2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017,2018, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomW4P1_VF_sse2_double
51 * Electrostatics interaction: Ewald
52 * VdW interaction: None
53 * Geometry: Water4-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecEw_VdwNone_GeomW4P1_VF_sse2_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
82 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
84 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
85 int vdwjidx0A,vdwjidx0B;
86 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
87 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
88 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
89 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
90 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
93 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
95 __m128d dummy_mask,cutoff_mask;
96 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
97 __m128d one = _mm_set1_pd(1.0);
98 __m128d two = _mm_set1_pd(2.0);
104 jindex = nlist->jindex;
106 shiftidx = nlist->shift;
108 shiftvec = fr->shift_vec[0];
109 fshift = fr->fshift[0];
110 facel = _mm_set1_pd(fr->ic->epsfac);
111 charge = mdatoms->chargeA;
113 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
114 ewtab = fr->ic->tabq_coul_FDV0;
115 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
116 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
118 /* Setup water-specific parameters */
119 inr = nlist->iinr[0];
120 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
121 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
122 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
124 /* Avoid stupid compiler warnings */
132 /* Start outer loop over neighborlists */
133 for(iidx=0; iidx<nri; iidx++)
135 /* Load shift vector for this list */
136 i_shift_offset = DIM*shiftidx[iidx];
138 /* Load limits for loop over neighbors */
139 j_index_start = jindex[iidx];
140 j_index_end = jindex[iidx+1];
142 /* Get outer coordinate index */
144 i_coord_offset = DIM*inr;
146 /* Load i particle coords and add shift vector */
147 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset+DIM,
148 &ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
150 fix1 = _mm_setzero_pd();
151 fiy1 = _mm_setzero_pd();
152 fiz1 = _mm_setzero_pd();
153 fix2 = _mm_setzero_pd();
154 fiy2 = _mm_setzero_pd();
155 fiz2 = _mm_setzero_pd();
156 fix3 = _mm_setzero_pd();
157 fiy3 = _mm_setzero_pd();
158 fiz3 = _mm_setzero_pd();
160 /* Reset potential sums */
161 velecsum = _mm_setzero_pd();
163 /* Start inner kernel loop */
164 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
167 /* Get j neighbor index, and coordinate index */
170 j_coord_offsetA = DIM*jnrA;
171 j_coord_offsetB = DIM*jnrB;
173 /* load j atom coordinates */
174 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
177 /* Calculate displacement vector */
178 dx10 = _mm_sub_pd(ix1,jx0);
179 dy10 = _mm_sub_pd(iy1,jy0);
180 dz10 = _mm_sub_pd(iz1,jz0);
181 dx20 = _mm_sub_pd(ix2,jx0);
182 dy20 = _mm_sub_pd(iy2,jy0);
183 dz20 = _mm_sub_pd(iz2,jz0);
184 dx30 = _mm_sub_pd(ix3,jx0);
185 dy30 = _mm_sub_pd(iy3,jy0);
186 dz30 = _mm_sub_pd(iz3,jz0);
188 /* Calculate squared distance and things based on it */
189 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
190 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
191 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
193 rinv10 = sse2_invsqrt_d(rsq10);
194 rinv20 = sse2_invsqrt_d(rsq20);
195 rinv30 = sse2_invsqrt_d(rsq30);
197 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
198 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
199 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
201 /* Load parameters for j particles */
202 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
204 fjx0 = _mm_setzero_pd();
205 fjy0 = _mm_setzero_pd();
206 fjz0 = _mm_setzero_pd();
208 /**************************
209 * CALCULATE INTERACTIONS *
210 **************************/
212 r10 = _mm_mul_pd(rsq10,rinv10);
