2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017,2018, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_VF_sse2_double
51 * Electrostatics interaction: ReactionField
52 * VdW interaction: LennardJones
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_VF_sse2_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
82 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
84 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
85 int vdwjidx0A,vdwjidx0B;
86 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
87 int vdwjidx1A,vdwjidx1B;
88 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
89 int vdwjidx2A,vdwjidx2B;
90 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
91 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
92 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
93 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
94 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
95 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
96 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
97 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
98 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
99 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
100 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
103 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
106 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
107 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
108 __m128d dummy_mask,cutoff_mask;
109 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
110 __m128d one = _mm_set1_pd(1.0);
111 __m128d two = _mm_set1_pd(2.0);
117 jindex = nlist->jindex;
119 shiftidx = nlist->shift;
121 shiftvec = fr->shift_vec[0];
122 fshift = fr->fshift[0];
123 facel = _mm_set1_pd(fr->ic->epsfac);
124 charge = mdatoms->chargeA;
125 krf = _mm_set1_pd(fr->ic->k_rf);
126 krf2 = _mm_set1_pd(fr->ic->k_rf*2.0);
127 crf = _mm_set1_pd(fr->ic->c_rf);
128 nvdwtype = fr->ntype;
130 vdwtype = mdatoms->typeA;
132 /* Setup water-specific parameters */
133 inr = nlist->iinr[0];
134 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
135 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
136 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
137 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
139 jq0 = _mm_set1_pd(charge[inr+0]);
140 jq1 = _mm_set1_pd(charge[inr+1]);
141 jq2 = _mm_set1_pd(charge[inr+2]);
142 vdwjidx0A = 2*vdwtype[inr+0];
143 qq00 = _mm_mul_pd(iq0,jq0);
144 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
145 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
146 qq01 = _mm_mul_pd(iq0,jq1);
147 qq02 = _mm_mul_pd(iq0,jq2);
148 qq10 = _mm_mul_pd(iq1,jq0);
149 qq11 = _mm_mul_pd(iq1,jq1);
150 qq12 = _mm_mul_pd(iq1,jq2);
151 qq20 = _mm_mul_pd(iq2,jq0);
152 qq21 = _mm_mul_pd(iq2,jq1);
153 qq22 = _mm_mul_pd(iq2,jq2);
155 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
156 rcutoff_scalar = fr->ic->rcoulomb;
157 rcutoff = _mm_set1_pd(rcutoff_scalar);
158 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
160 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
161 rvdw = _mm_set1_pd(fr->ic->rvdw);
163 /* Avoid stupid compiler warnings */
171 /* Start outer loop over neighborlists */
172 for(iidx=0; iidx<nri; iidx++)
174 /* Load shift vector for this list */
175 i_shift_offset = DIM*shiftidx[iidx];
177 /* Load limits for loop over neighbors */
178 j_index_start = jindex[iidx];
179 j_index_end = jindex[iidx+1];
181 /* Get outer coordinate index */
183 i_coord_offset = DIM*inr;
185 /* Load i particle coords and add shift vector */
186 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
187 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
189 fix0 = _mm_setzero_pd();
190 fiy0 = _mm_setzero_pd();
191 fiz0 = _mm_setzero_pd();
192 fix1 = _mm_setzero_pd();
193 fiy1 = _mm_setzero_pd();
194 fiz1 = _mm_setzero_pd();
195 fix2 = _mm_setzero_pd();
196 fiy2 = _mm_setzero_pd();
197 fiz2 = _mm_setzero_pd();
199 /* Reset potential sums */
200 velecsum = _mm_setzero_pd();
201 vvdwsum = _mm_setzero_pd();
203 /* Start inner kernel loop */
204 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
207 /* Get j neighbor index, and coordinate index */
210 j_coord_offsetA = DIM*jnrA;
211 j_coord_offsetB = DIM*jnrB;
213 /* load j atom coordinates */
214 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
215 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
217 /* Calculate displacement vector */
218 dx00 = _mm_sub_pd(ix0,jx0);
219 dy00 = _mm_sub_pd(iy0,jy0);
220 dz00 = _mm_sub_pd(iz0,jz0);
221 dx01 = _mm_sub_pd(ix0,jx1);
222 dy01 = _mm_sub_pd(iy0,jy1);
223 dz01 = _mm_sub_pd(iz0,jz1);
224 dx02 = _mm_sub_pd(ix0,jx2);
225 dy02 = _mm_sub_pd(iy0,jy2);
226 dz02 = _mm_sub_pd(iz0,jz2);
227 dx10 = _mm_sub_pd(ix1,jx0);
228 dy10 = _mm_sub_pd(iy1,jy0);
229 dz10 = _mm_sub_pd(iz1,jz0);
230 dx11 = _mm_sub_pd(ix1,jx1);
231 dy11 = _mm_sub_pd(iy1,jy1);
232 dz11 = _mm_sub_pd(iz1,jz1);
233 dx12 = _mm_sub_pd(ix1,jx2);
234 dy12 = _mm_sub_pd(iy1,jy2);
235 dz12 = _mm_sub_pd(iz1,jz2);
236 dx20 = _mm_sub_pd(ix2,jx0);
237 dy20 = _mm_sub_pd(iy2,jy0);
238 dz20 = _mm_sub_pd(iz2,jz0);
239 dx21 = _mm_sub_pd(ix2,jx1);
240 dy21 = _mm_sub_pd(iy2,jy1);
241 dz21 = _mm_sub_pd(iz2,jz1);
242 dx22 = _mm_sub_pd(ix2,jx2);
243 dy22 = _mm_sub_pd(iy2,jy2);
244 dz22 = _mm_sub_pd(iz2,jz2);
246 /* Calculate squared distance and things based on it */
247 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
248 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
249 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
250 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
251 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
252 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
253 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
254 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
255 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
257 rinv00 = sse2_invsqrt_d(rsq00);
258 rinv01 = sse2_invsqrt_d(rsq01);
259 rinv02 = sse2_invsqrt_d(rsq02);
260 rinv10 = sse2_invsqrt_d(rsq10);
261 rinv11 = sse2_invsqrt_d(rsq11);
262 rinv12 = sse2_invsqrt_d(rsq12);
263 rinv20 = sse2_invsqrt_d(rsq20);
264 rinv21 = sse2_invsqrt_d(rsq21);
265 rinv22 = sse2_invsqrt_d(rsq22);
267 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
268 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
269 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
270 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
271 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
272 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
273 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
274 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
275 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
277 fjx0 = _mm_setzero_pd();
278 fjy0 = _mm_setzero_pd();
279 fjz0 = _mm_setzero_pd();
280 fjx1 = _mm_setzero_pd();
281 fjy1 = _mm_setzero_pd();
282 fjz1 = _mm_setzero_pd();
283 fjx2 = _mm_setzero_pd();
284 fjy2 = _mm_setzero_pd();
285 fjz2 = _mm_setzero_pd();
287 /**************************
288 * CALCULATE INTERACTIONS *
289 **************************/
291 if (gmx_mm_any_lt(rsq00,rcutoff2))
294 /* REACTION-FIELD ELECTROSTATICS */
295 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_add_pd(rinv00,_mm_mul_pd(krf,rsq00)),crf));
296 felec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_mul_pd(rinv00,rinvsq00),krf2));
298 /* LENNARD-JONES DISPERSION/REPULSION */
300 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
301 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
302 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
303 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
304 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_mul_pd(c6_00,sh_vdw_invrcut6)),one_sixth));
305 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
307 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
309 /* Update potential sum for this i atom from the interaction with this j atom. */
