 ewitab = _mm_slli_epi32(ewitab,2);
1170 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1171 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1172 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1173 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1174 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1175 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1176 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1177 velec = _mm_mul_ps(qq21,_mm_sub_ps(rinv21,velec));
1178 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
1180 /* Update potential sum for this i atom from the interaction with this j atom. */
1181 velec = _mm_andnot_ps(dummy_mask,velec);
1182 velecsum = _mm_add_ps(velecsum,velec);
1186 fscal = _mm_andnot_ps(dummy_mask,fscal);
1188 /* Calculate temporary vectorial force */
1189 tx = _mm_mul_ps(fscal,dx21);
1190 ty = _mm_mul_ps(fscal,dy21);
1191 tz = _mm_mul_ps(fscal,dz21);
1193 /* Update vectorial force */
1194 fix2 = _mm_add_ps(fix2,tx);
1195 fiy2 = _mm_add_ps(fiy2,ty);
1196 fiz2 = _mm_add_ps(fiz2,tz);
1198 fjx1 = _mm_add_ps(fjx1,tx);
1199 fjy1 = _mm_add_ps(fjy1,ty);
1200 fjz1 = _mm_add_ps(fjz1,tz);
1202 /**************************
1203 * CALCULATE INTERACTIONS *
1204 **************************/
1206 r22 = _mm_mul_ps(rsq22,rinv22);
1207 r22 = _mm_andnot_ps(dummy_mask,r22);
1209 /* EWALD ELECTROSTATICS */
1211 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1212 ewrt = _mm_mul_ps(r22,ewtabscale);
1213 ewitab = _mm_cvttps_epi32(ewrt);
1214 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1215 ewitab = _mm_slli_epi32(ewitab,2);
1216 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1217 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1218 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1219 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1220 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1221 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1222 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1223 velec = _mm_mul_ps(qq22,_mm_sub_ps(rinv22,velec));
1224 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
1226 /* Update potential sum for this i atom from the interaction with this j atom. */
1227 velec = _mm_andnot_ps(dummy_mask,velec);
1228 velecsum = _mm_add_ps(velecsum,velec);
1232 fscal = _mm_andnot_ps(dummy_mask,fscal);
1234 /* Calculate temporary vectorial force */
1235 tx = _mm_mul_ps(fscal,dx22);
1236 ty = _mm_mul_ps(fscal,dy22);
1237 tz = _mm_mul_ps(fscal,dz22);
1239 /* Update vectorial force */
1240 fix2 = _mm_add_ps(fix2,tx);
1241 fiy2 = _mm_add_ps(fiy2,ty);
1242 fiz2 = _mm_add_ps(fiz2,tz);
1244 fjx2 = _mm_add_ps(fjx2,tx);
1245 fjy2 = _mm_add_ps(fjy2,ty);
1246 fjz2 = _mm_add_ps(fjz2,tz);
1248 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1249 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1250 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1251 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1253 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1254 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1256 /* Inner loop uses 406 flops */
1259 /* End of innermost loop */
1261 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1262 f+i_coord_offset,fshift+i_shift_offset);
1265 /* Update potential energies */
1266 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1267 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1269 /* Increment number of inner iterations */
1270 inneriter += j_index_end - j_index_start;
1272 /* Outer loop uses 20 flops */
1275 /* Increment number of outer iterations */
1278 /* Update outer/inner flops */
1280 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*406);
1283 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_single
1284 * Electrostatics interaction: Ewald
1285 * VdW interaction: LJEwald
1286 * Geometry: Water3-Water3
1287 * Calculate force/pot: Force
1290 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_single
1291 (t_nblist * gmx_restrict nlist,
1292 rvec * gmx_restrict xx,
1293 rvec * gmx_restrict ff,
1294 struct t_forcerec * gmx_restrict fr,
1295 t_mdatoms * gmx_restrict mdatoms,
1296 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1297 t_nrnb * gmx_restrict nrnb)
1299 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1300 * just 0 for non-waters.
1301 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
1302 * jnr indices corresponding to data put in the four positions in the SIMD register.
