2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_sse2_single
38 * Electrostatics interaction: Coulomb
39 * VdW interaction: LennardJones
40 * Geometry: Water3-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
63 real shX,shY,shZ,rcutoff_scalar;
64 real *shiftvec,*fshift,*x,*f;
65 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
69 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
71 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
72 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
73 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
74 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
75 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
76 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
77 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
80 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
83 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
84 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
85 __m128 dummy_mask,cutoff_mask;
86 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
87 __m128 one = _mm_set1_ps(1.0);
88 __m128 two = _mm_set1_ps(2.0);
94 jindex = nlist->jindex;
96 shiftidx = nlist->shift;
98 shiftvec = fr->shift_vec[0];
99 fshift = fr->fshift[0];
100 facel = _mm_set1_ps(fr->epsfac);
101 charge = mdatoms->chargeA;
102 nvdwtype = fr->ntype;
104 vdwtype = mdatoms->typeA;
106 /* Setup water-specific parameters */
107 inr = nlist->iinr[0];
108 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
109 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
110 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
111 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
113 /* Avoid stupid compiler warnings */
114 jnrA = jnrB = jnrC = jnrD = 0;
123 /* Start outer loop over neighborlists */
124 for(iidx=0; iidx<nri; iidx++)
126 /* Load shift vector for this list */
127 i_shift_offset = DIM*shiftidx[iidx];
128 shX = shiftvec[i_shift_offset+XX];
129 shY = shiftvec[i_shift_offset+YY];
130 shZ = shiftvec[i_shift_offset+ZZ];
132 /* Load limits for loop over neighbors */
133 j_index_start = jindex[iidx];
134 j_index_end = jindex[iidx+1];
136 /* Get outer coordinate index */
138 i_coord_offset = DIM*inr;
140 /* Load i particle coords and add shift vector */
141 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
142 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
143 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
144 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
145 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
146 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
147 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
148 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
149 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
151 fix0 = _mm_setzero_ps();
152 fiy0 = _mm_setzero_ps();
153 fiz0 = _mm_setzero_ps();
154 fix1 = _mm_setzero_ps();
155 fiy1 = _mm_setzero_ps();
156 fiz1 = _mm_setzero_ps();
157 fix2 = _mm_setzero_ps();
158 fiy2 = _mm_setzero_ps();
159 fiz2 = _mm_setzero_ps();
161 /* Reset potential sums */
162 velecsum = _mm_setzero_ps();
163 vvdwsum = _mm_setzero_ps();
165 /* Start inner kernel loop */
166 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
169 /* Get j neighbor index, and coordinate index */
175 j_coord_offsetA = DIM*jnrA;
176 j_coord_offsetB = DIM*jnrB;
177 j_coord_offsetC = DIM*jnrC;
178 j_coord_offsetD = DIM*jnrD;
180 /* load j atom coordinates */
181 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
182 x+j_coord_offsetC,x+j_coord_offsetD,
185 /* Calculate displacement vector */
186 dx00 = _mm_sub_ps(ix0,jx0);
187 dy00 = _mm_sub_ps(iy0,jy0);
188 dz00 = _mm_sub_ps(iz0,jz0);
189 dx10 = _mm_sub_ps(ix1,jx0);
190 dy10 = _mm_sub_ps(iy1,jy0);
191 dz10 = _mm_sub_ps(iz1,jz0);
192 dx20 = _mm_sub_ps(ix2,jx0);
193 dy20 = _mm_sub_ps(iy2,jy0);
194 dz20 = _mm_sub_ps(iz2,jz0);
196 /* Calculate squared distance and things based on it */