310 velec = _mm_and_pd(velec,cutoff_mask);
311 velecsum = _mm_add_pd(velecsum,velec);
312 vvdw = _mm_and_pd(vvdw,cutoff_mask);
313 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
315 fscal = _mm_add_pd(felec,fvdw);
317 fscal = _mm_and_pd(fscal,cutoff_mask);
319 /* Calculate temporary vectorial force */
320 tx = _mm_mul_pd(fscal,dx00);
321 ty = _mm_mul_pd(fscal,dy00);
322 tz = _mm_mul_pd(fscal,dz00);
324 /* Update vectorial force */
325 fix0 = _mm_add_pd(fix0,tx);
326 fiy0 = _mm_add_pd(fiy0,ty);
327 fiz0 = _mm_add_pd(fiz0,tz);
329 fjx0 = _mm_add_pd(fjx0,tx);
330 fjy0 = _mm_add_pd(fjy0,ty);
331 fjz0 = _mm_add_pd(fjz0,tz);
335 /**************************
336 * CALCULATE INTERACTIONS *
337 **************************/
339 if (gmx_mm_any_lt(rsq01,rcutoff2))
342 /* REACTION-FIELD ELECTROSTATICS */
343 velec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_add_pd(rinv01,_mm_mul_pd(krf,rsq01)),crf));
344 felec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_mul_pd(rinv01,rinvsq01),krf2));
346 cutoff_mask = _mm_cmplt_pd(rsq01,rcutoff2);
348 /* Update potential sum for this i atom from the interaction with this j atom. */
349 velec = _mm_and_pd(velec,cutoff_mask);
350 velecsum = _mm_add_pd(velecsum,velec);
354 fscal = _mm_and_pd(fscal,cutoff_mask);
356 /* Calculate temporary vectorial force */
357 tx = _mm_mul_pd(fscal,dx01);
358 ty = _mm_mul_pd(fscal,dy01);
359 tz = _mm_mul_pd(fscal,dz01);
361 /* Update vectorial force */
362 fix0 = _mm_add_pd(fix0,tx);
363 fiy0 = _mm_add_pd(fiy0,ty);
364 fiz0 = _mm_add_pd(fiz0,tz);
366 fjx1 = _mm_add_pd(fjx1,tx);
367 fjy1 = _mm_add_pd(fjy1,ty);
368 fjz1 = _mm_add_pd(fjz1,tz);
372 /**************************
373 * CALCULATE INTERACTIONS *
374 **************************/
376 if (gmx_mm_any_lt(rsq02,rcutoff2))
379 /* REACTION-FIELD ELECTROSTATICS */
380 velec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_add_pd(rinv02,_mm_mul_pd(krf,rsq02)),crf));
381 felec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_mul_pd(rinv02,rinvsq02),krf2));
383 cutoff_mask = _mm_cmplt_pd(rsq02,rcutoff2);
385 /* Update potential sum for this i atom from the interaction with this j atom. */
386 velec = _mm_and_pd(velec,cutoff_mask);
387 velecsum = _mm_add_pd(velecsum,velec);
391 fscal = _mm_and_pd(fscal,cutoff_mask);
393 /* Calculate temporary vectorial force */
394 tx = _mm_mul_pd(fscal,dx02);
395 ty = _mm_mul_pd(fscal,dy02);
396 tz = _mm_mul_pd(fscal,dz02);
398 /* Update vectorial force */
399 fix0 = _mm_add_pd(fix0,tx);
400 fiy0 = _mm_add_pd(fiy0,ty);
401 fiz0 = _mm_add_pd(fiz0,tz);
403 fjx2 = _mm_add_pd(fjx2,tx);
404 fjy2 = _mm_add_pd(fjy2,ty);
405 fjz2 = _mm_add_pd(fjz2,tz);
409 /**************************
410 * CALCULATE INTERACTIONS *
411 **************************/
413 if (gmx_mm_any_lt(rsq10,rcutoff2))
416 /* REACTION-FIELD ELECTROSTATICS */
417 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_add_pd(rinv10,_mm_mul_pd(krf,rsq10)),crf));
418 felec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_mul_pd(rinv10,rinvsq10),krf2));
420 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
422 /* Update potential sum for this i atom from the interaction with this j atom. */
423 velec = _mm_and_pd(velec,cutoff_mask);
424 velecsum = _mm_add_pd(velecsum,velec);
428 fscal = _mm_and_pd(fscal,cutoff_mask);
430 /* Calculate temporary vectorial force */
431 tx = _mm_mul_pd(fscal,dx10);
432 ty = _mm_mul_pd(fscal,dy10);
433 tz = _mm_mul_pd(fscal,dz10);
435 /* Update vectorial force */
436 fix1 = _mm_add_pd(fix1,tx);
437 fiy1 = _mm_add_pd(fiy1,ty);
438 fiz1 = _mm_add_pd(fiz1,tz);
440 fjx0 = _mm_add_pd(fjx0,tx);
441 fjy0 = _mm_add_pd(fjy0,ty);
442 fjz0 = _mm_add_pd(fjz0,tz);
446 /**************************
447 * CALCULATE INTERACTIONS *
448 **************************/
450 if (gmx_mm_any_lt(rsq11,rcutoff2))
453 /* REACTION-FIELD ELECTROSTATICS */
454 velec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_add_pd(rinv11,_mm_mul_pd(krf,rsq11)),crf));
455 felec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_mul_pd(rinv11,rinvsq11),krf2));
457 cutoff_mask = _mm_cmplt_pd(rsq11,rcutoff2);
459 /* Update potential sum for this i atom from the interaction with this j atom. */
460 velec = _mm_and_pd(velec,cutoff_mask);
461 velecsum = _mm_add_pd(velecsum,velec);
465 fscal = _mm_and_pd(fscal,cutoff_mask);
467 /* Calculate temporary vectorial force */
468 tx = _mm_mul_pd(fscal,dx11);
469 ty = _mm_mul_pd(fscal,dy11);
470 tz = _mm_mul_pd(fscal,dz11);
472 /* Update vectorial force */
473 fix1 = _mm_add_pd(fix1,tx);
474 fiy1 = _mm_add_pd(fiy1,ty);
475 fiz1 = _mm_add_pd(fiz1,tz);
477 fjx1 = _mm_add_pd(fjx1,tx);
478 fjy1 = _mm_add_pd(fjy1,ty);
479 fjz1 = _mm_add_pd(fjz1,tz);
483 /**************************
484 * CALCULATE INTERACTIONS *
485 **************************/
487 if (gmx_mm_any_lt(rsq12,rcutoff2))
490 /* REACTION-FIELD ELECTROSTATICS */
491 velec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_add_pd(rinv12,_mm_mul_pd(krf,rsq12)),crf));
492 felec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_mul_pd(rinv12,rinvsq12),krf2));
494 cutoff_mask = _mm_cmplt_pd(rsq12,rcutoff2);
496 /* Update potential sum for this i atom from the interaction with this j atom. */
497 velec = _mm_and_pd(velec,cutoff_mask);
498 velecsum = _mm_add_pd(velecsum,velec);
502 fscal = _mm_and_pd(fscal,cutoff_mask);
504 /* Calculate temporary vectorial force */
505 tx = _mm_mul_pd(fscal,dx12);
506 ty = _mm_mul_pd(fscal,dy12);
507 tz = _mm_mul_pd(fscal,dz12);
509 /* Update vectorial force */
510 fix1 = _mm_add_pd(fix1,tx);
511 fiy1 = _mm_add_pd(fiy1,ty);
512 fiz1 = _mm_add_pd(fiz1,tz);
514 fjx2 = _mm_add_pd(fjx2,tx);
515 fjy2 = _mm_add_pd(fjy2,ty);
516 fjz2 = _mm_add_pd(fjz2,tz);
520 /**************************
521 * CALCULATE INTERACTIONS *
522 **************************/
524 if (gmx_mm_any_lt(rsq20,rcutoff2))
527 /* REACTION-FIELD ELECTROSTATICS */
528 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_add_pd(rinv20,_mm_mul_pd(krf,rsq20)),crf));
529 felec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_mul_pd(rinv20,rinvsq20),krf2));
531 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
533 /* Update potential sum for this i atom from the interaction with this j atom. */
534 velec = _mm_and_pd(velec,cutoff_mask);
535 velecsum = _mm_add_pd(velecsum,velec);
539 fscal = _mm_and_pd(fscal,cutoff_mask);
541 /* Calculate temporary vectorial force */
542 tx = _mm_mul_pd(fscal,dx20);
543 ty = _mm_mul_pd(fscal,dy20);
544 tz = _mm_mul_pd(fscal,dz20);
546 /* Update vectorial force */
547 fix2 = _mm_add_pd(fix2,tx);
548 fiy2 = _mm_add_pd(fiy2,ty);
549 fiz2 = _mm_add_pd(fiz2,tz);
551 fjx0 = _mm_add_pd(fjx0,tx);
552 fjy0 = _mm_add_pd(fjy0,ty);
553 fjz0 = _mm_add_pd(fjz0,tz);
557 /**************************
558 * CALCULATE INTERACTIONS *
559 **************************/
561 if (gmx_mm_any_lt(rsq21,rcutoff2))
564 /* REACTION-FIELD ELECTROSTATICS */
565 velec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_add_pd(rinv21,_mm_mul_pd(krf,rsq21)),crf));
566 felec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_mul_pd(rinv21,rinvsq21),krf2));
568 cutoff_mask = _mm_cmplt_pd(rsq21,rcutoff2);
570 /* Update potential sum for this i atom from the interaction with this j atom. */
571 velec = _mm_and_pd(velec,cutoff_mask);
572 velecsum = _mm_add_pd(velecsum,velec);
576 fscal = _mm_and_pd(fscal,cutoff_mask);
578 /* Calculate temporary vectorial force */
579 tx = _mm_mul_pd(fscal,dx21);
580 ty = _mm_mul_pd(fscal,dy21);
581 tz = _mm_mul_pd(fscal,dz21);
583 /* Update vectorial force */
584 fix2 = _mm_add_pd(fix2,tx);
585 fiy2 = _mm_add_pd(fiy2,ty);
586 fiz2 = _mm_add_pd(fiz2,tz);
588 fjx1 = _mm_add_pd(fjx1,tx);
589 fjy1 = _mm_add_pd(fjy1,ty);
590 fjz1 = _mm_add_pd(fjz1,tz);
594 /**************************
595 * CALCULATE INTERACTIONS *
596 **************************/
598 if (gmx_mm_any_lt(rsq22,rcutoff2))
601 /* REACTION-FIELD ELECTROSTATICS */
