Merge 'release-4-6' into master
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_sse2_single / nb_kernel_ElecCoul_VdwLJ_GeomW3P1_sse2_single.c
1 /*
2  * Note: this file was generated by the Gromacs sse2_single kernel generator.
3  *
4  *                This source code is part of
5  *
6  *                 G   R   O   M   A   C   S
7  *
8  * Copyright (c) 2001-2012, The GROMACS Development Team
9  *
10  * Gromacs is a library for molecular simulation and trajectory analysis,
11  * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12  * a full list of developers and information, check out http://www.gromacs.org
13  *
14  * This program is free software; you can redistribute it and/or modify it under
15  * the terms of the GNU Lesser General Public License as published by the Free
16  * Software Foundation; either version 2 of the License, or (at your option) any
17  * later version.
18  *
19  * To help fund GROMACS development, we humbly ask that you cite
20  * the papers people have written on it - you can find them on the website.
21  */
22 #ifdef HAVE_CONFIG_H
23 #include <config.h>
24 #endif
25
26 #include <math.h>
27
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
30 #include "vec.h"
31 #include "nrnb.h"
32
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
35
36 /*
37  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_sse2_single
38  * Electrostatics interaction: Coulomb
39  * VdW interaction:            LennardJones
40  * Geometry:                   Water3-Particle
41  * Calculate force/pot:        PotentialAndForce
42  */
43 void
44 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_sse2_single
45                     (t_nblist * gmx_restrict                nlist,
46                      rvec * gmx_restrict                    xx,
47                      rvec * gmx_restrict                    ff,
48                      t_forcerec * gmx_restrict              fr,
49                      t_mdatoms * gmx_restrict               mdatoms,
50                      nb_kernel_data_t * gmx_restrict        kernel_data,
51                      t_nrnb * gmx_restrict                  nrnb)
52 {
53     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
54      * just 0 for non-waters.
55      * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56      * jnr indices corresponding to data put in the four positions in the SIMD register.
57      */
58     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
59     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60     int              jnrA,jnrB,jnrC,jnrD;
61     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
63     real             shX,shY,shZ,rcutoff_scalar;
64     real             *shiftvec,*fshift,*x,*f;
65     __m128           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
66     int              vdwioffset0;
67     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68     int              vdwioffset1;
69     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
70     int              vdwioffset2;
71     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
72     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
73     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
74     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
75     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
76     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
77     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
78     real             *charge;
79     int              nvdwtype;
80     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
81     int              *vdwtype;
82     real             *vdwparam;
83     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
84     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
85     __m128           dummy_mask,cutoff_mask;
86     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
87     __m128           one     = _mm_set1_ps(1.0);
88     __m128           two     = _mm_set1_ps(2.0);
89     x                = xx[0];
90     f                = ff[0];
91
92     nri              = nlist->nri;
93     iinr             = nlist->iinr;
94     jindex           = nlist->jindex;
95     jjnr             = nlist->jjnr;
96     shiftidx         = nlist->shift;
97     gid              = nlist->gid;
98     shiftvec         = fr->shift_vec[0];
99     fshift           = fr->fshift[0];
100     facel            = _mm_set1_ps(fr->epsfac);
101     charge           = mdatoms->chargeA;
102     nvdwtype         = fr->ntype;
103     vdwparam         = fr->nbfp;
104     vdwtype          = mdatoms->typeA;
105
106     /* Setup water-specific parameters */
107     inr              = nlist->iinr[0];
108     iq0              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
109     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
110     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
111     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
112
113     /* Avoid stupid compiler warnings */
114     jnrA = jnrB = jnrC = jnrD = 0;
115     j_coord_offsetA = 0;
116     j_coord_offsetB = 0;
117     j_coord_offsetC = 0;
118     j_coord_offsetD = 0;
119
120     outeriter        = 0;
121     inneriter        = 0;
122
123     /* Start outer loop over neighborlists */
124     for(iidx=0; iidx<nri; iidx++)
125     {
126         /* Load shift vector for this list */
127         i_shift_offset   = DIM*shiftidx[iidx];
128         shX              = shiftvec[i_shift_offset+XX];
129         shY              = shiftvec[i_shift_offset+YY];
130         shZ              = shiftvec[i_shift_offset+ZZ];
