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36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
47 #include "gromacs/simd/math_x86_sse2_double.h"
48 #include "kernelutil_x86_sse2_double.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_double
52 * Electrostatics interaction: Ewald
53 * VdW interaction: LJEwald
54 * Geometry: Water3-Water3
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_VF_sse2_double
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
75 int j_coord_offsetA,j_coord_offsetB;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
81 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
83 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
85 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
86 int vdwjidx0A,vdwjidx0B;
87 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
88 int vdwjidx1A,vdwjidx1B;
89 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
90 int vdwjidx2A,vdwjidx2B;
91 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
92 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
93 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
94 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
95 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
96 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
97 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
98 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
99 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
100 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
101 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
104 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
107 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
108 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
118 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
120 __m128d one_half = _mm_set1_pd(0.5);
121 __m128d minus_one = _mm_set1_pd(-1.0);
123 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
125 __m128d dummy_mask,cutoff_mask;
126 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
127 __m128d one = _mm_set1_pd(1.0);
128 __m128d two = _mm_set1_pd(2.0);
134 jindex = nlist->jindex;
136 shiftidx = nlist->shift;
138 shiftvec = fr->shift_vec[0];
139 fshift = fr->fshift[0];
140 facel = _mm_set1_pd(fr->epsfac);
141 charge = mdatoms->chargeA;
142 nvdwtype = fr->ntype;
144 vdwtype = mdatoms->typeA;
145 vdwgridparam = fr->ljpme_c6grid;
146 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
147 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
148 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
150 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
151 ewtab = fr->ic->tabq_coul_FDV0;
152 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
153 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
155 /* Setup water-specific parameters */
156 inr = nlist->iinr[0];
157 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
158 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
159 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
160 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
162 jq0 = _mm_set1_pd(charge[inr+0]);
163 jq1 = _mm_set1_pd(charge[inr+1]);
164 jq2 = _mm_set1_pd(charge[inr+2]);
165 vdwjidx0A = 2*vdwtype[inr+0];
166 qq00 = _mm_mul_pd(iq0,jq0);
167 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
168 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
169 c6grid_00 = _mm_set1_pd(vdwgridparam[vdwioffset0+vdwjidx0A]);
170 qq01 = _mm_mul_pd(iq0,jq1);
171 qq02 = _mm_mul_pd(iq0,jq2);
172 qq10 = _mm_mul_pd(iq1,jq0);
173 qq11 = _mm_mul_pd(iq1,jq1);
174 qq12 = _mm_mul_pd(iq1,jq2);
175 qq20 = _mm_mul_pd(iq2,jq0);
176 qq21 = _mm_mul_pd(iq2,jq1);
177 qq22 = _mm_mul_pd(iq2,jq2);
179 /* Avoid stupid compiler warnings */
187 /* Start outer loop over neighborlists */
188 for(iidx=0; iidx<nri; iidx++)
190 /* Load shift vector for this list */
191 i_shift_offset = DIM*shiftidx[iidx];
193 /* Load limits for loop over neighbors */
194 j_index_start = jindex[iidx];
195 j_index_end = jindex[iidx+1];
197 /* Get outer coordinate index */
199 i_coord_offset = DIM*inr;
201 /* Load i particle coords and add shift vector */
202 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
203 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
205 fix0 = _mm_setzero_pd();
206 fiy0 = _mm_setzero_pd();
207 fiz0 = _mm_setzero_pd();
208 fix1 = _mm_setzero_pd();
209 fiy1 = _mm_setzero_pd();
210 fiz1 = _mm_setzero_pd();
211 fix2 = _mm_setzero_pd();
212 fiy2 = _mm_setzero_pd();
213 fiz2 = _mm_setzero_pd();
215 /* Reset potential sums */
216 velecsum = _mm_setzero_pd();
217 vvdwsum = _mm_setzero_pd();
219 /* Start inner kernel loop */
220 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
223 /* Get j neighbor index, and coordinate index */
226 j_coord_offsetA = DIM*jnrA;
227 j_coord_offsetB = DIM*jnrB;
229 /* load j atom coordinates */
230 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
231 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
233 /* Calculate displacement vector */
234 dx00 = _mm_sub_pd(ix0,jx0);
235 dy00 = _mm_sub_pd(iy0,jy0);
236 dz00 = _mm_sub_pd(iz0,jz0);
237 dx01 = _mm_sub_pd(ix0,jx1);
238 dy01 = _mm_sub_pd(iy0,jy1);
239 dz01 = _mm_sub_pd(iz0,jz1);
240 dx02 = _mm_sub_pd(ix0,jx2);
241 dy02 = _mm_sub_pd(iy0,jy2);
242 dz02 = _mm_sub_pd(iz0,jz2);
243 dx10 = _mm_sub_pd(ix1,jx0);
244 dy10 = _mm_sub_pd(iy1,jy0);
245 dz10 = _mm_sub_pd(iz1,jz0);
246 dx11 = _mm_sub_pd(ix1,jx1);
247 dy11 = _mm_sub_pd(iy1,jy1);
248 dz11 = _mm_sub_pd(iz1,jz1);
249 dx12 = _mm_sub_pd(ix1,jx2);
250 dy12 = _mm_sub_pd(iy1,jy2);
251 dz12 = _mm_sub_pd(iz1,jz2);
252 dx20 = _mm_sub_pd(ix2,jx0);
253 dy20 = _mm_sub_pd(iy2,jy0);
254 dz20 = _mm_sub_pd(iz2,jz0);
255 dx21 = _mm_sub_pd(ix2,jx1);
256 dy21 = _mm_sub_pd(iy2,jy1);
257 dz21 = _mm_sub_pd(iz2,jz1);
258 dx22 = _mm_sub_pd(ix2,jx2);
259 dy22 = _mm_sub_pd(iy2,jy2);
260 dz22 = _mm_sub_pd(iz2,jz2);
262 /* Calculate squared distance and things based on it */
263 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
264 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
265 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
266 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
267 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
268 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
269 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
270 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
271 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
273 rinv00 = gmx_mm_invsqrt_pd(rsq00);
274 rinv01 = gmx_mm_invsqrt_pd(rsq01);
275 rinv02 = gmx_mm_invsqrt_pd(rsq02);
276 rinv10 = gmx_mm_invsqrt_pd(rsq10);
277 rinv11 = gmx_mm_invsqrt_pd(rsq11);
278 rinv12 = gmx_mm_invsqrt_pd(rsq12);
279 rinv20 = gmx_mm_invsqrt_pd(rsq20);
280 rinv21 = gmx_mm_invsqrt_pd(rsq21);
281 rinv22 = gmx_mm_invsqrt_pd(rsq22);
283 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
284 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
285 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
286 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
287 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
288 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
289 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
290 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
291 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
293 fjx0 = _mm_setzero_pd();
294 fjy0 = _mm_setzero_pd();
295 fjz0 = _mm_setzero_pd();
296 fjx1 = _mm_setzero_pd();
297 fjy1 = _mm_setzero_pd();
298 fjz1 = _mm_setzero_pd();
299 fjx2 = _mm_setzero_pd();
300 fjy2 = _mm_setzero_pd();
301 fjz2 = _mm_setzero_pd();
303 /**************************
304 * CALCULATE INTERACTIONS *
305 **************************/
307 r00 = _mm_mul_pd(rsq00,rinv00);
309 /* EWALD ELECTROSTATICS */
311 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
312 ewrt = _mm_mul_pd(r00,ewtabscale);
313 ewitab = _mm_cvttpd_epi32(ewrt);
314 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
315 ewitab = _mm_slli_epi32(ewitab,2);
316 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
317 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
318 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
319 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
320 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
321 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
322 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
323 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
324 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
325 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
327 /* Analytical LJ-PME */
328 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
329 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
330 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
331 exponent = gmx_simd_exp_d(ewcljrsq);
