2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
38 * Electrostatics interaction: CubicSplineTable
39 * VdW interaction: LennardJones
40 * Geometry: Water4-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
76 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
77 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
78 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
79 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
80 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
81 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
82 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
83 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
86 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
89 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
90 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
92 __m128i ifour = _mm_set1_epi32(4);
93 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
95 __m128 dummy_mask,cutoff_mask;
96 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
97 __m128 one = _mm_set1_ps(1.0);
98 __m128 two = _mm_set1_ps(2.0);
104 jindex = nlist->jindex;
106 shiftidx = nlist->shift;
108 shiftvec = fr->shift_vec[0];
109 fshift = fr->fshift[0];
110 facel = _mm_set1_ps(fr->epsfac);
111 charge = mdatoms->chargeA;
112 nvdwtype = fr->ntype;
114 vdwtype = mdatoms->typeA;
116 vftab = kernel_data->table_elec->data;
117 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
119 /* Setup water-specific parameters */
120 inr = nlist->iinr[0];
121 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
122 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
123 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
124 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
126 /* Avoid stupid compiler warnings */
127 jnrA = jnrB = jnrC = jnrD = 0;
136 for(iidx=0;iidx<4*DIM;iidx++)
141 /* Start outer loop over neighborlists */
142 for(iidx=0; iidx<nri; iidx++)
144 /* Load shift vector for this list */
145 i_shift_offset = DIM*shiftidx[iidx];
147 /* Load limits for loop over neighbors */
148 j_index_start = jindex[iidx];
149 j_index_end = jindex[iidx+1];
151 /* Get outer coordinate index */
153 i_coord_offset = DIM*inr;
155 /* Load i particle coords and add shift vector */
156 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
157 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
159 fix0 = _mm_setzero_ps();
160 fiy0 = _mm_setzero_ps();
161 fiz0 = _mm_setzero_ps();
162 fix1 = _mm_setzero_ps();
163 fiy1 = _mm_setzero_ps();
164 fiz1 = _mm_setzero_ps();
165 fix2 = _mm_setzero_ps();
166 fiy2 = _mm_setzero_ps();
167 fiz2 = _mm_setzero_ps();
168 fix3 = _mm_setzero_ps();
169 fiy3 = _mm_setzero_ps();
170 fiz3 = _mm_setzero_ps();
172 /* Reset potential sums */
173 velecsum = _mm_setzero_ps();
174 vvdwsum = _mm_setzero_ps();
176 /* Start inner kernel loop */
177 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
180 /* Get j neighbor index, and coordinate index */
185 j_coord_offsetA = DIM*jnrA;
186 j_coord_offsetB = DIM*jnrB;
187 j_coord_offsetC = DIM*jnrC;
188 j_coord_offsetD = DIM*jnrD;
190 /* load j atom coordinates */
191 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
192 x+j_coord_offsetC,x+j_coord_offsetD,
195 /* Calculate displacement vector */
196 dx00 = _mm_sub_ps(ix0,jx0);
197 dy00 = _mm_sub_ps(iy0,jy0);
198 dz00 = _mm_sub_ps(iz0,jz0);
199 dx10 = _mm_sub_ps(ix1,jx0);
200 dy10 = _mm_sub_ps(iy1,jy0);
201 dz10 = _mm_sub_ps(iz1,jz0);
202 dx20 = _mm_sub_ps(ix2,jx0);
203 dy20 = _mm_sub_ps(iy2,jy0);
204 dz20 = _mm_sub_ps(iz2,jz0);
205 dx30 = _mm_sub_ps(ix3,jx0);
206 dy30 = _mm_sub_ps(iy3,jy0);
207 dz30 = _mm_sub_ps(iz3,jz0);
209 /* Calculate squared distance and things based on it */
210 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
211 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
212 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
213 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
215 rinv10 = gmx_mm_invsqrt_ps(rsq10);
216 rinv20 = gmx_mm_invsqrt_ps(rsq20);
217 rinv30 = gmx_mm_invsqrt_ps(rsq30);
219 rinvsq00 = gmx_mm_inv_ps(rsq00);
221 /* Load parameters for j particles */
222 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
223 charge+jnrC+0,charge+jnrD+0);
224 vdwjidx0A = 2*vdwtype[jnrA+0];
225 vdwjidx0B = 2*vdwtype[jnrB+0];
226 vdwjidx0C = 2*vdwtype[jnrC+0];
227 vdwjidx0D = 2*vdwtype[jnrD+0];
229 /**************************
230 * CALCULATE INTERACTIONS *
231 **************************/
233 /* Compute parameters for interactions between i and j atoms */
234 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
235 vdwparam+vdwioffset0+vdwjidx0B,
236 vdwparam+vdwioffset0+vdwjidx0C,
237 vdwparam+vdwioffset0+vdwjidx0D,
240 /* LENNARD-JONES DISPERSION/REPULSION */
242 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
243 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
244 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
245 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
246 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
248 /* Update potential sum for this i atom from the interaction with this j atom. */
249 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
253 /* Calculate temporary vectorial force */
254 tx = _mm_mul_ps(fscal,dx00);
255 ty = _mm_mul_ps(fscal,dy00);
256 tz = _mm_mul_ps(fscal,dz00);
258 /* Update vectorial force */
259 fix0 = _mm_add_ps(fix0,tx);
260 fiy0 = _mm_add_ps(fiy0,ty);
261 fiz0 = _mm_add_ps(fiz0,tz);
263 fjptrA = f+j_coord_offsetA;