197 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
198 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
199 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
201 rinv00 = gmx_mm_invsqrt_ps(rsq00);
202 rinv10 = gmx_mm_invsqrt_ps(rsq10);
203 rinv20 = gmx_mm_invsqrt_ps(rsq20);
205 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
206 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
207 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
209 /* Load parameters for j particles */
210 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
211 charge+jnrC+0,charge+jnrD+0);
212 vdwjidx0A = 2*vdwtype[jnrA+0];
213 vdwjidx0B = 2*vdwtype[jnrB+0];
214 vdwjidx0C = 2*vdwtype[jnrC+0];
215 vdwjidx0D = 2*vdwtype[jnrD+0];
217 /**************************
218 * CALCULATE INTERACTIONS *
219 **************************/
221 /* Compute parameters for interactions between i and j atoms */
222 qq00 = _mm_mul_ps(iq0,jq0);
223 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
224 vdwparam+vdwioffset0+vdwjidx0B,
225 vdwparam+vdwioffset0+vdwjidx0C,
226 vdwparam+vdwioffset0+vdwjidx0D,
229 /* COULOMB ELECTROSTATICS */
230 velec = _mm_mul_ps(qq00,rinv00);
231 felec = _mm_mul_ps(velec,rinvsq00);
233 /* LENNARD-JONES DISPERSION/REPULSION */
235 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
236 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
237 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
238 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
239 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
241 /* Update potential sum for this i atom from the interaction with this j atom. */
242 velecsum = _mm_add_ps(velecsum,velec);
243 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
245 fscal = _mm_add_ps(felec,fvdw);
247 /* Calculate temporary vectorial force */
248 tx = _mm_mul_ps(fscal,dx00);
249 ty = _mm_mul_ps(fscal,dy00);
250 tz = _mm_mul_ps(fscal,dz00);
252 /* Update vectorial force */
253 fix0 = _mm_add_ps(fix0,tx);
254 fiy0 = _mm_add_ps(fiy0,ty);
255 fiz0 = _mm_add_ps(fiz0,tz);
257 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
258 f+j_coord_offsetC,f+j_coord_offsetD,
261 /**************************
262 * CALCULATE INTERACTIONS *
263 **************************/
265 /* Compute parameters for interactions between i and j atoms */
266 qq10 = _mm_mul_ps(iq1,jq0);
268 /* COULOMB ELECTROSTATICS */
269 velec = _mm_mul_ps(qq10,rinv10);
270 felec = _mm_mul_ps(velec,rinvsq10);
272 /* Update potential sum for this i atom from the interaction with this j atom. */
273 velecsum = _mm_add_ps(velecsum,velec);
277 /* Calculate temporary vectorial force */
278 tx = _mm_mul_ps(fscal,dx10);
279 ty = _mm_mul_ps(fscal,dy10);
280 tz = _mm_mul_ps(fscal,dz10);
282 /* Update vectorial force */
283 fix1 = _mm_add_ps(fix1,tx);
284 fiy1 = _mm_add_ps(fiy1,ty);
285 fiz1 = _mm_add_ps(fiz1,tz);
287 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
288 f+j_coord_offsetC,f+j_coord_offsetD,
291 /**************************
292 * CALCULATE INTERACTIONS *
293 **************************/
295 /* Compute parameters for interactions between i and j atoms */
296 qq20 = _mm_mul_ps(iq2,jq0);
298 /* COULOMB ELECTROSTATICS */
299 velec = _mm_mul_ps(qq20,rinv20);
300 felec = _mm_mul_ps(velec,rinvsq20);
302 /* Update potential sum for this i atom from the interaction with this j atom. */
303 velecsum = _mm_add_ps(velecsum,velec);
307 /* Calculate temporary vectorial force */
308 tx = _mm_mul_ps(fscal,dx20);
309 ty = _mm_mul_ps(fscal,dy20);
310 tz = _mm_mul_ps(fscal,dz20);
312 /* Update vectorial force */
313 fix2 = _mm_add_ps(fix2,tx);
314 fiy2 = _mm_add_ps(fiy2,ty);
315 fiz2 = _mm_add_ps(fiz2,tz);
317 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
318 f+j_coord_offsetC,f+j_coord_offsetD,
321 /* Inner loop uses 96 flops */
327 /* Get j neighbor index, and coordinate index */
333 /* Sign of each element will be negative for non-real atoms.
