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36 * Note: this file was generated by the GROMACS sse2_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
49 #include "gromacs/simd/math_x86_sse2_single.h"
50 #include "kernelutil_x86_sse2_single.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwNone_GeomP1P1_VF_sse2_single
54 * Electrostatics interaction: Coulomb
55 * VdW interaction: None
56 * Geometry: Particle-Particle
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecCoul_VdwNone_GeomP1P1_VF_sse2_single
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
76 int jnrA,jnrB,jnrC,jnrD;
77 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
78 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
79 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
81 real *shiftvec,*fshift,*x,*f;
82 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
84 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
87 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
88 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
89 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
90 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
92 __m128 dummy_mask,cutoff_mask;
93 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
94 __m128 one = _mm_set1_ps(1.0);
95 __m128 two = _mm_set1_ps(2.0);
101 jindex = nlist->jindex;
103 shiftidx = nlist->shift;
105 shiftvec = fr->shift_vec[0];
106 fshift = fr->fshift[0];
107 facel = _mm_set1_ps(fr->epsfac);
108 charge = mdatoms->chargeA;
110 /* Avoid stupid compiler warnings */
111 jnrA = jnrB = jnrC = jnrD = 0;
120 for(iidx=0;iidx<4*DIM;iidx++)
125 /* Start outer loop over neighborlists */
126 for(iidx=0; iidx<nri; iidx++)
128 /* Load shift vector for this list */
129 i_shift_offset = DIM*shiftidx[iidx];
131 /* Load limits for loop over neighbors */
132 j_index_start = jindex[iidx];
133 j_index_end = jindex[iidx+1];
135 /* Get outer coordinate index */
137 i_coord_offset = DIM*inr;
139 /* Load i particle coords and add shift vector */
140 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
142 fix0 = _mm_setzero_ps();
143 fiy0 = _mm_setzero_ps();
144 fiz0 = _mm_setzero_ps();
146 /* Load parameters for i particles */
147 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
149 /* Reset potential sums */
150 velecsum = _mm_setzero_ps();
152 /* Start inner kernel loop */
153 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
156 /* Get j neighbor index, and coordinate index */
161 j_coord_offsetA = DIM*jnrA;
162 j_coord_offsetB = DIM*jnrB;
163 j_coord_offsetC = DIM*jnrC;
164 j_coord_offsetD = DIM*jnrD;
166 /* load j atom coordinates */
167 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
168 x+j_coord_offsetC,x+j_coord_offsetD,
171 /* Calculate displacement vector */
172 dx00 = _mm_sub_ps(ix0,jx0);
173 dy00 = _mm_sub_ps(iy0,jy0);
174 dz00 = _mm_sub_ps(iz0,jz0);
176 /* Calculate squared distance and things based on it */
177 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
179 rinv00 = gmx_mm_invsqrt_ps(rsq00);
181 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
183 /* Load parameters for j particles */
184 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
185 charge+jnrC+0,charge+jnrD+0);
187 /**************************
188 * CALCULATE INTERACTIONS *
189 **************************/
191 /* Compute parameters for interactions between i and j atoms */
192 qq00 = _mm_mul_ps(iq0,jq0);
194 /* COULOMB ELECTROSTATICS */
195 velec = _mm_mul_ps(qq00,rinv00);
196 felec = _mm_mul_ps(velec,rinvsq00);
198 /* Update potential sum for this i atom from the interaction with this j atom. */
199 velecsum = _mm_add_ps(velecsum,velec);
203 /* Calculate temporary vectorial force */
204 tx = _mm_mul_ps(fscal,dx00);
205 ty = _mm_mul_ps(fscal,dy00);
206 tz = _mm_mul_ps(fscal,dz00);
208 /* Update vectorial force */
209 fix0 = _mm_add_ps(fix0,tx);
210 fiy0 = _mm_add_ps(fiy0,ty);
211 fiz0 = _mm_add_ps(fiz0,tz);
213 fjptrA = f+j_coord_offsetA;
214 fjptrB = f+j_coord_offsetB;
215 fjptrC = f+j_coord_offsetC;
216 fjptrD = f+j_coord_offsetD;
217 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
219 /* Inner loop uses 28 flops */
225 /* Get j neighbor index, and coordinate index */
226 jnrlistA = jjnr[jidx];
227 jnrlistB = jjnr[jidx+1];
228 jnrlistC = jjnr[jidx+2];
229 jnrlistD = jjnr[jidx+3];
230 /* Sign of each element will be negative for non-real atoms.