332 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
333 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
334 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
335 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
336 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
337 vvdw = _mm_sub_pd(_mm_mul_pd(vvdw12,one_twelfth),_mm_mul_pd(vvdw6,one_sixth));
338 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
339 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
341 /* Update potential sum for this i atom from the interaction with this j atom. */
342 velecsum = _mm_add_pd(velecsum,velec);
343 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
345 fscal = _mm_add_pd(felec,fvdw);
347 /* Calculate temporary vectorial force */
348 tx = _mm_mul_pd(fscal,dx00);
349 ty = _mm_mul_pd(fscal,dy00);
350 tz = _mm_mul_pd(fscal,dz00);
352 /* Update vectorial force */
353 fix0 = _mm_add_pd(fix0,tx);
354 fiy0 = _mm_add_pd(fiy0,ty);
355 fiz0 = _mm_add_pd(fiz0,tz);
357 fjx0 = _mm_add_pd(fjx0,tx);
358 fjy0 = _mm_add_pd(fjy0,ty);
359 fjz0 = _mm_add_pd(fjz0,tz);
361 /**************************
362 * CALCULATE INTERACTIONS *
363 **************************/
365 r01 = _mm_mul_pd(rsq01,rinv01);
367 /* EWALD ELECTROSTATICS */
369 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
370 ewrt = _mm_mul_pd(r01,ewtabscale);
371 ewitab = _mm_cvttpd_epi32(ewrt);
372 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
373 ewitab = _mm_slli_epi32(ewitab,2);
374 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
375 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
376 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
377 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
378 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
379 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
380 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
381 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
382 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
383 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
385 /* Update potential sum for this i atom from the interaction with this j atom. */
386 velecsum = _mm_add_pd(velecsum,velec);
390 /* Calculate temporary vectorial force */
391 tx = _mm_mul_pd(fscal,dx01);
392 ty = _mm_mul_pd(fscal,dy01);
393 tz = _mm_mul_pd(fscal,dz01);
395 /* Update vectorial force */
396 fix0 = _mm_add_pd(fix0,tx);
397 fiy0 = _mm_add_pd(fiy0,ty);
398 fiz0 = _mm_add_pd(fiz0,tz);
400 fjx1 = _mm_add_pd(fjx1,tx);
401 fjy1 = _mm_add_pd(fjy1,ty);
402 fjz1 = _mm_add_pd(fjz1,tz);
404 /**************************
405 * CALCULATE INTERACTIONS *
406 **************************/
408 r02 = _mm_mul_pd(rsq02,rinv02);
410 /* EWALD ELECTROSTATICS */
412 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
413 ewrt = _mm_mul_pd(r02,ewtabscale);
414 ewitab = _mm_cvttpd_epi32(ewrt);
415 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
416 ewitab = _mm_slli_epi32(ewitab,2);
417 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
418 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
419 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
420 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
421 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
422 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
423 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
424 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
425 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
426 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
428 /* Update potential sum for this i atom from the interaction with this j atom. */
429 velecsum = _mm_add_pd(velecsum,velec);
433 /* Calculate temporary vectorial force */
434 tx = _mm_mul_pd(fscal,dx02);
435 ty = _mm_mul_pd(fscal,dy02);
436 tz = _mm_mul_pd(fscal,dz02);
438 /* Update vectorial force */
439 fix0 = _mm_add_pd(fix0,tx);
440 fiy0 = _mm_add_pd(fiy0,ty);
441 fiz0 = _mm_add_pd(fiz0,tz);
443 fjx2 = _mm_add_pd(fjx2,tx);
444 fjy2 = _mm_add_pd(fjy2,ty);
445 fjz2 = _mm_add_pd(fjz2,tz);
447 /**************************
448 * CALCULATE INTERACTIONS *
449 **************************/
451 r10 = _mm_mul_pd(rsq10,rinv10);
453 /* EWALD ELECTROSTATICS */
455 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
456 ewrt = _mm_mul_pd(r10,ewtabscale);
457 ewitab = _mm_cvttpd_epi32(ewrt);
458 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
459 ewitab = _mm_slli_epi32(ewitab,2);
460 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
461 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
462 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
463 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
464 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
465 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
466 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
467 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
468 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
469 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
471 /* Update potential sum for this i atom from the interaction with this j atom. */
472 velecsum = _mm_add_pd(velecsum,velec);
476 /* Calculate temporary vectorial force */
477 tx = _mm_mul_pd(fscal,dx10);
478 ty = _mm_mul_pd(fscal,dy10);
479 tz = _mm_mul_pd(fscal,dz10);
481 /* Update vectorial force */
482 fix1 = _mm_add_pd(fix1,tx);
483 fiy1 = _mm_add_pd(fiy1,ty);
484 fiz1 = _mm_add_pd(fiz1,tz);
486 fjx0 = _mm_add_pd(fjx0,tx);
487 fjy0 = _mm_add_pd(fjy0,ty);
488 fjz0 = _mm_add_pd(fjz0,tz);
490 /**************************
491 * CALCULATE INTERACTIONS *
492 **************************/
494 r11 = _mm_mul_pd(rsq11,rinv11);
496 /* EWALD ELECTROSTATICS */
498 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
499 ewrt = _mm_mul_pd(r11,ewtabscale);
500 ewitab = _mm_cvttpd_epi32(ewrt);
501 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
502 ewitab = _mm_slli_epi32(ewitab,2);
503 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
504 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
505 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
506 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
507 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
508 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
509 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
510 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
511 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
512 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
514 /* Update potential sum for this i atom from the interaction with this j atom. */
515 velecsum = _mm_add_pd(velecsum,velec);
519 /* Calculate temporary vectorial force */
520 tx = _mm_mul_pd(fscal,dx11);
521 ty = _mm_mul_pd(fscal,dy11);
522 tz = _mm_mul_pd(fscal,dz11);
524 /* Update vectorial force */
525 fix1 = _mm_add_pd(fix1,tx);
526 fiy1 = _mm_add_pd(fiy1,ty);
527 fiz1 = _mm_add_pd(fiz1,tz);
529 fjx1 = _mm_add_pd(fjx1,tx);
530 fjy1 = _mm_add_pd(fjy1,ty);
531 fjz1 = _mm_add_pd(fjz1,tz);
533 /**************************
534 * CALCULATE INTERACTIONS *
535 **************************/
537 r12 = _mm_mul_pd(rsq12,rinv12);
539 /* EWALD ELECTROSTATICS */
541 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
542 ewrt = _mm_mul_pd(r12,ewtabscale);
543 ewitab = _mm_cvttpd_epi32(ewrt);
544 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
545 ewitab = _mm_slli_epi32(ewitab,2);
546 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
547 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
548 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
549 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
550 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
551 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
552 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
553 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
554 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
555 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
557 /* Update potential sum for this i atom from the interaction with this j atom. */
558 velecsum = _mm_add_pd(velecsum,velec);
562 /* Calculate temporary vectorial force */
563 tx = _mm_mul_pd(fscal,dx12);
564 ty = _mm_mul_pd(fscal,dy12);
565 tz = _mm_mul_pd(fscal,dz12);
567 /* Update vectorial force */
568 fix1 = _mm_add_pd(fix1,tx);
569 fiy1 = _mm_add_pd(fiy1,ty);
570 fiz1 = _mm_add_pd(fiz1,tz);
572 fjx2 = _mm_add_pd(fjx2,tx);
573 fjy2 = _mm_add_pd(fjy2,ty);
574 fjz2 = _mm_add_pd(fjz2,tz);
576 /**************************
577 * CALCULATE INTERACTIONS *
578 **************************/
580 r20 = _mm_mul_pd(rsq20,rinv20);
582 /* EWALD ELECTROSTATICS */
584 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
585 ewrt = _mm_mul_pd(r20,ewtabscale);
586 ewitab = _mm_cvttpd_epi32(ewrt);
587 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