1304 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1305 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1306 int jnrA,jnrB,jnrC,jnrD;
1307 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1308 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1309 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1310 real rcutoff_scalar;
1311 real *shiftvec,*fshift,*x,*f;
1312 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
1313 real scratch[4*DIM];
1314 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1316 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1318 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1320 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1321 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1322 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1323 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1324 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1325 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1326 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1327 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1328 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1329 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1330 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1331 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1332 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1333 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1334 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1335 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1336 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
1339 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1342 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
1343 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
1353 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
1355 __m128 one_half = _mm_set1_ps(0.5);
1356 __m128 minus_one = _mm_set1_ps(-1.0);
1358 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1360 __m128 dummy_mask,cutoff_mask;
1361 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
1362 __m128 one = _mm_set1_ps(1.0);
1363 __m128 two = _mm_set1_ps(2.0);
1369 jindex = nlist->jindex;
1371 shiftidx = nlist->shift;
1373 shiftvec = fr->shift_vec[0];
1374 fshift = fr->fshift[0];
1375 facel = _mm_set1_ps(fr->ic->epsfac);
1376 charge = mdatoms->chargeA;
1377 nvdwtype = fr->ntype;
1378 vdwparam = fr->nbfp;
1379 vdwtype = mdatoms->typeA;
1380 vdwgridparam = fr->ljpme_c6grid;
1381 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
1382 ewclj = _mm_set1_ps(fr->ic->ewaldcoeff_lj);
1383 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
1385 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
1386 ewtab = fr->ic->tabq_coul_F;
1387 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
1388 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
1390 /* Setup water-specific parameters */
1391 inr = nlist->iinr[0];
1392 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
1393 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
1394 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
1395 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1397 jq0 = _mm_set1_ps(charge[inr+0]);
1398 jq1 = _mm_set1_ps(charge[inr+1]);
1399 jq2 = _mm_set1_ps(charge[inr+2]);
1400 vdwjidx0A = 2*vdwtype[inr+0];
1401 qq00 = _mm_mul_ps(iq0,jq0);
1402 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
1403 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
1404 c6grid_00 = _mm_set1_ps(vdwgridparam[vdwioffset0+vdwjidx0A]);
1405 qq01 = _mm_mul_ps(iq0,jq1);
1406 qq02 = _mm_mul_ps(iq0,jq2);
1407 qq10 = _mm_mul_ps(iq1,jq0);
1408 qq11 = _mm_mul_ps(iq1,jq1);
1409 qq12 = _mm_mul_ps(iq1,jq2);
1410 qq20 = _mm_mul_ps(iq2,jq0);
1411 qq21 = _mm_mul_ps(iq2,jq1);
1412 qq22 = _mm_mul_ps(iq2,jq2);
1414 /* Avoid stupid compiler warnings */
1415 jnrA = jnrB = jnrC = jnrD = 0;
1416 j_coord_offsetA = 0;
1417 j_coord_offsetB = 0;
1418 j_coord_offsetC = 0;
1419 j_coord_offsetD = 0;
1424 for(iidx=0;iidx<4*DIM;iidx++)
1426 scratch[iidx] = 0.0;
1429 /* Start outer loop over neighborlists */
1430 for(iidx=0; iidx<nri; iidx++)
1432 /* Load shift vector for this list */
1433 i_shift_offset = DIM*shiftidx[iidx];
1435 /* Load limits for loop over neighbors */
1436 j_index_start = jindex[iidx];
1437 j_index_end = jindex[iidx+1];
1439 /* Get outer coordinate index */
1441 i_coord_offset = DIM*inr;
1443 /* Load i particle coords and add shift vector */