231 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
232 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
234 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
235 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
236 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
237 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
238 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
239 j_coord_offsetA = DIM*jnrA;
240 j_coord_offsetB = DIM*jnrB;
241 j_coord_offsetC = DIM*jnrC;
242 j_coord_offsetD = DIM*jnrD;
244 /* load j atom coordinates */
245 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
246 x+j_coord_offsetC,x+j_coord_offsetD,
249 /* Calculate displacement vector */
250 dx00 = _mm_sub_ps(ix0,jx0);
251 dy00 = _mm_sub_ps(iy0,jy0);
252 dz00 = _mm_sub_ps(iz0,jz0);
254 /* Calculate squared distance and things based on it */
255 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
257 rinv00 = gmx_mm_invsqrt_ps(rsq00);
259 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
261 /* Load parameters for j particles */
262 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
263 charge+jnrC+0,charge+jnrD+0);
265 /**************************
266 * CALCULATE INTERACTIONS *
267 **************************/
269 /* Compute parameters for interactions between i and j atoms */
270 qq00 = _mm_mul_ps(iq0,jq0);
272 /* COULOMB ELECTROSTATICS */
273 velec = _mm_mul_ps(qq00,rinv00);
274 felec = _mm_mul_ps(velec,rinvsq00);
276 /* Update potential sum for this i atom from the interaction with this j atom. */
277 velec = _mm_andnot_ps(dummy_mask,velec);
278 velecsum = _mm_add_ps(velecsum,velec);
282 fscal = _mm_andnot_ps(dummy_mask,fscal);
284 /* Calculate temporary vectorial force */
285 tx = _mm_mul_ps(fscal,dx00);
286 ty = _mm_mul_ps(fscal,dy00);
287 tz = _mm_mul_ps(fscal,dz00);
289 /* Update vectorial force */
290 fix0 = _mm_add_ps(fix0,tx);
291 fiy0 = _mm_add_ps(fiy0,ty);
292 fiz0 = _mm_add_ps(fiz0,tz);
294 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
295 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
296 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
297 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
298 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
300 /* Inner loop uses 28 flops */
303 /* End of innermost loop */
305 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
306 f+i_coord_offset,fshift+i_shift_offset);
309 /* Update potential energies */
310 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
312 /* Increment number of inner iterations */
313 inneriter += j_index_end - j_index_start;
315 /* Outer loop uses 8 flops */
318 /* Increment number of outer iterations */
321 /* Update outer/inner flops */
323 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*28);
326 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwNone_GeomP1P1_F_sse2_single
327 * Electrostatics interaction: Coulomb
328 * VdW interaction: None
329 * Geometry: Particle-Particle
330 * Calculate force/pot: Force
333 nb_kernel_ElecCoul_VdwNone_GeomP1P1_F_sse2_single
334 (t_nblist * gmx_restrict nlist,
335 rvec * gmx_restrict xx,
336 rvec * gmx_restrict ff,
337 t_forcerec * gmx_restrict fr,
338 t_mdatoms * gmx_restrict mdatoms,
339 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
340 t_nrnb * gmx_restrict nrnb)
342 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
343 * just 0 for non-waters.
344 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
345 * jnr indices corresponding to data put in the four positions in the SIMD register.
347 int i_shift_offset,i_coord_offset,outeriter,inneriter;
348 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
349 int jnrA,jnrB,jnrC,jnrD;
350 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
351 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
352 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
354 real *shiftvec,*fshift,*x,*f;
355 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
357 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
359 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
360 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
361 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
362 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
363 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
365 __m128 dummy_mask,cutoff_mask;
366 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
367 __m128 one = _mm_set1_ps(1.0);
368 __m128 two = _mm_set1_ps(2.0);
374 jindex = nlist->jindex;
376 shiftidx = nlist->shift;
378 shiftvec = fr->shift_vec[0];
379 fshift = fr->fshift[0];
380 facel = _mm_set1_ps(fr->epsfac);
381 charge = mdatoms->chargeA;
383 /* Avoid stupid compiler warnings */
384 jnrA = jnrB = jnrC = jnrD = 0;
393 for(iidx=0;iidx<4*DIM;iidx++)
398 /* Start outer loop over neighborlists */
399 for(iidx=0; iidx<nri; iidx++)
401 /* Load shift vector for this list */
402 i_shift_offset = DIM*shiftidx[iidx];