264 fjptrB = f+j_coord_offsetB;
265 fjptrC = f+j_coord_offsetC;
266 fjptrD = f+j_coord_offsetD;
267 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
269 /**************************
270 * CALCULATE INTERACTIONS *
271 **************************/
273 r10 = _mm_mul_ps(rsq10,rinv10);
275 /* Compute parameters for interactions between i and j atoms */
276 qq10 = _mm_mul_ps(iq1,jq0);
278 /* Calculate table index by multiplying r with table scale and truncate to integer */
279 rt = _mm_mul_ps(r10,vftabscale);
280 vfitab = _mm_cvttps_epi32(rt);
281 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
282 vfitab = _mm_slli_epi32(vfitab,2);
284 /* CUBIC SPLINE TABLE ELECTROSTATICS */
285 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
286 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
287 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
288 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
289 _MM_TRANSPOSE4_PS(Y,F,G,H);
290 Heps = _mm_mul_ps(vfeps,H);
291 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
292 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
293 velec = _mm_mul_ps(qq10,VV);
294 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
295 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
297 /* Update potential sum for this i atom from the interaction with this j atom. */
298 velecsum = _mm_add_ps(velecsum,velec);
302 /* Calculate temporary vectorial force */
303 tx = _mm_mul_ps(fscal,dx10);
304 ty = _mm_mul_ps(fscal,dy10);
305 tz = _mm_mul_ps(fscal,dz10);
307 /* Update vectorial force */
308 fix1 = _mm_add_ps(fix1,tx);
309 fiy1 = _mm_add_ps(fiy1,ty);
310 fiz1 = _mm_add_ps(fiz1,tz);
312 fjptrA = f+j_coord_offsetA;
313 fjptrB = f+j_coord_offsetB;
314 fjptrC = f+j_coord_offsetC;
315 fjptrD = f+j_coord_offsetD;
316 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
318 /**************************
319 * CALCULATE INTERACTIONS *
320 **************************/
322 r20 = _mm_mul_ps(rsq20,rinv20);
324 /* Compute parameters for interactions between i and j atoms */
325 qq20 = _mm_mul_ps(iq2,jq0);
327 /* Calculate table index by multiplying r with table scale and truncate to integer */
328 rt = _mm_mul_ps(r20,vftabscale);
329 vfitab = _mm_cvttps_epi32(rt);
330 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
331 vfitab = _mm_slli_epi32(vfitab,2);
333 /* CUBIC SPLINE TABLE ELECTROSTATICS */
334 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
335 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
336 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
337 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
338 _MM_TRANSPOSE4_PS(Y,F,G,H);
339 Heps = _mm_mul_ps(vfeps,H);
340 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
341 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
342 velec = _mm_mul_ps(qq20,VV);
343 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
344 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
346 /* Update potential sum for this i atom from the interaction with this j atom. */
347 velecsum = _mm_add_ps(velecsum,velec);
351 /* Calculate temporary vectorial force */
352 tx = _mm_mul_ps(fscal,dx20);
353 ty = _mm_mul_ps(fscal,dy20);
354 tz = _mm_mul_ps(fscal,dz20);
356 /* Update vectorial force */
357 fix2 = _mm_add_ps(fix2,tx);
358 fiy2 = _mm_add_ps(fiy2,ty);
359 fiz2 = _mm_add_ps(fiz2,tz);
361 fjptrA = f+j_coord_offsetA;
362 fjptrB = f+j_coord_offsetB;
363 fjptrC = f+j_coord_offsetC;
364 fjptrD = f+j_coord_offsetD;
365 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
367 /**************************
368 * CALCULATE INTERACTIONS *
369 **************************/
371 r30 = _mm_mul_ps(rsq30,rinv30);
373 /* Compute parameters for interactions between i and j atoms */
374 qq30 = _mm_mul_ps(iq3,jq0);
376 /* Calculate table index by multiplying r with table scale and truncate to integer */
377 rt = _mm_mul_ps(r30,vftabscale);
378 vfitab = _mm_cvttps_epi32(rt);
379 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
380 vfitab = _mm_slli_epi32(vfitab,2);
382 /* CUBIC SPLINE TABLE ELECTROSTATICS */
383 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
384 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
385 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
386 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
387 _MM_TRANSPOSE4_PS(Y,F,G,H);
388 Heps = _mm_mul_ps(vfeps,H);
389 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
390 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
391 velec = _mm_mul_ps(qq30,VV);
392 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
393 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
395 /* Update potential sum for this i atom from the interaction with this j atom. */
396 velecsum = _mm_add_ps(velecsum,velec);
400 /* Calculate temporary vectorial force */
401 tx = _mm_mul_ps(fscal,dx30);
402 ty = _mm_mul_ps(fscal,dy30);
403 tz = _mm_mul_ps(fscal,dz30);
405 /* Update vectorial force */
406 fix3 = _mm_add_ps(fix3,tx);
407 fiy3 = _mm_add_ps(fiy3,ty);
408 fiz3 = _mm_add_ps(fiz3,tz);
410 fjptrA = f+j_coord_offsetA;
411 fjptrB = f+j_coord_offsetB;
412 fjptrC = f+j_coord_offsetC;
413 fjptrD = f+j_coord_offsetD;
414 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
416 /* Inner loop uses 161 flops */
422 /* Get j neighbor index, and coordinate index */
423 jnrlistA = jjnr[jidx];
424 jnrlistB = jjnr[jidx+1];
425 jnrlistC = jjnr[jidx+2];
426 jnrlistD = jjnr[jidx+3];
427 /* Sign of each element will be negative for non-real atoms.