1444 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1445 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1447 fix0 = _mm_setzero_ps();
1448 fiy0 = _mm_setzero_ps();
1449 fiz0 = _mm_setzero_ps();
1450 fix1 = _mm_setzero_ps();
1451 fiy1 = _mm_setzero_ps();
1452 fiz1 = _mm_setzero_ps();
1453 fix2 = _mm_setzero_ps();
1454 fiy2 = _mm_setzero_ps();
1455 fiz2 = _mm_setzero_ps();
1457 /* Start inner kernel loop */
1458 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1461 /* Get j neighbor index, and coordinate index */
1463 jnrB = jjnr[jidx+1];
1464 jnrC = jjnr[jidx+2];
1465 jnrD = jjnr[jidx+3];
1466 j_coord_offsetA = DIM*jnrA;
1467 j_coord_offsetB = DIM*jnrB;
1468 j_coord_offsetC = DIM*jnrC;
1469 j_coord_offsetD = DIM*jnrD;
1471 /* load j atom coordinates */
1472 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1473 x+j_coord_offsetC,x+j_coord_offsetD,
1474 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1476 /* Calculate displacement vector */
1477 dx00 = _mm_sub_ps(ix0,jx0);
1478 dy00 = _mm_sub_ps(iy0,jy0);
1479 dz00 = _mm_sub_ps(iz0,jz0);
1480 dx01 = _mm_sub_ps(ix0,jx1);
1481 dy01 = _mm_sub_ps(iy0,jy1);
1482 dz01 = _mm_sub_ps(iz0,jz1);
1483 dx02 = _mm_sub_ps(ix0,jx2);
1484 dy02 = _mm_sub_ps(iy0,jy2);
1485 dz02 = _mm_sub_ps(iz0,jz2);
1486 dx10 = _mm_sub_ps(ix1,jx0);
1487 dy10 = _mm_sub_ps(iy1,jy0);
1488 dz10 = _mm_sub_ps(iz1,jz0);
1489 dx11 = _mm_sub_ps(ix1,jx1);
1490 dy11 = _mm_sub_ps(iy1,jy1);
1491 dz11 = _mm_sub_ps(iz1,jz1);
1492 dx12 = _mm_sub_ps(ix1,jx2);
1493 dy12 = _mm_sub_ps(iy1,jy2);
1494 dz12 = _mm_sub_ps(iz1,jz2);
1495 dx20 = _mm_sub_ps(ix2,jx0);
1496 dy20 = _mm_sub_ps(iy2,jy0);
1497 dz20 = _mm_sub_ps(iz2,jz0);
1498 dx21 = _mm_sub_ps(ix2,jx1);
1499 dy21 = _mm_sub_ps(iy2,jy1);
1500 dz21 = _mm_sub_ps(iz2,jz1);
1501 dx22 = _mm_sub_ps(ix2,jx2);
1502 dy22 = _mm_sub_ps(iy2,jy2);
1503 dz22 = _mm_sub_ps(iz2,jz2);
1505 /* Calculate squared distance and things based on it */
1506 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1507 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1508 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1509 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1510 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1511 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1512 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1513 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1514 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1516 rinv00 = sse2_invsqrt_f(rsq00);
1517 rinv01 = sse2_invsqrt_f(rsq01);
1518 rinv02 = sse2_invsqrt_f(rsq02);
1519 rinv10 = sse2_invsqrt_f(rsq10);
1520 rinv11 = sse2_invsqrt_f(rsq11);
1521 rinv12 = sse2_invsqrt_f(rsq12);
1522 rinv20 = sse2_invsqrt_f(rsq20);
1523 rinv21 = sse2_invsqrt_f(rsq21);
1524 rinv22 = sse2_invsqrt_f(rsq22);
1526 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1527 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1528 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1529 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1530 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1531 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1532 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1533 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1534 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1536 fjx0 = _mm_setzero_ps();
1537 fjy0 = _mm_setzero_ps();
1538 fjz0 = _mm_setzero_ps();
1539 fjx1 = _mm_setzero_ps();
1540 fjy1 = _mm_setzero_ps();
1541 fjz1 = _mm_setzero_ps();
1542 fjx2 = _mm_setzero_ps();
1543 fjy2 = _mm_setzero_ps();
1544 fjz2 = _mm_setzero_ps();
1546 /**************************
1547 * CALCULATE INTERACTIONS *
1548 **************************/
1550 r00 = _mm_mul_ps(rsq00,rinv00);
1552 /* EWALD ELECTROSTATICS */
1554 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1555 ewrt = _mm_mul_ps(r00,ewtabscale);
1556 ewitab = _mm_cvttps_epi32(ewrt);
1557 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1558 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1559 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1561 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1562 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
1564 /* Analytical LJ-PME */
1565 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1566 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
1567 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
1568 exponent = sse2_exp_f(ewcljrsq);
1569 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1570 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
1571 /* f6A = 6 * C6grid * (1 - poly) */