602 velec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_add_pd(rinv22,_mm_mul_pd(krf,rsq22)),crf));
603 felec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_mul_pd(rinv22,rinvsq22),krf2));
605 cutoff_mask = _mm_cmplt_pd(rsq22,rcutoff2);
607 /* Update potential sum for this i atom from the interaction with this j atom. */
608 velec = _mm_and_pd(velec,cutoff_mask);
609 velecsum = _mm_add_pd(velecsum,velec);
613 fscal = _mm_and_pd(fscal,cutoff_mask);
615 /* Calculate temporary vectorial force */
616 tx = _mm_mul_pd(fscal,dx22);
617 ty = _mm_mul_pd(fscal,dy22);
618 tz = _mm_mul_pd(fscal,dz22);
620 /* Update vectorial force */
621 fix2 = _mm_add_pd(fix2,tx);
622 fiy2 = _mm_add_pd(fiy2,ty);
623 fiz2 = _mm_add_pd(fiz2,tz);
625 fjx2 = _mm_add_pd(fjx2,tx);
626 fjy2 = _mm_add_pd(fjy2,ty);
627 fjz2 = _mm_add_pd(fjz2,tz);
631 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
633 /* Inner loop uses 342 flops */
640 j_coord_offsetA = DIM*jnrA;
642 /* load j atom coordinates */
643 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
644 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
646 /* Calculate displacement vector */
647 dx00 = _mm_sub_pd(ix0,jx0);
648 dy00 = _mm_sub_pd(iy0,jy0);
649 dz00 = _mm_sub_pd(iz0,jz0);
650 dx01 = _mm_sub_pd(ix0,jx1);
651 dy01 = _mm_sub_pd(iy0,jy1);
652 dz01 = _mm_sub_pd(iz0,jz1);
653 dx02 = _mm_sub_pd(ix0,jx2);
654 dy02 = _mm_sub_pd(iy0,jy2);
655 dz02 = _mm_sub_pd(iz0,jz2);
656 dx10 = _mm_sub_pd(ix1,jx0);
657 dy10 = _mm_sub_pd(iy1,jy0);
658 dz10 = _mm_sub_pd(iz1,jz0);
659 dx11 = _mm_sub_pd(ix1,jx1);
660 dy11 = _mm_sub_pd(iy1,jy1);
661 dz11 = _mm_sub_pd(iz1,jz1);
662 dx12 = _mm_sub_pd(ix1,jx2);
663 dy12 = _mm_sub_pd(iy1,jy2);
664 dz12 = _mm_sub_pd(iz1,jz2);
665 dx20 = _mm_sub_pd(ix2,jx0);
666 dy20 = _mm_sub_pd(iy2,jy0);
667 dz20 = _mm_sub_pd(iz2,jz0);
668 dx21 = _mm_sub_pd(ix2,jx1);
669 dy21 = _mm_sub_pd(iy2,jy1);
670 dz21 = _mm_sub_pd(iz2,jz1);
671 dx22 = _mm_sub_pd(ix2,jx2);
672 dy22 = _mm_sub_pd(iy2,jy2);
673 dz22 = _mm_sub_pd(iz2,jz2);
675 /* Calculate squared distance and things based on it */
676 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
677 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
678 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
679 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
680 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
681 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
682 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
683 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
684 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
686 rinv00 = sse2_invsqrt_d(rsq00);
687 rinv01 = sse2_invsqrt_d(rsq01);
688 rinv02 = sse2_invsqrt_d(rsq02);
689 rinv10 = sse2_invsqrt_d(rsq10);
690 rinv11 = sse2_invsqrt_d(rsq11);
691 rinv12 = sse2_invsqrt_d(rsq12);
692 rinv20 = sse2_invsqrt_d(rsq20);
693 rinv21 = sse2_invsqrt_d(rsq21);
694 rinv22 = sse2_invsqrt_d(rsq22);
696 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
697 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
698 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
699 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
700 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
701 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
702 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
703 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
704 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
706 fjx0 = _mm_setzero_pd();
707 fjy0 = _mm_setzero_pd();
708 fjz0 = _mm_setzero_pd();
709 fjx1 = _mm_setzero_pd();
710 fjy1 = _mm_setzero_pd();
711 fjz1 = _mm_setzero_pd();
712 fjx2 = _mm_setzero_pd();
713 fjy2 = _mm_setzero_pd();
714 fjz2 = _mm_setzero_pd();
716 /**************************
717 * CALCULATE INTERACTIONS *
718 **************************/
720 if (gmx_mm_any_lt(rsq00,rcutoff2))
723 /* REACTION-FIELD ELECTROSTATICS */
724 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_add_pd(rinv00,_mm_mul_pd(krf,rsq00)),crf));
725 felec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_mul_pd(rinv00,rinvsq00),krf2));
727 /* LENNARD-JONES DISPERSION/REPULSION */
729 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
730 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
731 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
732 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
733 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_mul_pd(c6_00,sh_vdw_invrcut6)),one_sixth));
734 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
736 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
738 /* Update potential sum for this i atom from the interaction with this j atom. */
739 velec = _mm_and_pd(velec,cutoff_mask);
740 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
741 velecsum = _mm_add_pd(velecsum,velec);
742 vvdw = _mm_and_pd(vvdw,cutoff_mask);
743 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
744 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
746 fscal = _mm_add_pd(felec,fvdw);
748 fscal = _mm_and_pd(fscal,cutoff_mask);
750 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
752 /* Calculate temporary vectorial force */
753 tx = _mm_mul_pd(fscal,dx00);
754 ty = _mm_mul_pd(fscal,dy00);
755 tz = _mm_mul_pd(fscal,dz00);
757 /* Update vectorial force */
758 fix0 = _mm_add_pd(fix0,tx);
759 fiy0 = _mm_add_pd(fiy0,ty);
760 fiz0 = _mm_add_pd(fiz0,tz);
762 fjx0 = _mm_add_pd(fjx0,tx);
763 fjy0 = _mm_add_pd(fjy0,ty);
764 fjz0 = _mm_add_pd(fjz0,tz);
768 /**************************
769 * CALCULATE INTERACTIONS *
770 **************************/
772 if (gmx_mm_any_lt(rsq01,rcutoff2))
775 /* REACTION-FIELD ELECTROSTATICS */
776 velec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_add_pd(rinv01,_mm_mul_pd(krf,rsq01)),crf));
777 felec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_mul_pd(rinv01,rinvsq01),krf2));
779 cutoff_mask = _mm_cmplt_pd(rsq01,rcutoff2);
781 /* Update potential sum for this i atom from the interaction with this j atom. */
782 velec = _mm_and_pd(velec,cutoff_mask);
783 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
784 velecsum = _mm_add_pd(velecsum,velec);
788 fscal = _mm_and_pd(fscal,cutoff_mask);
790 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
792 /* Calculate temporary vectorial force */
793 tx = _mm_mul_pd(fscal,dx01);
794 ty = _mm_mul_pd(fscal,dy01);
795 tz = _mm_mul_pd(fscal,dz01);
797 /* Update vectorial force */
798 fix0 = _mm_add_pd(fix0,tx);
799 fiy0 = _mm_add_pd(fiy0,ty);
800 fiz0 = _mm_add_pd(fiz0,tz);
802 fjx1 = _mm_add_pd(fjx1,tx);
803 fjy1 = _mm_add_pd(fjy1,ty);
804 fjz1 = _mm_add_pd(fjz1,tz);
808 /**************************
809 * CALCULATE INTERACTIONS *
810 **************************/
812 if (gmx_mm_any_lt(rsq02,rcutoff2))
815 /* REACTION-FIELD ELECTROSTATICS */
816 velec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_add_pd(rinv02,_mm_mul_pd(krf,rsq02)),crf));
817 felec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_mul_pd(rinv02,rinvsq02),krf2));
819 cutoff_mask = _mm_cmplt_pd(rsq02,rcutoff2);
821 /* Update potential sum for this i atom from the interaction with this j atom. */
822 velec = _mm_and_pd(velec,cutoff_mask);
823 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
824 velecsum = _mm_add_pd(velecsum,velec);
828 fscal = _mm_and_pd(fscal,cutoff_mask);
830 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
832 /* Calculate temporary vectorial force */
833 tx = _mm_mul_pd(fscal,dx02);
834 ty = _mm_mul_pd(fscal,dy02);
835 tz = _mm_mul_pd(fscal,dz02);
837 /* Update vectorial force */
838 fix0 = _mm_add_pd(fix0,tx);
839 fiy0 = _mm_add_pd(fiy0,ty);
840 fiz0 = _mm_add_pd(fiz0,tz);
842 fjx2 = _mm_add_pd(fjx2,tx);
843 fjy2 = _mm_add_pd(fjy2,ty);
844 fjz2 = _mm_add_pd(fjz2,tz);
848 /**************************
849 * CALCULATE INTERACTIONS *
850 **************************/
852 if (gmx_mm_any_lt(rsq10,rcutoff2))
855 /* REACTION-FIELD ELECTROSTATICS */
