2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomP1P1_VF_sse2_double
51 * Electrostatics interaction: Ewald
52 * VdW interaction: None
53 * Geometry: Particle-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecEw_VdwNone_GeomP1P1_VF_sse2_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
81 int vdwjidx0A,vdwjidx0B;
82 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
83 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
84 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
87 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
89 __m128d dummy_mask,cutoff_mask;
90 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
91 __m128d one = _mm_set1_pd(1.0);
92 __m128d two = _mm_set1_pd(2.0);
98 jindex = nlist->jindex;
100 shiftidx = nlist->shift;
102 shiftvec = fr->shift_vec[0];
103 fshift = fr->fshift[0];
104 facel = _mm_set1_pd(fr->ic->epsfac);
105 charge = mdatoms->chargeA;
107 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
108 ewtab = fr->ic->tabq_coul_FDV0;
109 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
110 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
112 /* Avoid stupid compiler warnings */
120 /* Start outer loop over neighborlists */
121 for(iidx=0; iidx<nri; iidx++)
123 /* Load shift vector for this list */
124 i_shift_offset = DIM*shiftidx[iidx];
126 /* Load limits for loop over neighbors */
127 j_index_start = jindex[iidx];
128 j_index_end = jindex[iidx+1];
130 /* Get outer coordinate index */
132 i_coord_offset = DIM*inr;
134 /* Load i particle coords and add shift vector */
135 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
137 fix0 = _mm_setzero_pd();
138 fiy0 = _mm_setzero_pd();
139 fiz0 = _mm_setzero_pd();
141 /* Load parameters for i particles */
142 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
144 /* Reset potential sums */
145 velecsum = _mm_setzero_pd();
147 /* Start inner kernel loop */
148 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
151 /* Get j neighbor index, and coordinate index */
154 j_coord_offsetA = DIM*jnrA;
155 j_coord_offsetB = DIM*jnrB;
157 /* load j atom coordinates */
158 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
161 /* Calculate displacement vector */
162 dx00 = _mm_sub_pd(ix0,jx0);
163 dy00 = _mm_sub_pd(iy0,jy0);
164 dz00 = _mm_sub_pd(iz0,jz0);
166 /* Calculate squared distance and things based on it */
167 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
169 rinv00 = sse2_invsqrt_d(rsq00);
171 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
173 /* Load parameters for j particles */
174 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
176 /**************************
177 * CALCULATE INTERACTIONS *
178 **************************/
180 r00 = _mm_mul_pd(rsq00,rinv00);
182 /* Compute parameters for interactions between i and j atoms */
183 qq00 = _mm_mul_pd(iq0,jq0);
185 /* EWALD ELECTROSTATICS */
187 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
188 ewrt = _mm_mul_pd(r00,ewtabscale);
189 ewitab = _mm_cvttpd_epi32(ewrt);
190 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
191 ewitab = _mm_slli_epi32(ewitab,2);
192 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
193 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
194 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
195 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
196 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
197 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
198 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
199 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
200 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
201 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
203 /* Update potential sum for this i atom from the interaction with this j atom. */
204 velecsum = _mm_add_pd(velecsum,velec);
208 /* Calculate temporary vectorial force */
209 tx = _mm_mul_pd(fscal,dx00);
210 ty = _mm_mul_pd(fscal,dy00);
211 tz = _mm_mul_pd(fscal,dz00);
213 /* Update vectorial force */
214 fix0 = _mm_add_pd(fix0,tx);
215 fiy0 = _mm_add_pd(fiy0,ty);
216 fiz0 = _mm_add_pd(fiz0,tz);
218 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,tx,ty,tz);
220 /* Inner loop uses 41 flops */
227 j_coord_offsetA = DIM*jnrA;
229 /* load j atom coordinates */
230 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
233 /* Calculate displacement vector */
234 dx00 = _mm_sub_pd(ix0,jx0);
235 dy00 = _mm_sub_pd(iy0,jy0);