1572 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
1573 /* f6B = C6grid * exponent * beta^6 */
1574 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
1575 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1576 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1578 fscal = _mm_add_ps(felec,fvdw);
1580 /* Calculate temporary vectorial force */
1581 tx = _mm_mul_ps(fscal,dx00);
1582 ty = _mm_mul_ps(fscal,dy00);
1583 tz = _mm_mul_ps(fscal,dz00);
1585 /* Update vectorial force */
1586 fix0 = _mm_add_ps(fix0,tx);
1587 fiy0 = _mm_add_ps(fiy0,ty);
1588 fiz0 = _mm_add_ps(fiz0,tz);
1590 fjx0 = _mm_add_ps(fjx0,tx);
1591 fjy0 = _mm_add_ps(fjy0,ty);
1592 fjz0 = _mm_add_ps(fjz0,tz);
1594 /**************************
1595 * CALCULATE INTERACTIONS *
1596 **************************/
1598 r01 = _mm_mul_ps(rsq01,rinv01);
1600 /* EWALD ELECTROSTATICS */
1602 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1603 ewrt = _mm_mul_ps(r01,ewtabscale);
1604 ewitab = _mm_cvttps_epi32(ewrt);
1605 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1606 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1607 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1609 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1610 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
1614 /* Calculate temporary vectorial force */
1615 tx = _mm_mul_ps(fscal,dx01);
1616 ty = _mm_mul_ps(fscal,dy01);
1617 tz = _mm_mul_ps(fscal,dz01);
1619 /* Update vectorial force */
1620 fix0 = _mm_add_ps(fix0,tx);
1621 fiy0 = _mm_add_ps(fiy0,ty);
1622 fiz0 = _mm_add_ps(fiz0,tz);
1624 fjx1 = _mm_add_ps(fjx1,tx);
1625 fjy1 = _mm_add_ps(fjy1,ty);
1626 fjz1 = _mm_add_ps(fjz1,tz);
1628 /**************************
1629 * CALCULATE INTERACTIONS *
1630 **************************/
1632 r02 = _mm_mul_ps(rsq02,rinv02);
1634 /* EWALD ELECTROSTATICS */
1636 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1637 ewrt = _mm_mul_ps(r02,ewtabscale);
1638 ewitab = _mm_cvttps_epi32(ewrt);
1639 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1640 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1641 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1643 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1644 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
1648 /* Calculate temporary vectorial force */
1649 tx = _mm_mul_ps(fscal,dx02);
1650 ty = _mm_mul_ps(fscal,dy02);
1651 tz = _mm_mul_ps(fscal,dz02);
1653 /* Update vectorial force */
1654 fix0 = _mm_add_ps(fix0,tx);
1655 fiy0 = _mm_add_ps(fiy0,ty);
1656 fiz0 = _mm_add_ps(fiz0,tz);
1658 fjx2 = _mm_add_ps(fjx2,tx);
1659 fjy2 = _mm_add_ps(fjy2,ty);
1660 fjz2 = _mm_add_ps(fjz2,tz);
1662 /**************************
1663 * CALCULATE INTERACTIONS *
1664 **************************/
1666 r10 = _mm_mul_ps(rsq10,rinv10);
1668 /* EWALD ELECTROSTATICS */
1670 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1671 ewrt = _mm_mul_ps(r10,ewtabscale);
1672 ewitab = _mm_cvttps_epi32(ewrt);
1673 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1674 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1675 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1677 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1678 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1682 /* Calculate temporary vectorial force */
1683 tx = _mm_mul_ps(fscal,dx10);
1684 ty = _mm_mul_ps(fscal,dy10);
1685 tz = _mm_mul_ps(fscal,dz10);
1687 /* Update vectorial force */
1688 fix1 = _mm_add_ps(fix1,tx);
1689 fiy1 = _mm_add_ps(fiy1,ty);
1690 fiz1 = _mm_add_ps(fiz1,tz);
1692 fjx0 = _mm_add_ps(fjx0,tx);
1693 fjy0 = _mm_add_ps(fjy0,ty);
1694 fjz0 = _mm_add_ps(fjz0,tz);
1696 /**************************
1697 * CALCULATE INTERACTIONS *
1698 **************************/
1700 r11 = _mm_mul_ps(rsq11,rinv11);
1702 /* EWALD ELECTROSTATICS */
1704 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1705 ewrt = _mm_mul_ps(r11,ewtabscale);
1706 ewitab = _mm_cvttps_epi32(ewrt);
1707 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1708 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1709 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1711 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1712 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
1716 /* Calculate temporary vectorial force */
1717 tx = _mm_mul_ps(fscal,dx11);
1718 ty = _mm_mul_ps(fscal,dy11);
1719 tz = _mm_mul_ps(fscal,dz11);
1721 /* Update vectorial force */
1722 fix1 = _mm_add_ps(fix1,tx);
1723 fiy1 = _mm_add_ps(fiy1,ty);
1724 fiz1 = _mm_add_ps(fiz1,tz);
1726 fjx1 = _mm_add_ps(fjx1,tx);