214 /* Compute parameters for interactions between i and j atoms */
215 qq10 = _mm_mul_pd(iq1,jq0);
217 /* EWALD ELECTROSTATICS */
219 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
220 ewrt = _mm_mul_pd(r10,ewtabscale);
221 ewitab = _mm_cvttpd_epi32(ewrt);
222 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
223 ewitab = _mm_slli_epi32(ewitab,2);
224 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
225 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
226 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
227 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
228 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
229 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
230 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
231 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
232 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
233 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
235 /* Update potential sum for this i atom from the interaction with this j atom. */
236 velecsum = _mm_add_pd(velecsum,velec);
240 /* Calculate temporary vectorial force */
241 tx = _mm_mul_pd(fscal,dx10);
242 ty = _mm_mul_pd(fscal,dy10);
243 tz = _mm_mul_pd(fscal,dz10);
245 /* Update vectorial force */
246 fix1 = _mm_add_pd(fix1,tx);
247 fiy1 = _mm_add_pd(fiy1,ty);
248 fiz1 = _mm_add_pd(fiz1,tz);
250 fjx0 = _mm_add_pd(fjx0,tx);
251 fjy0 = _mm_add_pd(fjy0,ty);
252 fjz0 = _mm_add_pd(fjz0,tz);
254 /**************************
255 * CALCULATE INTERACTIONS *
256 **************************/
258 r20 = _mm_mul_pd(rsq20,rinv20);
260 /* Compute parameters for interactions between i and j atoms */
261 qq20 = _mm_mul_pd(iq2,jq0);
263 /* EWALD ELECTROSTATICS */
265 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
266 ewrt = _mm_mul_pd(r20,ewtabscale);
267 ewitab = _mm_cvttpd_epi32(ewrt);
268 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
269 ewitab = _mm_slli_epi32(ewitab,2);
270 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
271 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
272 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
273 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
274 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
275 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
276 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
277 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
278 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
279 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
281 /* Update potential sum for this i atom from the interaction with this j atom. */
282 velecsum = _mm_add_pd(velecsum,velec);
286 /* Calculate temporary vectorial force */
287 tx = _mm_mul_pd(fscal,dx20);
288 ty = _mm_mul_pd(fscal,dy20);
289 tz = _mm_mul_pd(fscal,dz20);
291 /* Update vectorial force */
292 fix2 = _mm_add_pd(fix2,tx);
293 fiy2 = _mm_add_pd(fiy2,ty);
294 fiz2 = _mm_add_pd(fiz2,tz);
296 fjx0 = _mm_add_pd(fjx0,tx);
297 fjy0 = _mm_add_pd(fjy0,ty);
298 fjz0 = _mm_add_pd(fjz0,tz);
300 /**************************
301 * CALCULATE INTERACTIONS *
302 **************************/
304 r30 = _mm_mul_pd(rsq30,rinv30);
306 /* Compute parameters for interactions between i and j atoms */
307 qq30 = _mm_mul_pd(iq3,jq0);
309 /* EWALD ELECTROSTATICS */
311 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
312 ewrt = _mm_mul_pd(r30,ewtabscale);
313 ewitab = _mm_cvttpd_epi32(ewrt);
314 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
315 ewitab = _mm_slli_epi32(ewitab,2);
316 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
317 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
318 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
319 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
320 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
321 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
322 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
323 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
324 velec = _mm_mul_pd(qq30,_mm_sub_pd(rinv30,velec));
325 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
