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36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse2_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_double
51 * Electrostatics interaction: Ewald
52 * VdW interaction: LJEwald
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
82 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
84 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
85 int vdwjidx0A,vdwjidx0B;
86 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
87 int vdwjidx1A,vdwjidx1B;
88 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
89 int vdwjidx2A,vdwjidx2B;
90 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
91 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
92 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
93 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
94 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
95 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
96 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
97 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
98 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
99 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
100 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
103 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
106 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
107 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
117 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
119 __m128d one_half = _mm_set1_pd(0.5);
120 __m128d minus_one = _mm_set1_pd(-1.0);
122 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
124 __m128d dummy_mask,cutoff_mask;
125 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
126 __m128d one = _mm_set1_pd(1.0);
127 __m128d two = _mm_set1_pd(2.0);
133 jindex = nlist->jindex;
135 shiftidx = nlist->shift;
137 shiftvec = fr->shift_vec[0];
138 fshift = fr->fshift[0];
139 facel = _mm_set1_pd(fr->ic->epsfac);
140 charge = mdatoms->chargeA;
141 nvdwtype = fr->ntype;
143 vdwtype = mdatoms->typeA;
144 vdwgridparam = fr->ljpme_c6grid;
145 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
146 ewclj = _mm_set1_pd(fr->ic->ewaldcoeff_lj);
147 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
149 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
150 ewtab = fr->ic->tabq_coul_FDV0;
151 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
152 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
154 /* Setup water-specific parameters */
155 inr = nlist->iinr[0];
156 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
157 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
158 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
159 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
161 jq0 = _mm_set1_pd(charge[inr+0]);
162 jq1 = _mm_set1_pd(charge[inr+1]);
163 jq2 = _mm_set1_pd(charge[inr+2]);
164 vdwjidx0A = 2*vdwtype[inr+0];
165 qq00 = _mm_mul_pd(iq0,jq0);
166 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
167 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
168 c6grid_00 = _mm_set1_pd(vdwgridparam[vdwioffset0+vdwjidx0A]);
169 qq01 = _mm_mul_pd(iq0,jq1);
170 qq02 = _mm_mul_pd(iq0,jq2);
171 qq10 = _mm_mul_pd(iq1,jq0);
172 qq11 = _mm_mul_pd(iq1,jq1);
173 qq12 = _mm_mul_pd(iq1,jq2);
174 qq20 = _mm_mul_pd(iq2,jq0);
175 qq21 = _mm_mul_pd(iq2,jq1);
176 qq22 = _mm_mul_pd(iq2,jq2);
178 /* Avoid stupid compiler warnings */
186 /* Start outer loop over neighborlists */
187 for(iidx=0; iidx<nri; iidx++)
189 /* Load shift vector for this list */
190 i_shift_offset = DIM*shiftidx[iidx];
192 /* Load limits for loop over neighbors */
193 j_index_start = jindex[iidx];
194 j_index_end = jindex[iidx+1];
196 /* Get outer coordinate index */
198 i_coord_offset = DIM*inr;
200 /* Load i particle coords and add shift vector */
201 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
202 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
204 fix0 = _mm_setzero_pd();
205 fiy0 = _mm_setzero_pd();
206 fiz0 = _mm_setzero_pd();
207 fix1 = _mm_setzero_pd();
208 fiy1 = _mm_setzero_pd();
209 fiz1 = _mm_setzero_pd();
210 fix2 = _mm_setzero_pd();
211 fiy2 = _mm_setzero_pd();
212 fiz2 = _mm_setzero_pd();
214 /* Reset potential sums */
215 velecsum = _mm_setzero_pd();
216 vvdwsum = _mm_setzero_pd();
218 /* Start inner kernel loop */
219 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
222 /* Get j neighbor index, and coordinate index */
225 j_coord_offsetA = DIM*jnrA;
226 j_coord_offsetB = DIM*jnrB;
228 /* load j atom coordinates */
229 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
230 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
232 /* Calculate displacement vector */
233 dx00 = _mm_sub_pd(ix0,jx0);
234 dy00 = _mm_sub_pd(iy0,jy0);
235 dz00 = _mm_sub_pd(iz0,jz0);
236 dx01 = _mm_sub_pd(ix0,jx1);
237 dy01 = _mm_sub_pd(iy0,jy1);
238 dz01 = _mm_sub_pd(iz0,jz1);
239 dx02 = _mm_sub_pd(ix0,jx2);
240 dy02 = _mm_sub_pd(iy0,jy2);
241 dz02 = _mm_sub_pd(iz0,jz2);
242 dx10 = _mm_sub_pd(ix1,jx0);
243 dy10 = _mm_sub_pd(iy1,jy0);
244 dz10 = _mm_sub_pd(iz1,jz0);
245 dx11 = _mm_sub_pd(ix1,jx1);
246 dy11 = _mm_sub_pd(iy1,jy1);
247 dz11 = _mm_sub_pd(iz1,jz1);
248 dx12 = _mm_sub_pd(ix1,jx2);
249 dy12 = _mm_sub_pd(iy1,jy2);
250 dz12 = _mm_sub_pd(iz1,jz2);
251 dx20 = _mm_sub_pd(ix2,jx0);
252 dy20 = _mm_sub_pd(iy2,jy0);
253 dz20 = _mm_sub_pd(iz2,jz0);
254 dx21 = _mm_sub_pd(ix2,jx1);
255 dy21 = _mm_sub_pd(iy2,jy1);
256 dz21 = _mm_sub_pd(iz2,jz1);
257 dx22 = _mm_sub_pd(ix2,jx2);
258 dy22 = _mm_sub_pd(iy2,jy2);
259 dz22 = _mm_sub_pd(iz2,jz2);
261 /* Calculate squared distance and things based on it */
262 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
263 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
264 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
265 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
266 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
267 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
268 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
269 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
270 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
272 rinv00 = sse2_invsqrt_d(rsq00);
273 rinv01 = sse2_invsqrt_d(rsq01);
274 rinv02 = sse2_invsqrt_d(rsq02);
275 rinv10 = sse2_invsqrt_d(rsq10);
276 rinv11 = sse2_invsqrt_d(rsq11);
277 rinv12 = sse2_invsqrt_d(rsq12);
278 rinv20 = sse2_invsqrt_d(rsq20);
279 rinv21 = sse2_invsqrt_d(rsq21);
280 rinv22 = sse2_invsqrt_d(rsq22);
282 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
283 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
284 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
285 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
286 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
287 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
288 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
289 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
290 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
292 fjx0 = _mm_setzero_pd();
293 fjy0 = _mm_setzero_pd();
294 fjz0 = _mm_setzero_pd();
295 fjx1 = _mm_setzero_pd();
296 fjy1 = _mm_setzero_pd();
297 fjz1 = _mm_setzero_pd();
298 fjx2 = _mm_setzero_pd();
299 fjy2 = _mm_setzero_pd();
300 fjz2 = _mm_setzero_pd();
302 /**************************
303 * CALCULATE INTERACTIONS *
304 **************************/
306 r00 = _mm_mul_pd(rsq00,rinv00);
308 /* EWALD ELECTROSTATICS */
310 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
311 ewrt = _mm_mul_pd(r00,ewtabscale);
312 ewitab = _mm_cvttpd_epi32(ewrt);
313 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
314 ewitab = _mm_slli_epi32(ewitab,2);
315 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
316 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
317 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
318 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
319 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
320 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
321 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
322 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
323 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
324 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
326 /* Analytical LJ-PME */
327 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
328 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
329 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
330 exponent = sse2_exp_d(ewcljrsq);
331 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
332 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
333 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
334 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
335 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