1727 fjy1 = _mm_add_ps(fjy1,ty);
1728 fjz1 = _mm_add_ps(fjz1,tz);
1730 /**************************
1731 * CALCULATE INTERACTIONS *
1732 **************************/
1734 r12 = _mm_mul_ps(rsq12,rinv12);
1736 /* EWALD ELECTROSTATICS */
1738 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1739 ewrt = _mm_mul_ps(r12,ewtabscale);
1740 ewitab = _mm_cvttps_epi32(ewrt);
1741 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1742 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1743 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1745 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1746 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
1750 /* Calculate temporary vectorial force */
1751 tx = _mm_mul_ps(fscal,dx12);
1752 ty = _mm_mul_ps(fscal,dy12);
1753 tz = _mm_mul_ps(fscal,dz12);
1755 /* Update vectorial force */
1756 fix1 = _mm_add_ps(fix1,tx);
1757 fiy1 = _mm_add_ps(fiy1,ty);
1758 fiz1 = _mm_add_ps(fiz1,tz);
1760 fjx2 = _mm_add_ps(fjx2,tx);
1761 fjy2 = _mm_add_ps(fjy2,ty);
1762 fjz2 = _mm_add_ps(fjz2,tz);
1764 /**************************
1765 * CALCULATE INTERACTIONS *
1766 **************************/
1768 r20 = _mm_mul_ps(rsq20,rinv20);
1770 /* EWALD ELECTROSTATICS */
1772 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1773 ewrt = _mm_mul_ps(r20,ewtabscale);
1774 ewitab = _mm_cvttps_epi32(ewrt);
1775 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1776 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1777 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1779 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1780 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1784 /* Calculate temporary vectorial force */
1785 tx = _mm_mul_ps(fscal,dx20);
1786 ty = _mm_mul_ps(fscal,dy20);
1787 tz = _mm_mul_ps(fscal,dz20);
1789 /* Update vectorial force */
1790 fix2 = _mm_add_ps(fix2,tx);
1791 fiy2 = _mm_add_ps(fiy2,ty);
1792 fiz2 = _mm_add_ps(fiz2,tz);
1794 fjx0 = _mm_add_ps(fjx0,tx);
1795 fjy0 = _mm_add_ps(fjy0,ty);
1796 fjz0 = _mm_add_ps(fjz0,tz);
1798 /**************************
1799 * CALCULATE INTERACTIONS *
1800 **************************/
1802 r21 = _mm_mul_ps(rsq21,rinv21);
1804 /* EWALD ELECTROSTATICS */
1806 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1807 ewrt = _mm_mul_ps(r21,ewtabscale);
1808 ewitab = _mm_cvttps_epi32(ewrt);
1809 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1810 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1811 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1813 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1814 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
1818 /* Calculate temporary vectorial force */
1819 tx = _mm_mul_ps(fscal,dx21);
1820 ty = _mm_mul_ps(fscal,dy21);
1821 tz = _mm_mul_ps(fscal,dz21);
1823 /* Update vectorial force */
1824 fix2 = _mm_add_ps(fix2,tx);
1825 fiy2 = _mm_add_ps(fiy2,ty);
1826 fiz2 = _mm_add_ps(fiz2,tz);
1828 fjx1 = _mm_add_ps(fjx1,tx);
1829 fjy1 = _mm_add_ps(fjy1,ty);
1830 fjz1 = _mm_add_ps(fjz1,tz);
1832 /**************************
1833 * CALCULATE INTERACTIONS *
1834 **************************/
1836 r22 = _mm_mul_ps(rsq22,rinv22);
1838 /* EWALD ELECTROSTATICS */
1840 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1841 ewrt = _mm_mul_ps(r22,ewtabscale);
1842 ewitab = _mm_cvttps_epi32(ewrt);
1843 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1844 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1845 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1847 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1848 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
1852 /* Calculate temporary vectorial force */
1853 tx = _mm_mul_ps(fscal,dx22);
1854 ty = _mm_mul_ps(fscal,dy22);
1855 tz = _mm_mul_ps(fscal,dz22);
1857 /* Update vectorial force */
1858 fix2 = _mm_add_ps(fix2,tx);
1859 fiy2 = _mm_add_ps(fiy2,ty);
1860 fiz2 = _mm_add_ps(fiz2,tz);
1862 fjx2 = _mm_add_ps(fjx2,tx);
1863 fjy2 = _mm_add_ps(fjy2,ty);
1864 fjz2 = _mm_add_ps(fjz2,tz);
1866 fjptrA = f+j_coord_offsetA;
1867 fjptrB = f+j_coord_offsetB;
1868 fjptrC = f+j_coord_offsetC;
1869 fjptrD = f+j_coord_offsetD;
1871 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1872 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1874 /* Inner loop uses 347 flops */
1877 if(jidx<j_index_end)
1880 /* Get j neighbor index, and coordinate index */
1881 jnrlistA = jjnr[jidx];
1882 jnrlistB = jjnr[jidx+1];
1883 jnrlistC = jjnr[jidx+2];
1884 jnrlistD = jjnr[jidx+3];
1885 /* Sign of each element will be negative for non-real atoms.