327 /* Update potential sum for this i atom from the interaction with this j atom. */
328 velecsum = _mm_add_pd(velecsum,velec);
332 /* Calculate temporary vectorial force */
333 tx = _mm_mul_pd(fscal,dx30);
334 ty = _mm_mul_pd(fscal,dy30);
335 tz = _mm_mul_pd(fscal,dz30);
337 /* Update vectorial force */
338 fix3 = _mm_add_pd(fix3,tx);
339 fiy3 = _mm_add_pd(fiy3,ty);
340 fiz3 = _mm_add_pd(fiz3,tz);
342 fjx0 = _mm_add_pd(fjx0,tx);
343 fjy0 = _mm_add_pd(fjy0,ty);
344 fjz0 = _mm_add_pd(fjz0,tz);
346 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
348 /* Inner loop uses 126 flops */
355 j_coord_offsetA = DIM*jnrA;
357 /* load j atom coordinates */
358 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
361 /* Calculate displacement vector */
362 dx10 = _mm_sub_pd(ix1,jx0);
363 dy10 = _mm_sub_pd(iy1,jy0);
364 dz10 = _mm_sub_pd(iz1,jz0);
365 dx20 = _mm_sub_pd(ix2,jx0);
366 dy20 = _mm_sub_pd(iy2,jy0);
367 dz20 = _mm_sub_pd(iz2,jz0);
368 dx30 = _mm_sub_pd(ix3,jx0);
369 dy30 = _mm_sub_pd(iy3,jy0);
370 dz30 = _mm_sub_pd(iz3,jz0);
372 /* Calculate squared distance and things based on it */
373 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
374 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
375 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
377 rinv10 = sse2_invsqrt_d(rsq10);
378 rinv20 = sse2_invsqrt_d(rsq20);
379 rinv30 = sse2_invsqrt_d(rsq30);
381 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
382 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
383 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
385 /* Load parameters for j particles */
386 jq0 = _mm_load_sd(charge+jnrA+0);
388 fjx0 = _mm_setzero_pd();
389 fjy0 = _mm_setzero_pd();
390 fjz0 = _mm_setzero_pd();
392 /**************************
393 * CALCULATE INTERACTIONS *
394 **************************/
396 r10 = _mm_mul_pd(rsq10,rinv10);
398 /* Compute parameters for interactions between i and j atoms */
399 qq10 = _mm_mul_pd(iq1,jq0);
401 /* EWALD ELECTROSTATICS */
403 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
404 ewrt = _mm_mul_pd(r10,ewtabscale);
405 ewitab = _mm_cvttpd_epi32(ewrt);
406 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
407 ewitab = _mm_slli_epi32(ewitab,2);
408 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
409 ewtabD = _mm_setzero_pd();
410 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
411 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
412 ewtabFn = _mm_setzero_pd();
413 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
414 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
415 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
416 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
417 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
419 /* Update potential sum for this i atom from the interaction with this j atom. */
420 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
421 velecsum = _mm_add_pd(velecsum,velec);
425 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
427 /* Calculate temporary vectorial force */
428 tx = _mm_mul_pd(fscal,dx10);
429 ty = _mm_mul_pd(fscal,dy10);
430 tz = _mm_mul_pd(fscal,dz10);
432 /* Update vectorial force */
433 fix1 = _mm_add_pd(fix1,tx);
434 fiy1 = _mm_add_pd(fiy1,ty);
435 fiz1 = _mm_add_pd(fiz1,tz);
437 fjx0 = _mm_add_pd(fjx0,tx);
438 fjy0 = _mm_add_pd(fjy0,ty);
439 fjz0 = _mm_add_pd(fjz0,tz);
441 /**************************
442 * CALCULATE INTERACTIONS *
443 **************************/
445 r20 = _mm_mul_pd(rsq20,rinv20);
447 /* Compute parameters for interactions between i and j atoms */
448 qq20 = _mm_mul_pd(iq2,jq0);
450 /* EWALD ELECTROSTATICS */
452 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
453 ewrt = _mm_mul_pd(r20,ewtabscale);
454 ewitab = _mm_cvttpd_epi32(ewrt);
455 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
456 ewitab = _mm_slli_epi32(ewitab,2);
457 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
458 ewtabD = _mm_setzero_pd();
459 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