336 vvdw = _mm_sub_pd(_mm_mul_pd(vvdw12,one_twelfth),_mm_mul_pd(vvdw6,one_sixth));
337 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
338 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
340 /* Update potential sum for this i atom from the interaction with this j atom. */
341 velecsum = _mm_add_pd(velecsum,velec);
342 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
344 fscal = _mm_add_pd(felec,fvdw);
346 /* Calculate temporary vectorial force */
347 tx = _mm_mul_pd(fscal,dx00);
348 ty = _mm_mul_pd(fscal,dy00);
349 tz = _mm_mul_pd(fscal,dz00);
351 /* Update vectorial force */
352 fix0 = _mm_add_pd(fix0,tx);
353 fiy0 = _mm_add_pd(fiy0,ty);
354 fiz0 = _mm_add_pd(fiz0,tz);
356 fjx0 = _mm_add_pd(fjx0,tx);
357 fjy0 = _mm_add_pd(fjy0,ty);
358 fjz0 = _mm_add_pd(fjz0,tz);
360 /**************************
361 * CALCULATE INTERACTIONS *
362 **************************/
364 r01 = _mm_mul_pd(rsq01,rinv01);
366 /* EWALD ELECTROSTATICS */
368 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
369 ewrt = _mm_mul_pd(r01,ewtabscale);
370 ewitab = _mm_cvttpd_epi32(ewrt);
371 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
372 ewitab = _mm_slli_epi32(ewitab,2);
373 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
374 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
375 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
376 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
377 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
378 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
379 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
380 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
381 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
382 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
384 /* Update potential sum for this i atom from the interaction with this j atom. */
385 velecsum = _mm_add_pd(velecsum,velec);
389 /* Calculate temporary vectorial force */
390 tx = _mm_mul_pd(fscal,dx01);
391 ty = _mm_mul_pd(fscal,dy01);
392 tz = _mm_mul_pd(fscal,dz01);
394 /* Update vectorial force */
395 fix0 = _mm_add_pd(fix0,tx);
396 fiy0 = _mm_add_pd(fiy0,ty);
397 fiz0 = _mm_add_pd(fiz0,tz);
399 fjx1 = _mm_add_pd(fjx1,tx);
400 fjy1 = _mm_add_pd(fjy1,ty);
401 fjz1 = _mm_add_pd(fjz1,tz);
403 /**************************
404 * CALCULATE INTERACTIONS *
405 **************************/
407 r02 = _mm_mul_pd(rsq02,rinv02);
409 /* EWALD ELECTROSTATICS */
411 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
412 ewrt = _mm_mul_pd(r02,ewtabscale);
413 ewitab = _mm_cvttpd_epi32(ewrt);
414 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
415 ewitab = _mm_slli_epi32(ewitab,2);
416 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
417 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
418 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
419 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
420 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
421 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
422 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
423 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
424 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
425 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
427 /* Update potential sum for this i atom from the interaction with this j atom. */
428 velecsum = _mm_add_pd(velecsum,velec);
432 /* Calculate temporary vectorial force */
433 tx = _mm_mul_pd(fscal,dx02);
434 ty = _mm_mul_pd(fscal,dy02);
435 tz = _mm_mul_pd(fscal,dz02);
437 /* Update vectorial force */
438 fix0 = _mm_add_pd(fix0,tx);
439 fiy0 = _mm_add_pd(fiy0,ty);
440 fiz0 = _mm_add_pd(fiz0,tz);
442 fjx2 = _mm_add_pd(fjx2,tx);
443 fjy2 = _mm_add_pd(fjy2,ty);
444 fjz2 = _mm_add_pd(fjz2,tz);
446 /**************************
447 * CALCULATE INTERACTIONS *
448 **************************/
450 r10 = _mm_mul_pd(rsq10,rinv10);
452 /* EWALD ELECTROSTATICS */
454 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
455 ewrt = _mm_mul_pd(r10,ewtabscale);
456 ewitab = _mm_cvttpd_epi32(ewrt);
457 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
458 ewitab = _mm_slli_epi32(ewitab,2);
459 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
460 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
461 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
462 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
463 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
464 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
465 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
466 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
467 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
468 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
470 /* Update potential sum for this i atom from the interaction with this j atom. */
471 velecsum = _mm_add_pd(velecsum,velec);
475 /* Calculate temporary vectorial force */
476 tx = _mm_mul_pd(fscal,dx10);
477 ty = _mm_mul_pd(fscal,dy10);
478 tz = _mm_mul_pd(fscal,dz10);
480 /* Update vectorial force */
481 fix1 = _mm_add_pd(fix1,tx);
482 fiy1 = _mm_add_pd(fiy1,ty);
483 fiz1 = _mm_add_pd(fiz1,tz);
485 fjx0 = _mm_add_pd(fjx0,tx);
486 fjy0 = _mm_add_pd(fjy0,ty);
487 fjz0 = _mm_add_pd(fjz0,tz);
489 /**************************
490 * CALCULATE INTERACTIONS *
491 **************************/
493 r11 = _mm_mul_pd(rsq11,rinv11);
495 /* EWALD ELECTROSTATICS */
497 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
498 ewrt = _mm_mul_pd(r11,ewtabscale);
499 ewitab = _mm_cvttpd_epi32(ewrt);
500 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
501 ewitab = _mm_slli_epi32(ewitab,2);
502 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
503 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
504 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
505 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
506 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
507 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
508 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
509 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
510 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
511 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
513 /* Update potential sum for this i atom from the interaction with this j atom. */
514 velecsum = _mm_add_pd(velecsum,velec);
518 /* Calculate temporary vectorial force */
519 tx = _mm_mul_pd(fscal,dx11);
520 ty = _mm_mul_pd(fscal,dy11);
521 tz = _mm_mul_pd(fscal,dz11);
523 /* Update vectorial force */
524 fix1 = _mm_add_pd(fix1,tx);
525 fiy1 = _mm_add_pd(fiy1,ty);
526 fiz1 = _mm_add_pd(fiz1,tz);
528 fjx1 = _mm_add_pd(fjx1,tx);
529 fjy1 = _mm_add_pd(fjy1,ty);
530 fjz1 = _mm_add_pd(fjz1,tz);
532 /**************************
533 * CALCULATE INTERACTIONS *
534 **************************/
536 r12 = _mm_mul_pd(rsq12,rinv12);
538 /* EWALD ELECTROSTATICS */
540 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
541 ewrt = _mm_mul_pd(r12,ewtabscale);
542 ewitab = _mm_cvttpd_epi32(ewrt);
543 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
544 ewitab = _mm_slli_epi32(ewitab,2);
545 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
546 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
547 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
548 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
549 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
550 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
551 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
552 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
553 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
554 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
556 /* Update potential sum for this i atom from the interaction with this j atom. */
557 velecsum = _mm_add_pd(velecsum,velec);
561 /* Calculate temporary vectorial force */
562 tx = _mm_mul_pd(fscal,dx12);
563 ty = _mm_mul_pd(fscal,dy12);
564 tz = _mm_mul_pd(fscal,dz12);
566 /* Update vectorial force */
567 fix1 = _mm_add_pd(fix1,tx);
568 fiy1 = _mm_add_pd(fiy1,ty);
569 fiz1 = _mm_add_pd(fiz1,tz);
571 fjx2 = _mm_add_pd(fjx2,tx);
572 fjy2 = _mm_add_pd(fjy2,ty);
573 fjz2 = _mm_add_pd(fjz2,tz);
575 /**************************
576 * CALCULATE INTERACTIONS *
577 **************************/
579 r20 = _mm_mul_pd(rsq20,rinv20);
581 /* EWALD ELECTROSTATICS */
583 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
584 ewrt = _mm_mul_pd(r20,ewtabscale);
585 ewitab = _mm_cvttpd_epi32(ewrt);
586 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
587 ewitab = _mm_slli_epi32(ewitab,2);
588 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
589 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
590 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