131
132         /* Load limits for loop over neighbors */
133         j_index_start    = jindex[iidx];
134         j_index_end      = jindex[iidx+1];
135
136         /* Get outer coordinate index */
137         inr              = iinr[iidx];
138         i_coord_offset   = DIM*inr;
139
140         /* Load i particle coords and add shift vector */
141         ix0              = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
142         iy0              = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
143         iz0              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
144         ix1              = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
145         iy1              = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
146         iz1              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
147         ix2              = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
148         iy2              = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
149         iz2              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
150
151         fix0             = _mm_setzero_ps();
152         fiy0             = _mm_setzero_ps();
153         fiz0             = _mm_setzero_ps();
154         fix1             = _mm_setzero_ps();
155         fiy1             = _mm_setzero_ps();
156         fiz1             = _mm_setzero_ps();
157         fix2             = _mm_setzero_ps();
158         fiy2             = _mm_setzero_ps();
159         fiz2             = _mm_setzero_ps();
160
161         /* Reset potential sums */
162         velecsum         = _mm_setzero_ps();
163         vvdwsum          = _mm_setzero_ps();
164
165         /* Start inner kernel loop */
166         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
167         {
168
169             /* Get j neighbor index, and coordinate index */
170             jnrA             = jjnr[jidx];
171             jnrB             = jjnr[jidx+1];
172             jnrC             = jjnr[jidx+2];
173             jnrD             = jjnr[jidx+3];
174
175             j_coord_offsetA  = DIM*jnrA;
176             j_coord_offsetB  = DIM*jnrB;
177             j_coord_offsetC  = DIM*jnrC;
178             j_coord_offsetD  = DIM*jnrD;
179
180             /* load j atom coordinates */
181             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
182                                               x+j_coord_offsetC,x+j_coord_offsetD,
183                                               &jx0,&jy0,&jz0);
184
185             /* Calculate displacement vector */
186             dx00             = _mm_sub_ps(ix0,jx0);
187             dy00             = _mm_sub_ps(iy0,jy0);
188             dz00             = _mm_sub_ps(iz0,jz0);
189             dx10             = _mm_sub_ps(ix1,jx0);
190             dy10             = _mm_sub_ps(iy1,jy0);
191             dz10             = _mm_sub_ps(iz1,jz0);
192             dx20             = _mm_sub_ps(ix2,jx0);
193             dy20             = _mm_sub_ps(iy2,jy0);
194             dz20             = _mm_sub_ps(iz2,jz0);
195
196             /* Calculate squared distance and things based on it */
197             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
198             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
199             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
200
201             rinv00           = gmx_mm_invsqrt_ps(rsq00);
202             rinv10           = gmx_mm_invsqrt_ps(rsq10);
203             rinv20           = gmx_mm_invsqrt_ps(rsq20);
204
205             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
206             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
207             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
208
209             /* Load parameters for j particles */
210             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
211                                                               charge+jnrC+0,charge+jnrD+0);
212             vdwjidx0A        = 2*vdwtype[jnrA+0];
213             vdwjidx0B        = 2*vdwtype[jnrB+0];
214             vdwjidx0C        = 2*vdwtype[jnrC+0];
215             vdwjidx0D        = 2*vdwtype[jnrD+0];
216
217             /**************************
218              * CALCULATE INTERACTIONS *
219              **************************/
220
221             /* Compute parameters for interactions between i and j atoms */
222             qq00             = _mm_mul_ps(iq0,jq0);
223             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
224                                          vdwparam+vdwioffset0+vdwjidx0B,
225                                          vdwparam+vdwioffset0+vdwjidx0C,
226                                          vdwparam+vdwioffset0+vdwjidx0D,
227                                          &c6_00,&c12_00);
228
229             /* COULOMB ELECTROSTATICS */
230             velec            = _mm_mul_ps(qq00,rinv00);
231             felec            = _mm_mul_ps(velec,rinvsq00);
232
233             /* LENNARD-JONES DISPERSION/REPULSION */
234
235             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
236             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
237             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
238             vvdw             = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
239             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
240
241             /* Update potential sum for this i atom from the interaction with this j atom. */
242             velecsum         = _mm_add_ps(velecsum,velec);