588 ewitab = _mm_slli_epi32(ewitab,2);
589 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
590 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
591 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
592 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
593 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
594 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
595 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
596 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
597 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
598 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
600 /* Update potential sum for this i atom from the interaction with this j atom. */
601 velecsum = _mm_add_pd(velecsum,velec);
605 /* Calculate temporary vectorial force */
606 tx = _mm_mul_pd(fscal,dx20);
607 ty = _mm_mul_pd(fscal,dy20);
608 tz = _mm_mul_pd(fscal,dz20);
610 /* Update vectorial force */
611 fix2 = _mm_add_pd(fix2,tx);
612 fiy2 = _mm_add_pd(fiy2,ty);
613 fiz2 = _mm_add_pd(fiz2,tz);
615 fjx0 = _mm_add_pd(fjx0,tx);
616 fjy0 = _mm_add_pd(fjy0,ty);
617 fjz0 = _mm_add_pd(fjz0,tz);
619 /**************************
620 * CALCULATE INTERACTIONS *
621 **************************/
623 r21 = _mm_mul_pd(rsq21,rinv21);
625 /* EWALD ELECTROSTATICS */
627 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
628 ewrt = _mm_mul_pd(r21,ewtabscale);
629 ewitab = _mm_cvttpd_epi32(ewrt);
630 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
631 ewitab = _mm_slli_epi32(ewitab,2);
632 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
633 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
634 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
635 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
636 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
637 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
638 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
639 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
640 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
641 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
643 /* Update potential sum for this i atom from the interaction with this j atom. */
644 velecsum = _mm_add_pd(velecsum,velec);
648 /* Calculate temporary vectorial force */
649 tx = _mm_mul_pd(fscal,dx21);
650 ty = _mm_mul_pd(fscal,dy21);
651 tz = _mm_mul_pd(fscal,dz21);
653 /* Update vectorial force */
654 fix2 = _mm_add_pd(fix2,tx);
655 fiy2 = _mm_add_pd(fiy2,ty);
656 fiz2 = _mm_add_pd(fiz2,tz);
658 fjx1 = _mm_add_pd(fjx1,tx);
659 fjy1 = _mm_add_pd(fjy1,ty);
660 fjz1 = _mm_add_pd(fjz1,tz);
662 /**************************
663 * CALCULATE INTERACTIONS *
664 **************************/
666 r22 = _mm_mul_pd(rsq22,rinv22);
668 /* EWALD ELECTROSTATICS */
670 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
671 ewrt = _mm_mul_pd(r22,ewtabscale);
672 ewitab = _mm_cvttpd_epi32(ewrt);
673 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
674 ewitab = _mm_slli_epi32(ewitab,2);
675 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
676 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
677 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
678 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
679 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
680 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
681 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
682 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
683 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
684 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
686 /* Update potential sum for this i atom from the interaction with this j atom. */
687 velecsum = _mm_add_pd(velecsum,velec);
691 /* Calculate temporary vectorial force */
692 tx = _mm_mul_pd(fscal,dx22);
693 ty = _mm_mul_pd(fscal,dy22);
694 tz = _mm_mul_pd(fscal,dz22);
696 /* Update vectorial force */
697 fix2 = _mm_add_pd(fix2,tx);
698 fiy2 = _mm_add_pd(fiy2,ty);
699 fiz2 = _mm_add_pd(fiz2,tz);
701 fjx2 = _mm_add_pd(fjx2,tx);
702 fjy2 = _mm_add_pd(fjy2,ty);
703 fjz2 = _mm_add_pd(fjz2,tz);
705 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
707 /* Inner loop uses 397 flops */
714 j_coord_offsetA = DIM*jnrA;
716 /* load j atom coordinates */
717 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
718 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
720 /* Calculate displacement vector */
721 dx00 = _mm_sub_pd(ix0,jx0);
722 dy00 = _mm_sub_pd(iy0,jy0);
723 dz00 = _mm_sub_pd(iz0,jz0);
724 dx01 = _mm_sub_pd(ix0,jx1);
725 dy01 = _mm_sub_pd(iy0,jy1);
726 dz01 = _mm_sub_pd(iz0,jz1);
727 dx02 = _mm_sub_pd(ix0,jx2);
728 dy02 = _mm_sub_pd(iy0,jy2);
729 dz02 = _mm_sub_pd(iz0,jz2);
730 dx10 = _mm_sub_pd(ix1,jx0);
731 dy10 = _mm_sub_pd(iy1,jy0);
732 dz10 = _mm_sub_pd(iz1,jz0);
733 dx11 = _mm_sub_pd(ix1,jx1);
734 dy11 = _mm_sub_pd(iy1,jy1);
735 dz11 = _mm_sub_pd(iz1,jz1);
736 dx12 = _mm_sub_pd(ix1,jx2);
737 dy12 = _mm_sub_pd(iy1,jy2);
738 dz12 = _mm_sub_pd(iz1,jz2);
739 dx20 = _mm_sub_pd(ix2,jx0);
740 dy20 = _mm_sub_pd(iy2,jy0);
741 dz20 = _mm_sub_pd(iz2,jz0);
742 dx21 = _mm_sub_pd(ix2,jx1);
743 dy21 = _mm_sub_pd(iy2,jy1);
744 dz21 = _mm_sub_pd(iz2,jz1);
745 dx22 = _mm_sub_pd(ix2,jx2);
746 dy22 = _mm_sub_pd(iy2,jy2);
747 dz22 = _mm_sub_pd(iz2,jz2);
749 /* Calculate squared distance and things based on it */
750 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
751 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
752 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
753 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
754 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
755 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
756 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
757 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
758 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
760 rinv00 = gmx_mm_invsqrt_pd(rsq00);
761 rinv01 = gmx_mm_invsqrt_pd(rsq01);
762 rinv02 = gmx_mm_invsqrt_pd(rsq02);
763 rinv10 = gmx_mm_invsqrt_pd(rsq10);
764 rinv11 = gmx_mm_invsqrt_pd(rsq11);
765 rinv12 = gmx_mm_invsqrt_pd(rsq12);
766 rinv20 = gmx_mm_invsqrt_pd(rsq20);
767 rinv21 = gmx_mm_invsqrt_pd(rsq21);
768 rinv22 = gmx_mm_invsqrt_pd(rsq22);
770 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
771 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
772 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
773 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
774 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
775 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
776 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
777 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
778 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
780 fjx0 = _mm_setzero_pd();
781 fjy0 = _mm_setzero_pd();
782 fjz0 = _mm_setzero_pd();
783 fjx1 = _mm_setzero_pd();
784 fjy1 = _mm_setzero_pd();
785 fjz1 = _mm_setzero_pd();
786 fjx2 = _mm_setzero_pd();
787 fjy2 = _mm_setzero_pd();
788 fjz2 = _mm_setzero_pd();
790 /**************************
791 * CALCULATE INTERACTIONS *
792 **************************/
794 r00 = _mm_mul_pd(rsq00,rinv00);
796 /* EWALD ELECTROSTATICS */
798 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
799 ewrt = _mm_mul_pd(r00,ewtabscale);
800 ewitab = _mm_cvttpd_epi32(ewrt);
801 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
802 ewitab = _mm_slli_epi32(ewitab,2);
803 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
804 ewtabD = _mm_setzero_pd();
805 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
806 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
807 ewtabFn = _mm_setzero_pd();
808 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
809 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
810 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
811 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
812 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
814 /* Analytical LJ-PME */
815 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
816 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
817 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
818 exponent = gmx_simd_exp_d(ewcljrsq);
819 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
820 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
821 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
822 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
823 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
824 vvdw = _mm_sub_pd(_mm_mul_pd(vvdw12,one_twelfth),_mm_mul_pd(vvdw6,one_sixth));
825 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
826 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
828 /* Update potential sum for this i atom from the interaction with this j atom. */
829 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
830 velecsum = _mm_add_pd(velecsum,velec);