591 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
592 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
593 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
594 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
595 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
596 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
597 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
599 /* Update potential sum for this i atom from the interaction with this j atom. */
600 velecsum = _mm_add_pd(velecsum,velec);
604 /* Calculate temporary vectorial force */
605 tx = _mm_mul_pd(fscal,dx20);
606 ty = _mm_mul_pd(fscal,dy20);
607 tz = _mm_mul_pd(fscal,dz20);
609 /* Update vectorial force */
610 fix2 = _mm_add_pd(fix2,tx);
611 fiy2 = _mm_add_pd(fiy2,ty);
612 fiz2 = _mm_add_pd(fiz2,tz);
614 fjx0 = _mm_add_pd(fjx0,tx);
615 fjy0 = _mm_add_pd(fjy0,ty);
616 fjz0 = _mm_add_pd(fjz0,tz);
618 /**************************
619 * CALCULATE INTERACTIONS *
620 **************************/
622 r21 = _mm_mul_pd(rsq21,rinv21);
624 /* EWALD ELECTROSTATICS */
626 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
627 ewrt = _mm_mul_pd(r21,ewtabscale);
628 ewitab = _mm_cvttpd_epi32(ewrt);
629 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
630 ewitab = _mm_slli_epi32(ewitab,2);
631 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
632 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
633 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
634 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
635 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
636 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
637 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
638 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
639 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
640 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
642 /* Update potential sum for this i atom from the interaction with this j atom. */
643 velecsum = _mm_add_pd(velecsum,velec);
647 /* Calculate temporary vectorial force */
648 tx = _mm_mul_pd(fscal,dx21);
649 ty = _mm_mul_pd(fscal,dy21);
650 tz = _mm_mul_pd(fscal,dz21);
652 /* Update vectorial force */
653 fix2 = _mm_add_pd(fix2,tx);
654 fiy2 = _mm_add_pd(fiy2,ty);
655 fiz2 = _mm_add_pd(fiz2,tz);
657 fjx1 = _mm_add_pd(fjx1,tx);
658 fjy1 = _mm_add_pd(fjy1,ty);
659 fjz1 = _mm_add_pd(fjz1,tz);
661 /**************************
662 * CALCULATE INTERACTIONS *
663 **************************/
665 r22 = _mm_mul_pd(rsq22,rinv22);
667 /* EWALD ELECTROSTATICS */
669 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
670 ewrt = _mm_mul_pd(r22,ewtabscale);
671 ewitab = _mm_cvttpd_epi32(ewrt);
672 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
673 ewitab = _mm_slli_epi32(ewitab,2);
674 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
675 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
676 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
677 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
678 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
679 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
680 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
681 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
682 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
683 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
685 /* Update potential sum for this i atom from the interaction with this j atom. */
686 velecsum = _mm_add_pd(velecsum,velec);
690 /* Calculate temporary vectorial force */
691 tx = _mm_mul_pd(fscal,dx22);
692 ty = _mm_mul_pd(fscal,dy22);
693 tz = _mm_mul_pd(fscal,dz22);
695 /* Update vectorial force */
696 fix2 = _mm_add_pd(fix2,tx);
697 fiy2 = _mm_add_pd(fiy2,ty);
698 fiz2 = _mm_add_pd(fiz2,tz);
700 fjx2 = _mm_add_pd(fjx2,tx);
701 fjy2 = _mm_add_pd(fjy2,ty);
702 fjz2 = _mm_add_pd(fjz2,tz);
704 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
706 /* Inner loop uses 397 flops */
713 j_coord_offsetA = DIM*jnrA;
715 /* load j atom coordinates */
716 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
717 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
719 /* Calculate displacement vector */
720 dx00 = _mm_sub_pd(ix0,jx0);
721 dy00 = _mm_sub_pd(iy0,jy0);
722 dz00 = _mm_sub_pd(iz0,jz0);
723 dx01 = _mm_sub_pd(ix0,jx1);
724 dy01 = _mm_sub_pd(iy0,jy1);
725 dz01 = _mm_sub_pd(iz0,jz1);
726 dx02 = _mm_sub_pd(ix0,jx2);
727 dy02 = _mm_sub_pd(iy0,jy2);
728 dz02 = _mm_sub_pd(iz0,jz2);
729 dx10 = _mm_sub_pd(ix1,jx0);
730 dy10 = _mm_sub_pd(iy1,jy0);
731 dz10 = _mm_sub_pd(iz1,jz0);
732 dx11 = _mm_sub_pd(ix1,jx1);
733 dy11 = _mm_sub_pd(iy1,jy1);
734 dz11 = _mm_sub_pd(iz1,jz1);
735 dx12 = _mm_sub_pd(ix1,jx2);
736 dy12 = _mm_sub_pd(iy1,jy2);
737 dz12 = _mm_sub_pd(iz1,jz2);
738 dx20 = _mm_sub_pd(ix2,jx0);
739 dy20 = _mm_sub_pd(iy2,jy0);
740 dz20 = _mm_sub_pd(iz2,jz0);
741 dx21 = _mm_sub_pd(ix2,jx1);
742 dy21 = _mm_sub_pd(iy2,jy1);
743 dz21 = _mm_sub_pd(iz2,jz1);
744 dx22 = _mm_sub_pd(ix2,jx2);
745 dy22 = _mm_sub_pd(iy2,jy2);
746 dz22 = _mm_sub_pd(iz2,jz2);
748 /* Calculate squared distance and things based on it */
749 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
750 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
751 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
752 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
753 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
754 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
755 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
756 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
757 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
759 rinv00 = sse2_invsqrt_d(rsq00);
760 rinv01 = sse2_invsqrt_d(rsq01);
761 rinv02 = sse2_invsqrt_d(rsq02);
762 rinv10 = sse2_invsqrt_d(rsq10);
763 rinv11 = sse2_invsqrt_d(rsq11);
764 rinv12 = sse2_invsqrt_d(rsq12);
765 rinv20 = sse2_invsqrt_d(rsq20);
766 rinv21 = sse2_invsqrt_d(rsq21);
767 rinv22 = sse2_invsqrt_d(rsq22);
769 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
770 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
771 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
772 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
773 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
774 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
775 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
776 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
777 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
779 fjx0 = _mm_setzero_pd();
780 fjy0 = _mm_setzero_pd();
781 fjz0 = _mm_setzero_pd();
782 fjx1 = _mm_setzero_pd();
783 fjy1 = _mm_setzero_pd();
784 fjz1 = _mm_setzero_pd();
785 fjx2 = _mm_setzero_pd();
786 fjy2 = _mm_setzero_pd();
787 fjz2 = _mm_setzero_pd();
789 /**************************
790 * CALCULATE INTERACTIONS *
791 **************************/
793 r00 = _mm_mul_pd(rsq00,rinv00);
795 /* EWALD ELECTROSTATICS */
797 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
798 ewrt = _mm_mul_pd(r00,ewtabscale);
799 ewitab = _mm_cvttpd_epi32(ewrt);
800 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
801 ewitab = _mm_slli_epi32(ewitab,2);
802 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
803 ewtabD = _mm_setzero_pd();
804 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
805 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
806 ewtabFn = _mm_setzero_pd();
807 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
808 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
809 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
810 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
811 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
813 /* Analytical LJ-PME */
814 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
815 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
816 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
817 exponent = sse2_exp_d(ewcljrsq);
818 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
819 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
820 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
821 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
822 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
823 vvdw = _mm_sub_pd(_mm_mul_pd(vvdw12,one_twelfth),_mm_mul_pd(vvdw6,one_sixth));
824 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
825 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
827 /* Update potential sum for this i atom from the interaction with this j atom. */
828 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
829 velecsum = _mm_add_pd(velecsum,velec);
830 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
831 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
833 fscal = _mm_add_pd(felec,fvdw);