243             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
244
245             fscal            = _mm_add_ps(felec,fvdw);
246
247             /* Calculate temporary vectorial force */
248             tx               = _mm_mul_ps(fscal,dx00);
249             ty               = _mm_mul_ps(fscal,dy00);
250             tz               = _mm_mul_ps(fscal,dz00);
251
252             /* Update vectorial force */
253             fix0             = _mm_add_ps(fix0,tx);
254             fiy0             = _mm_add_ps(fiy0,ty);
255             fiz0             = _mm_add_ps(fiz0,tz);
256
257             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
258                                                    f+j_coord_offsetC,f+j_coord_offsetD,
259                                                    tx,ty,tz);
260
261             /**************************
262              * CALCULATE INTERACTIONS *
263              **************************/
264
265             /* Compute parameters for interactions between i and j atoms */
266             qq10             = _mm_mul_ps(iq1,jq0);
267
268             /* COULOMB ELECTROSTATICS */
269             velec            = _mm_mul_ps(qq10,rinv10);
270             felec            = _mm_mul_ps(velec,rinvsq10);
271
272             /* Update potential sum for this i atom from the interaction with this j atom. */
273             velecsum         = _mm_add_ps(velecsum,velec);
274
275             fscal            = felec;
276
277             /* Calculate temporary vectorial force */
278             tx               = _mm_mul_ps(fscal,dx10);
279             ty               = _mm_mul_ps(fscal,dy10);
280             tz               = _mm_mul_ps(fscal,dz10);
281
282             /* Update vectorial force */
283             fix1             = _mm_add_ps(fix1,tx);
284             fiy1             = _mm_add_ps(fiy1,ty);
285             fiz1             = _mm_add_ps(fiz1,tz);
286
287             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
288                                                    f+j_coord_offsetC,f+j_coord_offsetD,
289                                                    tx,ty,tz);
290
291             /**************************
292              * CALCULATE INTERACTIONS *
293              **************************/
294
295             /* Compute parameters for interactions between i and j atoms */
296             qq20             = _mm_mul_ps(iq2,jq0);
297
298             /* COULOMB ELECTROSTATICS */
299             velec            = _mm_mul_ps(qq20,rinv20);
300             felec            = _mm_mul_ps(velec,rinvsq20);
301
302             /* Update potential sum for this i atom from the interaction with this j atom. */
303             velecsum         = _mm_add_ps(velecsum,velec);
304
305             fscal            = felec;
306
307             /* Calculate temporary vectorial force */
308             tx               = _mm_mul_ps(fscal,dx20);
309             ty               = _mm_mul_ps(fscal,dy20);
310             tz               = _mm_mul_ps(fscal,dz20);
311
312             /* Update vectorial force */
313             fix2             = _mm_add_ps(fix2,tx);
314             fiy2             = _mm_add_ps(fiy2,ty);
315             fiz2             = _mm_add_ps(fiz2,tz);
316
317             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
318                                                    f+j_coord_offsetC,f+j_coord_offsetD,
319                                                    tx,ty,tz);
320
321             /* Inner loop uses 96 flops */
322         }
323
324         if(jidx<j_index_end)
325         {
326
327             /* Get j neighbor index, and coordinate index */
328             jnrA             = jjnr[jidx];
329             jnrB             = jjnr[jidx+1];
330             jnrC             = jjnr[jidx+2];
331             jnrD             = jjnr[jidx+3];
332
333             /* Sign of each element will be negative for non-real atoms.
334              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
335              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
336              */
337             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
338             jnrA       = (jnrA>=0) ? jnrA : 0;
339             jnrB       = (jnrB>=0) ? jnrB : 0;
340             jnrC       = (jnrC>=0) ? jnrC : 0;
341             jnrD       = (jnrD>=0) ? jnrD : 0;
342
343             j_coord_offsetA  = DIM*jnrA;
344             j_coord_offsetB  = DIM*jnrB;
345             j_coord_offsetC  = DIM*jnrC;
346             j_coord_offsetD  = DIM*jnrD;
347
348             /* load j atom coordinates */
349             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
350                                               x+j_coord_offsetC,x+j_coord_offsetD,
351                                               &jx0,&jy0,&jz0);
352
353             /* Calculate displacement vector */
354             dx00             = _mm_sub_ps(ix0,jx0);
355             dy00             = _mm_sub_ps(iy0,jy0);
356             dz00             = _mm_sub_ps(iz0,jz0);
357             dx10             = _mm_sub_ps(ix1,jx0);
358             dy10             = _mm_sub_ps(iy1,jy0);
359             dz10             = _mm_sub_ps(iz1,jz0);
360             dx20             = _mm_sub_ps(ix2,jx0);
361             dy20             = _mm_sub_ps(iy2,jy0);
362             dz20             = _mm_sub_ps(iz2,jz0);
363
364             /* Calculate squared distance and things based on it */
365             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