428 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
429 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
431 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
432 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
433 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
434 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
435 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
436 j_coord_offsetA = DIM*jnrA;
437 j_coord_offsetB = DIM*jnrB;
438 j_coord_offsetC = DIM*jnrC;
439 j_coord_offsetD = DIM*jnrD;
441 /* load j atom coordinates */
442 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
443 x+j_coord_offsetC,x+j_coord_offsetD,
446 /* Calculate displacement vector */
447 dx00 = _mm_sub_ps(ix0,jx0);
448 dy00 = _mm_sub_ps(iy0,jy0);
449 dz00 = _mm_sub_ps(iz0,jz0);
450 dx10 = _mm_sub_ps(ix1,jx0);
451 dy10 = _mm_sub_ps(iy1,jy0);
452 dz10 = _mm_sub_ps(iz1,jz0);
453 dx20 = _mm_sub_ps(ix2,jx0);
454 dy20 = _mm_sub_ps(iy2,jy0);
455 dz20 = _mm_sub_ps(iz2,jz0);
456 dx30 = _mm_sub_ps(ix3,jx0);
457 dy30 = _mm_sub_ps(iy3,jy0);
458 dz30 = _mm_sub_ps(iz3,jz0);
460 /* Calculate squared distance and things based on it */
461 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
462 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
463 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
464 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
466 rinv10 = gmx_mm_invsqrt_ps(rsq10);
467 rinv20 = gmx_mm_invsqrt_ps(rsq20);
468 rinv30 = gmx_mm_invsqrt_ps(rsq30);
470 rinvsq00 = gmx_mm_inv_ps(rsq00);
472 /* Load parameters for j particles */
473 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
474 charge+jnrC+0,charge+jnrD+0);
475 vdwjidx0A = 2*vdwtype[jnrA+0];
476 vdwjidx0B = 2*vdwtype[jnrB+0];
477 vdwjidx0C = 2*vdwtype[jnrC+0];
478 vdwjidx0D = 2*vdwtype[jnrD+0];
480 /**************************
481 * CALCULATE INTERACTIONS *
482 **************************/
484 /* Compute parameters for interactions between i and j atoms */
485 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
486 vdwparam+vdwioffset0+vdwjidx0B,
487 vdwparam+vdwioffset0+vdwjidx0C,
488 vdwparam+vdwioffset0+vdwjidx0D,
491 /* LENNARD-JONES DISPERSION/REPULSION */
493 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
494 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
495 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
496 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
497 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
499 /* Update potential sum for this i atom from the interaction with this j atom. */
500 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
501 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
505 fscal = _mm_andnot_ps(dummy_mask,fscal);
507 /* Calculate temporary vectorial force */
508 tx = _mm_mul_ps(fscal,dx00);
509 ty = _mm_mul_ps(fscal,dy00);
510 tz = _mm_mul_ps(fscal,dz00);
512 /* Update vectorial force */
513 fix0 = _mm_add_ps(fix0,tx);
514 fiy0 = _mm_add_ps(fiy0,ty);
515 fiz0 = _mm_add_ps(fiz0,tz);
517 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
518 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
519 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
520 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
521 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
523 /**************************
524 * CALCULATE INTERACTIONS *
525 **************************/
527 r10 = _mm_mul_ps(rsq10,rinv10);
528 r10 = _mm_andnot_ps(dummy_mask,r10);
530 /* Compute parameters for interactions between i and j atoms */
531 qq10 = _mm_mul_ps(iq1,jq0);
533 /* Calculate table index by multiplying r with table scale and truncate to integer */
534 rt = _mm_mul_ps(r10,vftabscale);
535 vfitab = _mm_cvttps_epi32(rt);
536 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
537 vfitab = _mm_slli_epi32(vfitab,2);
539 /* CUBIC SPLINE TABLE ELECTROSTATICS */
540 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
541 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
542 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
543 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
544 _MM_TRANSPOSE4_PS(Y,F,G,H);
545 Heps = _mm_mul_ps(vfeps,H);
546 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
547 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
548 velec = _mm_mul_ps(qq10,VV);
549 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
550 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
552 /* Update potential sum for this i atom from the interaction with this j atom. */
553 velec = _mm_andnot_ps(dummy_mask,velec);
554 velecsum = _mm_add_ps(velecsum,velec);
558 fscal = _mm_andnot_ps(dummy_mask,fscal);
560 /* Calculate temporary vectorial force */
561 tx = _mm_mul_ps(fscal,dx10);
562 ty = _mm_mul_ps(fscal,dy10);
563 tz = _mm_mul_ps(fscal,dz10);
565 /* Update vectorial force */
566 fix1 = _mm_add_ps(fix1,tx);
567 fiy1 = _mm_add_ps(fiy1,ty);
568 fiz1 = _mm_add_ps(fiz1,tz);
570 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
571 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
572 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
573 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