835 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
837 /* Calculate temporary vectorial force */
838 tx = _mm_mul_pd(fscal,dx00);
839 ty = _mm_mul_pd(fscal,dy00);
840 tz = _mm_mul_pd(fscal,dz00);
842 /* Update vectorial force */
843 fix0 = _mm_add_pd(fix0,tx);
844 fiy0 = _mm_add_pd(fiy0,ty);
845 fiz0 = _mm_add_pd(fiz0,tz);
847 fjx0 = _mm_add_pd(fjx0,tx);
848 fjy0 = _mm_add_pd(fjy0,ty);
849 fjz0 = _mm_add_pd(fjz0,tz);
851 /**************************
852 * CALCULATE INTERACTIONS *
853 **************************/
855 r01 = _mm_mul_pd(rsq01,rinv01);
857 /* EWALD ELECTROSTATICS */
859 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
860 ewrt = _mm_mul_pd(r01,ewtabscale);
861 ewitab = _mm_cvttpd_epi32(ewrt);
862 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
863 ewitab = _mm_slli_epi32(ewitab,2);
864 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
865 ewtabD = _mm_setzero_pd();
866 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
867 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
868 ewtabFn = _mm_setzero_pd();
869 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
870 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
871 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
872 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
873 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
875 /* Update potential sum for this i atom from the interaction with this j atom. */
876 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
877 velecsum = _mm_add_pd(velecsum,velec);
881 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
883 /* Calculate temporary vectorial force */
884 tx = _mm_mul_pd(fscal,dx01);
885 ty = _mm_mul_pd(fscal,dy01);
886 tz = _mm_mul_pd(fscal,dz01);
888 /* Update vectorial force */
889 fix0 = _mm_add_pd(fix0,tx);
890 fiy0 = _mm_add_pd(fiy0,ty);
891 fiz0 = _mm_add_pd(fiz0,tz);
893 fjx1 = _mm_add_pd(fjx1,tx);
894 fjy1 = _mm_add_pd(fjy1,ty);
895 fjz1 = _mm_add_pd(fjz1,tz);
897 /**************************
898 * CALCULATE INTERACTIONS *
899 **************************/
901 r02 = _mm_mul_pd(rsq02,rinv02);
903 /* EWALD ELECTROSTATICS */
905 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
906 ewrt = _mm_mul_pd(r02,ewtabscale);
907 ewitab = _mm_cvttpd_epi32(ewrt);
908 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
909 ewitab = _mm_slli_epi32(ewitab,2);
910 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
911 ewtabD = _mm_setzero_pd();
912 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
913 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
914 ewtabFn = _mm_setzero_pd();
915 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
916 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
917 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
918 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
919 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
921 /* Update potential sum for this i atom from the interaction with this j atom. */
922 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
923 velecsum = _mm_add_pd(velecsum,velec);
927 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
929 /* Calculate temporary vectorial force */
930 tx = _mm_mul_pd(fscal,dx02);
931 ty = _mm_mul_pd(fscal,dy02);
932 tz = _mm_mul_pd(fscal,dz02);
934 /* Update vectorial force */
935 fix0 = _mm_add_pd(fix0,tx);
936 fiy0 = _mm_add_pd(fiy0,ty);
937 fiz0 = _mm_add_pd(fiz0,tz);
939 fjx2 = _mm_add_pd(fjx2,tx);
940 fjy2 = _mm_add_pd(fjy2,ty);
941 fjz2 = _mm_add_pd(fjz2,tz);
943 /**************************
944 * CALCULATE INTERACTIONS *
945 **************************/
947 r10 = _mm_mul_pd(rsq10,rinv10);
949 /* EWALD ELECTROSTATICS */
951 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
952 ewrt = _mm_mul_pd(r10,ewtabscale);
953 ewitab = _mm_cvttpd_epi32(ewrt);
954 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
955 ewitab = _mm_slli_epi32(ewitab,2);
956 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
957 ewtabD = _mm_setzero_pd();
958 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
959 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
960 ewtabFn = _mm_setzero_pd();
961 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
962 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
963 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
964 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
965 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
967 /* Update potential sum for this i atom from the interaction with this j atom. */
968 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
969 velecsum = _mm_add_pd(velecsum,velec);
973 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
975 /* Calculate temporary vectorial force */
976 tx = _mm_mul_pd(fscal,dx10);
977 ty = _mm_mul_pd(fscal,dy10);
978 tz = _mm_mul_pd(fscal,dz10);
980 /* Update vectorial force */
981 fix1 = _mm_add_pd(fix1,tx);
982 fiy1 = _mm_add_pd(fiy1,ty);
983 fiz1 = _mm_add_pd(fiz1,tz);
985 fjx0 = _mm_add_pd(fjx0,tx);
986 fjy0 = _mm_add_pd(fjy0,ty);
987 fjz0 = _mm_add_pd(fjz0,tz);
989 /**************************
990 * CALCULATE INTERACTIONS *
991 **************************/
993 r11 = _mm_mul_pd(rsq11,rinv11);
995 /* EWALD ELECTROSTATICS */
997 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
998 ewrt = _mm_mul_pd(r11,ewtabscale);
999 ewitab = _mm_cvttpd_epi32(ewrt);
1000 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1001 ewitab = _mm_slli_epi32(ewitab,2);
1002 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1003 ewtabD = _mm_setzero_pd();
1004 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1005 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1006 ewtabFn = _mm_setzero_pd();
1007 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1008 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1009 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1010 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
1011 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1013 /* Update potential sum for this i atom from the interaction with this j atom. */
1014 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1015 velecsum = _mm_add_pd(velecsum,velec);
1019 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1021 /* Calculate temporary vectorial force */
1022 tx = _mm_mul_pd(fscal,dx11);
1023 ty = _mm_mul_pd(fscal,dy11);
1024 tz = _mm_mul_pd(fscal,dz11);
1026 /* Update vectorial force */
1027 fix1 = _mm_add_pd(fix1,tx);
1028 fiy1 = _mm_add_pd(fiy1,ty);
1029 fiz1 = _mm_add_pd(fiz1,tz);
1031 fjx1 = _mm_add_pd(fjx1,tx);
1032 fjy1 = _mm_add_pd(fjy1,ty);
1033 fjz1 = _mm_add_pd(fjz1,tz);
1035 /**************************
1036 * CALCULATE INTERACTIONS *
1037 **************************/
1039 r12 = _mm_mul_pd(rsq12,rinv12);
1041 /* EWALD ELECTROSTATICS */
1043 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1044 ewrt = _mm_mul_pd(r12,ewtabscale);
1045 ewitab = _mm_cvttpd_epi32(ewrt);
1046 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1047 ewitab = _mm_slli_epi32(ewitab,2);
1048 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1049 ewtabD = _mm_setzero_pd();
1050 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1051 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1052 ewtabFn = _mm_setzero_pd();
1053 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1054 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1055 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1056 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
1057 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1059 /* Update potential sum for this i atom from the interaction with this j atom. */
1060 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1061 velecsum = _mm_add_pd(velecsum,velec);
1065 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1067 /* Calculate temporary vectorial force */
1068 tx = _mm_mul_pd(fscal,dx12);
1069 ty = _mm_mul_pd(fscal,dy12);
1070 tz = _mm_mul_pd(fscal,dz12);
1072 /* Update vectorial force */
1073 fix1 = _mm_add_pd(fix1,tx);
1074 fiy1 = _mm_add_pd(fiy1,ty);
1075 fiz1 = _mm_add_pd(fiz1,tz);
1077 fjx2 = _mm_add_pd(fjx2,tx);
1078 fjy2 = _mm_add_pd(fjy2,ty);
1079 fjz2 = _mm_add_pd(fjz2,tz);
1081 /**************************
1082 * CALCULATE INTERACTIONS *
1083 **************************/
1085 r20 = _mm_mul_pd(rsq20,rinv20);
1087 /* EWALD ELECTROSTATICS */
1089 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1090 ewrt = _mm_mul_pd(r20,ewtabscale);
1091 ewitab = _mm_cvttpd_epi32(ewrt);
1092 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1093 ewitab = _mm_slli_epi32(ewitab,2);
1094 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1095 ewtabD = _mm_setzero_pd();
1096 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1097 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1098 ewtabFn = _mm_setzero_pd();