856 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_add_pd(rinv10,_mm_mul_pd(krf,rsq10)),crf));
857 felec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_mul_pd(rinv10,rinvsq10),krf2));
859 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
861 /* Update potential sum for this i atom from the interaction with this j atom. */
862 velec = _mm_and_pd(velec,cutoff_mask);
863 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
864 velecsum = _mm_add_pd(velecsum,velec);
868 fscal = _mm_and_pd(fscal,cutoff_mask);
870 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
872 /* Calculate temporary vectorial force */
873 tx = _mm_mul_pd(fscal,dx10);
874 ty = _mm_mul_pd(fscal,dy10);
875 tz = _mm_mul_pd(fscal,dz10);
877 /* Update vectorial force */
878 fix1 = _mm_add_pd(fix1,tx);
879 fiy1 = _mm_add_pd(fiy1,ty);
880 fiz1 = _mm_add_pd(fiz1,tz);
882 fjx0 = _mm_add_pd(fjx0,tx);
883 fjy0 = _mm_add_pd(fjy0,ty);
884 fjz0 = _mm_add_pd(fjz0,tz);
888 /**************************
889 * CALCULATE INTERACTIONS *
890 **************************/
892 if (gmx_mm_any_lt(rsq11,rcutoff2))
895 /* REACTION-FIELD ELECTROSTATICS */
896 velec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_add_pd(rinv11,_mm_mul_pd(krf,rsq11)),crf));
897 felec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_mul_pd(rinv11,rinvsq11),krf2));
899 cutoff_mask = _mm_cmplt_pd(rsq11,rcutoff2);
901 /* Update potential sum for this i atom from the interaction with this j atom. */
902 velec = _mm_and_pd(velec,cutoff_mask);
903 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
904 velecsum = _mm_add_pd(velecsum,velec);
908 fscal = _mm_and_pd(fscal,cutoff_mask);
910 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
912 /* Calculate temporary vectorial force */
913 tx = _mm_mul_pd(fscal,dx11);
914 ty = _mm_mul_pd(fscal,dy11);
915 tz = _mm_mul_pd(fscal,dz11);
917 /* Update vectorial force */
918 fix1 = _mm_add_pd(fix1,tx);
919 fiy1 = _mm_add_pd(fiy1,ty);
920 fiz1 = _mm_add_pd(fiz1,tz);
922 fjx1 = _mm_add_pd(fjx1,tx);
923 fjy1 = _mm_add_pd(fjy1,ty);
924 fjz1 = _mm_add_pd(fjz1,tz);
928 /**************************
929 * CALCULATE INTERACTIONS *
930 **************************/
932 if (gmx_mm_any_lt(rsq12,rcutoff2))
935 /* REACTION-FIELD ELECTROSTATICS */
936 velec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_add_pd(rinv12,_mm_mul_pd(krf,rsq12)),crf));
937 felec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_mul_pd(rinv12,rinvsq12),krf2));
939 cutoff_mask = _mm_cmplt_pd(rsq12,rcutoff2);
941 /* Update potential sum for this i atom from the interaction with this j atom. */
942 velec = _mm_and_pd(velec,cutoff_mask);
943 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
944 velecsum = _mm_add_pd(velecsum,velec);
948 fscal = _mm_and_pd(fscal,cutoff_mask);
950 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
952 /* Calculate temporary vectorial force */
953 tx = _mm_mul_pd(fscal,dx12);
954 ty = _mm_mul_pd(fscal,dy12);
955 tz = _mm_mul_pd(fscal,dz12);
957 /* Update vectorial force */
958 fix1 = _mm_add_pd(fix1,tx);
959 fiy1 = _mm_add_pd(fiy1,ty);
960 fiz1 = _mm_add_pd(fiz1,tz);
962 fjx2 = _mm_add_pd(fjx2,tx);
963 fjy2 = _mm_add_pd(fjy2,ty);
964 fjz2 = _mm_add_pd(fjz2,tz);
968 /**************************
969 * CALCULATE INTERACTIONS *
970 **************************/
972 if (gmx_mm_any_lt(rsq20,rcutoff2))
975 /* REACTION-FIELD ELECTROSTATICS */
976 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_add_pd(rinv20,_mm_mul_pd(krf,rsq20)),crf));
977 felec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_mul_pd(rinv20,rinvsq20),krf2));
979 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
981 /* Update potential sum for this i atom from the interaction with this j atom. */
982 velec = _mm_and_pd(velec,cutoff_mask);
983 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
984 velecsum = _mm_add_pd(velecsum,velec);
988 fscal = _mm_and_pd(fscal,cutoff_mask);
990 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
992 /* Calculate temporary vectorial force */
993 tx = _mm_mul_pd(fscal,dx20);
994 ty = _mm_mul_pd(fscal,dy20);
995 tz = _mm_mul_pd(fscal,dz20);
997 /* Update vectorial force */
998 fix2 = _mm_add_pd(fix2,tx);
999 fiy2 = _mm_add_pd(fiy2,ty);
1000 fiz2 = _mm_add_pd(fiz2,tz);
1002 fjx0 = _mm_add_pd(fjx0,tx);
1003 fjy0 = _mm_add_pd(fjy0,ty);
1004 fjz0 = _mm_add_pd(fjz0,tz);
1008 /**************************
1009 * CALCULATE INTERACTIONS *
1010 **************************/
1012 if (gmx_mm_any_lt(rsq21,rcutoff2))
1015 /* REACTION-FIELD ELECTROSTATICS */
1016 velec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_add_pd(rinv21,_mm_mul_pd(krf,rsq21)),crf));
1017 felec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_mul_pd(rinv21,rinvsq21),krf2));
1019 cutoff_mask = _mm_cmplt_pd(rsq21,rcutoff2);
1021 /* Update potential sum for this i atom from the interaction with this j atom. */
1022 velec = _mm_and_pd(velec,cutoff_mask);
1023 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1024 velecsum = _mm_add_pd(velecsum,velec);
1028 fscal = _mm_and_pd(fscal,cutoff_mask);
1030 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1032 /* Calculate temporary vectorial force */
1033 tx = _mm_mul_pd(fscal,dx21);
1034 ty = _mm_mul_pd(fscal,dy21);
1035 tz = _mm_mul_pd(fscal,dz21);
1037 /* Update vectorial force */
1038 fix2 = _mm_add_pd(fix2,tx);
1039 fiy2 = _mm_add_pd(fiy2,ty);
1040 fiz2 = _mm_add_pd(fiz2,tz);
1042 fjx1 = _mm_add_pd(fjx1,tx);
1043 fjy1 = _mm_add_pd(fjy1,ty);
1044 fjz1 = _mm_add_pd(fjz1,tz);
1048 /**************************
1049 * CALCULATE INTERACTIONS *
1050 **************************/
1052 if (gmx_mm_any_lt(rsq22,rcutoff2))
1055 /* REACTION-FIELD ELECTROSTATICS */
1056 velec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_add_pd(rinv22,_mm_mul_pd(krf,rsq22)),crf));
1057 felec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_mul_pd(rinv22,rinvsq22),krf2));
1059 cutoff_mask = _mm_cmplt_pd(rsq22,rcutoff2);
1061 /* Update potential sum for this i atom from the interaction with this j atom. */
1062 velec = _mm_and_pd(velec,cutoff_mask);
1063 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1064 velecsum = _mm_add_pd(velecsum,velec);
1068 fscal = _mm_and_pd(fscal,cutoff_mask);
1070 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1072 /* Calculate temporary vectorial force */
1073 tx = _mm_mul_pd(fscal,dx22);
1074 ty = _mm_mul_pd(fscal,dy22);
1075 tz = _mm_mul_pd(fscal,dz22);
1077 /* Update vectorial force */
1078 fix2 = _mm_add_pd(fix2,tx);
1079 fiy2 = _mm_add_pd(fiy2,ty);
1080 fiz2 = _mm_add_pd(fiz2,tz);
1082 fjx2 = _mm_add_pd(fjx2,tx);
1083 fjy2 = _mm_add_pd(fjy2,ty);
1084 fjz2 = _mm_add_pd(fjz2,tz);
1088 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1090 /* Inner loop uses 342 flops */
1093 /* End of innermost loop */
1095 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1096 f+i_coord_offset,fshift+i_shift_offset);
1099 /* Update potential energies */
1100 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1101 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1103 /* Increment number of inner iterations */
1104 inneriter += j_index_end - j_index_start;
1106 /* Outer loop uses 20 flops */
1109 /* Increment number of outer iterations */
1112 /* Update outer/inner flops */
1114 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*342);
1117 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_F_sse2_double
1118 * Electrostatics interaction: ReactionField
1119 * VdW interaction: LennardJones
1120 * Geometry: Water3-Water3
1121 * Calculate force/pot: Force
1124 nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_F_sse2_double
1125 (t_nblist * gmx_restrict nlist,
1126 rvec * gmx_restrict xx,
1127 rvec * gmx_restrict ff,
1128 struct t_forcerec * gmx_restrict fr,
1129 t_mdatoms * gmx_restrict mdatoms,
1130 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1131 t_nrnb * gmx_restrict nrnb)
1133 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1134 * just 0 for non-waters.