1886 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1887 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1889 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1890 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1891 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1892 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1893 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1894 j_coord_offsetA = DIM*jnrA;
1895 j_coord_offsetB = DIM*jnrB;
1896 j_coord_offsetC = DIM*jnrC;
1897 j_coord_offsetD = DIM*jnrD;
1899 /* load j atom coordinates */
1900 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1901 x+j_coord_offsetC,x+j_coord_offsetD,
1902 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1904 /* Calculate displacement vector */
1905 dx00 = _mm_sub_ps(ix0,jx0);
1906 dy00 = _mm_sub_ps(iy0,jy0);
1907 dz00 = _mm_sub_ps(iz0,jz0);
1908 dx01 = _mm_sub_ps(ix0,jx1);
1909 dy01 = _mm_sub_ps(iy0,jy1);
1910 dz01 = _mm_sub_ps(iz0,jz1);
1911 dx02 = _mm_sub_ps(ix0,jx2);
1912 dy02 = _mm_sub_ps(iy0,jy2);
1913 dz02 = _mm_sub_ps(iz0,jz2);
1914 dx10 = _mm_sub_ps(ix1,jx0);
1915 dy10 = _mm_sub_ps(iy1,jy0);
1916 dz10 = _mm_sub_ps(iz1,jz0);
1917 dx11 = _mm_sub_ps(ix1,jx1);
1918 dy11 = _mm_sub_ps(iy1,jy1);
1919 dz11 = _mm_sub_ps(iz1,jz1);
1920 dx12 = _mm_sub_ps(ix1,jx2);
1921 dy12 = _mm_sub_ps(iy1,jy2);
1922 dz12 = _mm_sub_ps(iz1,jz2);
1923 dx20 = _mm_sub_ps(ix2,jx0);
1924 dy20 = _mm_sub_ps(iy2,jy0);
1925 dz20 = _mm_sub_ps(iz2,jz0);
1926 dx21 = _mm_sub_ps(ix2,jx1);
1927 dy21 = _mm_sub_ps(iy2,jy1);
1928 dz21 = _mm_sub_ps(iz2,jz1);
1929 dx22 = _mm_sub_ps(ix2,jx2);
1930 dy22 = _mm_sub_ps(iy2,jy2);
1931 dz22 = _mm_sub_ps(iz2,jz2);
1933 /* Calculate squared distance and things based on it */
1934 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1935 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1936 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1937 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1938 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1939 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1940 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1941 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1942 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1944 rinv00 = sse2_invsqrt_f(rsq00);
1945 rinv01 = sse2_invsqrt_f(rsq01);
1946 rinv02 = sse2_invsqrt_f(rsq02);
1947 rinv10 = sse2_invsqrt_f(rsq10);
1948 rinv11 = sse2_invsqrt_f(rsq11);
1949 rinv12 = sse2_invsqrt_f(rsq12);
1950 rinv20 = sse2_invsqrt_f(rsq20);
1951 rinv21 = sse2_invsqrt_f(rsq21);
1952 rinv22 = sse2_invsqrt_f(rsq22);
1954 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1955 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1956 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1957 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1958 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1959 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1960 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1961 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1962 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1964 fjx0 = _mm_setzero_ps();
1965 fjy0 = _mm_setzero_ps();
1966 fjz0 = _mm_setzero_ps();
1967 fjx1 = _mm_setzero_ps();
1968 fjy1 = _mm_setzero_ps();
1969 fjz1 = _mm_setzero_ps();
1970 fjx2 = _mm_setzero_ps();
1971 fjy2 = _mm_setzero_ps();
1972 fjz2 = _mm_setzero_ps();
1974 /**************************
1975 * CALCULATE INTERACTIONS *
1976 **************************/
1978 r00 = _mm_mul_ps(rsq00,rinv00);
1979 r00 = _mm_andnot_ps(dummy_mask,r00);
1981 /* EWALD ELECTROSTATICS */
1983 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1984 ewrt = _mm_mul_ps(r00,ewtabscale);
1985 ewitab = _mm_cvttps_epi32(ewrt);
1986 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1987 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1988 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1990 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1991 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
1993 /* Analytical LJ-PME */
1994 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1995 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
1996 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
1997 exponent = sse2_exp_f(ewcljrsq);
1998 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1999 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
2000 /* f6A = 6 * C6grid * (1 - poly) */
2001 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
2002 /* f6B = C6grid * exponent * beta^6 */
2003 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
2004 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
2005 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
2007 fscal = _mm_add_ps(felec,fvdw);
2009 fscal = _mm_andnot_ps(dummy_mask,fscal);
2011 /* Calculate temporary vectorial force */