1099 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1100 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1101 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1102 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
1103 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1105 /* Update potential sum for this i atom from the interaction with this j atom. */
1106 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1107 velecsum = _mm_add_pd(velecsum,velec);
1111 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1113 /* Calculate temporary vectorial force */
1114 tx = _mm_mul_pd(fscal,dx20);
1115 ty = _mm_mul_pd(fscal,dy20);
1116 tz = _mm_mul_pd(fscal,dz20);
1118 /* Update vectorial force */
1119 fix2 = _mm_add_pd(fix2,tx);
1120 fiy2 = _mm_add_pd(fiy2,ty);
1121 fiz2 = _mm_add_pd(fiz2,tz);
1123 fjx0 = _mm_add_pd(fjx0,tx);
1124 fjy0 = _mm_add_pd(fjy0,ty);
1125 fjz0 = _mm_add_pd(fjz0,tz);
1127 /**************************
1128 * CALCULATE INTERACTIONS *
1129 **************************/
1131 r21 = _mm_mul_pd(rsq21,rinv21);
1133 /* EWALD ELECTROSTATICS */
1135 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1136 ewrt = _mm_mul_pd(r21,ewtabscale);
1137 ewitab = _mm_cvttpd_epi32(ewrt);
1138 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1139 ewitab = _mm_slli_epi32(ewitab,2);
1140 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1141 ewtabD = _mm_setzero_pd();
1142 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1143 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1144 ewtabFn = _mm_setzero_pd();
1145 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1146 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1147 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1148 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
1149 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1151 /* Update potential sum for this i atom from the interaction with this j atom. */
1152 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1153 velecsum = _mm_add_pd(velecsum,velec);
1157 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1159 /* Calculate temporary vectorial force */
1160 tx = _mm_mul_pd(fscal,dx21);
1161 ty = _mm_mul_pd(fscal,dy21);
1162 tz = _mm_mul_pd(fscal,dz21);
1164 /* Update vectorial force */
1165 fix2 = _mm_add_pd(fix2,tx);
1166 fiy2 = _mm_add_pd(fiy2,ty);
1167 fiz2 = _mm_add_pd(fiz2,tz);
1169 fjx1 = _mm_add_pd(fjx1,tx);
1170 fjy1 = _mm_add_pd(fjy1,ty);
1171 fjz1 = _mm_add_pd(fjz1,tz);
1173 /**************************
1174 * CALCULATE INTERACTIONS *
1175 **************************/
1177 r22 = _mm_mul_pd(rsq22,rinv22);
1179 /* EWALD ELECTROSTATICS */
1181 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1182 ewrt = _mm_mul_pd(r22,ewtabscale);
1183 ewitab = _mm_cvttpd_epi32(ewrt);
1184 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1185 ewitab = _mm_slli_epi32(ewitab,2);
1186 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1187 ewtabD = _mm_setzero_pd();
1188 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1189 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1190 ewtabFn = _mm_setzero_pd();
1191 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1192 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1193 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1194 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
1195 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1197 /* Update potential sum for this i atom from the interaction with this j atom. */
1198 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1199 velecsum = _mm_add_pd(velecsum,velec);
1203 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1205 /* Calculate temporary vectorial force */
1206 tx = _mm_mul_pd(fscal,dx22);
1207 ty = _mm_mul_pd(fscal,dy22);
1208 tz = _mm_mul_pd(fscal,dz22);
1210 /* Update vectorial force */
1211 fix2 = _mm_add_pd(fix2,tx);
1212 fiy2 = _mm_add_pd(fiy2,ty);
1213 fiz2 = _mm_add_pd(fiz2,tz);
1215 fjx2 = _mm_add_pd(fjx2,tx);
1216 fjy2 = _mm_add_pd(fjy2,ty);
1217 fjz2 = _mm_add_pd(fjz2,tz);
1219 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1221 /* Inner loop uses 397 flops */
1224 /* End of innermost loop */
1226 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1227 f+i_coord_offset,fshift+i_shift_offset);
1230 /* Update potential energies */
1231 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1232 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1234 /* Increment number of inner iterations */
1235 inneriter += j_index_end - j_index_start;
1237 /* Outer loop uses 20 flops */
1240 /* Increment number of outer iterations */
1243 /* Update outer/inner flops */
1245 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*397);
1248 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_double
1249 * Electrostatics interaction: Ewald
1250 * VdW interaction: LJEwald
1251 * Geometry: Water3-Water3
1252 * Calculate force/pot: Force
1255 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_double
1256 (t_nblist * gmx_restrict nlist,
1257 rvec * gmx_restrict xx,
1258 rvec * gmx_restrict ff,
1259 struct t_forcerec * gmx_restrict fr,
1260 t_mdatoms * gmx_restrict mdatoms,
1261 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1262 t_nrnb * gmx_restrict nrnb)
1264 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1265 * just 0 for non-waters.
1266 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
1267 * jnr indices corresponding to data put in the four positions in the SIMD register.
1269 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1270 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1272 int j_coord_offsetA,j_coord_offsetB;
1273 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1274 real rcutoff_scalar;
1275 real *shiftvec,*fshift,*x,*f;
1276 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1278 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1280 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1282 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1283 int vdwjidx0A,vdwjidx0B;
1284 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1285 int vdwjidx1A,vdwjidx1B;
1286 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1287 int vdwjidx2A,vdwjidx2B;
1288 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1289 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1290 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1291 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1292 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1293 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1294 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1295 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1296 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1297 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1298 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
1301 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1304 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
1305 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
1315 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
1317 __m128d one_half = _mm_set1_pd(0.5);
1318 __m128d minus_one = _mm_set1_pd(-1.0);
1320 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1322 __m128d dummy_mask,cutoff_mask;
1323 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
1324 __m128d one = _mm_set1_pd(1.0);
1325 __m128d two = _mm_set1_pd(2.0);
1331 jindex = nlist->jindex;
1333 shiftidx = nlist->shift;
1335 shiftvec = fr->shift_vec[0];
1336 fshift = fr->fshift[0];
1337 facel = _mm_set1_pd(fr->ic->epsfac);
1338 charge = mdatoms->chargeA;
1339 nvdwtype = fr->ntype;
1340 vdwparam = fr->nbfp;
1341 vdwtype = mdatoms->typeA;
1342 vdwgridparam = fr->ljpme_c6grid;
1343 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
1344 ewclj = _mm_set1_pd(fr->ic->ewaldcoeff_lj);
1345 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
1347 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
1348 ewtab = fr->ic->tabq_coul_F;
1349 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
1350 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
1352 /* Setup water-specific parameters */
1353 inr = nlist->iinr[0];
1354 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
1355 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
1356 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
1357 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1359 jq0 = _mm_set1_pd(charge[inr+0]);
1360 jq1 = _mm_set1_pd(charge[inr+1]);
1361 jq2 = _mm_set1_pd(charge[inr+2]);
1362 vdwjidx0A = 2*vdwtype[inr+0];
1363 qq00 = _mm_mul_pd(iq0,jq0);
1364 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
1365 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