1135 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
1136 * jnr indices corresponding to data put in the four positions in the SIMD register.
1138 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1139 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1141 int j_coord_offsetA,j_coord_offsetB;
1142 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1143 real rcutoff_scalar;
1144 real *shiftvec,*fshift,*x,*f;
1145 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1147 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1149 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1151 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1152 int vdwjidx0A,vdwjidx0B;
1153 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1154 int vdwjidx1A,vdwjidx1B;
1155 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1156 int vdwjidx2A,vdwjidx2B;
1157 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1158 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1159 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1160 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1161 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1162 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1163 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1164 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1165 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1166 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1167 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
1170 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1173 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
1174 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
1175 __m128d dummy_mask,cutoff_mask;
1176 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
1177 __m128d one = _mm_set1_pd(1.0);
1178 __m128d two = _mm_set1_pd(2.0);
1184 jindex = nlist->jindex;
1186 shiftidx = nlist->shift;
1188 shiftvec = fr->shift_vec[0];
1189 fshift = fr->fshift[0];
1190 facel = _mm_set1_pd(fr->ic->epsfac);
1191 charge = mdatoms->chargeA;
1192 krf = _mm_set1_pd(fr->ic->k_rf);
1193 krf2 = _mm_set1_pd(fr->ic->k_rf*2.0);
1194 crf = _mm_set1_pd(fr->ic->c_rf);
1195 nvdwtype = fr->ntype;
1196 vdwparam = fr->nbfp;
1197 vdwtype = mdatoms->typeA;
1199 /* Setup water-specific parameters */
1200 inr = nlist->iinr[0];
1201 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
1202 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
1203 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
1204 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1206 jq0 = _mm_set1_pd(charge[inr+0]);
1207 jq1 = _mm_set1_pd(charge[inr+1]);
1208 jq2 = _mm_set1_pd(charge[inr+2]);
1209 vdwjidx0A = 2*vdwtype[inr+0];
1210 qq00 = _mm_mul_pd(iq0,jq0);
1211 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
1212 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
1213 qq01 = _mm_mul_pd(iq0,jq1);
1214 qq02 = _mm_mul_pd(iq0,jq2);
1215 qq10 = _mm_mul_pd(iq1,jq0);
1216 qq11 = _mm_mul_pd(iq1,jq1);
1217 qq12 = _mm_mul_pd(iq1,jq2);
1218 qq20 = _mm_mul_pd(iq2,jq0);
1219 qq21 = _mm_mul_pd(iq2,jq1);
1220 qq22 = _mm_mul_pd(iq2,jq2);
1222 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
1223 rcutoff_scalar = fr->ic->rcoulomb;
1224 rcutoff = _mm_set1_pd(rcutoff_scalar);
1225 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
1227 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
1228 rvdw = _mm_set1_pd(fr->ic->rvdw);
1230 /* Avoid stupid compiler warnings */
1232 j_coord_offsetA = 0;
1233 j_coord_offsetB = 0;
1238 /* Start outer loop over neighborlists */
1239 for(iidx=0; iidx<nri; iidx++)
1241 /* Load shift vector for this list */
1242 i_shift_offset = DIM*shiftidx[iidx];
1244 /* Load limits for loop over neighbors */
1245 j_index_start = jindex[iidx];
1246 j_index_end = jindex[iidx+1];
1248 /* Get outer coordinate index */
1250 i_coord_offset = DIM*inr;
1252 /* Load i particle coords and add shift vector */
1253 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1254 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1256 fix0 = _mm_setzero_pd();
1257 fiy0 = _mm_setzero_pd();
1258 fiz0 = _mm_setzero_pd();
1259 fix1 = _mm_setzero_pd();
1260 fiy1 = _mm_setzero_pd();
1261 fiz1 = _mm_setzero_pd();
1262 fix2 = _mm_setzero_pd();
1263 fiy2 = _mm_setzero_pd();
1264 fiz2 = _mm_setzero_pd();
1266 /* Start inner kernel loop */
1267 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
1270 /* Get j neighbor index, and coordinate index */
1272 jnrB = jjnr[jidx+1];
1273 j_coord_offsetA = DIM*jnrA;
1274 j_coord_offsetB = DIM*jnrB;
1276 /* load j atom coordinates */
1277 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1278 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1280 /* Calculate displacement vector */
1281 dx00 = _mm_sub_pd(ix0,jx0);
1282 dy00 = _mm_sub_pd(iy0,jy0);
1283 dz00 = _mm_sub_pd(iz0,jz0);
1284 dx01 = _mm_sub_pd(ix0,jx1);
1285 dy01 = _mm_sub_pd(iy0,jy1);
1286 dz01 = _mm_sub_pd(iz0,jz1);
1287 dx02 = _mm_sub_pd(ix0,jx2);
1288 dy02 = _mm_sub_pd(iy0,jy2);
1289 dz02 = _mm_sub_pd(iz0,jz2);
1290 dx10 = _mm_sub_pd(ix1,jx0);
1291 dy10 = _mm_sub_pd(iy1,jy0);
1292 dz10 = _mm_sub_pd(iz1,jz0);
1293 dx11 = _mm_sub_pd(ix1,jx1);
1294 dy11 = _mm_sub_pd(iy1,jy1);
1295 dz11 = _mm_sub_pd(iz1,jz1);
1296 dx12 = _mm_sub_pd(ix1,jx2);
1297 dy12 = _mm_sub_pd(iy1,jy2);
1298 dz12 = _mm_sub_pd(iz1,jz2);
1299 dx20 = _mm_sub_pd(ix2,jx0);
1300 dy20 = _mm_sub_pd(iy2,jy0);
1301 dz20 = _mm_sub_pd(iz2,jz0);
1302 dx21 = _mm_sub_pd(ix2,jx1);
1303 dy21 = _mm_sub_pd(iy2,jy1);
1304 dz21 = _mm_sub_pd(iz2,jz1);
1305 dx22 = _mm_sub_pd(ix2,jx2);
1306 dy22 = _mm_sub_pd(iy2,jy2);
1307 dz22 = _mm_sub_pd(iz2,jz2);
1309 /* Calculate squared distance and things based on it */
1310 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1311 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1312 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1313 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1314 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1315 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1316 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1317 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1318 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1320 rinv00 = sse2_invsqrt_d(rsq00);
1321 rinv01 = sse2_invsqrt_d(rsq01);