366             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
367             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
368
369             rinv00           = gmx_mm_invsqrt_ps(rsq00);
370             rinv10           = gmx_mm_invsqrt_ps(rsq10);
371             rinv20           = gmx_mm_invsqrt_ps(rsq20);
372
373             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
374             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
375             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
376
377             /* Load parameters for j particles */
378             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
379                                                               charge+jnrC+0,charge+jnrD+0);
380             vdwjidx0A        = 2*vdwtype[jnrA+0];
381             vdwjidx0B        = 2*vdwtype[jnrB+0];
382             vdwjidx0C        = 2*vdwtype[jnrC+0];
383             vdwjidx0D        = 2*vdwtype[jnrD+0];
384
385             /**************************
386              * CALCULATE INTERACTIONS *
387              **************************/
388
389             /* Compute parameters for interactions between i and j atoms */
390             qq00             = _mm_mul_ps(iq0,jq0);
391             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
392                                          vdwparam+vdwioffset0+vdwjidx0B,
393                                          vdwparam+vdwioffset0+vdwjidx0C,
394                                          vdwparam+vdwioffset0+vdwjidx0D,
395                                          &c6_00,&c12_00);
396
397             /* COULOMB ELECTROSTATICS */
398             velec            = _mm_mul_ps(qq00,rinv00);
399             felec            = _mm_mul_ps(velec,rinvsq00);
400
401             /* LENNARD-JONES DISPERSION/REPULSION */
402
403             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
404             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
405             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
406             vvdw             = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
407             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
408
409             /* Update potential sum for this i atom from the interaction with this j atom. */
410             velec            = _mm_andnot_ps(dummy_mask,velec);
411             velecsum         = _mm_add_ps(velecsum,velec);
412             vvdw             = _mm_andnot_ps(dummy_mask,vvdw);
413             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
414
415             fscal            = _mm_add_ps(felec,fvdw);
416
417             fscal            = _mm_andnot_ps(dummy_mask,fscal);
418
419             /* Calculate temporary vectorial force */
420             tx               = _mm_mul_ps(fscal,dx00);
421             ty               = _mm_mul_ps(fscal,dy00);
422             tz               = _mm_mul_ps(fscal,dz00);
423
424             /* Update vectorial force */
425             fix0             = _mm_add_ps(fix0,tx);
426             fiy0             = _mm_add_ps(fiy0,ty);
427             fiz0             = _mm_add_ps(fiz0,tz);
428
429             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
430                                                    f+j_coord_offsetC,f+j_coord_offsetD,
431                                                    tx,ty,tz);
432
433             /**************************
434              * CALCULATE INTERACTIONS *
435              **************************/
436
437             /* Compute parameters for interactions between i and j atoms */
438             qq10             = _mm_mul_ps(iq1,jq0);
439
440             /* COULOMB ELECTROSTATICS */
441             velec            = _mm_mul_ps(qq10,rinv10);
442             felec            = _mm_mul_ps(velec,rinvsq10);
443
444             /* Update potential sum for this i atom from the interaction with this j atom. */
445             velec            = _mm_andnot_ps(dummy_mask,velec);
446             velecsum         = _mm_add_ps(velecsum,velec);
447
448             fscal            = felec;
449
450             fscal            = _mm_andnot_ps(dummy_mask,fscal);
451
452             /* Calculate temporary vectorial force */
453             tx               = _mm_mul_ps(fscal,dx10);
454             ty               = _mm_mul_ps(fscal,dy10);
455             tz               = _mm_mul_ps(fscal,dz10);
456
457             /* Update vectorial force */
458             fix1             = _mm_add_ps(fix1,tx);
459             fiy1             = _mm_add_ps(fiy1,ty);
460             fiz1             = _mm_add_ps(fiz1,tz);
461
462             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
463                                                    f+j_coord_offsetC,f+j_coord_offsetD,
464                                                    tx,ty,tz);
465
466             /**************************
467              * CALCULATE INTERACTIONS *
468              **************************/
469
470             /* Compute parameters for interactions between i and j atoms */
471             qq20             = _mm_mul_ps(iq2,jq0);
472
473             /* COULOMB ELECTROSTATICS */
474             velec            = _mm_mul_ps(qq20,rinv20);
475             felec            = _mm_mul_ps(velec,rinvsq20);
476
477             /* Update potential sum for this i atom from the interaction with this j atom. */
478             velec            = _mm_andnot_ps(dummy_mask,velec);
479             velecsum         = _mm_add_ps(velecsum,velec);
480