460 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
461 ewtabFn = _mm_setzero_pd();
462 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
463 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
464 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
465 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
466 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
468 /* Update potential sum for this i atom from the interaction with this j atom. */
469 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
470 velecsum = _mm_add_pd(velecsum,velec);
474 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
476 /* Calculate temporary vectorial force */
477 tx = _mm_mul_pd(fscal,dx20);
478 ty = _mm_mul_pd(fscal,dy20);
479 tz = _mm_mul_pd(fscal,dz20);
481 /* Update vectorial force */
482 fix2 = _mm_add_pd(fix2,tx);
483 fiy2 = _mm_add_pd(fiy2,ty);
484 fiz2 = _mm_add_pd(fiz2,tz);
486 fjx0 = _mm_add_pd(fjx0,tx);
487 fjy0 = _mm_add_pd(fjy0,ty);
488 fjz0 = _mm_add_pd(fjz0,tz);
490 /**************************
491 * CALCULATE INTERACTIONS *
492 **************************/
494 r30 = _mm_mul_pd(rsq30,rinv30);
496 /* Compute parameters for interactions between i and j atoms */
497 qq30 = _mm_mul_pd(iq3,jq0);
499 /* EWALD ELECTROSTATICS */
501 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
502 ewrt = _mm_mul_pd(r30,ewtabscale);
503 ewitab = _mm_cvttpd_epi32(ewrt);
504 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
505 ewitab = _mm_slli_epi32(ewitab,2);
506 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
507 ewtabD = _mm_setzero_pd();
508 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
509 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
510 ewtabFn = _mm_setzero_pd();
511 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
512 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
513 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
514 velec = _mm_mul_pd(qq30,_mm_sub_pd(rinv30,velec));
515 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
517 /* Update potential sum for this i atom from the interaction with this j atom. */
518 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
519 velecsum = _mm_add_pd(velecsum,velec);
523 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
525 /* Calculate temporary vectorial force */
526 tx = _mm_mul_pd(fscal,dx30);
527 ty = _mm_mul_pd(fscal,dy30);
528 tz = _mm_mul_pd(fscal,dz30);
530 /* Update vectorial force */
531 fix3 = _mm_add_pd(fix3,tx);
532 fiy3 = _mm_add_pd(fiy3,ty);
533 fiz3 = _mm_add_pd(fiz3,tz);
535 fjx0 = _mm_add_pd(fjx0,tx);
536 fjy0 = _mm_add_pd(fjy0,ty);
537 fjz0 = _mm_add_pd(fjz0,tz);
539 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
541 /* Inner loop uses 126 flops */
544 /* End of innermost loop */
546 gmx_mm_update_iforce_3atom_swizzle_pd(fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
547 f+i_coord_offset+DIM,fshift+i_shift_offset);
550 /* Update potential energies */
551 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
553 /* Increment number of inner iterations */
554 inneriter += j_index_end - j_index_start;
556 /* Outer loop uses 19 flops */
559 /* Increment number of outer iterations */
562 /* Update outer/inner flops */
564 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W4_VF,outeriter*19 + inneriter*126);
567 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomW4P1_F_sse2_double
568 * Electrostatics interaction: Ewald
569 * VdW interaction: None
570 * Geometry: Water4-Particle
571 * Calculate force/pot: Force
574 nb_kernel_ElecEw_VdwNone_GeomW4P1_F_sse2_double
575 (t_nblist * gmx_restrict nlist,
576 rvec * gmx_restrict xx,
577 rvec * gmx_restrict ff,
578 struct t_forcerec * gmx_restrict fr,
579 t_mdatoms * gmx_restrict mdatoms,
580 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
581 t_nrnb * gmx_restrict nrnb)
583 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
584 * just 0 for non-waters.
585 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
586 * jnr indices corresponding to data put in the four positions in the SIMD register.