831 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
832 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
834 fscal = _mm_add_pd(felec,fvdw);
836 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
838 /* Calculate temporary vectorial force */
839 tx = _mm_mul_pd(fscal,dx00);
840 ty = _mm_mul_pd(fscal,dy00);
841 tz = _mm_mul_pd(fscal,dz00);
843 /* Update vectorial force */
844 fix0 = _mm_add_pd(fix0,tx);
845 fiy0 = _mm_add_pd(fiy0,ty);
846 fiz0 = _mm_add_pd(fiz0,tz);
848 fjx0 = _mm_add_pd(fjx0,tx);
849 fjy0 = _mm_add_pd(fjy0,ty);
850 fjz0 = _mm_add_pd(fjz0,tz);
852 /**************************
853 * CALCULATE INTERACTIONS *
854 **************************/
856 r01 = _mm_mul_pd(rsq01,rinv01);
858 /* EWALD ELECTROSTATICS */
860 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
861 ewrt = _mm_mul_pd(r01,ewtabscale);
862 ewitab = _mm_cvttpd_epi32(ewrt);
863 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
864 ewitab = _mm_slli_epi32(ewitab,2);
865 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
866 ewtabD = _mm_setzero_pd();
867 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
868 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
869 ewtabFn = _mm_setzero_pd();
870 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
871 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
872 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
873 velec = _mm_mul_pd(qq01,_mm_sub_pd(rinv01,velec));
874 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
876 /* Update potential sum for this i atom from the interaction with this j atom. */
877 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
878 velecsum = _mm_add_pd(velecsum,velec);
882 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
884 /* Calculate temporary vectorial force */
885 tx = _mm_mul_pd(fscal,dx01);
886 ty = _mm_mul_pd(fscal,dy01);
887 tz = _mm_mul_pd(fscal,dz01);
889 /* Update vectorial force */
890 fix0 = _mm_add_pd(fix0,tx);
891 fiy0 = _mm_add_pd(fiy0,ty);
892 fiz0 = _mm_add_pd(fiz0,tz);
894 fjx1 = _mm_add_pd(fjx1,tx);
895 fjy1 = _mm_add_pd(fjy1,ty);
896 fjz1 = _mm_add_pd(fjz1,tz);
898 /**************************
899 * CALCULATE INTERACTIONS *
900 **************************/
902 r02 = _mm_mul_pd(rsq02,rinv02);
904 /* EWALD ELECTROSTATICS */
906 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
907 ewrt = _mm_mul_pd(r02,ewtabscale);
908 ewitab = _mm_cvttpd_epi32(ewrt);
909 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
910 ewitab = _mm_slli_epi32(ewitab,2);
911 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
912 ewtabD = _mm_setzero_pd();
913 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
914 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
915 ewtabFn = _mm_setzero_pd();
916 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
917 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
918 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
919 velec = _mm_mul_pd(qq02,_mm_sub_pd(rinv02,velec));
920 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
922 /* Update potential sum for this i atom from the interaction with this j atom. */
923 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
924 velecsum = _mm_add_pd(velecsum,velec);
928 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
930 /* Calculate temporary vectorial force */
931 tx = _mm_mul_pd(fscal,dx02);
932 ty = _mm_mul_pd(fscal,dy02);
933 tz = _mm_mul_pd(fscal,dz02);
935 /* Update vectorial force */
936 fix0 = _mm_add_pd(fix0,tx);
937 fiy0 = _mm_add_pd(fiy0,ty);
938 fiz0 = _mm_add_pd(fiz0,tz);
940 fjx2 = _mm_add_pd(fjx2,tx);
941 fjy2 = _mm_add_pd(fjy2,ty);
942 fjz2 = _mm_add_pd(fjz2,tz);
944 /**************************
945 * CALCULATE INTERACTIONS *
946 **************************/
948 r10 = _mm_mul_pd(rsq10,rinv10);
950 /* EWALD ELECTROSTATICS */
952 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
953 ewrt = _mm_mul_pd(r10,ewtabscale);
954 ewitab = _mm_cvttpd_epi32(ewrt);
955 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
956 ewitab = _mm_slli_epi32(ewitab,2);
957 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
958 ewtabD = _mm_setzero_pd();
959 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
960 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
961 ewtabFn = _mm_setzero_pd();
962 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
963 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
964 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
965 velec = _mm_mul_pd(qq10,_mm_sub_pd(rinv10,velec));
966 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
968 /* Update potential sum for this i atom from the interaction with this j atom. */
969 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
970 velecsum = _mm_add_pd(velecsum,velec);
974 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
976 /* Calculate temporary vectorial force */
977 tx = _mm_mul_pd(fscal,dx10);
978 ty = _mm_mul_pd(fscal,dy10);
979 tz = _mm_mul_pd(fscal,dz10);
981 /* Update vectorial force */
982 fix1 = _mm_add_pd(fix1,tx);
983 fiy1 = _mm_add_pd(fiy1,ty);
984 fiz1 = _mm_add_pd(fiz1,tz);
986 fjx0 = _mm_add_pd(fjx0,tx);
987 fjy0 = _mm_add_pd(fjy0,ty);
988 fjz0 = _mm_add_pd(fjz0,tz);
990 /**************************
991 * CALCULATE INTERACTIONS *
992 **************************/
994 r11 = _mm_mul_pd(rsq11,rinv11);
996 /* EWALD ELECTROSTATICS */
998 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
999 ewrt = _mm_mul_pd(r11,ewtabscale);
1000 ewitab = _mm_cvttpd_epi32(ewrt);
1001 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1002 ewitab = _mm_slli_epi32(ewitab,2);
1003 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1004 ewtabD = _mm_setzero_pd();
1005 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1006 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1007 ewtabFn = _mm_setzero_pd();
1008 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1009 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1010 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1011 velec = _mm_mul_pd(qq11,_mm_sub_pd(rinv11,velec));
1012 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1014 /* Update potential sum for this i atom from the interaction with this j atom. */
1015 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1016 velecsum = _mm_add_pd(velecsum,velec);
1020 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1022 /* Calculate temporary vectorial force */
1023 tx = _mm_mul_pd(fscal,dx11);
1024 ty = _mm_mul_pd(fscal,dy11);
1025 tz = _mm_mul_pd(fscal,dz11);
1027 /* Update vectorial force */
1028 fix1 = _mm_add_pd(fix1,tx);
1029 fiy1 = _mm_add_pd(fiy1,ty);
1030 fiz1 = _mm_add_pd(fiz1,tz);
1032 fjx1 = _mm_add_pd(fjx1,tx);
1033 fjy1 = _mm_add_pd(fjy1,ty);
1034 fjz1 = _mm_add_pd(fjz1,tz);
1036 /**************************
1037 * CALCULATE INTERACTIONS *
1038 **************************/
1040 r12 = _mm_mul_pd(rsq12,rinv12);
1042 /* EWALD ELECTROSTATICS */
1044 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1045 ewrt = _mm_mul_pd(r12,ewtabscale);
1046 ewitab = _mm_cvttpd_epi32(ewrt);
1047 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1048 ewitab = _mm_slli_epi32(ewitab,2);
1049 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1050 ewtabD = _mm_setzero_pd();
1051 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1052 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1053 ewtabFn = _mm_setzero_pd();
1054 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1055 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1056 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1057 velec = _mm_mul_pd(qq12,_mm_sub_pd(rinv12,velec));
1058 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1060 /* Update potential sum for this i atom from the interaction with this j atom. */
1061 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1062 velecsum = _mm_add_pd(velecsum,velec);
1066 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1068 /* Calculate temporary vectorial force */
1069 tx = _mm_mul_pd(fscal,dx12);
1070 ty = _mm_mul_pd(fscal,dy12);
1071 tz = _mm_mul_pd(fscal,dz12);
1073 /* Update vectorial force */
1074 fix1 = _mm_add_pd(fix1,tx);
1075 fiy1 = _mm_add_pd(fiy1,ty);
1076 fiz1 = _mm_add_pd(fiz1,tz);
1078 fjx2 = _mm_add_pd(fjx2,tx);
1079 fjy2 = _mm_add_pd(fjy2,ty);
1080 fjz2 = _mm_add_pd(fjz2,tz);
1082 /**************************
1083 * CALCULATE INTERACTIONS *
1084 **************************/
1086 r20 = _mm_mul_pd(rsq20,rinv20);
1088 /* EWALD ELECTROSTATICS */
1090 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1091 ewrt = _mm_mul_pd(r20,ewtabscale);
1092 ewitab = _mm_cvttpd_epi32(ewrt);
1093 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1094 ewitab = _mm_slli_epi32(ewitab,2);
1095 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1096 ewtabD = _mm_setzero_pd();