1366 c6grid_00 = _mm_set1_pd(vdwgridparam[vdwioffset0+vdwjidx0A]);
1367 qq01 = _mm_mul_pd(iq0,jq1);
1368 qq02 = _mm_mul_pd(iq0,jq2);
1369 qq10 = _mm_mul_pd(iq1,jq0);
1370 qq11 = _mm_mul_pd(iq1,jq1);
1371 qq12 = _mm_mul_pd(iq1,jq2);
1372 qq20 = _mm_mul_pd(iq2,jq0);
1373 qq21 = _mm_mul_pd(iq2,jq1);
1374 qq22 = _mm_mul_pd(iq2,jq2);
1376 /* Avoid stupid compiler warnings */
1378 j_coord_offsetA = 0;
1379 j_coord_offsetB = 0;
1384 /* Start outer loop over neighborlists */
1385 for(iidx=0; iidx<nri; iidx++)
1387 /* Load shift vector for this list */
1388 i_shift_offset = DIM*shiftidx[iidx];
1390 /* Load limits for loop over neighbors */
1391 j_index_start = jindex[iidx];
1392 j_index_end = jindex[iidx+1];
1394 /* Get outer coordinate index */
1396 i_coord_offset = DIM*inr;
1398 /* Load i particle coords and add shift vector */
1399 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1400 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1402 fix0 = _mm_setzero_pd();
1403 fiy0 = _mm_setzero_pd();
1404 fiz0 = _mm_setzero_pd();
1405 fix1 = _mm_setzero_pd();
1406 fiy1 = _mm_setzero_pd();
1407 fiz1 = _mm_setzero_pd();
1408 fix2 = _mm_setzero_pd();
1409 fiy2 = _mm_setzero_pd();
1410 fiz2 = _mm_setzero_pd();
1412 /* Start inner kernel loop */
1413 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
1416 /* Get j neighbor index, and coordinate index */
1418 jnrB = jjnr[jidx+1];
1419 j_coord_offsetA = DIM*jnrA;
1420 j_coord_offsetB = DIM*jnrB;
1422 /* load j atom coordinates */
1423 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1424 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1426 /* Calculate displacement vector */
1427 dx00 = _mm_sub_pd(ix0,jx0);
1428 dy00 = _mm_sub_pd(iy0,jy0);
1429 dz00 = _mm_sub_pd(iz0,jz0);
1430 dx01 = _mm_sub_pd(ix0,jx1);
1431 dy01 = _mm_sub_pd(iy0,jy1);
1432 dz01 = _mm_sub_pd(iz0,jz1);
1433 dx02 = _mm_sub_pd(ix0,jx2);
1434 dy02 = _mm_sub_pd(iy0,jy2);
1435 dz02 = _mm_sub_pd(iz0,jz2);
1436 dx10 = _mm_sub_pd(ix1,jx0);
1437 dy10 = _mm_sub_pd(iy1,jy0);
1438 dz10 = _mm_sub_pd(iz1,jz0);
1439 dx11 = _mm_sub_pd(ix1,jx1);
1440 dy11 = _mm_sub_pd(iy1,jy1);
1441 dz11 = _mm_sub_pd(iz1,jz1);
1442 dx12 = _mm_sub_pd(ix1,jx2);
1443 dy12 = _mm_sub_pd(iy1,jy2);
1444 dz12 = _mm_sub_pd(iz1,jz2);
1445 dx20 = _mm_sub_pd(ix2,jx0);
1446 dy20 = _mm_sub_pd(iy2,jy0);
1447 dz20 = _mm_sub_pd(iz2,jz0);
1448 dx21 = _mm_sub_pd(ix2,jx1);
1449 dy21 = _mm_sub_pd(iy2,jy1);
1450 dz21 = _mm_sub_pd(iz2,jz1);
1451 dx22 = _mm_sub_pd(ix2,jx2);
1452 dy22 = _mm_sub_pd(iy2,jy2);
1453 dz22 = _mm_sub_pd(iz2,jz2);
1455 /* Calculate squared distance and things based on it */
1456 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1457 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1458 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1459 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1460 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1461 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1462 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1463 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1464 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1466 rinv00 = sse2_invsqrt_d(rsq00);
1467 rinv01 = sse2_invsqrt_d(rsq01);
1468 rinv02 = sse2_invsqrt_d(rsq02);
1469 rinv10 = sse2_invsqrt_d(rsq10);
1470 rinv11 = sse2_invsqrt_d(rsq11);
1471 rinv12 = sse2_invsqrt_d(rsq12);
1472 rinv20 = sse2_invsqrt_d(rsq20);
1473 rinv21 = sse2_invsqrt_d(rsq21);
1474 rinv22 = sse2_invsqrt_d(rsq22);
1476 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1477 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1478 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1479 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1480 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1481 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1482 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1483 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1484 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1486 fjx0 = _mm_setzero_pd();
1487 fjy0 = _mm_setzero_pd();
1488 fjz0 = _mm_setzero_pd();
1489 fjx1 = _mm_setzero_pd();
1490 fjy1 = _mm_setzero_pd();
1491 fjz1 = _mm_setzero_pd();
1492 fjx2 = _mm_setzero_pd();
1493 fjy2 = _mm_setzero_pd();
1494 fjz2 = _mm_setzero_pd();
1496 /**************************
1497 * CALCULATE INTERACTIONS *
1498 **************************/
1500 r00 = _mm_mul_pd(rsq00,rinv00);
1502 /* EWALD ELECTROSTATICS */
1504 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1505 ewrt = _mm_mul_pd(r00,ewtabscale);
1506 ewitab = _mm_cvttpd_epi32(ewrt);
1507 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1508 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1510 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1511 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1513 /* Analytical LJ-PME */
1514 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1515 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1516 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1517 exponent = sse2_exp_d(ewcljrsq);
1518 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1519 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1520 /* f6A = 6 * C6grid * (1 - poly) */
1521 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1522 /* f6B = C6grid * exponent * beta^6 */
1523 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1524 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1525 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1527 fscal = _mm_add_pd(felec,fvdw);
1529 /* Calculate temporary vectorial force */
1530 tx = _mm_mul_pd(fscal,dx00);
1531 ty = _mm_mul_pd(fscal,dy00);
1532 tz = _mm_mul_pd(fscal,dz00);
1534 /* Update vectorial force */
1535 fix0 = _mm_add_pd(fix0,tx);
1536 fiy0 = _mm_add_pd(fiy0,ty);
1537 fiz0 = _mm_add_pd(fiz0,tz);
1539 fjx0 = _mm_add_pd(fjx0,tx);
1540 fjy0 = _mm_add_pd(fjy0,ty);
1541 fjz0 = _mm_add_pd(fjz0,tz);
1543 /**************************
1544 * CALCULATE INTERACTIONS *
1545 **************************/
1547 r01 = _mm_mul_pd(rsq01,rinv01);
1549 /* EWALD ELECTROSTATICS */
1551 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1552 ewrt = _mm_mul_pd(r01,ewtabscale);
1553 ewitab = _mm_cvttpd_epi32(ewrt);
1554 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1555 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1557 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1558 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1562 /* Calculate temporary vectorial force */
1563 tx = _mm_mul_pd(fscal,dx01);
1564 ty = _mm_mul_pd(fscal,dy01);
1565 tz = _mm_mul_pd(fscal,dz01);
1567 /* Update vectorial force */
1568 fix0 = _mm_add_pd(fix0,tx);
1569 fiy0 = _mm_add_pd(fiy0,ty);
1570 fiz0 = _mm_add_pd(fiz0,tz);
1572 fjx1 = _mm_add_pd(fjx1,tx);
1573 fjy1 = _mm_add_pd(fjy1,ty);
1574 fjz1 = _mm_add_pd(fjz1,tz);
1576 /**************************
1577 * CALCULATE INTERACTIONS *
1578 **************************/
1580 r02 = _mm_mul_pd(rsq02,rinv02);
1582 /* EWALD ELECTROSTATICS */
1584 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1585 ewrt = _mm_mul_pd(r02,ewtabscale);
1586 ewitab = _mm_cvttpd_epi32(ewrt);
1587 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1588 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1590 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1591 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1595 /* Calculate temporary vectorial force */
1596 tx = _mm_mul_pd(fscal,dx02);
1597 ty = _mm_mul_pd(fscal,dy02);
1598 tz = _mm_mul_pd(fscal,dz02);
1600 /* Update vectorial force */
1601 fix0 = _mm_add_pd(fix0,tx);
1602 fiy0 = _mm_add_pd(fiy0,ty);
1603 fiz0 = _mm_add_pd(fiz0,tz);
1605 fjx2 = _mm_add_pd(fjx2,tx);
1606 fjy2 = _mm_add_pd(fjy2,ty);
1607 fjz2 = _mm_add_pd(fjz2,tz);
1609 /**************************
1610 * CALCULATE INTERACTIONS *
1611 **************************/
1613 r10 = _mm_mul_pd(rsq10,rinv10);
1615 /* EWALD ELECTROSTATICS */
1617 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1618 ewrt = _mm_mul_pd(r10,ewtabscale);
1619 ewitab = _mm_cvttpd_epi32(ewrt);
1620 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1621 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1623 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1624 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1628 /* Calculate temporary vectorial force */
1629 tx = _mm_mul_pd(fscal,dx10);
1630 ty = _mm_mul_pd(fscal,dy10);
1631 tz = _mm_mul_pd(fscal,dz10);
1633 /* Update vectorial force */
1634 fix1 = _mm_add_pd(fix1,tx);
1635 fiy1 = _mm_add_pd(fiy1,ty);
1636 fiz1 = _mm_add_pd(fiz1,tz);
1638 fjx0 = _mm_add_pd(fjx0,tx);
1639 fjy0 = _mm_add_pd(fjy0,ty);
1640 fjz0 = _mm_add_pd(fjz0,tz);
1642 /**************************
1643 * CALCULATE INTERACTIONS *