574 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
576 /**************************
577 * CALCULATE INTERACTIONS *
578 **************************/
580 r20 = _mm_mul_ps(rsq20,rinv20);
581 r20 = _mm_andnot_ps(dummy_mask,r20);
583 /* Compute parameters for interactions between i and j atoms */
584 qq20 = _mm_mul_ps(iq2,jq0);
586 /* Calculate table index by multiplying r with table scale and truncate to integer */
587 rt = _mm_mul_ps(r20,vftabscale);
588 vfitab = _mm_cvttps_epi32(rt);
589 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
590 vfitab = _mm_slli_epi32(vfitab,2);
592 /* CUBIC SPLINE TABLE ELECTROSTATICS */
593 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
594 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
595 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
596 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
597 _MM_TRANSPOSE4_PS(Y,F,G,H);
598 Heps = _mm_mul_ps(vfeps,H);
599 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
600 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
601 velec = _mm_mul_ps(qq20,VV);
602 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
603 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
605 /* Update potential sum for this i atom from the interaction with this j atom. */
606 velec = _mm_andnot_ps(dummy_mask,velec);
607 velecsum = _mm_add_ps(velecsum,velec);
611 fscal = _mm_andnot_ps(dummy_mask,fscal);
613 /* Calculate temporary vectorial force */
614 tx = _mm_mul_ps(fscal,dx20);
615 ty = _mm_mul_ps(fscal,dy20);
616 tz = _mm_mul_ps(fscal,dz20);
618 /* Update vectorial force */
619 fix2 = _mm_add_ps(fix2,tx);
620 fiy2 = _mm_add_ps(fiy2,ty);
621 fiz2 = _mm_add_ps(fiz2,tz);
623 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
624 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
625 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
626 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
627 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
629 /**************************
630 * CALCULATE INTERACTIONS *
631 **************************/
633 r30 = _mm_mul_ps(rsq30,rinv30);
634 r30 = _mm_andnot_ps(dummy_mask,r30);
636 /* Compute parameters for interactions between i and j atoms */
637 qq30 = _mm_mul_ps(iq3,jq0);
639 /* Calculate table index by multiplying r with table scale and truncate to integer */
640 rt = _mm_mul_ps(r30,vftabscale);
641 vfitab = _mm_cvttps_epi32(rt);
642 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
643 vfitab = _mm_slli_epi32(vfitab,2);
645 /* CUBIC SPLINE TABLE ELECTROSTATICS */
646 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
647 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
648 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
649 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
650 _MM_TRANSPOSE4_PS(Y,F,G,H);
651 Heps = _mm_mul_ps(vfeps,H);
652 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
653 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
654 velec = _mm_mul_ps(qq30,VV);
655 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
656 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
658 /* Update potential sum for this i atom from the interaction with this j atom. */
659 velec = _mm_andnot_ps(dummy_mask,velec);
660 velecsum = _mm_add_ps(velecsum,velec);
664 fscal = _mm_andnot_ps(dummy_mask,fscal);
666 /* Calculate temporary vectorial force */
667 tx = _mm_mul_ps(fscal,dx30);
668 ty = _mm_mul_ps(fscal,dy30);
669 tz = _mm_mul_ps(fscal,dz30);
671 /* Update vectorial force */
672 fix3 = _mm_add_ps(fix3,tx);
673 fiy3 = _mm_add_ps(fiy3,ty);
674 fiz3 = _mm_add_ps(fiz3,tz);
676 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
677 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
678 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
679 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
680 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
682 /* Inner loop uses 164 flops */
685 /* End of innermost loop */
687 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
688 f+i_coord_offset,fshift+i_shift_offset);
691 /* Update potential energies */
692 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
693 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
695 /* Increment number of inner iterations */
696 inneriter += j_index_end - j_index_start;
698 /* Outer loop uses 26 flops */
701 /* Increment number of outer iterations */
704 /* Update outer/inner flops */
706 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*164);
709 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
710 * Electrostatics interaction: CubicSplineTable
711 * VdW interaction: LennardJones
712 * Geometry: Water4-Particle
713 * Calculate force/pot: Force
716 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
717 (t_nblist * gmx_restrict nlist,
718 rvec * gmx_restrict xx,
719 rvec * gmx_restrict ff,
720 t_forcerec * gmx_restrict fr,
721 t_mdatoms * gmx_restrict mdatoms,
722 nb_kernel_data_t * gmx_restrict kernel_data,
723 t_nrnb * gmx_restrict nrnb)
725 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
726 * just 0 for non-waters.