1097 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1098 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1099 ewtabFn = _mm_setzero_pd();
1100 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1101 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1102 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1103 velec = _mm_mul_pd(qq20,_mm_sub_pd(rinv20,velec));
1104 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1106 /* Update potential sum for this i atom from the interaction with this j atom. */
1107 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1108 velecsum = _mm_add_pd(velecsum,velec);
1112 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1114 /* Calculate temporary vectorial force */
1115 tx = _mm_mul_pd(fscal,dx20);
1116 ty = _mm_mul_pd(fscal,dy20);
1117 tz = _mm_mul_pd(fscal,dz20);
1119 /* Update vectorial force */
1120 fix2 = _mm_add_pd(fix2,tx);
1121 fiy2 = _mm_add_pd(fiy2,ty);
1122 fiz2 = _mm_add_pd(fiz2,tz);
1124 fjx0 = _mm_add_pd(fjx0,tx);
1125 fjy0 = _mm_add_pd(fjy0,ty);
1126 fjz0 = _mm_add_pd(fjz0,tz);
1128 /**************************
1129 * CALCULATE INTERACTIONS *
1130 **************************/
1132 r21 = _mm_mul_pd(rsq21,rinv21);
1134 /* EWALD ELECTROSTATICS */
1136 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1137 ewrt = _mm_mul_pd(r21,ewtabscale);
1138 ewitab = _mm_cvttpd_epi32(ewrt);
1139 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1140 ewitab = _mm_slli_epi32(ewitab,2);
1141 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1142 ewtabD = _mm_setzero_pd();
1143 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1144 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1145 ewtabFn = _mm_setzero_pd();
1146 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1147 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1148 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1149 velec = _mm_mul_pd(qq21,_mm_sub_pd(rinv21,velec));
1150 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1152 /* Update potential sum for this i atom from the interaction with this j atom. */
1153 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1154 velecsum = _mm_add_pd(velecsum,velec);
1158 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1160 /* Calculate temporary vectorial force */
1161 tx = _mm_mul_pd(fscal,dx21);
1162 ty = _mm_mul_pd(fscal,dy21);
1163 tz = _mm_mul_pd(fscal,dz21);
1165 /* Update vectorial force */
1166 fix2 = _mm_add_pd(fix2,tx);
1167 fiy2 = _mm_add_pd(fiy2,ty);
1168 fiz2 = _mm_add_pd(fiz2,tz);
1170 fjx1 = _mm_add_pd(fjx1,tx);
1171 fjy1 = _mm_add_pd(fjy1,ty);
1172 fjz1 = _mm_add_pd(fjz1,tz);
1174 /**************************
1175 * CALCULATE INTERACTIONS *
1176 **************************/
1178 r22 = _mm_mul_pd(rsq22,rinv22);
1180 /* EWALD ELECTROSTATICS */
1182 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1183 ewrt = _mm_mul_pd(r22,ewtabscale);
1184 ewitab = _mm_cvttpd_epi32(ewrt);
1185 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1186 ewitab = _mm_slli_epi32(ewitab,2);
1187 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1188 ewtabD = _mm_setzero_pd();
1189 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
1190 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
1191 ewtabFn = _mm_setzero_pd();
1192 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
1193 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
1194 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
1195 velec = _mm_mul_pd(qq22,_mm_sub_pd(rinv22,velec));
1196 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1198 /* Update potential sum for this i atom from the interaction with this j atom. */
1199 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
1200 velecsum = _mm_add_pd(velecsum,velec);
1204 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1206 /* Calculate temporary vectorial force */
1207 tx = _mm_mul_pd(fscal,dx22);
1208 ty = _mm_mul_pd(fscal,dy22);
1209 tz = _mm_mul_pd(fscal,dz22);
1211 /* Update vectorial force */
1212 fix2 = _mm_add_pd(fix2,tx);
1213 fiy2 = _mm_add_pd(fiy2,ty);
1214 fiz2 = _mm_add_pd(fiz2,tz);
1216 fjx2 = _mm_add_pd(fjx2,tx);
1217 fjy2 = _mm_add_pd(fjy2,ty);
1218 fjz2 = _mm_add_pd(fjz2,tz);
1220 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1222 /* Inner loop uses 397 flops */
1225 /* End of innermost loop */
1227 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1228 f+i_coord_offset,fshift+i_shift_offset);
1231 /* Update potential energies */
1232 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1233 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1235 /* Increment number of inner iterations */
1236 inneriter += j_index_end - j_index_start;
1238 /* Outer loop uses 20 flops */
1241 /* Increment number of outer iterations */
1244 /* Update outer/inner flops */
1246 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*397);
1249 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_double
1250 * Electrostatics interaction: Ewald
1251 * VdW interaction: LJEwald
1252 * Geometry: Water3-Water3
1253 * Calculate force/pot: Force
1256 nb_kernel_ElecEw_VdwLJEw_GeomW3W3_F_sse2_double
1257 (t_nblist * gmx_restrict nlist,
1258 rvec * gmx_restrict xx,
1259 rvec * gmx_restrict ff,
1260 t_forcerec * gmx_restrict fr,
1261 t_mdatoms * gmx_restrict mdatoms,
1262 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1263 t_nrnb * gmx_restrict nrnb)
1265 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1266 * just 0 for non-waters.
1267 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
1268 * jnr indices corresponding to data put in the four positions in the SIMD register.
1270 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1271 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1273 int j_coord_offsetA,j_coord_offsetB;
1274 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1275 real rcutoff_scalar;
1276 real *shiftvec,*fshift,*x,*f;
1277 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1279 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1281 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1283 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1284 int vdwjidx0A,vdwjidx0B;
1285 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1286 int vdwjidx1A,vdwjidx1B;
1287 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1288 int vdwjidx2A,vdwjidx2B;
1289 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1290 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1291 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1292 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1293 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1294 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1295 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1296 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1297 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1298 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1299 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
1302 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1305 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
1306 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
1316 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
1318 __m128d one_half = _mm_set1_pd(0.5);
1319 __m128d minus_one = _mm_set1_pd(-1.0);
1321 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1323 __m128d dummy_mask,cutoff_mask;
1324 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
1325 __m128d one = _mm_set1_pd(1.0);
1326 __m128d two = _mm_set1_pd(2.0);
1332 jindex = nlist->jindex;
1334 shiftidx = nlist->shift;
1336 shiftvec = fr->shift_vec[0];
1337 fshift = fr->fshift[0];
1338 facel = _mm_set1_pd(fr->epsfac);
1339 charge = mdatoms->chargeA;
1340 nvdwtype = fr->ntype;
1341 vdwparam = fr->nbfp;
1342 vdwtype = mdatoms->typeA;
1343 vdwgridparam = fr->ljpme_c6grid;
1344 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
1345 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
1346 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
1348 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
1349 ewtab = fr->ic->tabq_coul_F;
1350 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
1351 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
1353 /* Setup water-specific parameters */
1354 inr = nlist->iinr[0];
1355 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
1356 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
1357 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
1358 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1360 jq0 = _mm_set1_pd(charge[inr+0]);
1361 jq1 = _mm_set1_pd(charge[inr+1]);
1362 jq2 = _mm_set1_pd(charge[inr+2]);
1363 vdwjidx0A = 2*vdwtype[inr+0];
1364 qq00 = _mm_mul_pd(iq0,jq0);
1365 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
1366 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