481             fscal            = felec;
482
483             fscal            = _mm_andnot_ps(dummy_mask,fscal);
484
485             /* Calculate temporary vectorial force */
486             tx               = _mm_mul_ps(fscal,dx20);
487             ty               = _mm_mul_ps(fscal,dy20);
488             tz               = _mm_mul_ps(fscal,dz20);
489
490             /* Update vectorial force */
491             fix2             = _mm_add_ps(fix2,tx);
492             fiy2             = _mm_add_ps(fiy2,ty);
493             fiz2             = _mm_add_ps(fiz2,tz);
494
495             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
496                                                    f+j_coord_offsetC,f+j_coord_offsetD,
497                                                    tx,ty,tz);
498
499             /* Inner loop uses 96 flops */
500         }
501
502         /* End of innermost loop */
503
504         gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
505                                               f+i_coord_offset,fshift+i_shift_offset);
506
507         ggid                        = gid[iidx];
508         /* Update potential energies */
509         gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
510         gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
511
512         /* Increment number of inner iterations */
513         inneriter                  += j_index_end - j_index_start;
514
515         /* Outer loop uses 29 flops */
516     }
517
518     /* Increment number of outer iterations */
519     outeriter        += nri;
520
521     /* Update outer/inner flops */
522
523     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*29 + inneriter*96);
524 }
525 /*
526  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_sse2_single
527  * Electrostatics interaction: Coulomb
528  * VdW interaction:            LennardJones
529  * Geometry:                   Water3-Particle
530  * Calculate force/pot:        Force
531  */
532 void
533 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_sse2_single
534                     (t_nblist * gmx_restrict                nlist,
535                      rvec * gmx_restrict                    xx,
536                      rvec * gmx_restrict                    ff,
537                      t_forcerec * gmx_restrict              fr,
538                      t_mdatoms * gmx_restrict               mdatoms,
539                      nb_kernel_data_t * gmx_restrict        kernel_data,
540                      t_nrnb * gmx_restrict                  nrnb)
541 {
542     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
543      * just 0 for non-waters.
544      * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
545      * jnr indices corresponding to data put in the four positions in the SIMD register.
546      */
547     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
548     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
549     int              jnrA,jnrB,jnrC,jnrD;
550     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
551     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
552     real             shX,shY,shZ,rcutoff_scalar;
553     real             *shiftvec,*fshift,*x,*f;
554     __m128           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
555     int              vdwioffset0;
556     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
557     int              vdwioffset1;
558     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
559     int              vdwioffset2;
560     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
561     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
562     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
563     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
564     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
565     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
566     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
567     real             *charge;
568     int              nvdwtype;
569     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
570     int              *vdwtype;
571     real             *vdwparam;
572     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
573     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
574     __m128           dummy_mask,cutoff_mask;
575     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
576     __m128           one     = _mm_set1_ps(1.0);
577     __m128           two     = _mm_set1_ps(2.0);
578     x                = xx[0];
579     f                = ff[0];
580
581     nri              = nlist->nri;
582     iinr             = nlist->iinr;
583     jindex           = nlist->jindex;
584     jjnr             = nlist->jjnr;
585     shiftidx         = nlist->shift;
586     gid              = nlist->gid;
587     shiftvec         = fr->shift_vec[0];
588     fshift           = fr->fshift[0];
589     facel            = _mm_set1_ps(fr->epsfac);
590     charge           = mdatoms->chargeA;
591     nvdwtype         = fr->ntype;
592     vdwparam         = fr->nbfp;
593     vdwtype          = mdatoms->typeA;
594
595     /* Setup water-specific parameters */
596     inr              = nlist->iinr[0];
597     iq0              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
598     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
599     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
600     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
601
602     /* Avoid stupid compiler warnings */
603     jnrA = jnrB = jnrC = jnrD = 0;
604     j_coord_offsetA = 0;