727 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
728 * jnr indices corresponding to data put in the four positions in the SIMD register.
730 int i_shift_offset,i_coord_offset,outeriter,inneriter;
731 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
732 int jnrA,jnrB,jnrC,jnrD;
733 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
734 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
735 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
737 real *shiftvec,*fshift,*x,*f;
738 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
740 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
742 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
744 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
746 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
748 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
749 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
750 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
751 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
752 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
753 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
754 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
755 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
758 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
761 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
762 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
764 __m128i ifour = _mm_set1_epi32(4);
765 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
767 __m128 dummy_mask,cutoff_mask;
768 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
769 __m128 one = _mm_set1_ps(1.0);
770 __m128 two = _mm_set1_ps(2.0);
776 jindex = nlist->jindex;
778 shiftidx = nlist->shift;
780 shiftvec = fr->shift_vec[0];
781 fshift = fr->fshift[0];
782 facel = _mm_set1_ps(fr->epsfac);
783 charge = mdatoms->chargeA;
784 nvdwtype = fr->ntype;
786 vdwtype = mdatoms->typeA;
788 vftab = kernel_data->table_elec->data;
789 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
791 /* Setup water-specific parameters */
792 inr = nlist->iinr[0];
793 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
794 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
795 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
796 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
798 /* Avoid stupid compiler warnings */
799 jnrA = jnrB = jnrC = jnrD = 0;
808 for(iidx=0;iidx<4*DIM;iidx++)
813 /* Start outer loop over neighborlists */
814 for(iidx=0; iidx<nri; iidx++)
816 /* Load shift vector for this list */
817 i_shift_offset = DIM*shiftidx[iidx];
819 /* Load limits for loop over neighbors */
820 j_index_start = jindex[iidx];
821 j_index_end = jindex[iidx+1];
823 /* Get outer coordinate index */
825 i_coord_offset = DIM*inr;
827 /* Load i particle coords and add shift vector */
828 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
829 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
831 fix0 = _mm_setzero_ps();
832 fiy0 = _mm_setzero_ps();
833 fiz0 = _mm_setzero_ps();
834 fix1 = _mm_setzero_ps();
835 fiy1 = _mm_setzero_ps();
836 fiz1 = _mm_setzero_ps();
837 fix2 = _mm_setzero_ps();
838 fiy2 = _mm_setzero_ps();
839 fiz2 = _mm_setzero_ps();
840 fix3 = _mm_setzero_ps();
841 fiy3 = _mm_setzero_ps();
842 fiz3 = _mm_setzero_ps();
844 /* Start inner kernel loop */
845 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
848 /* Get j neighbor index, and coordinate index */
853 j_coord_offsetA = DIM*jnrA;
854 j_coord_offsetB = DIM*jnrB;
855 j_coord_offsetC = DIM*jnrC;
856 j_coord_offsetD = DIM*jnrD;
858 /* load j atom coordinates */
859 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
860 x+j_coord_offsetC,x+j_coord_offsetD,
863 /* Calculate displacement vector */
864 dx00 = _mm_sub_ps(ix0,jx0);
865 dy00 = _mm_sub_ps(iy0,jy0);
866 dz00 = _mm_sub_ps(iz0,jz0);
867 dx10 = _mm_sub_ps(ix1,jx0);
868 dy10 = _mm_sub_ps(iy1,jy0);
869 dz10 = _mm_sub_ps(iz1,jz0);
870 dx20 = _mm_sub_ps(ix2,jx0);
871 dy20 = _mm_sub_ps(iy2,jy0);
872 dz20 = _mm_sub_ps(iz2,jz0);
873 dx30 = _mm_sub_ps(ix3,jx0);
874 dy30 = _mm_sub_ps(iy3,jy0);
875 dz30 = _mm_sub_ps(iz3,jz0);
877 /* Calculate squared distance and things based on it */
878 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
879 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
880 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
881 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
883 rinv10 = gmx_mm_invsqrt_ps(rsq10);
884 rinv20 = gmx_mm_invsqrt_ps(rsq20);
885 rinv30 = gmx_mm_invsqrt_ps(rsq30);
887 rinvsq00 = gmx_mm_inv_ps(rsq00);
889 /* Load parameters for j particles */
890 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
891 charge+jnrC+0,charge+jnrD+0);
892 vdwjidx0A = 2*vdwtype[jnrA+0];