1367 c6grid_00 = _mm_set1_pd(vdwgridparam[vdwioffset0+vdwjidx0A]);
1368 qq01 = _mm_mul_pd(iq0,jq1);
1369 qq02 = _mm_mul_pd(iq0,jq2);
1370 qq10 = _mm_mul_pd(iq1,jq0);
1371 qq11 = _mm_mul_pd(iq1,jq1);
1372 qq12 = _mm_mul_pd(iq1,jq2);
1373 qq20 = _mm_mul_pd(iq2,jq0);
1374 qq21 = _mm_mul_pd(iq2,jq1);
1375 qq22 = _mm_mul_pd(iq2,jq2);
1377 /* Avoid stupid compiler warnings */
1379 j_coord_offsetA = 0;
1380 j_coord_offsetB = 0;
1385 /* Start outer loop over neighborlists */
1386 for(iidx=0; iidx<nri; iidx++)
1388 /* Load shift vector for this list */
1389 i_shift_offset = DIM*shiftidx[iidx];
1391 /* Load limits for loop over neighbors */
1392 j_index_start = jindex[iidx];
1393 j_index_end = jindex[iidx+1];
1395 /* Get outer coordinate index */
1397 i_coord_offset = DIM*inr;
1399 /* Load i particle coords and add shift vector */
1400 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1401 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1403 fix0 = _mm_setzero_pd();
1404 fiy0 = _mm_setzero_pd();
1405 fiz0 = _mm_setzero_pd();
1406 fix1 = _mm_setzero_pd();
1407 fiy1 = _mm_setzero_pd();
1408 fiz1 = _mm_setzero_pd();
1409 fix2 = _mm_setzero_pd();
1410 fiy2 = _mm_setzero_pd();
1411 fiz2 = _mm_setzero_pd();
1413 /* Start inner kernel loop */
1414 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
1417 /* Get j neighbor index, and coordinate index */
1419 jnrB = jjnr[jidx+1];
1420 j_coord_offsetA = DIM*jnrA;
1421 j_coord_offsetB = DIM*jnrB;
1423 /* load j atom coordinates */
1424 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1425 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1427 /* Calculate displacement vector */
1428 dx00 = _mm_sub_pd(ix0,jx0);
1429 dy00 = _mm_sub_pd(iy0,jy0);
1430 dz00 = _mm_sub_pd(iz0,jz0);
1431 dx01 = _mm_sub_pd(ix0,jx1);
1432 dy01 = _mm_sub_pd(iy0,jy1);
1433 dz01 = _mm_sub_pd(iz0,jz1);
1434 dx02 = _mm_sub_pd(ix0,jx2);
1435 dy02 = _mm_sub_pd(iy0,jy2);
1436 dz02 = _mm_sub_pd(iz0,jz2);
1437 dx10 = _mm_sub_pd(ix1,jx0);
1438 dy10 = _mm_sub_pd(iy1,jy0);
1439 dz10 = _mm_sub_pd(iz1,jz0);
1440 dx11 = _mm_sub_pd(ix1,jx1);
1441 dy11 = _mm_sub_pd(iy1,jy1);
1442 dz11 = _mm_sub_pd(iz1,jz1);
1443 dx12 = _mm_sub_pd(ix1,jx2);
1444 dy12 = _mm_sub_pd(iy1,jy2);
1445 dz12 = _mm_sub_pd(iz1,jz2);
1446 dx20 = _mm_sub_pd(ix2,jx0);
1447 dy20 = _mm_sub_pd(iy2,jy0);
1448 dz20 = _mm_sub_pd(iz2,jz0);
1449 dx21 = _mm_sub_pd(ix2,jx1);
1450 dy21 = _mm_sub_pd(iy2,jy1);
1451 dz21 = _mm_sub_pd(iz2,jz1);
1452 dx22 = _mm_sub_pd(ix2,jx2);
1453 dy22 = _mm_sub_pd(iy2,jy2);
1454 dz22 = _mm_sub_pd(iz2,jz2);
1456 /* Calculate squared distance and things based on it */
1457 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1458 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1459 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1460 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1461 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1462 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1463 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1464 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1465 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1467 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1468 rinv01 = gmx_mm_invsqrt_pd(rsq01);
1469 rinv02 = gmx_mm_invsqrt_pd(rsq02);
1470 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1471 rinv11 = gmx_mm_invsqrt_pd(rsq11);
1472 rinv12 = gmx_mm_invsqrt_pd(rsq12);
1473 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1474 rinv21 = gmx_mm_invsqrt_pd(rsq21);
1475 rinv22 = gmx_mm_invsqrt_pd(rsq22);
1477 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1478 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1479 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1480 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1481 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1482 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1483 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1484 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1485 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1487 fjx0 = _mm_setzero_pd();
1488 fjy0 = _mm_setzero_pd();
1489 fjz0 = _mm_setzero_pd();
1490 fjx1 = _mm_setzero_pd();
1491 fjy1 = _mm_setzero_pd();
1492 fjz1 = _mm_setzero_pd();
1493 fjx2 = _mm_setzero_pd();
1494 fjy2 = _mm_setzero_pd();
1495 fjz2 = _mm_setzero_pd();
1497 /**************************
1498 * CALCULATE INTERACTIONS *
1499 **************************/
1501 r00 = _mm_mul_pd(rsq00,rinv00);
1503 /* EWALD ELECTROSTATICS */
1505 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1506 ewrt = _mm_mul_pd(r00,ewtabscale);
1507 ewitab = _mm_cvttpd_epi32(ewrt);
1508 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1509 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1511 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1512 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1514 /* Analytical LJ-PME */
1515 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1516 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1517 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1518 exponent = gmx_simd_exp_d(ewcljrsq);
1519 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1520 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1521 /* f6A = 6 * C6grid * (1 - poly) */
1522 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1523 /* f6B = C6grid * exponent * beta^6 */
1524 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1525 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1526 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1528 fscal = _mm_add_pd(felec,fvdw);
1530 /* Calculate temporary vectorial force */
1531 tx = _mm_mul_pd(fscal,dx00);
1532 ty = _mm_mul_pd(fscal,dy00);
1533 tz = _mm_mul_pd(fscal,dz00);
1535 /* Update vectorial force */
1536 fix0 = _mm_add_pd(fix0,tx);
1537 fiy0 = _mm_add_pd(fiy0,ty);
1538 fiz0 = _mm_add_pd(fiz0,tz);
1540 fjx0 = _mm_add_pd(fjx0,tx);
1541 fjy0 = _mm_add_pd(fjy0,ty);
1542 fjz0 = _mm_add_pd(fjz0,tz);
1544 /**************************
1545 * CALCULATE INTERACTIONS *
1546 **************************/
1548 r01 = _mm_mul_pd(rsq01,rinv01);
1550 /* EWALD ELECTROSTATICS */
1552 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1553 ewrt = _mm_mul_pd(r01,ewtabscale);
1554 ewitab = _mm_cvttpd_epi32(ewrt);
1555 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1556 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1558 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1559 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1563 /* Calculate temporary vectorial force */
1564 tx = _mm_mul_pd(fscal,dx01);
1565 ty = _mm_mul_pd(fscal,dy01);
1566 tz = _mm_mul_pd(fscal,dz01);
1568 /* Update vectorial force */
1569 fix0 = _mm_add_pd(fix0,tx);
1570 fiy0 = _mm_add_pd(fiy0,ty);
1571 fiz0 = _mm_add_pd(fiz0,tz);
1573 fjx1 = _mm_add_pd(fjx1,tx);
1574 fjy1 = _mm_add_pd(fjy1,ty);
1575 fjz1 = _mm_add_pd(fjz1,tz);
1577 /**************************
1578 * CALCULATE INTERACTIONS *
1579 **************************/
1581 r02 = _mm_mul_pd(rsq02,rinv02);
1583 /* EWALD ELECTROSTATICS */
1585 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1586 ewrt = _mm_mul_pd(r02,ewtabscale);
1587 ewitab = _mm_cvttpd_epi32(ewrt);
1588 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1589 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1591 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1592 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1596 /* Calculate temporary vectorial force */
1597 tx = _mm_mul_pd(fscal,dx02);
1598 ty = _mm_mul_pd(fscal,dy02);
1599 tz = _mm_mul_pd(fscal,dz02);
1601 /* Update vectorial force */
1602 fix0 = _mm_add_pd(fix0,tx);
1603 fiy0 = _mm_add_pd(fiy0,ty);
1604 fiz0 = _mm_add_pd(fiz0,tz);
1606 fjx2 = _mm_add_pd(fjx2,tx);
1607 fjy2 = _mm_add_pd(fjy2,ty);
1608 fjz2 = _mm_add_pd(fjz2,tz);
1610 /**************************
1611 * CALCULATE INTERACTIONS *
1612 **************************/
1614 r10 = _mm_mul_pd(rsq10,rinv10);
1616 /* EWALD ELECTROSTATICS */
1618 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1619 ewrt = _mm_mul_pd(r10,ewtabscale);
1620 ewitab = _mm_cvttpd_epi32(ewrt);
1621 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1622 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1624 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1625 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1629 /* Calculate temporary vectorial force */
1630 tx = _mm_mul_pd(fscal,dx10);
1631 ty = _mm_mul_pd(fscal,dy10);
1632 tz = _mm_mul_pd(fscal,dz10);
1634 /* Update vectorial force */
1635 fix1 = _mm_add_pd(fix1,tx);
1636 fiy1 = _mm_add_pd(fiy1,ty);
1637 fiz1 = _mm_add_pd(fiz1,tz);
1639 fjx0 = _mm_add_pd(fjx0,tx);
1640 fjy0 = _mm_add_pd(fjy0,ty);
1641 fjz0 = _mm_add_pd(fjz0,tz);
1643 /**************************
1644 * CALCULATE INTERACTIONS *
1645 **************************/
1647 r11 = _mm_mul_pd(rsq11,rinv11);