236 dz00 = _mm_sub_pd(iz0,jz0);
238 /* Calculate squared distance and things based on it */
239 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
241 rinv00 = sse2_invsqrt_d(rsq00);
243 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
245 /* Load parameters for j particles */
246 jq0 = _mm_load_sd(charge+jnrA+0);
248 /**************************
249 * CALCULATE INTERACTIONS *
250 **************************/
252 r00 = _mm_mul_pd(rsq00,rinv00);
254 /* Compute parameters for interactions between i and j atoms */
255 qq00 = _mm_mul_pd(iq0,jq0);
257 /* EWALD ELECTROSTATICS */
259 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
260 ewrt = _mm_mul_pd(r00,ewtabscale);
261 ewitab = _mm_cvttpd_epi32(ewrt);
262 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
263 ewitab = _mm_slli_epi32(ewitab,2);
264 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
265 ewtabD = _mm_setzero_pd();
266 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
267 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
268 ewtabFn = _mm_setzero_pd();
269 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
270 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
271 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
272 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
273 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
275 /* Update potential sum for this i atom from the interaction with this j atom. */
276 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
277 velecsum = _mm_add_pd(velecsum,velec);
281 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
283 /* Calculate temporary vectorial force */
284 tx = _mm_mul_pd(fscal,dx00);
285 ty = _mm_mul_pd(fscal,dy00);
286 tz = _mm_mul_pd(fscal,dz00);
288 /* Update vectorial force */
289 fix0 = _mm_add_pd(fix0,tx);
290 fiy0 = _mm_add_pd(fiy0,ty);
291 fiz0 = _mm_add_pd(fiz0,tz);
293 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,tx,ty,tz);
295 /* Inner loop uses 41 flops */
298 /* End of innermost loop */
300 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
301 f+i_coord_offset,fshift+i_shift_offset);
304 /* Update potential energies */
305 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
307 /* Increment number of inner iterations */
308 inneriter += j_index_end - j_index_start;
310 /* Outer loop uses 8 flops */
313 /* Increment number of outer iterations */
316 /* Update outer/inner flops */
318 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*41);
321 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomP1P1_F_sse2_double
322 * Electrostatics interaction: Ewald
323 * VdW interaction: None
324 * Geometry: Particle-Particle
325 * Calculate force/pot: Force
328 nb_kernel_ElecEw_VdwNone_GeomP1P1_F_sse2_double
329 (t_nblist * gmx_restrict nlist,
330 rvec * gmx_restrict xx,
331 rvec * gmx_restrict ff,
332 struct t_forcerec * gmx_restrict fr,
333 t_mdatoms * gmx_restrict mdatoms,
334 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
335 t_nrnb * gmx_restrict nrnb)
337 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
338 * just 0 for non-waters.
339 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
340 * jnr indices corresponding to data put in the four positions in the SIMD register.
342 int i_shift_offset,i_coord_offset,outeriter,inneriter;
343 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
345 int j_coord_offsetA,j_coord_offsetB;
346 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
348 real *shiftvec,*fshift,*x,*f;
349 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
351 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
352 int vdwjidx0A,vdwjidx0B;
353 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
354 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
355 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
358 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
360 __m128d dummy_mask,cutoff_mask;
361 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
362 __m128d one = _mm_set1_pd(1.0);
363 __m128d two = _mm_set1_pd(2.0);
369 jindex = nlist->jindex;
371 shiftidx = nlist->shift;
373 shiftvec = fr->shift_vec[0];
374 fshift = fr->fshift[0];
375 facel = _mm_set1_pd(fr->ic->epsfac);
376 charge = mdatoms->chargeA;
378 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
379 ewtab = fr->ic->tabq_coul_F;
380 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
381 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
383 /* Avoid stupid compiler warnings */