334 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
335 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
337 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
338 jnrA = (jnrA>=0) ? jnrA : 0;
339 jnrB = (jnrB>=0) ? jnrB : 0;
340 jnrC = (jnrC>=0) ? jnrC : 0;
341 jnrD = (jnrD>=0) ? jnrD : 0;
343 j_coord_offsetA = DIM*jnrA;
344 j_coord_offsetB = DIM*jnrB;
345 j_coord_offsetC = DIM*jnrC;
346 j_coord_offsetD = DIM*jnrD;
348 /* load j atom coordinates */
349 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
350 x+j_coord_offsetC,x+j_coord_offsetD,
353 /* Calculate displacement vector */
354 dx00 = _mm_sub_ps(ix0,jx0);
355 dy00 = _mm_sub_ps(iy0,jy0);
356 dz00 = _mm_sub_ps(iz0,jz0);
357 dx10 = _mm_sub_ps(ix1,jx0);
358 dy10 = _mm_sub_ps(iy1,jy0);
359 dz10 = _mm_sub_ps(iz1,jz0);
360 dx20 = _mm_sub_ps(ix2,jx0);
361 dy20 = _mm_sub_ps(iy2,jy0);
362 dz20 = _mm_sub_ps(iz2,jz0);
364 /* Calculate squared distance and things based on it */
365 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
366 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
367 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
369 rinv00 = gmx_mm_invsqrt_ps(rsq00);
370 rinv10 = gmx_mm_invsqrt_ps(rsq10);
371 rinv20 = gmx_mm_invsqrt_ps(rsq20);
373 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
374 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
375 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
377 /* Load parameters for j particles */
378 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
379 charge+jnrC+0,charge+jnrD+0);
380 vdwjidx0A = 2*vdwtype[jnrA+0];
381 vdwjidx0B = 2*vdwtype[jnrB+0];
382 vdwjidx0C = 2*vdwtype[jnrC+0];
383 vdwjidx0D = 2*vdwtype[jnrD+0];
385 /**************************
386 * CALCULATE INTERACTIONS *
387 **************************/
389 /* Compute parameters for interactions between i and j atoms */
390 qq00 = _mm_mul_ps(iq0,jq0);
391 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
392 vdwparam+vdwioffset0+vdwjidx0B,
393 vdwparam+vdwioffset0+vdwjidx0C,
394 vdwparam+vdwioffset0+vdwjidx0D,
397 /* COULOMB ELECTROSTATICS */
398 velec = _mm_mul_ps(qq00,rinv00);
399 felec = _mm_mul_ps(velec,rinvsq00);
401 /* LENNARD-JONES DISPERSION/REPULSION */
403 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
404 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
405 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
406 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
407 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
409 /* Update potential sum for this i atom from the interaction with this j atom. */
410 velec = _mm_andnot_ps(dummy_mask,velec);
411 velecsum = _mm_add_ps(velecsum,velec);
412 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
413 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
415 fscal = _mm_add_ps(felec,fvdw);
417 fscal = _mm_andnot_ps(dummy_mask,fscal);
419 /* Calculate temporary vectorial force */
420 tx = _mm_mul_ps(fscal,dx00);
421 ty = _mm_mul_ps(fscal,dy00);
422 tz = _mm_mul_ps(fscal,dz00);
424 /* Update vectorial force */
425 fix0 = _mm_add_ps(fix0,tx);
426 fiy0 = _mm_add_ps(fiy0,ty);
427 fiz0 = _mm_add_ps(fiz0,tz);
429 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