1649 /* EWALD ELECTROSTATICS */
1651 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1652 ewrt = _mm_mul_pd(r11,ewtabscale);
1653 ewitab = _mm_cvttpd_epi32(ewrt);
1654 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1655 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1657 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1658 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
1662 /* Calculate temporary vectorial force */
1663 tx = _mm_mul_pd(fscal,dx11);
1664 ty = _mm_mul_pd(fscal,dy11);
1665 tz = _mm_mul_pd(fscal,dz11);
1667 /* Update vectorial force */
1668 fix1 = _mm_add_pd(fix1,tx);
1669 fiy1 = _mm_add_pd(fiy1,ty);
1670 fiz1 = _mm_add_pd(fiz1,tz);
1672 fjx1 = _mm_add_pd(fjx1,tx);
1673 fjy1 = _mm_add_pd(fjy1,ty);
1674 fjz1 = _mm_add_pd(fjz1,tz);
1676 /**************************
1677 * CALCULATE INTERACTIONS *
1678 **************************/
1680 r12 = _mm_mul_pd(rsq12,rinv12);
1682 /* EWALD ELECTROSTATICS */
1684 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1685 ewrt = _mm_mul_pd(r12,ewtabscale);
1686 ewitab = _mm_cvttpd_epi32(ewrt);
1687 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1688 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1690 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1691 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
1695 /* Calculate temporary vectorial force */
1696 tx = _mm_mul_pd(fscal,dx12);
1697 ty = _mm_mul_pd(fscal,dy12);
1698 tz = _mm_mul_pd(fscal,dz12);
1700 /* Update vectorial force */
1701 fix1 = _mm_add_pd(fix1,tx);
1702 fiy1 = _mm_add_pd(fiy1,ty);
1703 fiz1 = _mm_add_pd(fiz1,tz);
1705 fjx2 = _mm_add_pd(fjx2,tx);
1706 fjy2 = _mm_add_pd(fjy2,ty);
1707 fjz2 = _mm_add_pd(fjz2,tz);
1709 /**************************
1710 * CALCULATE INTERACTIONS *
1711 **************************/
1713 r20 = _mm_mul_pd(rsq20,rinv20);
1715 /* EWALD ELECTROSTATICS */
1717 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1718 ewrt = _mm_mul_pd(r20,ewtabscale);
1719 ewitab = _mm_cvttpd_epi32(ewrt);
1720 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1721 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1723 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1724 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1728 /* Calculate temporary vectorial force */
1729 tx = _mm_mul_pd(fscal,dx20);
1730 ty = _mm_mul_pd(fscal,dy20);
1731 tz = _mm_mul_pd(fscal,dz20);
1733 /* Update vectorial force */
1734 fix2 = _mm_add_pd(fix2,tx);
1735 fiy2 = _mm_add_pd(fiy2,ty);
1736 fiz2 = _mm_add_pd(fiz2,tz);
1738 fjx0 = _mm_add_pd(fjx0,tx);
1739 fjy0 = _mm_add_pd(fjy0,ty);
1740 fjz0 = _mm_add_pd(fjz0,tz);
1742 /**************************
1743 * CALCULATE INTERACTIONS *
1744 **************************/
1746 r21 = _mm_mul_pd(rsq21,rinv21);
1748 /* EWALD ELECTROSTATICS */
1750 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1751 ewrt = _mm_mul_pd(r21,ewtabscale);
1752 ewitab = _mm_cvttpd_epi32(ewrt);
1753 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1754 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1756 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1757 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
1761 /* Calculate temporary vectorial force */
1762 tx = _mm_mul_pd(fscal,dx21);
1763 ty = _mm_mul_pd(fscal,dy21);
1764 tz = _mm_mul_pd(fscal,dz21);
1766 /* Update vectorial force */
1767 fix2 = _mm_add_pd(fix2,tx);
1768 fiy2 = _mm_add_pd(fiy2,ty);
1769 fiz2 = _mm_add_pd(fiz2,tz);
1771 fjx1 = _mm_add_pd(fjx1,tx);
1772 fjy1 = _mm_add_pd(fjy1,ty);
1773 fjz1 = _mm_add_pd(fjz1,tz);
1775 /**************************
1776 * CALCULATE INTERACTIONS *
1777 **************************/
1779 r22 = _mm_mul_pd(rsq22,rinv22);
1781 /* EWALD ELECTROSTATICS */
1783 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1784 ewrt = _mm_mul_pd(r22,ewtabscale);
1785 ewitab = _mm_cvttpd_epi32(ewrt);
1786 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1787 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1789 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1790 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
1794 /* Calculate temporary vectorial force */
1795 tx = _mm_mul_pd(fscal,dx22);
1796 ty = _mm_mul_pd(fscal,dy22);
1797 tz = _mm_mul_pd(fscal,dz22);
1799 /* Update vectorial force */
1800 fix2 = _mm_add_pd(fix2,tx);
1801 fiy2 = _mm_add_pd(fiy2,ty);
1802 fiz2 = _mm_add_pd(fiz2,tz);
1804 fjx2 = _mm_add_pd(fjx2,tx);
1805 fjy2 = _mm_add_pd(fjy2,ty);
1806 fjz2 = _mm_add_pd(fjz2,tz);
1808 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1810 /* Inner loop uses 347 flops */
1813 if(jidx<j_index_end)
1817 j_coord_offsetA = DIM*jnrA;
1819 /* load j atom coordinates */
1820 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1821 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1823 /* Calculate displacement vector */
1824 dx00 = _mm_sub_pd(ix0,jx0);
1825 dy00 = _mm_sub_pd(iy0,jy0);
1826 dz00 = _mm_sub_pd(iz0,jz0);
1827 dx01 = _mm_sub_pd(ix0,jx1);
1828 dy01 = _mm_sub_pd(iy0,jy1);
1829 dz01 = _mm_sub_pd(iz0,jz1);
1830 dx02 = _mm_sub_pd(ix0,jx2);
1831 dy02 = _mm_sub_pd(iy0,jy2);
1832 dz02 = _mm_sub_pd(iz0,jz2);
1833 dx10 = _mm_sub_pd(ix1,jx0);
1834 dy10 = _mm_sub_pd(iy1,jy0);
1835 dz10 = _mm_sub_pd(iz1,jz0);
1836 dx11 = _mm_sub_pd(ix1,jx1);
1837 dy11 = _mm_sub_pd(iy1,jy1);
1838 dz11 = _mm_sub_pd(iz1,jz1);
1839 dx12 = _mm_sub_pd(ix1,jx2);
1840 dy12 = _mm_sub_pd(iy1,jy2);
1841 dz12 = _mm_sub_pd(iz1,jz2);
1842 dx20 = _mm_sub_pd(ix2,jx0);
1843 dy20 = _mm_sub_pd(iy2,jy0);
1844 dz20 = _mm_sub_pd(iz2,jz0);
1845 dx21 = _mm_sub_pd(ix2,jx1);
1846 dy21 = _mm_sub_pd(iy2,jy1);
1847 dz21 = _mm_sub_pd(iz2,jz1);
1848 dx22 = _mm_sub_pd(ix2,jx2);
1849 dy22 = _mm_sub_pd(iy2,jy2);
1850 dz22 = _mm_sub_pd(iz2,jz2);
1852 /* Calculate squared distance and things based on it */
1853 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1854 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1855 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1856 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1857 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1858 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1859 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1860 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1861 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1863 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1864 rinv01 = gmx_mm_invsqrt_pd(rsq01);
1865 rinv02 = gmx_mm_invsqrt_pd(rsq02);
1866 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1867 rinv11 = gmx_mm_invsqrt_pd(rsq11);
1868 rinv12 = gmx_mm_invsqrt_pd(rsq12);
1869 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1870 rinv21 = gmx_mm_invsqrt_pd(rsq21);
1871 rinv22 = gmx_mm_invsqrt_pd(rsq22);
1873 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1874 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1875 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1876 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1877 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1878 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1879 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1880 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1881 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1883 fjx0 = _mm_setzero_pd();
1884 fjy0 = _mm_setzero_pd();
1885 fjz0 = _mm_setzero_pd();
1886 fjx1 = _mm_setzero_pd();
1887 fjy1 = _mm_setzero_pd();
1888 fjz1 = _mm_setzero_pd();
1889 fjx2 = _mm_setzero_pd();
1890 fjy2 = _mm_setzero_pd();
1891 fjz2 = _mm_setzero_pd();
1893 /**************************
1894 * CALCULATE INTERACTIONS *
1895 **************************/
1897 r00 = _mm_mul_pd(rsq00,rinv00);
1899 /* EWALD ELECTROSTATICS */
1901 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1902 ewrt = _mm_mul_pd(r00,ewtabscale);
1903 ewitab = _mm_cvttpd_epi32(ewrt);
1904 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1905 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1906 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1907 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
1909 /* Analytical LJ-PME */
1910 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1911 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1912 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1913 exponent = gmx_simd_exp_d(ewcljrsq);
1914 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1915 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1916 /* f6A = 6 * C6grid * (1 - poly) */
1917 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1918 /* f6B = C6grid * exponent * beta^6 */
1919 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1920 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1921 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1923 fscal = _mm_add_pd(felec,fvdw);
1925 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1927 /* Calculate temporary vectorial force */