2012 tx = _mm_mul_ps(fscal,dx00);
2013 ty = _mm_mul_ps(fscal,dy00);
2014 tz = _mm_mul_ps(fscal,dz00);
2016 /* Update vectorial force */
2017 fix0 = _mm_add_ps(fix0,tx);
2018 fiy0 = _mm_add_ps(fiy0,ty);
2019 fiz0 = _mm_add_ps(fiz0,tz);
2021 fjx0 = _mm_add_ps(fjx0,tx);
2022 fjy0 = _mm_add_ps(fjy0,ty);
2023 fjz0 = _mm_add_ps(fjz0,tz);
2025 /**************************
2026 * CALCULATE INTERACTIONS *
2027 **************************/
2029 r01 = _mm_mul_ps(rsq01,rinv01);
2030 r01 = _mm_andnot_ps(dummy_mask,r01);
2032 /* EWALD ELECTROSTATICS */
2034 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2035 ewrt = _mm_mul_ps(r01,ewtabscale);
2036 ewitab = _mm_cvttps_epi32(ewrt);
2037 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2038 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2039 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2041 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2042 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
2046 fscal = _mm_andnot_ps(dummy_mask,fscal);
2048 /* Calculate temporary vectorial force */
2049 tx = _mm_mul_ps(fscal,dx01);
2050 ty = _mm_mul_ps(fscal,dy01);
2051 tz = _mm_mul_ps(fscal,dz01);
2053 /* Update vectorial force */
2054 fix0 = _mm_add_ps(fix0,tx);
2055 fiy0 = _mm_add_ps(fiy0,ty);
2056 fiz0 = _mm_add_ps(fiz0,tz);
2058 fjx1 = _mm_add_ps(fjx1,tx);
2059 fjy1 = _mm_add_ps(fjy1,ty);
2060 fjz1 = _mm_add_ps(fjz1,tz);
2062 /**************************
2063 * CALCULATE INTERACTIONS *
2064 **************************/
2066 r02 = _mm_mul_ps(rsq02,rinv02);
2067 r02 = _mm_andnot_ps(dummy_mask,r02);
2069 /* EWALD ELECTROSTATICS */
2071 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2072 ewrt = _mm_mul_ps(r02,ewtabscale);
2073 ewitab = _mm_cvttps_epi32(ewrt);
2074 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2075 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2076 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2078 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2079 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
2083 fscal = _mm_andnot_ps(dummy_mask,fscal);
2085 /* Calculate temporary vectorial force */
2086 tx = _mm_mul_ps(fscal,dx02);
2087 ty = _mm_mul_ps(fscal,dy02);
2088 tz = _mm_mul_ps(fscal,dz02);
2090 /* Update vectorial force */
2091 fix0 = _mm_add_ps(fix0,tx);
2092 fiy0 = _mm_add_ps(fiy0,ty);
2093 fiz0 = _mm_add_ps(fiz0,tz);
2095 fjx2 = _mm_add_ps(fjx2,tx);
2096 fjy2 = _mm_add_ps(fjy2,ty);
2097 fjz2 = _mm_add_ps(fjz2,tz);
2099 /**************************
2100 * CALCULATE INTERACTIONS *
2101 **************************/
2103 r10 = _mm_mul_ps(rsq10,rinv10);
2104 r10 = _mm_andnot_ps(dummy_mask,r10);
2106 /* EWALD ELECTROSTATICS */
2108 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2109 ewrt = _mm_mul_ps(r10,ewtabscale);
2110 ewitab = _mm_cvttps_epi32(ewrt);
2111 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2112 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2113 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2115 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2116 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
2120 fscal = _mm_andnot_ps(dummy_mask,fscal);
2122 /* Calculate temporary vectorial force */
2123 tx = _mm_mul_ps(fscal,dx10);
2124 ty = _mm_mul_ps(fscal,dy10);
2125 tz = _mm_mul_ps(fscal,dz10);
2127 /* Update vectorial force */
2128 fix1 = _mm_add_ps(fix1,tx);
2129 fiy1 = _mm_add_ps(fiy1,ty);
2130 fiz1 = _mm_add_ps(fiz1,tz);
2132 fjx0 = _mm_add_ps(fjx0,tx);
2133 fjy0 = _mm_add_ps(fjy0,ty);
2134 fjz0 = _mm_add_ps(fjz0,tz);
2136 /**************************
2137 * CALCULATE INTERACTIONS *
2138 **************************/
2140 r11 = _mm_mul_ps(rsq11,rinv11);
2141 r11 = _mm_andnot_ps(dummy_mask,r11);
2143 /* EWALD ELECTROSTATICS */
2145 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2146 ewrt = _mm_mul_ps(r11,ewtabscale);
2147 ewitab = _mm_cvttps_epi32(ewrt);
2148 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2149 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2150 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2152 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2153 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
2157 fscal = _mm_andnot_ps(dummy_mask,fscal);
2159 /* Calculate temporary vectorial force */
2160 tx = _mm_mul_ps(fscal,dx11);
2161 ty = _mm_mul_ps(fscal,dy11);
2162 tz = _mm_mul_ps(fscal,dz11);
2164 /* Update vectorial force */
2165 fix1 = _mm_add_ps(fix1,tx);
2166 fiy1 = _mm_add_ps(fiy1,ty);
2167 fiz1 = _mm_add_ps(fiz1,tz);
2169 fjx1 = _mm_add_ps(fjx1,tx);
2170 fjy1 = _mm_add_ps(fjy1,ty);
2171 fjz1 = _mm_add_ps(fjz1,tz);
2173 /**************************
2174 * CALCULATE INTERACTIONS *
2175 **************************/
2177 r12 = _mm_mul_ps(rsq12,rinv12);
2178 r12 = _mm_andnot_ps(dummy_mask,r12);
2180 /* EWALD ELECTROSTATICS */