430 f+j_coord_offsetC,f+j_coord_offsetD,
433 /**************************
434 * CALCULATE INTERACTIONS *
435 **************************/
437 /* Compute parameters for interactions between i and j atoms */
438 qq10 = _mm_mul_ps(iq1,jq0);
440 /* COULOMB ELECTROSTATICS */
441 velec = _mm_mul_ps(qq10,rinv10);
442 felec = _mm_mul_ps(velec,rinvsq10);
444 /* Update potential sum for this i atom from the interaction with this j atom. */
445 velec = _mm_andnot_ps(dummy_mask,velec);
446 velecsum = _mm_add_ps(velecsum,velec);
450 fscal = _mm_andnot_ps(dummy_mask,fscal);
452 /* Calculate temporary vectorial force */
453 tx = _mm_mul_ps(fscal,dx10);
454 ty = _mm_mul_ps(fscal,dy10);
455 tz = _mm_mul_ps(fscal,dz10);
457 /* Update vectorial force */
458 fix1 = _mm_add_ps(fix1,tx);
459 fiy1 = _mm_add_ps(fiy1,ty);
460 fiz1 = _mm_add_ps(fiz1,tz);
462 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
463 f+j_coord_offsetC,f+j_coord_offsetD,
466 /**************************
467 * CALCULATE INTERACTIONS *
468 **************************/
470 /* Compute parameters for interactions between i and j atoms */
471 qq20 = _mm_mul_ps(iq2,jq0);
473 /* COULOMB ELECTROSTATICS */
474 velec = _mm_mul_ps(qq20,rinv20);
475 felec = _mm_mul_ps(velec,rinvsq20);
477 /* Update potential sum for this i atom from the interaction with this j atom. */
478 velec = _mm_andnot_ps(dummy_mask,velec);
479 velecsum = _mm_add_ps(velecsum,velec);
483 fscal = _mm_andnot_ps(dummy_mask,fscal);
485 /* Calculate temporary vectorial force */
486 tx = _mm_mul_ps(fscal,dx20);
487 ty = _mm_mul_ps(fscal,dy20);
488 tz = _mm_mul_ps(fscal,dz20);
490 /* Update vectorial force */
491 fix2 = _mm_add_ps(fix2,tx);
492 fiy2 = _mm_add_ps(fiy2,ty);
493 fiz2 = _mm_add_ps(fiz2,tz);
495 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
496 f+j_coord_offsetC,f+j_coord_offsetD,
499 /* Inner loop uses 96 flops */
502 /* End of innermost loop */
504 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
505 f+i_coord_offset,fshift+i_shift_offset);
508 /* Update potential energies */
509 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
510 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
512 /* Increment number of inner iterations */
513 inneriter += j_index_end - j_index_start;
515 /* Outer loop uses 29 flops */
518 /* Increment number of outer iterations */
521 /* Update outer/inner flops */
523 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*29 + inneriter*96);
526 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_sse2_single
527 * Electrostatics interaction: Coulomb
528 * VdW interaction: LennardJones
529 * Geometry: Water3-Particle
530 * Calculate force/pot: Force
533 nb_kernel_ElecCoul_VdwLJ_GeomW3P1_F_sse2_single
534 (t_nblist * gmx_restrict nlist,
535 rvec * gmx_restrict xx,
536 rvec * gmx_restrict ff,
537 t_forcerec * gmx_restrict fr,
538 t_mdatoms * gmx_restrict mdatoms,
539 nb_kernel_data_t * gmx_restrict kernel_data,
540 t_nrnb * gmx_restrict nrnb)
542 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
543 * just 0 for non-waters.
544 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
545 * jnr indices corresponding to data put in the four positions in the SIMD register.