588 int i_shift_offset,i_coord_offset,outeriter,inneriter;
589 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
591 int j_coord_offsetA,j_coord_offsetB;
592 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
594 real *shiftvec,*fshift,*x,*f;
595 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
597 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
599 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
601 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
602 int vdwjidx0A,vdwjidx0B;
603 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
604 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
605 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
606 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
607 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
610 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
612 __m128d dummy_mask,cutoff_mask;
613 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
614 __m128d one = _mm_set1_pd(1.0);
615 __m128d two = _mm_set1_pd(2.0);
621 jindex = nlist->jindex;
623 shiftidx = nlist->shift;
625 shiftvec = fr->shift_vec[0];
626 fshift = fr->fshift[0];
627 facel = _mm_set1_pd(fr->ic->epsfac);
628 charge = mdatoms->chargeA;
630 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
631 ewtab = fr->ic->tabq_coul_F;
632 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
633 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
635 /* Setup water-specific parameters */
636 inr = nlist->iinr[0];
637 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
638 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
639 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
641 /* Avoid stupid compiler warnings */
649 /* Start outer loop over neighborlists */
650 for(iidx=0; iidx<nri; iidx++)
652 /* Load shift vector for this list */
653 i_shift_offset = DIM*shiftidx[iidx];
655 /* Load limits for loop over neighbors */
656 j_index_start = jindex[iidx];
657 j_index_end = jindex[iidx+1];
659 /* Get outer coordinate index */
661 i_coord_offset = DIM*inr;
663 /* Load i particle coords and add shift vector */
664 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset+DIM,
665 &ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
667 fix1 = _mm_setzero_pd();
668 fiy1 = _mm_setzero_pd();
669 fiz1 = _mm_setzero_pd();
670 fix2 = _mm_setzero_pd();
671 fiy2 = _mm_setzero_pd();
672 fiz2 = _mm_setzero_pd();
673 fix3 = _mm_setzero_pd();
674 fiy3 = _mm_setzero_pd();
675 fiz3 = _mm_setzero_pd();
677 /* Start inner kernel loop */
678 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
681 /* Get j neighbor index, and coordinate index */
684 j_coord_offsetA = DIM*jnrA;
685 j_coord_offsetB = DIM*jnrB;
687 /* load j atom coordinates */
688 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
691 /* Calculate displacement vector */
692 dx10 = _mm_sub_pd(ix1,jx0);
693 dy10 = _mm_sub_pd(iy1,jy0);
694 dz10 = _mm_sub_pd(iz1,jz0);
695 dx20 = _mm_sub_pd(ix2,jx0);
696 dy20 = _mm_sub_pd(iy2,jy0);
697 dz20 = _mm_sub_pd(iz2,jz0);
698 dx30 = _mm_sub_pd(ix3,jx0);
699 dy30 = _mm_sub_pd(iy3,jy0);
700 dz30 = _mm_sub_pd(iz3,jz0);
702 /* Calculate squared distance and things based on it */
703 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
704 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
705 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
707 rinv10 = sse2_invsqrt_d(rsq10);
708 rinv20 = sse2_invsqrt_d(rsq20);
709 rinv30 = sse2_invsqrt_d(rsq30);
711 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
712 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
713 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
715 /* Load parameters for j particles */
716 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
718 fjx0 = _mm_setzero_pd();
719 fjy0 = _mm_setzero_pd();
720 fjz0 = _mm_setzero_pd();
722 /**************************
723 * CALCULATE INTERACTIONS *
724 **************************/