2182 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2183 ewrt = _mm_mul_ps(r12,ewtabscale);
2184 ewitab = _mm_cvttps_epi32(ewrt);
2185 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2186 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2187 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2189 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2190 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
2194 fscal = _mm_andnot_ps(dummy_mask,fscal);
2196 /* Calculate temporary vectorial force */
2197 tx = _mm_mul_ps(fscal,dx12);
2198 ty = _mm_mul_ps(fscal,dy12);
2199 tz = _mm_mul_ps(fscal,dz12);
2201 /* Update vectorial force */
2202 fix1 = _mm_add_ps(fix1,tx);
2203 fiy1 = _mm_add_ps(fiy1,ty);
2204 fiz1 = _mm_add_ps(fiz1,tz);
2206 fjx2 = _mm_add_ps(fjx2,tx);
2207 fjy2 = _mm_add_ps(fjy2,ty);
2208 fjz2 = _mm_add_ps(fjz2,tz);
2210 /**************************
2211 * CALCULATE INTERACTIONS *
2212 **************************/
2214 r20 = _mm_mul_ps(rsq20,rinv20);
2215 r20 = _mm_andnot_ps(dummy_mask,r20);
2217 /* EWALD ELECTROSTATICS */
2219 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2220 ewrt = _mm_mul_ps(r20,ewtabscale);
2221 ewitab = _mm_cvttps_epi32(ewrt);
2222 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2223 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2224 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2226 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2227 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
2231 fscal = _mm_andnot_ps(dummy_mask,fscal);
2233 /* Calculate temporary vectorial force */
2234 tx = _mm_mul_ps(fscal,dx20);
2235 ty = _mm_mul_ps(fscal,dy20);
2236 tz = _mm_mul_ps(fscal,dz20);
2238 /* Update vectorial force */
2239 fix2 = _mm_add_ps(fix2,tx);
2240 fiy2 = _mm_add_ps(fiy2,ty);
2241 fiz2 = _mm_add_ps(fiz2,tz);
2243 fjx0 = _mm_add_ps(fjx0,tx);
2244 fjy0 = _mm_add_ps(fjy0,ty);
2245 fjz0 = _mm_add_ps(fjz0,tz);
2247 /**************************
2248 * CALCULATE INTERACTIONS *
2249 **************************/
2251 r21 = _mm_mul_ps(rsq21,rinv21);
2252 r21 = _mm_andnot_ps(dummy_mask,r21);
2254 /* EWALD ELECTROSTATICS */
2256 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2257 ewrt = _mm_mul_ps(r21,ewtabscale);
2258 ewitab = _mm_cvttps_epi32(ewrt);
2259 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2260 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2261 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2263 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2264 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
2268 fscal = _mm_andnot_ps(dummy_mask,fscal);
2270 /* Calculate temporary vectorial force */
2271 tx = _mm_mul_ps(fscal,dx21);
2272 ty = _mm_mul_ps(fscal,dy21);
2273 tz = _mm_mul_ps(fscal,dz21);
2275 /* Update vectorial force */
2276 fix2 = _mm_add_ps(fix2,tx);
2277 fiy2 = _mm_add_ps(fiy2,ty);
2278 fiz2 = _mm_add_ps(fiz2,tz);
2280 fjx1 = _mm_add_ps(fjx1,tx);
2281 fjy1 = _mm_add_ps(fjy1,ty);
2282 fjz1 = _mm_add_ps(fjz1,tz);
2284 /**************************
2285 * CALCULATE INTERACTIONS *
2286 **************************/
2288 r22 = _mm_mul_ps(rsq22,rinv22);
2289 r22 = _mm_andnot_ps(dummy_mask,r22);
2291 /* EWALD ELECTROSTATICS */
2293 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2294 ewrt = _mm_mul_ps(r22,ewtabscale);
2295 ewitab = _mm_cvttps_epi32(ewrt);
2296 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2297 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2298 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2300 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2301 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
2305 fscal = _mm_andnot_ps(dummy_mask,fscal);
2307 /* Calculate temporary vectorial force */
2308 tx = _mm_mul_ps(fscal,dx22);
2309 ty = _mm_mul_ps(fscal,dy22);
2310 tz = _mm_mul_ps(fscal,dz22);
2312 /* Update vectorial force */
2313 fix2 = _mm_add_ps(fix2,tx);
2314 fiy2 = _mm_add_ps(fiy2,ty);
2315 fiz2 = _mm_add_ps(fiz2,tz);
2317 fjx2 = _mm_add_ps(fjx2,tx);
2318 fjy2 = _mm_add_ps(fjy2,ty);
2319 fjz2 = _mm_add_ps(fjz2,tz);
2321 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
2322 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
2323 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
2324 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
2326 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
2327 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2329 /* Inner loop uses 356 flops */
2332 /* End of innermost loop */
2334 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2335 f+i_coord_offset,fshift+i_shift_offset);
2337 /* Increment number of inner iterations */
2338 inneriter += j_index_end - j_index_start;
2340 /* Outer loop uses 18 flops */
2343 /* Increment number of outer iterations */
2346 /* Update outer/inner flops */
2348 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*356);