404 /* Load limits for loop over neighbors */
405 j_index_start = jindex[iidx];
406 j_index_end = jindex[iidx+1];
408 /* Get outer coordinate index */
410 i_coord_offset = DIM*inr;
412 /* Load i particle coords and add shift vector */
413 gmx_mm_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
415 fix0 = _mm_setzero_ps();
416 fiy0 = _mm_setzero_ps();
417 fiz0 = _mm_setzero_ps();
419 /* Load parameters for i particles */
420 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
422 /* Start inner kernel loop */
423 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
426 /* Get j neighbor index, and coordinate index */
431 j_coord_offsetA = DIM*jnrA;
432 j_coord_offsetB = DIM*jnrB;
433 j_coord_offsetC = DIM*jnrC;
434 j_coord_offsetD = DIM*jnrD;
436 /* load j atom coordinates */
437 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
438 x+j_coord_offsetC,x+j_coord_offsetD,
441 /* Calculate displacement vector */
442 dx00 = _mm_sub_ps(ix0,jx0);
443 dy00 = _mm_sub_ps(iy0,jy0);
444 dz00 = _mm_sub_ps(iz0,jz0);
446 /* Calculate squared distance and things based on it */
447 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
449 rinv00 = gmx_mm_invsqrt_ps(rsq00);
451 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
453 /* Load parameters for j particles */
454 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
455 charge+jnrC+0,charge+jnrD+0);
457 /**************************
458 * CALCULATE INTERACTIONS *
459 **************************/
461 /* Compute parameters for interactions between i and j atoms */
462 qq00 = _mm_mul_ps(iq0,jq0);
464 /* COULOMB ELECTROSTATICS */
465 velec = _mm_mul_ps(qq00,rinv00);
466 felec = _mm_mul_ps(velec,rinvsq00);
470 /* Calculate temporary vectorial force */
471 tx = _mm_mul_ps(fscal,dx00);
472 ty = _mm_mul_ps(fscal,dy00);
473 tz = _mm_mul_ps(fscal,dz00);
475 /* Update vectorial force */
476 fix0 = _mm_add_ps(fix0,tx);
477 fiy0 = _mm_add_ps(fiy0,ty);
478 fiz0 = _mm_add_ps(fiz0,tz);
480 fjptrA = f+j_coord_offsetA;
481 fjptrB = f+j_coord_offsetB;
482 fjptrC = f+j_coord_offsetC;
483 fjptrD = f+j_coord_offsetD;
484 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
486 /* Inner loop uses 27 flops */
492 /* Get j neighbor index, and coordinate index */
493 jnrlistA = jjnr[jidx];
494 jnrlistB = jjnr[jidx+1];
495 jnrlistC = jjnr[jidx+2];
496 jnrlistD = jjnr[jidx+3];
497 /* Sign of each element will be negative for non-real atoms.
498 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
499 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
501 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
502 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
503 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
504 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
505 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
506 j_coord_offsetA = DIM*jnrA;
507 j_coord_offsetB = DIM*jnrB;
508 j_coord_offsetC = DIM*jnrC;
509 j_coord_offsetD = DIM*jnrD;
511 /* load j atom coordinates */
512 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
513 x+j_coord_offsetC,x+j_coord_offsetD,
516 /* Calculate displacement vector */
517 dx00 = _mm_sub_ps(ix0,jx0);
518 dy00 = _mm_sub_ps(iy0,jy0);
519 dz00 = _mm_sub_ps(iz0,jz0);
521 /* Calculate squared distance and things based on it */
522 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
524 rinv00 = gmx_mm_invsqrt_ps(rsq00);
526 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
528 /* Load parameters for j particles */
529 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
530 charge+jnrC+0,charge+jnrD+0);
532 /**************************
533 * CALCULATE INTERACTIONS *
534 **************************/
536 /* Compute parameters for interactions between i and j atoms */
537 qq00 = _mm_mul_ps(iq0,jq0);
539 /* COULOMB ELECTROSTATICS */
540 velec = _mm_mul_ps(qq00,rinv00);
541 felec = _mm_mul_ps(velec,rinvsq00);
545 fscal = _mm_andnot_ps(dummy_mask,fscal);
547 /* Calculate temporary vectorial force */
548 tx = _mm_mul_ps(fscal,dx00);
549 ty = _mm_mul_ps(fscal,dy00);
550 tz = _mm_mul_ps(fscal,dz00);
552 /* Update vectorial force */
553 fix0 = _mm_add_ps(fix0,tx);
554 fiy0 = _mm_add_ps(fiy0,ty);
555 fiz0 = _mm_add_ps(fiz0,tz);
557 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
558 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
559 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
560 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
561 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
563 /* Inner loop uses 27 flops */
566 /* End of innermost loop */
568 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
569 f+i_coord_offset,fshift+i_shift_offset);
571 /* Increment number of inner iterations */
572 inneriter += j_index_end - j_index_start;
574 /* Outer loop uses 7 flops */
577 /* Increment number of outer iterations */
580 /* Update outer/inner flops */
582 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*27);