547 int i_shift_offset,i_coord_offset,outeriter,inneriter;
548 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
549 int jnrA,jnrB,jnrC,jnrD;
550 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
551 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
552 real shX,shY,shZ,rcutoff_scalar;
553 real *shiftvec,*fshift,*x,*f;
554 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
556 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
558 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
560 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
561 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
562 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
563 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
564 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
565 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
566 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
569 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
572 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
573 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
574 __m128 dummy_mask,cutoff_mask;
575 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
576 __m128 one = _mm_set1_ps(1.0);
577 __m128 two = _mm_set1_ps(2.0);
583 jindex = nlist->jindex;
585 shiftidx = nlist->shift;
587 shiftvec = fr->shift_vec[0];
588 fshift = fr->fshift[0];
589 facel = _mm_set1_ps(fr->epsfac);
590 charge = mdatoms->chargeA;
591 nvdwtype = fr->ntype;
593 vdwtype = mdatoms->typeA;
595 /* Setup water-specific parameters */
596 inr = nlist->iinr[0];
597 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
598 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
599 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
600 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
602 /* Avoid stupid compiler warnings */
603 jnrA = jnrB = jnrC = jnrD = 0;
612 /* Start outer loop over neighborlists */
613 for(iidx=0; iidx<nri; iidx++)
615 /* Load shift vector for this list */
616 i_shift_offset = DIM*shiftidx[iidx];
617 shX = shiftvec[i_shift_offset+XX];
618 shY = shiftvec[i_shift_offset+YY];
619 shZ = shiftvec[i_shift_offset+ZZ];
621 /* Load limits for loop over neighbors */
622 j_index_start = jindex[iidx];
623 j_index_end = jindex[iidx+1];
625 /* Get outer coordinate index */
627 i_coord_offset = DIM*inr;
629 /* Load i particle coords and add shift vector */
630 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
631 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
632 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
633 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
634 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
635 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
636 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
637 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
638 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
640 fix0 = _mm_setzero_ps();
641 fiy0 = _mm_setzero_ps();
642 fiz0 = _mm_setzero_ps();
643 fix1 = _mm_setzero_ps();
644 fiy1 = _mm_setzero_ps();
645 fiz1 = _mm_setzero_ps();
646 fix2 = _mm_setzero_ps();
647 fiy2 = _mm_setzero_ps();
648 fiz2 = _mm_setzero_ps();
650 /* Start inner kernel loop */
651 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
654 /* Get j neighbor index, and coordinate index */
660 j_coord_offsetA = DIM*jnrA;
661 j_coord_offsetB = DIM*jnrB;
662 j_coord_offsetC = DIM*jnrC;
663 j_coord_offsetD = DIM*jnrD;
665 /* load j atom coordinates */
666 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
667 x+j_coord_offsetC,x+j_coord_offsetD,
670 /* Calculate displacement vector */
671 dx00 = _mm_sub_ps(ix0,jx0);
672 dy00 = _mm_sub_ps(iy0,jy0);
673 dz00 = _mm_sub_ps(iz0,jz0);
674 dx10 = _mm_sub_ps(ix1,jx0);
675 dy10 = _mm_sub_ps(iy1,jy0);
676 dz10 = _mm_sub_ps(iz1,jz0);
677 dx20 = _mm_sub_ps(ix2,jx0);
678 dy20 = _mm_sub_ps(iy2,jy0);
679 dz20 = _mm_sub_ps(iz2,jz0);
681 /* Calculate squared distance and things based on it */