1644 **************************/
1646 r11 = _mm_mul_pd(rsq11,rinv11);
1648 /* EWALD ELECTROSTATICS */
1650 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1651 ewrt = _mm_mul_pd(r11,ewtabscale);
1652 ewitab = _mm_cvttpd_epi32(ewrt);
1653 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1654 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1656 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1657 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1661 /* Calculate temporary vectorial force */
1662 tx = _mm_mul_pd(fscal,dx11);
1663 ty = _mm_mul_pd(fscal,dy11);
1664 tz = _mm_mul_pd(fscal,dz11);
1666 /* Update vectorial force */
1667 fix1 = _mm_add_pd(fix1,tx);
1668 fiy1 = _mm_add_pd(fiy1,ty);
1669 fiz1 = _mm_add_pd(fiz1,tz);
1671 fjx1 = _mm_add_pd(fjx1,tx);
1672 fjy1 = _mm_add_pd(fjy1,ty);
1673 fjz1 = _mm_add_pd(fjz1,tz);
1675 /**************************
1676 * CALCULATE INTERACTIONS *
1677 **************************/
1679 r12 = _mm_mul_pd(rsq12,rinv12);
1681 /* EWALD ELECTROSTATICS */
1683 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1684 ewrt = _mm_mul_pd(r12,ewtabscale);
1685 ewitab = _mm_cvttpd_epi32(ewrt);
1686 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1687 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1689 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1690 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1694 /* Calculate temporary vectorial force */
1695 tx = _mm_mul_pd(fscal,dx12);
1696 ty = _mm_mul_pd(fscal,dy12);
1697 tz = _mm_mul_pd(fscal,dz12);
1699 /* Update vectorial force */
1700 fix1 = _mm_add_pd(fix1,tx);
1701 fiy1 = _mm_add_pd(fiy1,ty);
1702 fiz1 = _mm_add_pd(fiz1,tz);
1704 fjx2 = _mm_add_pd(fjx2,tx);
1705 fjy2 = _mm_add_pd(fjy2,ty);
1706 fjz2 = _mm_add_pd(fjz2,tz);
1708 /**************************
1709 * CALCULATE INTERACTIONS *
1710 **************************/
1712 r20 = _mm_mul_pd(rsq20,rinv20);
1714 /* EWALD ELECTROSTATICS */
1716 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1717 ewrt = _mm_mul_pd(r20,ewtabscale);
1718 ewitab = _mm_cvttpd_epi32(ewrt);
1719 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1720 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1722 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1723 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1727 /* Calculate temporary vectorial force */
1728 tx = _mm_mul_pd(fscal,dx20);
1729 ty = _mm_mul_pd(fscal,dy20);
1730 tz = _mm_mul_pd(fscal,dz20);
1732 /* Update vectorial force */
1733 fix2 = _mm_add_pd(fix2,tx);
1734 fiy2 = _mm_add_pd(fiy2,ty);
1735 fiz2 = _mm_add_pd(fiz2,tz);
1737 fjx0 = _mm_add_pd(fjx0,tx);
1738 fjy0 = _mm_add_pd(fjy0,ty);
1739 fjz0 = _mm_add_pd(fjz0,tz);
1741 /**************************
1742 * CALCULATE INTERACTIONS *
1743 **************************/
1745 r21 = _mm_mul_pd(rsq21,rinv21);
1747 /* EWALD ELECTROSTATICS */
1749 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1750 ewrt = _mm_mul_pd(r21,ewtabscale);
1751 ewitab = _mm_cvttpd_epi32(ewrt);
1752 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1753 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1755 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1756 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1760 /* Calculate temporary vectorial force */
1761 tx = _mm_mul_pd(fscal,dx21);
1762 ty = _mm_mul_pd(fscal,dy21);
1763 tz = _mm_mul_pd(fscal,dz21);
1765 /* Update vectorial force */
1766 fix2 = _mm_add_pd(fix2,tx);
1767 fiy2 = _mm_add_pd(fiy2,ty);
1768 fiz2 = _mm_add_pd(fiz2,tz);
1770 fjx1 = _mm_add_pd(fjx1,tx);
1771 fjy1 = _mm_add_pd(fjy1,ty);
1772 fjz1 = _mm_add_pd(fjz1,tz);
1774 /**************************
1775 * CALCULATE INTERACTIONS *
1776 **************************/
1778 r22 = _mm_mul_pd(rsq22,rinv22);
1780 /* EWALD ELECTROSTATICS */
1782 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1783 ewrt = _mm_mul_pd(r22,ewtabscale);
1784 ewitab = _mm_cvttpd_epi32(ewrt);
1785 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1786 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1788 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1789 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1793 /* Calculate temporary vectorial force */
1794 tx = _mm_mul_pd(fscal,dx22);
1795 ty = _mm_mul_pd(fscal,dy22);
1796 tz = _mm_mul_pd(fscal,dz22);
1798 /* Update vectorial force */
1799 fix2 = _mm_add_pd(fix2,tx);
1800 fiy2 = _mm_add_pd(fiy2,ty);
1801 fiz2 = _mm_add_pd(fiz2,tz);
1803 fjx2 = _mm_add_pd(fjx2,tx);
1804 fjy2 = _mm_add_pd(fjy2,ty);
1805 fjz2 = _mm_add_pd(fjz2,tz);
1807 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1809 /* Inner loop uses 347 flops */
1812 if(jidx<j_index_end)
1816 j_coord_offsetA = DIM*jnrA;
1818 /* load j atom coordinates */
1819 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1820 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1822 /* Calculate displacement vector */
1823 dx00 = _mm_sub_pd(ix0,jx0);
1824 dy00 = _mm_sub_pd(iy0,jy0);
1825 dz00 = _mm_sub_pd(iz0,jz0);
1826 dx01 = _mm_sub_pd(ix0,jx1);
1827 dy01 = _mm_sub_pd(iy0,jy1);
1828 dz01 = _mm_sub_pd(iz0,jz1);
1829 dx02 = _mm_sub_pd(ix0,jx2);
1830 dy02 = _mm_sub_pd(iy0,jy2);
1831 dz02 = _mm_sub_pd(iz0,jz2);
1832 dx10 = _mm_sub_pd(ix1,jx0);
1833 dy10 = _mm_sub_pd(iy1,jy0);
1834 dz10 = _mm_sub_pd(iz1,jz0);
1835 dx11 = _mm_sub_pd(ix1,jx1);
1836 dy11 = _mm_sub_pd(iy1,jy1);
1837 dz11 = _mm_sub_pd(iz1,jz1);
1838 dx12 = _mm_sub_pd(ix1,jx2);
1839 dy12 = _mm_sub_pd(iy1,jy2);
1840 dz12 = _mm_sub_pd(iz1,jz2);
1841 dx20 = _mm_sub_pd(ix2,jx0);
1842 dy20 = _mm_sub_pd(iy2,jy0);
1843 dz20 = _mm_sub_pd(iz2,jz0);
1844 dx21 = _mm_sub_pd(ix2,jx1);
1845 dy21 = _mm_sub_pd(iy2,jy1);
1846 dz21 = _mm_sub_pd(iz2,jz1);
1847 dx22 = _mm_sub_pd(ix2,jx2);
1848 dy22 = _mm_sub_pd(iy2,jy2);
1849 dz22 = _mm_sub_pd(iz2,jz2);
1851 /* Calculate squared distance and things based on it */
1852 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1853 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1854 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1855 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1856 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1857 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1858 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1859 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1860 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1862 rinv00 = sse2_invsqrt_d(rsq00);
1863 rinv01 = sse2_invsqrt_d(rsq01);
1864 rinv02 = sse2_invsqrt_d(rsq02);
1865 rinv10 = sse2_invsqrt_d(rsq10);
1866 rinv11 = sse2_invsqrt_d(rsq11);
1867 rinv12 = sse2_invsqrt_d(rsq12);
1868 rinv20 = sse2_invsqrt_d(rsq20);
1869 rinv21 = sse2_invsqrt_d(rsq21);
1870 rinv22 = sse2_invsqrt_d(rsq22);
1872 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1873 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1874 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1875 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1876 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1877 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1878 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1879 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1880 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1882 fjx0 = _mm_setzero_pd();
1883 fjy0 = _mm_setzero_pd();
1884 fjz0 = _mm_setzero_pd();
1885 fjx1 = _mm_setzero_pd();
1886 fjy1 = _mm_setzero_pd();
1887 fjz1 = _mm_setzero_pd();
1888 fjx2 = _mm_setzero_pd();
1889 fjy2 = _mm_setzero_pd();
1890 fjz2 = _mm_setzero_pd();
1892 /**************************
1893 * CALCULATE INTERACTIONS *
1894 **************************/
1896 r00 = _mm_mul_pd(rsq00,rinv00);
1898 /* EWALD ELECTROSTATICS */
1900 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1901 ewrt = _mm_mul_pd(r00,ewtabscale);
1902 ewitab = _mm_cvttpd_epi32(ewrt);
1903 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1904 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1905 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1906 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1908 /* Analytical LJ-PME */
1909 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1910 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1911 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1912 exponent = sse2_exp_d(ewcljrsq);
1913 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1914 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1915 /* f6A = 6 * C6grid * (1 - poly) */
1916 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1917 /* f6B = C6grid * exponent * beta^6 */
1918 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1919 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1920 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1922 fscal = _mm_add_pd(felec,fvdw);