893 vdwjidx0B = 2*vdwtype[jnrB+0];
894 vdwjidx0C = 2*vdwtype[jnrC+0];
895 vdwjidx0D = 2*vdwtype[jnrD+0];
897 /**************************
898 * CALCULATE INTERACTIONS *
899 **************************/
901 /* Compute parameters for interactions between i and j atoms */
902 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
903 vdwparam+vdwioffset0+vdwjidx0B,
904 vdwparam+vdwioffset0+vdwjidx0C,
905 vdwparam+vdwioffset0+vdwjidx0D,
908 /* LENNARD-JONES DISPERSION/REPULSION */
910 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
911 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
915 /* Calculate temporary vectorial force */
916 tx = _mm_mul_ps(fscal,dx00);
917 ty = _mm_mul_ps(fscal,dy00);
918 tz = _mm_mul_ps(fscal,dz00);
920 /* Update vectorial force */
921 fix0 = _mm_add_ps(fix0,tx);
922 fiy0 = _mm_add_ps(fiy0,ty);
923 fiz0 = _mm_add_ps(fiz0,tz);
925 fjptrA = f+j_coord_offsetA;
926 fjptrB = f+j_coord_offsetB;
927 fjptrC = f+j_coord_offsetC;
928 fjptrD = f+j_coord_offsetD;
929 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
931 /**************************
932 * CALCULATE INTERACTIONS *
933 **************************/
935 r10 = _mm_mul_ps(rsq10,rinv10);
937 /* Compute parameters for interactions between i and j atoms */
938 qq10 = _mm_mul_ps(iq1,jq0);
940 /* Calculate table index by multiplying r with table scale and truncate to integer */
941 rt = _mm_mul_ps(r10,vftabscale);
942 vfitab = _mm_cvttps_epi32(rt);
943 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
944 vfitab = _mm_slli_epi32(vfitab,2);
946 /* CUBIC SPLINE TABLE ELECTROSTATICS */
947 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
948 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
949 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
950 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
951 _MM_TRANSPOSE4_PS(Y,F,G,H);
952 Heps = _mm_mul_ps(vfeps,H);
953 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
954 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
955 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
959 /* Calculate temporary vectorial force */
960 tx = _mm_mul_ps(fscal,dx10);
961 ty = _mm_mul_ps(fscal,dy10);
962 tz = _mm_mul_ps(fscal,dz10);
964 /* Update vectorial force */
965 fix1 = _mm_add_ps(fix1,tx);
966 fiy1 = _mm_add_ps(fiy1,ty);
967 fiz1 = _mm_add_ps(fiz1,tz);
969 fjptrA = f+j_coord_offsetA;
970 fjptrB = f+j_coord_offsetB;
971 fjptrC = f+j_coord_offsetC;
972 fjptrD = f+j_coord_offsetD;
973 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
975 /**************************
976 * CALCULATE INTERACTIONS *
977 **************************/
979 r20 = _mm_mul_ps(rsq20,rinv20);
981 /* Compute parameters for interactions between i and j atoms */
982 qq20 = _mm_mul_ps(iq2,jq0);
984 /* Calculate table index by multiplying r with table scale and truncate to integer */
985 rt = _mm_mul_ps(r20,vftabscale);
986 vfitab = _mm_cvttps_epi32(rt);
987 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
988 vfitab = _mm_slli_epi32(vfitab,2);
990 /* CUBIC SPLINE TABLE ELECTROSTATICS */
991 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
992 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
993 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
994 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
995 _MM_TRANSPOSE4_PS(Y,F,G,H);
996 Heps = _mm_mul_ps(vfeps,H);
997 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
998 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
999 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1003 /* Calculate temporary vectorial force */
1004 tx = _mm_mul_ps(fscal,dx20);
1005 ty = _mm_mul_ps(fscal,dy20);
1006 tz = _mm_mul_ps(fscal,dz20);
1008 /* Update vectorial force */
1009 fix2 = _mm_add_ps(fix2,tx);
1010 fiy2 = _mm_add_ps(fiy2,ty);
1011 fiz2 = _mm_add_ps(fiz2,tz);
1013 fjptrA = f+j_coord_offsetA;
1014 fjptrB = f+j_coord_offsetB;
1015 fjptrC = f+j_coord_offsetC;
1016 fjptrD = f+j_coord_offsetD;
1017 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1019 /**************************
1020 * CALCULATE INTERACTIONS *
1021 **************************/
1023 r30 = _mm_mul_ps(rsq30,rinv30);
1025 /* Compute parameters for interactions between i and j atoms */
1026 qq30 = _mm_mul_ps(iq3,jq0);
1028 /* Calculate table index by multiplying r with table scale and truncate to integer */
1029 rt = _mm_mul_ps(r30,vftabscale);
1030 vfitab = _mm_cvttps_epi32(rt);
1031 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1032 vfitab = _mm_slli_epi32(vfitab,2);
1034 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1035 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1036 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1037 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1038 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1039 _MM_TRANSPOSE4_PS(Y,F,G,H);