682 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
683 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
684 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
686 rinv00 = gmx_mm_invsqrt_ps(rsq00);
687 rinv10 = gmx_mm_invsqrt_ps(rsq10);
688 rinv20 = gmx_mm_invsqrt_ps(rsq20);
690 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
691 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
692 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
694 /* Load parameters for j particles */
695 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
696 charge+jnrC+0,charge+jnrD+0);
697 vdwjidx0A = 2*vdwtype[jnrA+0];
698 vdwjidx0B = 2*vdwtype[jnrB+0];
699 vdwjidx0C = 2*vdwtype[jnrC+0];
700 vdwjidx0D = 2*vdwtype[jnrD+0];
702 /**************************
703 * CALCULATE INTERACTIONS *
704 **************************/
706 /* Compute parameters for interactions between i and j atoms */
707 qq00 = _mm_mul_ps(iq0,jq0);
708 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
709 vdwparam+vdwioffset0+vdwjidx0B,
710 vdwparam+vdwioffset0+vdwjidx0C,
711 vdwparam+vdwioffset0+vdwjidx0D,
714 /* COULOMB ELECTROSTATICS */
715 velec = _mm_mul_ps(qq00,rinv00);
716 felec = _mm_mul_ps(velec,rinvsq00);
718 /* LENNARD-JONES DISPERSION/REPULSION */
720 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
721 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
723 fscal = _mm_add_ps(felec,fvdw);
725 /* Calculate temporary vectorial force */
726 tx = _mm_mul_ps(fscal,dx00);
727 ty = _mm_mul_ps(fscal,dy00);
728 tz = _mm_mul_ps(fscal,dz00);
730 /* Update vectorial force */
731 fix0 = _mm_add_ps(fix0,tx);
732 fiy0 = _mm_add_ps(fiy0,ty);
733 fiz0 = _mm_add_ps(fiz0,tz);
735 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
736 f+j_coord_offsetC,f+j_coord_offsetD,
739 /**************************
740 * CALCULATE INTERACTIONS *
741 **************************/
743 /* Compute parameters for interactions between i and j atoms */
744 qq10 = _mm_mul_ps(iq1,jq0);
746 /* COULOMB ELECTROSTATICS */
747 velec = _mm_mul_ps(qq10,rinv10);
748 felec = _mm_mul_ps(velec,rinvsq10);
752 /* Calculate temporary vectorial force */
753 tx = _mm_mul_ps(fscal,dx10);
754 ty = _mm_mul_ps(fscal,dy10);
755 tz = _mm_mul_ps(fscal,dz10);
757 /* Update vectorial force */
758 fix1 = _mm_add_ps(fix1,tx);
759 fiy1 = _mm_add_ps(fiy1,ty);
760 fiz1 = _mm_add_ps(fiz1,tz);
762 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
763 f+j_coord_offsetC,f+j_coord_offsetD,
766 /**************************
767 * CALCULATE INTERACTIONS *
768 **************************/
770 /* Compute parameters for interactions between i and j atoms */
771 qq20 = _mm_mul_ps(iq2,jq0);
773 /* COULOMB ELECTROSTATICS */
774 velec = _mm_mul_ps(qq20,rinv20);
775 felec = _mm_mul_ps(velec,rinvsq20);
779 /* Calculate temporary vectorial force */
780 tx = _mm_mul_ps(fscal,dx20);
781 ty = _mm_mul_ps(fscal,dy20);
782 tz = _mm_mul_ps(fscal,dz20);
784 /* Update vectorial force */
785 fix2 = _mm_add_ps(fix2,tx);
786 fiy2 = _mm_add_ps(fiy2,ty);
787 fiz2 = _mm_add_ps(fiz2,tz);
789 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
790 f+j_coord_offsetC,f+j_coord_offsetD,
793 /* Inner loop uses 88 flops */
799 /* Get j neighbor index, and coordinate index */
805 /* Sign of each element will be negative for non-real atoms.
806 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
807 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
809 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
810 jnrA = (jnrA>=0) ? jnrA : 0;
811 jnrB = (jnrB>=0) ? jnrB : 0;
812 jnrC = (jnrC>=0) ? jnrC : 0;
813 jnrD = (jnrD>=0) ? jnrD : 0;
815 j_coord_offsetA = DIM*jnrA;
816 j_coord_offsetB = DIM*jnrB;
817 j_coord_offsetC = DIM*jnrC;
818 j_coord_offsetD = DIM*jnrD;
820 /* load j atom coordinates */
821 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
822 x+j_coord_offsetC,x+j_coord_offsetD,
825 /* Calculate displacement vector */
826 dx00 = _mm_sub_ps(ix0,jx0);
827 dy00 = _mm_sub_ps(iy0,jy0);
828 dz00 = _mm_sub_ps(iz0,jz0);