1322 rinv02 = sse2_invsqrt_d(rsq02);
1323 rinv10 = sse2_invsqrt_d(rsq10);
1324 rinv11 = sse2_invsqrt_d(rsq11);
1325 rinv12 = sse2_invsqrt_d(rsq12);
1326 rinv20 = sse2_invsqrt_d(rsq20);
1327 rinv21 = sse2_invsqrt_d(rsq21);
1328 rinv22 = sse2_invsqrt_d(rsq22);
1330 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1331 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1332 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1333 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1334 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1335 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1336 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1337 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1338 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1340 fjx0 = _mm_setzero_pd();
1341 fjy0 = _mm_setzero_pd();
1342 fjz0 = _mm_setzero_pd();
1343 fjx1 = _mm_setzero_pd();
1344 fjy1 = _mm_setzero_pd();
1345 fjz1 = _mm_setzero_pd();
1346 fjx2 = _mm_setzero_pd();
1347 fjy2 = _mm_setzero_pd();
1348 fjz2 = _mm_setzero_pd();
1350 /**************************
1351 * CALCULATE INTERACTIONS *
1352 **************************/
1354 if (gmx_mm_any_lt(rsq00,rcutoff2))
1357 /* REACTION-FIELD ELECTROSTATICS */
1358 felec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_mul_pd(rinv00,rinvsq00),krf2));
1360 /* LENNARD-JONES DISPERSION/REPULSION */
1362 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1363 fvdw = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1365 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1367 fscal = _mm_add_pd(felec,fvdw);
1369 fscal = _mm_and_pd(fscal,cutoff_mask);
1371 /* Calculate temporary vectorial force */
1372 tx = _mm_mul_pd(fscal,dx00);
1373 ty = _mm_mul_pd(fscal,dy00);
1374 tz = _mm_mul_pd(fscal,dz00);
1376 /* Update vectorial force */
1377 fix0 = _mm_add_pd(fix0,tx);
1378 fiy0 = _mm_add_pd(fiy0,ty);
1379 fiz0 = _mm_add_pd(fiz0,tz);
1381 fjx0 = _mm_add_pd(fjx0,tx);
1382 fjy0 = _mm_add_pd(fjy0,ty);
1383 fjz0 = _mm_add_pd(fjz0,tz);
1387 /**************************
1388 * CALCULATE INTERACTIONS *
1389 **************************/
1391 if (gmx_mm_any_lt(rsq01,rcutoff2))
1394 /* REACTION-FIELD ELECTROSTATICS */
1395 felec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_mul_pd(rinv01,rinvsq01),krf2));
1397 cutoff_mask = _mm_cmplt_pd(rsq01,rcutoff2);
1401 fscal = _mm_and_pd(fscal,cutoff_mask);
1403 /* Calculate temporary vectorial force */
1404 tx = _mm_mul_pd(fscal,dx01);
1405 ty = _mm_mul_pd(fscal,dy01);
1406 tz = _mm_mul_pd(fscal,dz01);
1408 /* Update vectorial force */
1409 fix0 = _mm_add_pd(fix0,tx);
1410 fiy0 = _mm_add_pd(fiy0,ty);
1411 fiz0 = _mm_add_pd(fiz0,tz);
1413 fjx1 = _mm_add_pd(fjx1,tx);
1414 fjy1 = _mm_add_pd(fjy1,ty);
1415 fjz1 = _mm_add_pd(fjz1,tz);
1419 /**************************
1420 * CALCULATE INTERACTIONS *
1421 **************************/
1423 if (gmx_mm_any_lt(rsq02,rcutoff2))
1426 /* REACTION-FIELD ELECTROSTATICS */
1427 felec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_mul_pd(rinv02,rinvsq02),krf2));
1429 cutoff_mask = _mm_cmplt_pd(rsq02,rcutoff2);
1433 fscal = _mm_and_pd(fscal,cutoff_mask);
1435 /* Calculate temporary vectorial force */
1436 tx = _mm_mul_pd(fscal,dx02);
1437 ty = _mm_mul_pd(fscal,dy02);
1438 tz = _mm_mul_pd(fscal,dz02);
1440 /* Update vectorial force */
1441 fix0 = _mm_add_pd(fix0,tx);
1442 fiy0 = _mm_add_pd(fiy0,ty);
1443 fiz0 = _mm_add_pd(fiz0,tz);
1445 fjx2 = _mm_add_pd(fjx2,tx);
1446 fjy2 = _mm_add_pd(fjy2,ty);
1447 fjz2 = _mm_add_pd(fjz2,tz);
1451 /**************************
1452 * CALCULATE INTERACTIONS *
1453 **************************/
1455 if (gmx_mm_any_lt(rsq10,rcutoff2))
1458 /* REACTION-FIELD ELECTROSTATICS */
1459 felec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_mul_pd(rinv10,rinvsq10),krf2));
1461 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1465 fscal = _mm_and_pd(fscal,cutoff_mask);
1467 /* Calculate temporary vectorial force */
1468 tx = _mm_mul_pd(fscal,dx10);
1469 ty = _mm_mul_pd(fscal,dy10);
1470 tz = _mm_mul_pd(fscal,dz10);
1472 /* Update vectorial force */
1473 fix1 = _mm_add_pd(fix1,tx);
1474 fiy1 = _mm_add_pd(fiy1,ty);
1475 fiz1 = _mm_add_pd(fiz1,tz);
1477 fjx0 = _mm_add_pd(fjx0,tx);
1478 fjy0 = _mm_add_pd(fjy0,ty);
1479 fjz0 = _mm_add_pd(fjz0,tz);
1483 /**************************
1484 * CALCULATE INTERACTIONS *
1485 **************************/
1487 if (gmx_mm_any_lt(rsq11,rcutoff2))
1490 /* REACTION-FIELD ELECTROSTATICS */
1491 felec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_mul_pd(rinv11,rinvsq11),krf2));
1493 cutoff_mask = _mm_cmplt_pd(rsq11,rcutoff2);
1497 fscal = _mm_and_pd(fscal,cutoff_mask);
1499 /* Calculate temporary vectorial force */
1500 tx = _mm_mul_pd(fscal,dx11);
1501 ty = _mm_mul_pd(fscal,dy11);
1502 tz = _mm_mul_pd(fscal,dz11);
1504 /* Update vectorial force */
1505 fix1 = _mm_add_pd(fix1,tx);
1506 fiy1 = _mm_add_pd(fiy1,ty);
1507 fiz1 = _mm_add_pd(fiz1,tz);
1509 fjx1 = _mm_add_pd(fjx1,tx);
1510 fjy1 = _mm_add_pd(fjy1,ty);
1511 fjz1 = _mm_add_pd(fjz1,tz);
1515 /**************************
1516 * CALCULATE INTERACTIONS *
1517 **************************/
1519 if (gmx_mm_any_lt(rsq12,rcutoff2))
1522 /* REACTION-FIELD ELECTROSTATICS */
1523 felec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_mul_pd(rinv12,rinvsq12),krf2));
1525 cutoff_mask = _mm_cmplt_pd(rsq12,rcutoff2);
1529 fscal = _mm_and_pd(fscal,cutoff_mask);
1531 /* Calculate temporary vectorial force */
1532 tx = _mm_mul_pd(fscal,dx12);
1533 ty = _mm_mul_pd(fscal,dy12);
1534 tz = _mm_mul_pd(fscal,dz12);
1536 /* Update vectorial force */
1537 fix1 = _mm_add_pd(fix1,tx);
1538 fiy1 = _mm_add_pd(fiy1,ty);
1539 fiz1 = _mm_add_pd(fiz1,tz);
1541 fjx2 = _mm_add_pd(fjx2,tx);
1542 fjy2 = _mm_add_pd(fjy2,ty);
1543 fjz2 = _mm_add_pd(fjz2,tz);
1547 /**************************
1548 * CALCULATE INTERACTIONS *
1549 **************************/
1551 if (gmx_mm_any_lt(rsq20,rcutoff2))
1554 /* REACTION-FIELD ELECTROSTATICS */
1555 felec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_mul_pd(rinv20,rinvsq20),krf2));
1557 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1561 fscal = _mm_and_pd(fscal,cutoff_mask);
1563 /* Calculate temporary vectorial force */
1564 tx = _mm_mul_pd(fscal,dx20);
1565 ty = _mm_mul_pd(fscal,dy20);
1566 tz = _mm_mul_pd(fscal,dz20);