1040 Heps = _mm_mul_ps(vfeps,H);
1041 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1042 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1043 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1047 /* Calculate temporary vectorial force */
1048 tx = _mm_mul_ps(fscal,dx30);
1049 ty = _mm_mul_ps(fscal,dy30);
1050 tz = _mm_mul_ps(fscal,dz30);
1052 /* Update vectorial force */
1053 fix3 = _mm_add_ps(fix3,tx);
1054 fiy3 = _mm_add_ps(fiy3,ty);
1055 fiz3 = _mm_add_ps(fiz3,tz);
1057 fjptrA = f+j_coord_offsetA;
1058 fjptrB = f+j_coord_offsetB;
1059 fjptrC = f+j_coord_offsetC;
1060 fjptrD = f+j_coord_offsetD;
1061 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1063 /* Inner loop uses 144 flops */
1066 if(jidx<j_index_end)
1069 /* Get j neighbor index, and coordinate index */
1070 jnrlistA = jjnr[jidx];
1071 jnrlistB = jjnr[jidx+1];
1072 jnrlistC = jjnr[jidx+2];
1073 jnrlistD = jjnr[jidx+3];
1074 /* Sign of each element will be negative for non-real atoms.
1075 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1076 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1078 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1079 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1080 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1081 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1082 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1083 j_coord_offsetA = DIM*jnrA;
1084 j_coord_offsetB = DIM*jnrB;
1085 j_coord_offsetC = DIM*jnrC;
1086 j_coord_offsetD = DIM*jnrD;
1088 /* load j atom coordinates */
1089 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1090 x+j_coord_offsetC,x+j_coord_offsetD,
1093 /* Calculate displacement vector */
1094 dx00 = _mm_sub_ps(ix0,jx0);
1095 dy00 = _mm_sub_ps(iy0,jy0);
1096 dz00 = _mm_sub_ps(iz0,jz0);
1097 dx10 = _mm_sub_ps(ix1,jx0);
1098 dy10 = _mm_sub_ps(iy1,jy0);
1099 dz10 = _mm_sub_ps(iz1,jz0);
1100 dx20 = _mm_sub_ps(ix2,jx0);
1101 dy20 = _mm_sub_ps(iy2,jy0);
1102 dz20 = _mm_sub_ps(iz2,jz0);
1103 dx30 = _mm_sub_ps(ix3,jx0);
1104 dy30 = _mm_sub_ps(iy3,jy0);
1105 dz30 = _mm_sub_ps(iz3,jz0);
1107 /* Calculate squared distance and things based on it */
1108 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1109 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1110 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1111 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1113 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1114 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1115 rinv30 = gmx_mm_invsqrt_ps(rsq30);
1117 rinvsq00 = gmx_mm_inv_ps(rsq00);
1119 /* Load parameters for j particles */
1120 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1121 charge+jnrC+0,charge+jnrD+0);
1122 vdwjidx0A = 2*vdwtype[jnrA+0];
1123 vdwjidx0B = 2*vdwtype[jnrB+0];
1124 vdwjidx0C = 2*vdwtype[jnrC+0];
1125 vdwjidx0D = 2*vdwtype[jnrD+0];
1127 /**************************
1128 * CALCULATE INTERACTIONS *
1129 **************************/
1131 /* Compute parameters for interactions between i and j atoms */
1132 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1133 vdwparam+vdwioffset0+vdwjidx0B,
1134 vdwparam+vdwioffset0+vdwjidx0C,
1135 vdwparam+vdwioffset0+vdwjidx0D,
1138 /* LENNARD-JONES DISPERSION/REPULSION */
1140 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1141 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1145 fscal = _mm_andnot_ps(dummy_mask,fscal);
1147 /* Calculate temporary vectorial force */
1148 tx = _mm_mul_ps(fscal,dx00);
1149 ty = _mm_mul_ps(fscal,dy00);
1150 tz = _mm_mul_ps(fscal,dz00);
1152 /* Update vectorial force */
1153 fix0 = _mm_add_ps(fix0,tx);
1154 fiy0 = _mm_add_ps(fiy0,ty);
1155 fiz0 = _mm_add_ps(fiz0,tz);
1157 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1158 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1159 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1160 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1161 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1163 /**************************
1164 * CALCULATE INTERACTIONS *
1165 **************************/
1167 r10 = _mm_mul_ps(rsq10,rinv10);
1168 r10 = _mm_andnot_ps(dummy_mask,r10);
1170 /* Compute parameters for interactions between i and j atoms */
1171 qq10 = _mm_mul_ps(iq1,jq0);
1173 /* Calculate table index by multiplying r with table scale and truncate to integer */
1174 rt = _mm_mul_ps(r10,vftabscale);
1175 vfitab = _mm_cvttps_epi32(rt);
1176 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1177 vfitab = _mm_slli_epi32(vfitab,2);
1179 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1180 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1181 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1182 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1183 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1184 _MM_TRANSPOSE4_PS(Y,F,G,H);