1928 tx = _mm_mul_pd(fscal,dx00);
1929 ty = _mm_mul_pd(fscal,dy00);
1930 tz = _mm_mul_pd(fscal,dz00);
1932 /* Update vectorial force */
1933 fix0 = _mm_add_pd(fix0,tx);
1934 fiy0 = _mm_add_pd(fiy0,ty);
1935 fiz0 = _mm_add_pd(fiz0,tz);
1937 fjx0 = _mm_add_pd(fjx0,tx);
1938 fjy0 = _mm_add_pd(fjy0,ty);
1939 fjz0 = _mm_add_pd(fjz0,tz);
1941 /**************************
1942 * CALCULATE INTERACTIONS *
1943 **************************/
1945 r01 = _mm_mul_pd(rsq01,rinv01);
1947 /* EWALD ELECTROSTATICS */
1949 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1950 ewrt = _mm_mul_pd(r01,ewtabscale);
1951 ewitab = _mm_cvttpd_epi32(ewrt);
1952 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1953 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1954 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1955 felec = _mm_mul_pd(_mm_mul_pd(qq01,rinv01),_mm_sub_pd(rinvsq01,felec));
1959 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1961 /* Calculate temporary vectorial force */
1962 tx = _mm_mul_pd(fscal,dx01);
1963 ty = _mm_mul_pd(fscal,dy01);
1964 tz = _mm_mul_pd(fscal,dz01);
1966 /* Update vectorial force */
1967 fix0 = _mm_add_pd(fix0,tx);
1968 fiy0 = _mm_add_pd(fiy0,ty);
1969 fiz0 = _mm_add_pd(fiz0,tz);
1971 fjx1 = _mm_add_pd(fjx1,tx);
1972 fjy1 = _mm_add_pd(fjy1,ty);
1973 fjz1 = _mm_add_pd(fjz1,tz);
1975 /**************************
1976 * CALCULATE INTERACTIONS *
1977 **************************/
1979 r02 = _mm_mul_pd(rsq02,rinv02);
1981 /* EWALD ELECTROSTATICS */
1983 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1984 ewrt = _mm_mul_pd(r02,ewtabscale);
1985 ewitab = _mm_cvttpd_epi32(ewrt);
1986 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1987 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1988 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1989 felec = _mm_mul_pd(_mm_mul_pd(qq02,rinv02),_mm_sub_pd(rinvsq02,felec));
1993 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1995 /* Calculate temporary vectorial force */
1996 tx = _mm_mul_pd(fscal,dx02);
1997 ty = _mm_mul_pd(fscal,dy02);
1998 tz = _mm_mul_pd(fscal,dz02);
2000 /* Update vectorial force */
2001 fix0 = _mm_add_pd(fix0,tx);
2002 fiy0 = _mm_add_pd(fiy0,ty);
2003 fiz0 = _mm_add_pd(fiz0,tz);
2005 fjx2 = _mm_add_pd(fjx2,tx);
2006 fjy2 = _mm_add_pd(fjy2,ty);
2007 fjz2 = _mm_add_pd(fjz2,tz);
2009 /**************************
2010 * CALCULATE INTERACTIONS *
2011 **************************/
2013 r10 = _mm_mul_pd(rsq10,rinv10);
2015 /* EWALD ELECTROSTATICS */
2017 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2018 ewrt = _mm_mul_pd(r10,ewtabscale);
2019 ewitab = _mm_cvttpd_epi32(ewrt);
2020 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2021 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2022 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2023 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
2027 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2029 /* Calculate temporary vectorial force */
2030 tx = _mm_mul_pd(fscal,dx10);
2031 ty = _mm_mul_pd(fscal,dy10);
2032 tz = _mm_mul_pd(fscal,dz10);
2034 /* Update vectorial force */
2035 fix1 = _mm_add_pd(fix1,tx);
2036 fiy1 = _mm_add_pd(fiy1,ty);
2037 fiz1 = _mm_add_pd(fiz1,tz);
2039 fjx0 = _mm_add_pd(fjx0,tx);
2040 fjy0 = _mm_add_pd(fjy0,ty);
2041 fjz0 = _mm_add_pd(fjz0,tz);
2043 /**************************
2044 * CALCULATE INTERACTIONS *
2045 **************************/
2047 r11 = _mm_mul_pd(rsq11,rinv11);
2049 /* EWALD ELECTROSTATICS */
2051 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2052 ewrt = _mm_mul_pd(r11,ewtabscale);
2053 ewitab = _mm_cvttpd_epi32(ewrt);
2054 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2055 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2056 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2057 felec = _mm_mul_pd(_mm_mul_pd(qq11,rinv11),_mm_sub_pd(rinvsq11,felec));
2061 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2063 /* Calculate temporary vectorial force */
2064 tx = _mm_mul_pd(fscal,dx11);
2065 ty = _mm_mul_pd(fscal,dy11);
2066 tz = _mm_mul_pd(fscal,dz11);
2068 /* Update vectorial force */
2069 fix1 = _mm_add_pd(fix1,tx);
2070 fiy1 = _mm_add_pd(fiy1,ty);
2071 fiz1 = _mm_add_pd(fiz1,tz);
2073 fjx1 = _mm_add_pd(fjx1,tx);
2074 fjy1 = _mm_add_pd(fjy1,ty);
2075 fjz1 = _mm_add_pd(fjz1,tz);
2077 /**************************
2078 * CALCULATE INTERACTIONS *
2079 **************************/
2081 r12 = _mm_mul_pd(rsq12,rinv12);
2083 /* EWALD ELECTROSTATICS */
2085 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2086 ewrt = _mm_mul_pd(r12,ewtabscale);
2087 ewitab = _mm_cvttpd_epi32(ewrt);
2088 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2089 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2090 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2091 felec = _mm_mul_pd(_mm_mul_pd(qq12,rinv12),_mm_sub_pd(rinvsq12,felec));
2095 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2097 /* Calculate temporary vectorial force */
2098 tx = _mm_mul_pd(fscal,dx12);
2099 ty = _mm_mul_pd(fscal,dy12);
2100 tz = _mm_mul_pd(fscal,dz12);
2102 /* Update vectorial force */
2103 fix1 = _mm_add_pd(fix1,tx);
2104 fiy1 = _mm_add_pd(fiy1,ty);
2105 fiz1 = _mm_add_pd(fiz1,tz);
2107 fjx2 = _mm_add_pd(fjx2,tx);
2108 fjy2 = _mm_add_pd(fjy2,ty);
2109 fjz2 = _mm_add_pd(fjz2,tz);
2111 /**************************
2112 * CALCULATE INTERACTIONS *
2113 **************************/
2115 r20 = _mm_mul_pd(rsq20,rinv20);
2117 /* EWALD ELECTROSTATICS */
2119 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2120 ewrt = _mm_mul_pd(r20,ewtabscale);
2121 ewitab = _mm_cvttpd_epi32(ewrt);
2122 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2123 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2124 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2125 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
2129 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2131 /* Calculate temporary vectorial force */
2132 tx = _mm_mul_pd(fscal,dx20);
2133 ty = _mm_mul_pd(fscal,dy20);
2134 tz = _mm_mul_pd(fscal,dz20);
2136 /* Update vectorial force */
2137 fix2 = _mm_add_pd(fix2,tx);
2138 fiy2 = _mm_add_pd(fiy2,ty);
2139 fiz2 = _mm_add_pd(fiz2,tz);
2141 fjx0 = _mm_add_pd(fjx0,tx);
2142 fjy0 = _mm_add_pd(fjy0,ty);
2143 fjz0 = _mm_add_pd(fjz0,tz);
2145 /**************************
2146 * CALCULATE INTERACTIONS *
2147 **************************/
2149 r21 = _mm_mul_pd(rsq21,rinv21);
2151 /* EWALD ELECTROSTATICS */
2153 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2154 ewrt = _mm_mul_pd(r21,ewtabscale);
2155 ewitab = _mm_cvttpd_epi32(ewrt);
2156 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2157 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2158 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2159 felec = _mm_mul_pd(_mm_mul_pd(qq21,rinv21),_mm_sub_pd(rinvsq21,felec));
2163 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2165 /* Calculate temporary vectorial force */
2166 tx = _mm_mul_pd(fscal,dx21);
2167 ty = _mm_mul_pd(fscal,dy21);
2168 tz = _mm_mul_pd(fscal,dz21);
2170 /* Update vectorial force */
2171 fix2 = _mm_add_pd(fix2,tx);
2172 fiy2 = _mm_add_pd(fiy2,ty);
2173 fiz2 = _mm_add_pd(fiz2,tz);
2175 fjx1 = _mm_add_pd(fjx1,tx);
2176 fjy1 = _mm_add_pd(fjy1,ty);
2177 fjz1 = _mm_add_pd(fjz1,tz);
2179 /**************************
2180 * CALCULATE INTERACTIONS *
2181 **************************/
2183 r22 = _mm_mul_pd(rsq22,rinv22);
2185 /* EWALD ELECTROSTATICS */
2187 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2188 ewrt = _mm_mul_pd(r22,ewtabscale);
2189 ewitab = _mm_cvttpd_epi32(ewrt);
2190 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
2191 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
2192 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
2193 felec = _mm_mul_pd(_mm_mul_pd(qq22,rinv22),_mm_sub_pd(rinvsq22,felec));
2197 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
2199 /* Calculate temporary vectorial force */
2200 tx = _mm_mul_pd(fscal,dx22);
2201 ty = _mm_mul_pd(fscal,dy22);
2202 tz = _mm_mul_pd(fscal,dz22);
2204 /* Update vectorial force */
2205 fix2 = _mm_add_pd(fix2,tx);
2206 fiy2 = _mm_add_pd(fiy2,ty);
2207 fiz2 = _mm_add_pd(fiz2,tz);
2209 fjx2 = _mm_add_pd(fjx2,tx);
2210 fjy2 = _mm_add_pd(fjy2,ty);
2211 fjz2 = _mm_add_pd(fjz2,tz);
2213 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2215 /* Inner loop uses 347 flops */
2218 /* End of innermost loop */
2220 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2221 f+i_coord_offset,fshift+i_shift_offset);
2223 /* Increment number of inner iterations */
2224 inneriter += j_index_end - j_index_start;
2226 /* Outer loop uses 18 flops */
2229 /* Increment number of outer iterations */
2232 /* Update outer/inner flops */
2234 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*347);