726 r10 = _mm_mul_pd(rsq10,rinv10);
728 /* Compute parameters for interactions between i and j atoms */
729 qq10 = _mm_mul_pd(iq1,jq0);
731 /* EWALD ELECTROSTATICS */
733 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
734 ewrt = _mm_mul_pd(r10,ewtabscale);
735 ewitab = _mm_cvttpd_epi32(ewrt);
736 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
737 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
739 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
740 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
744 /* Calculate temporary vectorial force */
745 tx = _mm_mul_pd(fscal,dx10);
746 ty = _mm_mul_pd(fscal,dy10);
747 tz = _mm_mul_pd(fscal,dz10);
749 /* Update vectorial force */
750 fix1 = _mm_add_pd(fix1,tx);
751 fiy1 = _mm_add_pd(fiy1,ty);
752 fiz1 = _mm_add_pd(fiz1,tz);
754 fjx0 = _mm_add_pd(fjx0,tx);
755 fjy0 = _mm_add_pd(fjy0,ty);
756 fjz0 = _mm_add_pd(fjz0,tz);
758 /**************************
759 * CALCULATE INTERACTIONS *
760 **************************/
762 r20 = _mm_mul_pd(rsq20,rinv20);
764 /* Compute parameters for interactions between i and j atoms */
765 qq20 = _mm_mul_pd(iq2,jq0);
767 /* EWALD ELECTROSTATICS */
769 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
770 ewrt = _mm_mul_pd(r20,ewtabscale);
771 ewitab = _mm_cvttpd_epi32(ewrt);
772 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
773 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
775 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
776 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
780 /* Calculate temporary vectorial force */
781 tx = _mm_mul_pd(fscal,dx20);
782 ty = _mm_mul_pd(fscal,dy20);
783 tz = _mm_mul_pd(fscal,dz20);
785 /* Update vectorial force */
786 fix2 = _mm_add_pd(fix2,tx);
787 fiy2 = _mm_add_pd(fiy2,ty);
788 fiz2 = _mm_add_pd(fiz2,tz);
790 fjx0 = _mm_add_pd(fjx0,tx);
791 fjy0 = _mm_add_pd(fjy0,ty);
792 fjz0 = _mm_add_pd(fjz0,tz);
794 /**************************
795 * CALCULATE INTERACTIONS *
796 **************************/
798 r30 = _mm_mul_pd(rsq30,rinv30);
800 /* Compute parameters for interactions between i and j atoms */
801 qq30 = _mm_mul_pd(iq3,jq0);
803 /* EWALD ELECTROSTATICS */
805 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
806 ewrt = _mm_mul_pd(r30,ewtabscale);
807 ewitab = _mm_cvttpd_epi32(ewrt);
808 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
809 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
811 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
812 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
816 /* Calculate temporary vectorial force */
817 tx = _mm_mul_pd(fscal,dx30);
818 ty = _mm_mul_pd(fscal,dy30);
819 tz = _mm_mul_pd(fscal,dz30);
821 /* Update vectorial force */
822 fix3 = _mm_add_pd(fix3,tx);
823 fiy3 = _mm_add_pd(fiy3,ty);
824 fiz3 = _mm_add_pd(fiz3,tz);
826 fjx0 = _mm_add_pd(fjx0,tx);
827 fjy0 = _mm_add_pd(fjy0,ty);
828 fjz0 = _mm_add_pd(fjz0,tz);
830 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
832 /* Inner loop uses 111 flops */
839 j_coord_offsetA = DIM*jnrA;
841 /* load j atom coordinates */
842 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
845 /* Calculate displacement vector */
846 dx10 = _mm_sub_pd(ix1,jx0);
847 dy10 = _mm_sub_pd(iy1,jy0);
848 dz10 = _mm_sub_pd(iz1,jz0);
849 dx20 = _mm_sub_pd(ix2,jx0);
850 dy20 = _mm_sub_pd(iy2,jy0);
851 dz20 = _mm_sub_pd(iz2,jz0);
852 dx30 = _mm_sub_pd(ix3,jx0);
853 dy30 = _mm_sub_pd(iy3,jy0);
854 dz30 = _mm_sub_pd(iz3,jz0);
856 /* Calculate squared distance and things based on it */
857 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
858 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
859 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
861 rinv10 = sse2_invsqrt_d(rsq10);
862 rinv20 = sse2_invsqrt_d(rsq20);
863 rinv30 = sse2_invsqrt_d(rsq30);
865 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
866 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
867 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