605     j_coord_offsetB = 0;
606     j_coord_offsetC = 0;
607     j_coord_offsetD = 0;
608
609     outeriter        = 0;
610     inneriter        = 0;
611
612     /* Start outer loop over neighborlists */
613     for(iidx=0; iidx<nri; iidx++)
614     {
615         /* Load shift vector for this list */
616         i_shift_offset   = DIM*shiftidx[iidx];
617         shX              = shiftvec[i_shift_offset+XX];
618         shY              = shiftvec[i_shift_offset+YY];
619         shZ              = shiftvec[i_shift_offset+ZZ];
620
621         /* Load limits for loop over neighbors */
622         j_index_start    = jindex[iidx];
623         j_index_end      = jindex[iidx+1];
624
625         /* Get outer coordinate index */
626         inr              = iinr[iidx];
627         i_coord_offset   = DIM*inr;
628
629         /* Load i particle coords and add shift vector */
630         ix0              = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
631         iy0              = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
632         iz0              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
633         ix1              = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
634         iy1              = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
635         iz1              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
636         ix2              = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
637         iy2              = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
638         iz2              = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
639
640         fix0             = _mm_setzero_ps();
641         fiy0             = _mm_setzero_ps();
642         fiz0             = _mm_setzero_ps();
643         fix1             = _mm_setzero_ps();
644         fiy1             = _mm_setzero_ps();
645         fiz1             = _mm_setzero_ps();
646         fix2             = _mm_setzero_ps();
647         fiy2             = _mm_setzero_ps();
648         fiz2             = _mm_setzero_ps();
649
650         /* Start inner kernel loop */
651         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
652         {
653
654             /* Get j neighbor index, and coordinate index */
655             jnrA             = jjnr[jidx];
656             jnrB             = jjnr[jidx+1];
657             jnrC             = jjnr[jidx+2];
658             jnrD             = jjnr[jidx+3];
659
660             j_coord_offsetA  = DIM*jnrA;
661             j_coord_offsetB  = DIM*jnrB;
662             j_coord_offsetC  = DIM*jnrC;
663             j_coord_offsetD  = DIM*jnrD;
664
665             /* load j atom coordinates */
666             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
667                                               x+j_coord_offsetC,x+j_coord_offsetD,
668                                               &jx0,&jy0,&jz0);
669
670             /* Calculate displacement vector */
671             dx00             = _mm_sub_ps(ix0,jx0);
672             dy00             = _mm_sub_ps(iy0,jy0);
673             dz00             = _mm_sub_ps(iz0,jz0);
674             dx10             = _mm_sub_ps(ix1,jx0);
675             dy10             = _mm_sub_ps(iy1,jy0);
676             dz10             = _mm_sub_ps(iz1,jz0);
677             dx20             = _mm_sub_ps(ix2,jx0);
678             dy20             = _mm_sub_ps(iy2,jy0);
679             dz20             = _mm_sub_ps(iz2,jz0);
680
681             /* Calculate squared distance and things based on it */
682             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
683             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
684             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
685
686             rinv00           = gmx_mm_invsqrt_ps(rsq00);
687             rinv10           = gmx_mm_invsqrt_ps(rsq10);
688             rinv20           = gmx_mm_invsqrt_ps(rsq20);
689
690             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
691             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
692             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
693
694             /* Load parameters for j particles */
695             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
696                                                               charge+jnrC+0,charge+jnrD+0);
697             vdwjidx0A        = 2*vdwtype[jnrA+0];
698             vdwjidx0B        = 2*vdwtype[jnrB+0];
699             vdwjidx0C        = 2*vdwtype[jnrC+0];
700             vdwjidx0D        = 2*vdwtype[jnrD+0];
701
702             /**************************
703              * CALCULATE INTERACTIONS *
704              **************************/
705
706             /* Compute parameters for interactions between i and j atoms */
707             qq00             = _mm_mul_ps(iq0,jq0);
708             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
709                                          vdwparam+vdwioffset0+vdwjidx0B,
710                                          vdwparam+vdwioffset0+vdwjidx0C,
711                                          vdwparam+vdwioffset0+vdwjidx0D,
712                                          &c6_00,&c12_00);
713
714             /* COULOMB ELECTROSTATICS */
715             velec            = _mm_mul_ps(qq00,rinv00);
716             felec            = _mm_mul_ps(velec,rinvsq00);
717
718             /* LENNARD-JONES DISPERSION/REPULSION */
719
720             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
721             fvdw             = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