829 dx10 = _mm_sub_ps(ix1,jx0);
830 dy10 = _mm_sub_ps(iy1,jy0);
831 dz10 = _mm_sub_ps(iz1,jz0);
832 dx20 = _mm_sub_ps(ix2,jx0);
833 dy20 = _mm_sub_ps(iy2,jy0);
834 dz20 = _mm_sub_ps(iz2,jz0);
836 /* Calculate squared distance and things based on it */
837 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
838 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
839 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
841 rinv00 = gmx_mm_invsqrt_ps(rsq00);
842 rinv10 = gmx_mm_invsqrt_ps(rsq10);
843 rinv20 = gmx_mm_invsqrt_ps(rsq20);
845 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
846 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
847 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
849 /* Load parameters for j particles */
850 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
851 charge+jnrC+0,charge+jnrD+0);
852 vdwjidx0A = 2*vdwtype[jnrA+0];
853 vdwjidx0B = 2*vdwtype[jnrB+0];
854 vdwjidx0C = 2*vdwtype[jnrC+0];
855 vdwjidx0D = 2*vdwtype[jnrD+0];
857 /**************************
858 * CALCULATE INTERACTIONS *
859 **************************/
861 /* Compute parameters for interactions between i and j atoms */
862 qq00 = _mm_mul_ps(iq0,jq0);
863 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
864 vdwparam+vdwioffset0+vdwjidx0B,
865 vdwparam+vdwioffset0+vdwjidx0C,
866 vdwparam+vdwioffset0+vdwjidx0D,
869 /* COULOMB ELECTROSTATICS */
870 velec = _mm_mul_ps(qq00,rinv00);
871 felec = _mm_mul_ps(velec,rinvsq00);
873 /* LENNARD-JONES DISPERSION/REPULSION */
875 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
876 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
878 fscal = _mm_add_ps(felec,fvdw);
880 fscal = _mm_andnot_ps(dummy_mask,fscal);
882 /* Calculate temporary vectorial force */
883 tx = _mm_mul_ps(fscal,dx00);
884 ty = _mm_mul_ps(fscal,dy00);
885 tz = _mm_mul_ps(fscal,dz00);
887 /* Update vectorial force */
888 fix0 = _mm_add_ps(fix0,tx);
889 fiy0 = _mm_add_ps(fiy0,ty);
890 fiz0 = _mm_add_ps(fiz0,tz);
892 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
893 f+j_coord_offsetC,f+j_coord_offsetD,
896 /**************************
897 * CALCULATE INTERACTIONS *
898 **************************/
900 /* Compute parameters for interactions between i and j atoms */
901 qq10 = _mm_mul_ps(iq1,jq0);
903 /* COULOMB ELECTROSTATICS */
904 velec = _mm_mul_ps(qq10,rinv10);
905 felec = _mm_mul_ps(velec,rinvsq10);
909 fscal = _mm_andnot_ps(dummy_mask,fscal);
911 /* Calculate temporary vectorial force */
912 tx = _mm_mul_ps(fscal,dx10);
913 ty = _mm_mul_ps(fscal,dy10);
914 tz = _mm_mul_ps(fscal,dz10);
916 /* Update vectorial force */
917 fix1 = _mm_add_ps(fix1,tx);
918 fiy1 = _mm_add_ps(fiy1,ty);
919 fiz1 = _mm_add_ps(fiz1,tz);
921 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
922 f+j_coord_offsetC,f+j_coord_offsetD,
925 /**************************
926 * CALCULATE INTERACTIONS *
927 **************************/
929 /* Compute parameters for interactions between i and j atoms */
930 qq20 = _mm_mul_ps(iq2,jq0);
932 /* COULOMB ELECTROSTATICS */
933 velec = _mm_mul_ps(qq20,rinv20);
934 felec = _mm_mul_ps(velec,rinvsq20);
938 fscal = _mm_andnot_ps(dummy_mask,fscal);
940 /* Calculate temporary vectorial force */
941 tx = _mm_mul_ps(fscal,dx20);
942 ty = _mm_mul_ps(fscal,dy20);
943 tz = _mm_mul_ps(fscal,dz20);
945 /* Update vectorial force */
946 fix2 = _mm_add_ps(fix2,tx);
947 fiy2 = _mm_add_ps(fiy2,ty);
948 fiz2 = _mm_add_ps(fiz2,tz);
950 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
951 f+j_coord_offsetC,f+j_coord_offsetD,
954 /* Inner loop uses 88 flops */
957 /* End of innermost loop */
959 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
960 f+i_coord_offset,fshift+i_shift_offset);
962 /* Increment number of inner iterations */
963 inneriter += j_index_end - j_index_start;
965 /* Outer loop uses 27 flops */
968 /* Increment number of outer iterations */
971 /* Update outer/inner flops */
973 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*27 + inneriter*88);