1568 /* Update vectorial force */
1569 fix2 = _mm_add_pd(fix2,tx);
1570 fiy2 = _mm_add_pd(fiy2,ty);
1571 fiz2 = _mm_add_pd(fiz2,tz);
1573 fjx0 = _mm_add_pd(fjx0,tx);
1574 fjy0 = _mm_add_pd(fjy0,ty);
1575 fjz0 = _mm_add_pd(fjz0,tz);
1579 /**************************
1580 * CALCULATE INTERACTIONS *
1581 **************************/
1583 if (gmx_mm_any_lt(rsq21,rcutoff2))
1586 /* REACTION-FIELD ELECTROSTATICS */
1587 felec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_mul_pd(rinv21,rinvsq21),krf2));
1589 cutoff_mask = _mm_cmplt_pd(rsq21,rcutoff2);
1593 fscal = _mm_and_pd(fscal,cutoff_mask);
1595 /* Calculate temporary vectorial force */
1596 tx = _mm_mul_pd(fscal,dx21);
1597 ty = _mm_mul_pd(fscal,dy21);
1598 tz = _mm_mul_pd(fscal,dz21);
1600 /* Update vectorial force */
1601 fix2 = _mm_add_pd(fix2,tx);
1602 fiy2 = _mm_add_pd(fiy2,ty);
1603 fiz2 = _mm_add_pd(fiz2,tz);
1605 fjx1 = _mm_add_pd(fjx1,tx);
1606 fjy1 = _mm_add_pd(fjy1,ty);
1607 fjz1 = _mm_add_pd(fjz1,tz);
1611 /**************************
1612 * CALCULATE INTERACTIONS *
1613 **************************/
1615 if (gmx_mm_any_lt(rsq22,rcutoff2))
1618 /* REACTION-FIELD ELECTROSTATICS */
1619 felec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_mul_pd(rinv22,rinvsq22),krf2));
1621 cutoff_mask = _mm_cmplt_pd(rsq22,rcutoff2);
1625 fscal = _mm_and_pd(fscal,cutoff_mask);
1627 /* Calculate temporary vectorial force */
1628 tx = _mm_mul_pd(fscal,dx22);
1629 ty = _mm_mul_pd(fscal,dy22);
1630 tz = _mm_mul_pd(fscal,dz22);
1632 /* Update vectorial force */
1633 fix2 = _mm_add_pd(fix2,tx);
1634 fiy2 = _mm_add_pd(fiy2,ty);
1635 fiz2 = _mm_add_pd(fiz2,tz);
1637 fjx2 = _mm_add_pd(fjx2,tx);
1638 fjy2 = _mm_add_pd(fjy2,ty);
1639 fjz2 = _mm_add_pd(fjz2,tz);
1643 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1645 /* Inner loop uses 277 flops */
1648 if(jidx<j_index_end)
1652 j_coord_offsetA = DIM*jnrA;
1654 /* load j atom coordinates */
1655 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1656 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1658 /* Calculate displacement vector */
1659 dx00 = _mm_sub_pd(ix0,jx0);
1660 dy00 = _mm_sub_pd(iy0,jy0);
1661 dz00 = _mm_sub_pd(iz0,jz0);
1662 dx01 = _mm_sub_pd(ix0,jx1);
1663 dy01 = _mm_sub_pd(iy0,jy1);
1664 dz01 = _mm_sub_pd(iz0,jz1);
1665 dx02 = _mm_sub_pd(ix0,jx2);
1666 dy02 = _mm_sub_pd(iy0,jy2);
1667 dz02 = _mm_sub_pd(iz0,jz2);
1668 dx10 = _mm_sub_pd(ix1,jx0);
1669 dy10 = _mm_sub_pd(iy1,jy0);
1670 dz10 = _mm_sub_pd(iz1,jz0);
1671 dx11 = _mm_sub_pd(ix1,jx1);
1672 dy11 = _mm_sub_pd(iy1,jy1);
1673 dz11 = _mm_sub_pd(iz1,jz1);
1674 dx12 = _mm_sub_pd(ix1,jx2);
1675 dy12 = _mm_sub_pd(iy1,jy2);
1676 dz12 = _mm_sub_pd(iz1,jz2);
1677 dx20 = _mm_sub_pd(ix2,jx0);
1678 dy20 = _mm_sub_pd(iy2,jy0);
1679 dz20 = _mm_sub_pd(iz2,jz0);
1680 dx21 = _mm_sub_pd(ix2,jx1);
1681 dy21 = _mm_sub_pd(iy2,jy1);
1682 dz21 = _mm_sub_pd(iz2,jz1);
1683 dx22 = _mm_sub_pd(ix2,jx2);
1684 dy22 = _mm_sub_pd(iy2,jy2);
1685 dz22 = _mm_sub_pd(iz2,jz2);
1687 /* Calculate squared distance and things based on it */
1688 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1689 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1690 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1691 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1692 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1693 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1694 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1695 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1696 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1698 rinv00 = sse2_invsqrt_d(rsq00);
1699 rinv01 = sse2_invsqrt_d(rsq01);
1700 rinv02 = sse2_invsqrt_d(rsq02);
1701 rinv10 = sse2_invsqrt_d(rsq10);
1702 rinv11 = sse2_invsqrt_d(rsq11);
1703 rinv12 = sse2_invsqrt_d(rsq12);
1704 rinv20 = sse2_invsqrt_d(rsq20);
1705 rinv21 = sse2_invsqrt_d(rsq21);
1706 rinv22 = sse2_invsqrt_d(rsq22);
1708 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1709 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1710 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1711 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1712 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1713 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1714 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1715 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1716 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1718 fjx0 = _mm_setzero_pd();
1719 fjy0 = _mm_setzero_pd();
1720 fjz0 = _mm_setzero_pd();
1721 fjx1 = _mm_setzero_pd();
1722 fjy1 = _mm_setzero_pd();
1723 fjz1 = _mm_setzero_pd();
1724 fjx2 = _mm_setzero_pd();
1725 fjy2 = _mm_setzero_pd();
1726 fjz2 = _mm_setzero_pd();
1728 /**************************
1729 * CALCULATE INTERACTIONS *
1730 **************************/
1732 if (gmx_mm_any_lt(rsq00,rcutoff2))
1735 /* REACTION-FIELD ELECTROSTATICS */
1736 felec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_mul_pd(rinv00,rinvsq00),krf2));
1738 /* LENNARD-JONES DISPERSION/REPULSION */
1740 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1741 fvdw = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1743 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1745 fscal = _mm_add_pd(felec,fvdw);
1747 fscal = _mm_and_pd(fscal,cutoff_mask);
1749 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1751 /* Calculate temporary vectorial force */
1752 tx = _mm_mul_pd(fscal,dx00);
1753 ty = _mm_mul_pd(fscal,dy00);
1754 tz = _mm_mul_pd(fscal,dz00);
1756 /* Update vectorial force */
1757 fix0 = _mm_add_pd(fix0,tx);
1758 fiy0 = _mm_add_pd(fiy0,ty);
1759 fiz0 = _mm_add_pd(fiz0,tz);
1761 fjx0 = _mm_add_pd(fjx0,tx);
1762 fjy0 = _mm_add_pd(fjy0,ty);
1763 fjz0 = _mm_add_pd(fjz0,tz);
1767 /**************************
1768 * CALCULATE INTERACTIONS *
1769 **************************/
1771 if (gmx_mm_any_lt(rsq01,rcutoff2))
1774 /* REACTION-FIELD ELECTROSTATICS */
1775 felec = _mm_mul_pd(qq01,_mm_sub_pd(_mm_mul_pd(rinv01,rinvsq01),krf2));
1777 cutoff_mask = _mm_cmplt_pd(rsq01,rcutoff2);
1781 fscal = _mm_and_pd(fscal,cutoff_mask);
1783 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1785 /* Calculate temporary vectorial force */
1786 tx = _mm_mul_pd(fscal,dx01);
1787 ty = _mm_mul_pd(fscal,dy01);
1788 tz = _mm_mul_pd(fscal,dz01);
1790 /* Update vectorial force */