1185 Heps = _mm_mul_ps(vfeps,H);
1186 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1187 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1188 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1192 fscal = _mm_andnot_ps(dummy_mask,fscal);
1194 /* Calculate temporary vectorial force */
1195 tx = _mm_mul_ps(fscal,dx10);
1196 ty = _mm_mul_ps(fscal,dy10);
1197 tz = _mm_mul_ps(fscal,dz10);
1199 /* Update vectorial force */
1200 fix1 = _mm_add_ps(fix1,tx);
1201 fiy1 = _mm_add_ps(fiy1,ty);
1202 fiz1 = _mm_add_ps(fiz1,tz);
1204 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1205 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1206 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1207 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1208 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1210 /**************************
1211 * CALCULATE INTERACTIONS *
1212 **************************/
1214 r20 = _mm_mul_ps(rsq20,rinv20);
1215 r20 = _mm_andnot_ps(dummy_mask,r20);
1217 /* Compute parameters for interactions between i and j atoms */
1218 qq20 = _mm_mul_ps(iq2,jq0);
1220 /* Calculate table index by multiplying r with table scale and truncate to integer */
1221 rt = _mm_mul_ps(r20,vftabscale);
1222 vfitab = _mm_cvttps_epi32(rt);
1223 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1224 vfitab = _mm_slli_epi32(vfitab,2);
1226 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1227 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1228 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1229 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1230 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1231 _MM_TRANSPOSE4_PS(Y,F,G,H);
1232 Heps = _mm_mul_ps(vfeps,H);
1233 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1234 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1235 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1239 fscal = _mm_andnot_ps(dummy_mask,fscal);
1241 /* Calculate temporary vectorial force */
1242 tx = _mm_mul_ps(fscal,dx20);
1243 ty = _mm_mul_ps(fscal,dy20);
1244 tz = _mm_mul_ps(fscal,dz20);
1246 /* Update vectorial force */
1247 fix2 = _mm_add_ps(fix2,tx);
1248 fiy2 = _mm_add_ps(fiy2,ty);
1249 fiz2 = _mm_add_ps(fiz2,tz);
1251 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1252 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1253 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1254 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1255 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1257 /**************************
1258 * CALCULATE INTERACTIONS *
1259 **************************/
1261 r30 = _mm_mul_ps(rsq30,rinv30);
1262 r30 = _mm_andnot_ps(dummy_mask,r30);
1264 /* Compute parameters for interactions between i and j atoms */
1265 qq30 = _mm_mul_ps(iq3,jq0);
1267 /* Calculate table index by multiplying r with table scale and truncate to integer */
1268 rt = _mm_mul_ps(r30,vftabscale);
1269 vfitab = _mm_cvttps_epi32(rt);
1270 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1271 vfitab = _mm_slli_epi32(vfitab,2);
1273 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1274 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1275 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1276 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1277 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1278 _MM_TRANSPOSE4_PS(Y,F,G,H);
1279 Heps = _mm_mul_ps(vfeps,H);
1280 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1281 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1282 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1286 fscal = _mm_andnot_ps(dummy_mask,fscal);
1288 /* Calculate temporary vectorial force */
1289 tx = _mm_mul_ps(fscal,dx30);
1290 ty = _mm_mul_ps(fscal,dy30);
1291 tz = _mm_mul_ps(fscal,dz30);
1293 /* Update vectorial force */
1294 fix3 = _mm_add_ps(fix3,tx);
1295 fiy3 = _mm_add_ps(fiy3,ty);
1296 fiz3 = _mm_add_ps(fiz3,tz);
1298 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1299 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1300 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1301 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1302 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1304 /* Inner loop uses 147 flops */
1307 /* End of innermost loop */
1309 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1310 f+i_coord_offset,fshift+i_shift_offset);
1312 /* Increment number of inner iterations */
1313 inneriter += j_index_end - j_index_start;
1315 /* Outer loop uses 24 flops */
1318 /* Increment number of outer iterations */
1321 /* Update outer/inner flops */
1323 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*147);