722
723             fscal            = _mm_add_ps(felec,fvdw);
724
725             /* Calculate temporary vectorial force */
726             tx               = _mm_mul_ps(fscal,dx00);
727             ty               = _mm_mul_ps(fscal,dy00);
728             tz               = _mm_mul_ps(fscal,dz00);
729
730             /* Update vectorial force */
731             fix0             = _mm_add_ps(fix0,tx);
732             fiy0             = _mm_add_ps(fiy0,ty);
733             fiz0             = _mm_add_ps(fiz0,tz);
734
735             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
736                                                    f+j_coord_offsetC,f+j_coord_offsetD,
737                                                    tx,ty,tz);
738
739             /**************************
740              * CALCULATE INTERACTIONS *
741              **************************/
742
743             /* Compute parameters for interactions between i and j atoms */
744             qq10             = _mm_mul_ps(iq1,jq0);
745
746             /* COULOMB ELECTROSTATICS */
747             velec            = _mm_mul_ps(qq10,rinv10);
748             felec            = _mm_mul_ps(velec,rinvsq10);
749
750             fscal            = felec;
751
752             /* Calculate temporary vectorial force */
753             tx               = _mm_mul_ps(fscal,dx10);
754             ty               = _mm_mul_ps(fscal,dy10);
755             tz               = _mm_mul_ps(fscal,dz10);
756
757             /* Update vectorial force */
758             fix1             = _mm_add_ps(fix1,tx);
759             fiy1             = _mm_add_ps(fiy1,ty);
760             fiz1             = _mm_add_ps(fiz1,tz);
761
762             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
763                                                    f+j_coord_offsetC,f+j_coord_offsetD,
764                                                    tx,ty,tz);
765
766             /**************************
767              * CALCULATE INTERACTIONS *
768              **************************/
769
770             /* Compute parameters for interactions between i and j atoms */
771             qq20             = _mm_mul_ps(iq2,jq0);
772
773             /* COULOMB ELECTROSTATICS */
774             velec            = _mm_mul_ps(qq20,rinv20);
775             felec            = _mm_mul_ps(velec,rinvsq20);
776
777             fscal            = felec;
778
779             /* Calculate temporary vectorial force */
780             tx               = _mm_mul_ps(fscal,dx20);
781             ty               = _mm_mul_ps(fscal,dy20);
782             tz               = _mm_mul_ps(fscal,dz20);
783
784             /* Update vectorial force */
785             fix2             = _mm_add_ps(fix2,tx);
786             fiy2             = _mm_add_ps(fiy2,ty);
787             fiz2             = _mm_add_ps(fiz2,tz);
788
789             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
790                                                    f+j_coord_offsetC,f+j_coord_offsetD,
791                                                    tx,ty,tz);
792
793             /* Inner loop uses 88 flops */
794         }
795
796         if(jidx<j_index_end)
797         {
798
799             /* Get j neighbor index, and coordinate index */
800             jnrA             = jjnr[jidx];
801             jnrB             = jjnr[jidx+1];
802             jnrC             = jjnr[jidx+2];
803             jnrD             = jjnr[jidx+3];
804
805             /* Sign of each element will be negative for non-real atoms.
806              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
807              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
808              */
809             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
810             jnrA       = (jnrA>=0) ? jnrA : 0;
811             jnrB       = (jnrB>=0) ? jnrB : 0;
812             jnrC       = (jnrC>=0) ? jnrC : 0;
813             jnrD       = (jnrD>=0) ? jnrD : 0;
814
815             j_coord_offsetA  = DIM*jnrA;
816             j_coord_offsetB  = DIM*jnrB;
817             j_coord_offsetC  = DIM*jnrC;
818             j_coord_offsetD  = DIM*jnrD;
819
820             /* load j atom coordinates */
821             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
822                                               x+j_coord_offsetC,x+j_coord_offsetD,
823                                               &jx0,&jy0,&jz0);
824
825             /* Calculate displacement vector */
826             dx00             = _mm_sub_ps(ix0,jx0);
827             dy00             = _mm_sub_ps(iy0,jy0);
828             dz00             = _mm_sub_ps(iz0,jz0);
829             dx10             = _mm_sub_ps(ix1,jx0);
830             dy10             = _mm_sub_ps(iy1,jy0);
831             dz10             = _mm_sub_ps(iz1,jz0);
832             dx20             = _mm_sub_ps(ix2,jx0);
833             dy20             = _mm_sub_ps(iy2,jy0);
834             dz20             = _mm_sub_ps(iz2,jz0);
835
836             /* Calculate squared distance and things based on it */
837             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
838             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
839             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
840
841             rinv00           = gmx_mm_invsqrt_ps(rsq00);
842             rinv10           = gmx_mm_invsqrt_ps(rsq10);
843             rinv20           = gmx_mm_invsqrt_ps(rsq20);
844
845             rinvsq00         = _mm_mul_ps(rinv00,rinv00);