391 /* Start outer loop over neighborlists */
392 for(iidx=0; iidx<nri; iidx++)
394 /* Load shift vector for this list */
395 i_shift_offset = DIM*shiftidx[iidx];
397 /* Load limits for loop over neighbors */
398 j_index_start = jindex[iidx];
399 j_index_end = jindex[iidx+1];
401 /* Get outer coordinate index */
403 i_coord_offset = DIM*inr;
405 /* Load i particle coords and add shift vector */
406 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
408 fix0 = _mm_setzero_pd();
409 fiy0 = _mm_setzero_pd();
410 fiz0 = _mm_setzero_pd();
412 /* Load parameters for i particles */
413 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
415 /* Start inner kernel loop */
416 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
419 /* Get j neighbor index, and coordinate index */
422 j_coord_offsetA = DIM*jnrA;
423 j_coord_offsetB = DIM*jnrB;
425 /* load j atom coordinates */
426 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
429 /* Calculate displacement vector */
430 dx00 = _mm_sub_pd(ix0,jx0);
431 dy00 = _mm_sub_pd(iy0,jy0);
432 dz00 = _mm_sub_pd(iz0,jz0);
434 /* Calculate squared distance and things based on it */
435 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
437 rinv00 = sse2_invsqrt_d(rsq00);
439 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
441 /* Load parameters for j particles */
442 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
444 /**************************
445 * CALCULATE INTERACTIONS *
446 **************************/
448 r00 = _mm_mul_pd(rsq00,rinv00);
450 /* Compute parameters for interactions between i and j atoms */
451 qq00 = _mm_mul_pd(iq0,jq0);
453 /* EWALD ELECTROSTATICS */
455 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
456 ewrt = _mm_mul_pd(r00,ewtabscale);
457 ewitab = _mm_cvttpd_epi32(ewrt);
458 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
459 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
461 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
462 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
466 /* Calculate temporary vectorial force */
467 tx = _mm_mul_pd(fscal,dx00);
468 ty = _mm_mul_pd(fscal,dy00);
469 tz = _mm_mul_pd(fscal,dz00);
471 /* Update vectorial force */
472 fix0 = _mm_add_pd(fix0,tx);
473 fiy0 = _mm_add_pd(fiy0,ty);
474 fiz0 = _mm_add_pd(fiz0,tz);
476 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,tx,ty,tz);
478 /* Inner loop uses 36 flops */
485 j_coord_offsetA = DIM*jnrA;
487 /* load j atom coordinates */
488 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
491 /* Calculate displacement vector */
492 dx00 = _mm_sub_pd(ix0,jx0);
493 dy00 = _mm_sub_pd(iy0,jy0);
494 dz00 = _mm_sub_pd(iz0,jz0);
496 /* Calculate squared distance and things based on it */
497 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
499 rinv00 = sse2_invsqrt_d(rsq00);
501 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
503 /* Load parameters for j particles */
504 jq0 = _mm_load_sd(charge+jnrA+0);
506 /**************************
507 * CALCULATE INTERACTIONS *
508 **************************/
510 r00 = _mm_mul_pd(rsq00,rinv00);
512 /* Compute parameters for interactions between i and j atoms */
513 qq00 = _mm_mul_pd(iq0,jq0);
515 /* EWALD ELECTROSTATICS */
517 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
518 ewrt = _mm_mul_pd(r00,ewtabscale);
519 ewitab = _mm_cvttpd_epi32(ewrt);
520 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
521 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
522 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
523 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
527 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
529 /* Calculate temporary vectorial force */
530 tx = _mm_mul_pd(fscal,dx00);
531 ty = _mm_mul_pd(fscal,dy00);
532 tz = _mm_mul_pd(fscal,dz00);
534 /* Update vectorial force */
535 fix0 = _mm_add_pd(fix0,tx);
536 fiy0 = _mm_add_pd(fiy0,ty);
537 fiz0 = _mm_add_pd(fiz0,tz);
539 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,tx,ty,tz);
541 /* Inner loop uses 36 flops */
544 /* End of innermost loop */
546 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
547 f+i_coord_offset,fshift+i_shift_offset);
549 /* Increment number of inner iterations */
550 inneriter += j_index_end - j_index_start;
552 /* Outer loop uses 7 flops */
555 /* Increment number of outer iterations */
558 /* Update outer/inner flops */
560 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*36);