1791 fix0 = _mm_add_pd(fix0,tx);
1792 fiy0 = _mm_add_pd(fiy0,ty);
1793 fiz0 = _mm_add_pd(fiz0,tz);
1795 fjx1 = _mm_add_pd(fjx1,tx);
1796 fjy1 = _mm_add_pd(fjy1,ty);
1797 fjz1 = _mm_add_pd(fjz1,tz);
1801 /**************************
1802 * CALCULATE INTERACTIONS *
1803 **************************/
1805 if (gmx_mm_any_lt(rsq02,rcutoff2))
1808 /* REACTION-FIELD ELECTROSTATICS */
1809 felec = _mm_mul_pd(qq02,_mm_sub_pd(_mm_mul_pd(rinv02,rinvsq02),krf2));
1811 cutoff_mask = _mm_cmplt_pd(rsq02,rcutoff2);
1815 fscal = _mm_and_pd(fscal,cutoff_mask);
1817 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1819 /* Calculate temporary vectorial force */
1820 tx = _mm_mul_pd(fscal,dx02);
1821 ty = _mm_mul_pd(fscal,dy02);
1822 tz = _mm_mul_pd(fscal,dz02);
1824 /* Update vectorial force */
1825 fix0 = _mm_add_pd(fix0,tx);
1826 fiy0 = _mm_add_pd(fiy0,ty);
1827 fiz0 = _mm_add_pd(fiz0,tz);
1829 fjx2 = _mm_add_pd(fjx2,tx);
1830 fjy2 = _mm_add_pd(fjy2,ty);
1831 fjz2 = _mm_add_pd(fjz2,tz);
1835 /**************************
1836 * CALCULATE INTERACTIONS *
1837 **************************/
1839 if (gmx_mm_any_lt(rsq10,rcutoff2))
1842 /* REACTION-FIELD ELECTROSTATICS */
1843 felec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_mul_pd(rinv10,rinvsq10),krf2));
1845 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1849 fscal = _mm_and_pd(fscal,cutoff_mask);
1851 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1853 /* Calculate temporary vectorial force */
1854 tx = _mm_mul_pd(fscal,dx10);
1855 ty = _mm_mul_pd(fscal,dy10);
1856 tz = _mm_mul_pd(fscal,dz10);
1858 /* Update vectorial force */
1859 fix1 = _mm_add_pd(fix1,tx);
1860 fiy1 = _mm_add_pd(fiy1,ty);
1861 fiz1 = _mm_add_pd(fiz1,tz);
1863 fjx0 = _mm_add_pd(fjx0,tx);
1864 fjy0 = _mm_add_pd(fjy0,ty);
1865 fjz0 = _mm_add_pd(fjz0,tz);
1869 /**************************
1870 * CALCULATE INTERACTIONS *
1871 **************************/
1873 if (gmx_mm_any_lt(rsq11,rcutoff2))
1876 /* REACTION-FIELD ELECTROSTATICS */
1877 felec = _mm_mul_pd(qq11,_mm_sub_pd(_mm_mul_pd(rinv11,rinvsq11),krf2));
1879 cutoff_mask = _mm_cmplt_pd(rsq11,rcutoff2);
1883 fscal = _mm_and_pd(fscal,cutoff_mask);
1885 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1887 /* Calculate temporary vectorial force */
1888 tx = _mm_mul_pd(fscal,dx11);
1889 ty = _mm_mul_pd(fscal,dy11);
1890 tz = _mm_mul_pd(fscal,dz11);
1892 /* Update vectorial force */
1893 fix1 = _mm_add_pd(fix1,tx);
1894 fiy1 = _mm_add_pd(fiy1,ty);
1895 fiz1 = _mm_add_pd(fiz1,tz);
1897 fjx1 = _mm_add_pd(fjx1,tx);
1898 fjy1 = _mm_add_pd(fjy1,ty);
1899 fjz1 = _mm_add_pd(fjz1,tz);
1903 /**************************
1904 * CALCULATE INTERACTIONS *
1905 **************************/
1907 if (gmx_mm_any_lt(rsq12,rcutoff2))
1910 /* REACTION-FIELD ELECTROSTATICS */
1911 felec = _mm_mul_pd(qq12,_mm_sub_pd(_mm_mul_pd(rinv12,rinvsq12),krf2));
1913 cutoff_mask = _mm_cmplt_pd(rsq12,rcutoff2);
1917 fscal = _mm_and_pd(fscal,cutoff_mask);
1919 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1921 /* Calculate temporary vectorial force */
1922 tx = _mm_mul_pd(fscal,dx12);
1923 ty = _mm_mul_pd(fscal,dy12);
1924 tz = _mm_mul_pd(fscal,dz12);
1926 /* Update vectorial force */
1927 fix1 = _mm_add_pd(fix1,tx);
1928 fiy1 = _mm_add_pd(fiy1,ty);
1929 fiz1 = _mm_add_pd(fiz1,tz);
1931 fjx2 = _mm_add_pd(fjx2,tx);
1932 fjy2 = _mm_add_pd(fjy2,ty);
1933 fjz2 = _mm_add_pd(fjz2,tz);
1937 /**************************
1938 * CALCULATE INTERACTIONS *
1939 **************************/
1941 if (gmx_mm_any_lt(rsq20,rcutoff2))
1944 /* REACTION-FIELD ELECTROSTATICS */
1945 felec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_mul_pd(rinv20,rinvsq20),krf2));
1947 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1951 fscal = _mm_and_pd(fscal,cutoff_mask);
1953 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1955 /* Calculate temporary vectorial force */
1956 tx = _mm_mul_pd(fscal,dx20);
1957 ty = _mm_mul_pd(fscal,dy20);
1958 tz = _mm_mul_pd(fscal,dz20);
1960 /* Update vectorial force */
1961 fix2 = _mm_add_pd(fix2,tx);
1962 fiy2 = _mm_add_pd(fiy2,ty);
1963 fiz2 = _mm_add_pd(fiz2,tz);
1965 fjx0 = _mm_add_pd(fjx0,tx);
1966 fjy0 = _mm_add_pd(fjy0,ty);
1967 fjz0 = _mm_add_pd(fjz0,tz);
1971 /**************************
1972 * CALCULATE INTERACTIONS *
1973 **************************/
1975 if (gmx_mm_any_lt(rsq21,rcutoff2))
1978 /* REACTION-FIELD ELECTROSTATICS */
1979 felec = _mm_mul_pd(qq21,_mm_sub_pd(_mm_mul_pd(rinv21,rinvsq21),krf2));
1981 cutoff_mask = _mm_cmplt_pd(rsq21,rcutoff2);
1985 fscal = _mm_and_pd(fscal,cutoff_mask);
1987 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1989 /* Calculate temporary vectorial force */
1990 tx = _mm_mul_pd(fscal,dx21);
1991 ty = _mm_mul_pd(fscal,dy21);
1992 tz = _mm_mul_pd(fscal,dz21);
1994 /* Update vectorial force */
1995 fix2 = _mm_add_pd(fix2,tx);
1996 fiy2 = _mm_add_pd(fiy2,ty);
1997 fiz2 = _mm_add_pd(fiz2,tz);
1999 fjx1 = _mm_add_pd(fjx1,tx);
2000 fjy1 = _mm_add_pd(fjy1,ty);
2001 fjz1 = _mm_add_pd(fjz1,tz);
2005 /**************************
2006 * CALCULATE INTERACTIONS *
2007 **************************/
2009 if (gmx_mm_any_lt(rsq22,rcutoff2))
2012 /* REACTION-FIELD ELECTROSTATICS */
2013 felec = _mm_mul_pd(qq22,_mm_sub_pd(_mm_mul_pd(rinv22,rinvsq22),krf2));
2015 cutoff_mask = _mm_cmplt_pd(rsq22,rcutoff2);
2019 fscal = _mm_and_pd(fscal,cutoff_mask);
2021 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2023 /* Calculate temporary vectorial force */
2024 tx = _mm_mul_pd(fscal,dx22);
2025 ty = _mm_mul_pd(fscal,dy22);
2026 tz = _mm_mul_pd(fscal,dz22);
2028 /* Update vectorial force */
2029 fix2 = _mm_add_pd(fix2,tx);
2030 fiy2 = _mm_add_pd(fiy2,ty);
2031 fiz2 = _mm_add_pd(fiz2,tz);
2033 fjx2 = _mm_add_pd(fjx2,tx);
2034 fjy2 = _mm_add_pd(fjy2,ty);
2035 fjz2 = _mm_add_pd(fjz2,tz);
2039 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2041 /* Inner loop uses 277 flops */
2044 /* End of innermost loop */
2046 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2047 f+i_coord_offset,fshift+i_shift_offset);
2049 /* Increment number of inner iterations */
2050 inneriter += j_index_end - j_index_start;
2052 /* Outer loop uses 18 flops */
2055 /* Increment number of outer iterations */
2058 /* Update outer/inner flops */
2060 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*277);