846             rinvsq10         = _mm_mul_ps(rinv10,rinv10);
847             rinvsq20         = _mm_mul_ps(rinv20,rinv20);
848
849             /* Load parameters for j particles */
850             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
851                                                               charge+jnrC+0,charge+jnrD+0);
852             vdwjidx0A        = 2*vdwtype[jnrA+0];
853             vdwjidx0B        = 2*vdwtype[jnrB+0];
854             vdwjidx0C        = 2*vdwtype[jnrC+0];
855             vdwjidx0D        = 2*vdwtype[jnrD+0];
856
857             /**************************
858              * CALCULATE INTERACTIONS *
859              **************************/
860
861             /* Compute parameters for interactions between i and j atoms */
862             qq00             = _mm_mul_ps(iq0,jq0);
863             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
864                                          vdwparam+vdwioffset0+vdwjidx0B,
865                                          vdwparam+vdwioffset0+vdwjidx0C,
866                                          vdwparam+vdwioffset0+vdwjidx0D,
867                                          &c6_00,&c12_00);
868
869             /* COULOMB ELECTROSTATICS */
870             velec            = _mm_mul_ps(qq00,rinv00);
871             felec            = _mm_mul_ps(velec,rinvsq00);
872
873             /* LENNARD-JONES DISPERSION/REPULSION */
874
875             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
876             fvdw             = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
877
878             fscal            = _mm_add_ps(felec,fvdw);
879
880             fscal            = _mm_andnot_ps(dummy_mask,fscal);
881
882             /* Calculate temporary vectorial force */
883             tx               = _mm_mul_ps(fscal,dx00);
884             ty               = _mm_mul_ps(fscal,dy00);
885             tz               = _mm_mul_ps(fscal,dz00);
886
887             /* Update vectorial force */
888             fix0             = _mm_add_ps(fix0,tx);
889             fiy0             = _mm_add_ps(fiy0,ty);
890             fiz0             = _mm_add_ps(fiz0,tz);
891
892             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
893                                                    f+j_coord_offsetC,f+j_coord_offsetD,
894                                                    tx,ty,tz);
895
896             /**************************
897              * CALCULATE INTERACTIONS *
898              **************************/
899
900             /* Compute parameters for interactions between i and j atoms */
901             qq10             = _mm_mul_ps(iq1,jq0);
902
903             /* COULOMB ELECTROSTATICS */
904             velec            = _mm_mul_ps(qq10,rinv10);
905             felec            = _mm_mul_ps(velec,rinvsq10);
906
907             fscal            = felec;
908
909             fscal            = _mm_andnot_ps(dummy_mask,fscal);
910
911             /* Calculate temporary vectorial force */
912             tx               = _mm_mul_ps(fscal,dx10);
913             ty               = _mm_mul_ps(fscal,dy10);
914             tz               = _mm_mul_ps(fscal,dz10);
915
916             /* Update vectorial force */
917             fix1             = _mm_add_ps(fix1,tx);
918             fiy1             = _mm_add_ps(fiy1,ty);
919             fiz1             = _mm_add_ps(fiz1,tz);
920
921             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
922                                                    f+j_coord_offsetC,f+j_coord_offsetD,
923                                                    tx,ty,tz);
924
925             /**************************
926              * CALCULATE INTERACTIONS *
927              **************************/
928
929             /* Compute parameters for interactions between i and j atoms */
930             qq20             = _mm_mul_ps(iq2,jq0);
931
932             /* COULOMB ELECTROSTATICS */
933             velec            = _mm_mul_ps(qq20,rinv20);
934             felec            = _mm_mul_ps(velec,rinvsq20);
935
936             fscal            = felec;
937
938             fscal            = _mm_andnot_ps(dummy_mask,fscal);
939
940             /* Calculate temporary vectorial force */
941             tx               = _mm_mul_ps(fscal,dx20);
942             ty               = _mm_mul_ps(fscal,dy20);
943             tz               = _mm_mul_ps(fscal,dz20);
944
945             /* Update vectorial force */
946             fix2             = _mm_add_ps(fix2,tx);
947             fiy2             = _mm_add_ps(fiy2,ty);
948             fiz2             = _mm_add_ps(fiz2,tz);
949
950             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
951                                                    f+j_coord_offsetC,f+j_coord_offsetD,
952                                                    tx,ty,tz);
953
954             /* Inner loop uses 88 flops */
955         }
956
957         /* End of innermost loop */
958
959         gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
960                                               f+i_coord_offset,fshift+i_shift_offset);
961
962         /* Increment number of inner iterations */
963         inneriter                  += j_index_end - j_index_start;
964
965         /* Outer loop uses 27 flops */
966     }
967
968     /* Increment number of outer iterations */
969     outeriter        += nri;
970
971     /* Update outer/inner flops */
972
973     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*27 + inneriter*88);
974 }