869 /* Load parameters for j particles */
870 jq0 = _mm_load_sd(charge+jnrA+0);
872 fjx0 = _mm_setzero_pd();
873 fjy0 = _mm_setzero_pd();
874 fjz0 = _mm_setzero_pd();
876 /**************************
877 * CALCULATE INTERACTIONS *
878 **************************/
880 r10 = _mm_mul_pd(rsq10,rinv10);
882 /* Compute parameters for interactions between i and j atoms */
883 qq10 = _mm_mul_pd(iq1,jq0);
885 /* EWALD ELECTROSTATICS */
887 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
888 ewrt = _mm_mul_pd(r10,ewtabscale);
889 ewitab = _mm_cvttpd_epi32(ewrt);
890 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
891 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
892 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
893 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
897 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
899 /* Calculate temporary vectorial force */
900 tx = _mm_mul_pd(fscal,dx10);
901 ty = _mm_mul_pd(fscal,dy10);
902 tz = _mm_mul_pd(fscal,dz10);
904 /* Update vectorial force */
905 fix1 = _mm_add_pd(fix1,tx);
906 fiy1 = _mm_add_pd(fiy1,ty);
907 fiz1 = _mm_add_pd(fiz1,tz);
909 fjx0 = _mm_add_pd(fjx0,tx);
910 fjy0 = _mm_add_pd(fjy0,ty);
911 fjz0 = _mm_add_pd(fjz0,tz);
913 /**************************
914 * CALCULATE INTERACTIONS *
915 **************************/
917 r20 = _mm_mul_pd(rsq20,rinv20);
919 /* Compute parameters for interactions between i and j atoms */
920 qq20 = _mm_mul_pd(iq2,jq0);
922 /* EWALD ELECTROSTATICS */
924 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
925 ewrt = _mm_mul_pd(r20,ewtabscale);
926 ewitab = _mm_cvttpd_epi32(ewrt);
927 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
928 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
929 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
930 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
934 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
936 /* Calculate temporary vectorial force */
937 tx = _mm_mul_pd(fscal,dx20);
938 ty = _mm_mul_pd(fscal,dy20);
939 tz = _mm_mul_pd(fscal,dz20);
941 /* Update vectorial force */
942 fix2 = _mm_add_pd(fix2,tx);
943 fiy2 = _mm_add_pd(fiy2,ty);
944 fiz2 = _mm_add_pd(fiz2,tz);
946 fjx0 = _mm_add_pd(fjx0,tx);
947 fjy0 = _mm_add_pd(fjy0,ty);
948 fjz0 = _mm_add_pd(fjz0,tz);
950 /**************************
951 * CALCULATE INTERACTIONS *
952 **************************/
954 r30 = _mm_mul_pd(rsq30,rinv30);
956 /* Compute parameters for interactions between i and j atoms */
957 qq30 = _mm_mul_pd(iq3,jq0);
959 /* EWALD ELECTROSTATICS */
961 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
962 ewrt = _mm_mul_pd(r30,ewtabscale);
963 ewitab = _mm_cvttpd_epi32(ewrt);
964 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
965 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
966 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
967 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
971 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
973 /* Calculate temporary vectorial force */
974 tx = _mm_mul_pd(fscal,dx30);
975 ty = _mm_mul_pd(fscal,dy30);
976 tz = _mm_mul_pd(fscal,dz30);
978 /* Update vectorial force */
979 fix3 = _mm_add_pd(fix3,tx);
980 fiy3 = _mm_add_pd(fiy3,ty);
981 fiz3 = _mm_add_pd(fiz3,tz);
983 fjx0 = _mm_add_pd(fjx0,tx);
984 fjy0 = _mm_add_pd(fjy0,ty);
985 fjz0 = _mm_add_pd(fjz0,tz);
987 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
989 /* Inner loop uses 111 flops */
992 /* End of innermost loop */
994 gmx_mm_update_iforce_3atom_swizzle_pd(fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
995 f+i_coord_offset+DIM,fshift+i_shift_offset);
997 /* Increment number of inner iterations */
998 inneriter += j_index_end - j_index_start;
1000 /* Outer loop uses 18 flops */
1003 /* Increment number of outer iterations */
1006 /* Update outer/inner flops */
1008 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W4_F,outeriter*18 + inneriter*111);