1924 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1926 /* Calculate temporary vectorial force */
1927 tx = _mm_mul_pd(fscal,dx00);
1928 ty = _mm_mul_pd(fscal,dy00);
1929 tz = _mm_mul_pd(fscal,dz00);
1931 /* Update vectorial force */
1932 fix0 = _mm_add_pd(fix0,tx);
1933 fiy0 = _mm_add_pd(fiy0,ty);
1934 fiz0 = _mm_add_pd(fiz0,tz);
1936 fjx0 = _mm_add_pd(fjx0,tx);
1937 fjy0 = _mm_add_pd(fjy0,ty);
1938 fjz0 = _mm_add_pd(fjz0,tz);
1940 /**************************
1941 * CALCULATE INTERACTIONS *
1942 **************************/
1944 r01 = _mm_mul_pd(rsq01,rinv01);
1946 /* EWALD ELECTROSTATICS */
1948 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1949 ewrt = _mm_mul_pd(r01,ewtabscale);
1950 ewitab = _mm_cvttpd_epi32(ewrt);
1951 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1952 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1953 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1954 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1958 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1960 /* Calculate temporary vectorial force */
1961 tx = _mm_mul_pd(fscal,dx01);
1962 ty = _mm_mul_pd(fscal,dy01);
1963 tz = _mm_mul_pd(fscal,dz01);
1965 /* Update vectorial force */
1966 fix0 = _mm_add_pd(fix0,tx);
1967 fiy0 = _mm_add_pd(fiy0,ty);
1968 fiz0 = _mm_add_pd(fiz0,tz);
1970 fjx1 = _mm_add_pd(fjx1,tx);
1971 fjy1 = _mm_add_pd(fjy1,ty);
1972 fjz1 = _mm_add_pd(fjz1,tz);
1974 /**************************
1975 * CALCULATE INTERACTIONS *
1976 **************************/
1978 r02 = _mm_mul_pd(rsq02,rinv02);
1980 /* EWALD ELECTROSTATICS */
1982 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1983 ewrt = _mm_mul_pd(r02,ewtabscale);
1984 ewitab = _mm_cvttpd_epi32(ewrt);
1985 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1986 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1987 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1988 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1992 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1994 /* Calculate temporary vectorial force */
1995 tx = _mm_mul_pd(fscal,dx02);
1996 ty = _mm_mul_pd(fscal,dy02);
1997 tz = _mm_mul_pd(fscal,dz02);
1999 /* Update vectorial force */
2000 fix0 = _mm_add_pd(fix0,tx);
2001 fiy0 = _mm_add_pd(fiy0,ty);
2002 fiz0 = _mm_add_pd(fiz0,tz);
2004 fjx2 = _mm_add_pd(fjx2,tx);
2005 fjy2 = _mm_add_pd(fjy2,ty);
2006 fjz2 = _mm_add_pd(fjz2,tz);
2008 /**************************
2009 * CALCULATE INTERACTIONS *
2010 **************************/
2012 r10 = _mm_mul_pd(rsq10,rinv10);
2014 /* EWALD ELECTROSTATICS */
2016 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2017 ewrt = _mm_mul_pd(r10,ewtabscale);
2018 ewitab = _mm_cvttpd_epi32(ewrt);
2019 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2020 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2021 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2022 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
2026 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2028 /* Calculate temporary vectorial force */
2029 tx = _mm_mul_pd(fscal,dx10);
2030 ty = _mm_mul_pd(fscal,dy10);
2031 tz = _mm_mul_pd(fscal,dz10);
2033 /* Update vectorial force */
2034 fix1 = _mm_add_pd(fix1,tx);
2035 fiy1 = _mm_add_pd(fiy1,ty);
2036 fiz1 = _mm_add_pd(fiz1,tz);
2038 fjx0 = _mm_add_pd(fjx0,tx);
2039 fjy0 = _mm_add_pd(fjy0,ty);
2040 fjz0 = _mm_add_pd(fjz0,tz);
2042 /**************************
2043 * CALCULATE INTERACTIONS *
2044 **************************/
2046 r11 = _mm_mul_pd(rsq11,rinv11);
2048 /* EWALD ELECTROSTATICS */
2050 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2051 ewrt = _mm_mul_pd(r11,ewtabscale);
2052 ewitab = _mm_cvttpd_epi32(ewrt);
2053 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2054 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2055 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2056 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
2060 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2062 /* Calculate temporary vectorial force */
2063 tx = _mm_mul_pd(fscal,dx11);
2064 ty = _mm_mul_pd(fscal,dy11);
2065 tz = _mm_mul_pd(fscal,dz11);
2067 /* Update vectorial force */
2068 fix1 = _mm_add_pd(fix1,tx);
2069 fiy1 = _mm_add_pd(fiy1,ty);
2070 fiz1 = _mm_add_pd(fiz1,tz);
2072 fjx1 = _mm_add_pd(fjx1,tx);
2073 fjy1 = _mm_add_pd(fjy1,ty);
2074 fjz1 = _mm_add_pd(fjz1,tz);
2076 /**************************
2077 * CALCULATE INTERACTIONS *
2078 **************************/
2080 r12 = _mm_mul_pd(rsq12,rinv12);
2082 /* EWALD ELECTROSTATICS */
2084 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2085 ewrt = _mm_mul_pd(r12,ewtabscale);
2086 ewitab = _mm_cvttpd_epi32(ewrt);
2087 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2088 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2089 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2090 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
2094 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2096 /* Calculate temporary vectorial force */
2097 tx = _mm_mul_pd(fscal,dx12);
2098 ty = _mm_mul_pd(fscal,dy12);
2099 tz = _mm_mul_pd(fscal,dz12);
2101 /* Update vectorial force */
2102 fix1 = _mm_add_pd(fix1,tx);
2103 fiy1 = _mm_add_pd(fiy1,ty);
2104 fiz1 = _mm_add_pd(fiz1,tz);
2106 fjx2 = _mm_add_pd(fjx2,tx);
2107 fjy2 = _mm_add_pd(fjy2,ty);
2108 fjz2 = _mm_add_pd(fjz2,tz);
2110 /**************************
2111 * CALCULATE INTERACTIONS *
2112 **************************/
2114 r20 = _mm_mul_pd(rsq20,rinv20);
2116 /* EWALD ELECTROSTATICS */
2118 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2119 ewrt = _mm_mul_pd(r20,ewtabscale);
2120 ewitab = _mm_cvttpd_epi32(ewrt);
2121 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2122 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2123 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2124 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
2128 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2130 /* Calculate temporary vectorial force */
2131 tx = _mm_mul_pd(fscal,dx20);
2132 ty = _mm_mul_pd(fscal,dy20);
2133 tz = _mm_mul_pd(fscal,dz20);
2135 /* Update vectorial force */
2136 fix2 = _mm_add_pd(fix2,tx);
2137 fiy2 = _mm_add_pd(fiy2,ty);
2138 fiz2 = _mm_add_pd(fiz2,tz);
2140 fjx0 = _mm_add_pd(fjx0,tx);
2141 fjy0 = _mm_add_pd(fjy0,ty);
2142 fjz0 = _mm_add_pd(fjz0,tz);
2144 /**************************
2145 * CALCULATE INTERACTIONS *
2146 **************************/
2148 r21 = _mm_mul_pd(rsq21,rinv21);
2150 /* EWALD ELECTROSTATICS */
2152 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2153 ewrt = _mm_mul_pd(r21,ewtabscale);
2154 ewitab = _mm_cvttpd_epi32(ewrt);
2155 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2156 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2157 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2158 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
2162 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2164 /* Calculate temporary vectorial force */
2165 tx = _mm_mul_pd(fscal,dx21);
2166 ty = _mm_mul_pd(fscal,dy21);
2167 tz = _mm_mul_pd(fscal,dz21);
2169 /* Update vectorial force */
2170 fix2 = _mm_add_pd(fix2,tx);
2171 fiy2 = _mm_add_pd(fiy2,ty);
2172 fiz2 = _mm_add_pd(fiz2,tz);
2174 fjx1 = _mm_add_pd(fjx1,tx);
2175 fjy1 = _mm_add_pd(fjy1,ty);
2176 fjz1 = _mm_add_pd(fjz1,tz);
2178 /**************************
2179 * CALCULATE INTERACTIONS *
2180 **************************/
2182 r22 = _mm_mul_pd(rsq22,rinv22);
2184 /* EWALD ELECTROSTATICS */
2186 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2187 ewrt = _mm_mul_pd(r22,ewtabscale);
2188 ewitab = _mm_cvttpd_epi32(ewrt);
2189 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2190 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2191 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2192 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
2196 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2198 /* Calculate temporary vectorial force */
2199 tx = _mm_mul_pd(fscal,dx22);
2200 ty = _mm_mul_pd(fscal,dy22);
2201 tz = _mm_mul_pd(fscal,dz22);
2203 /* Update vectorial force */
2204 fix2 = _mm_add_pd(fix2,tx);
2205 fiy2 = _mm_add_pd(fiy2,ty);
2206 fiz2 = _mm_add_pd(fiz2,tz);
2208 fjx2 = _mm_add_pd(fjx2,tx);
2209 fjy2 = _mm_add_pd(fjy2,ty);
2210 fjz2 = _mm_add_pd(fjz2,tz);
2212 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2214 /* Inner loop uses 347 flops */
2217 /* End of innermost loop */
2219 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2220 f+i_coord_offset,fshift+i_shift_offset);
2222 /* Increment number of inner iterations */
2223 inneriter += j_index_end - j_index_start;
2225 /* Outer loop uses 18 flops */
2228 /* Increment number of outer iterations */
2231 /* Update outer/inner flops */
2233 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*347);