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36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
47 #include "gromacs/simd/math_x86_sse2_double.h"
48 #include "kernelutil_x86_sse2_double.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_VF_sse2_double
52 * Electrostatics interaction: Ewald
53 * VdW interaction: LJEwald
54 * Geometry: Water4-Particle
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_VF_sse2_double
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
75 int j_coord_offsetA,j_coord_offsetB;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
81 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
83 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
85 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
87 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
88 int vdwjidx0A,vdwjidx0B;
89 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
91 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
92 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
93 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
94 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
97 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
100 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
101 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
106 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
108 __m128d one_half = _mm_set1_pd(0.5);
109 __m128d minus_one = _mm_set1_pd(-1.0);
111 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
113 __m128d dummy_mask,cutoff_mask;
114 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
115 __m128d one = _mm_set1_pd(1.0);
116 __m128d two = _mm_set1_pd(2.0);
122 jindex = nlist->jindex;
124 shiftidx = nlist->shift;
126 shiftvec = fr->shift_vec[0];
127 fshift = fr->fshift[0];
128 facel = _mm_set1_pd(fr->epsfac);
129 charge = mdatoms->chargeA;
130 nvdwtype = fr->ntype;
132 vdwtype = mdatoms->typeA;
133 vdwgridparam = fr->ljpme_c6grid;
134 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
135 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
136 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
138 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
139 ewtab = fr->ic->tabq_coul_FDV0;
140 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
141 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
143 /* Setup water-specific parameters */
144 inr = nlist->iinr[0];
145 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
146 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
147 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
148 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
150 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
151 rcutoff_scalar = fr->rcoulomb;
152 rcutoff = _mm_set1_pd(rcutoff_scalar);
153 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
155 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
156 rvdw = _mm_set1_pd(fr->rvdw);
158 /* Avoid stupid compiler warnings */
166 /* Start outer loop over neighborlists */
167 for(iidx=0; iidx<nri; iidx++)
169 /* Load shift vector for this list */
170 i_shift_offset = DIM*shiftidx[iidx];
172 /* Load limits for loop over neighbors */
173 j_index_start = jindex[iidx];
174 j_index_end = jindex[iidx+1];
176 /* Get outer coordinate index */
178 i_coord_offset = DIM*inr;
180 /* Load i particle coords and add shift vector */
181 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
182 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
184 fix0 = _mm_setzero_pd();
185 fiy0 = _mm_setzero_pd();
186 fiz0 = _mm_setzero_pd();
187 fix1 = _mm_setzero_pd();
188 fiy1 = _mm_setzero_pd();
189 fiz1 = _mm_setzero_pd();
190 fix2 = _mm_setzero_pd();
191 fiy2 = _mm_setzero_pd();
192 fiz2 = _mm_setzero_pd();
193 fix3 = _mm_setzero_pd();
194 fiy3 = _mm_setzero_pd();
195 fiz3 = _mm_setzero_pd();
197 /* Reset potential sums */
198 velecsum = _mm_setzero_pd();
199 vvdwsum = _mm_setzero_pd();
201 /* Start inner kernel loop */
202 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
205 /* Get j neighbor index, and coordinate index */
208 j_coord_offsetA = DIM*jnrA;
209 j_coord_offsetB = DIM*jnrB;
211 /* load j atom coordinates */
212 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
215 /* Calculate displacement vector */
216 dx00 = _mm_sub_pd(ix0,jx0);
217 dy00 = _mm_sub_pd(iy0,jy0);
218 dz00 = _mm_sub_pd(iz0,jz0);
219 dx10 = _mm_sub_pd(ix1,jx0);
220 dy10 = _mm_sub_pd(iy1,jy0);
221 dz10 = _mm_sub_pd(iz1,jz0);
222 dx20 = _mm_sub_pd(ix2,jx0);
223 dy20 = _mm_sub_pd(iy2,jy0);
224 dz20 = _mm_sub_pd(iz2,jz0);
225 dx30 = _mm_sub_pd(ix3,jx0);
226 dy30 = _mm_sub_pd(iy3,jy0);
227 dz30 = _mm_sub_pd(iz3,jz0);
229 /* Calculate squared distance and things based on it */
230 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
231 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
232 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
233 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
235 rinv00 = gmx_mm_invsqrt_pd(rsq00);
236 rinv10 = gmx_mm_invsqrt_pd(rsq10);
237 rinv20 = gmx_mm_invsqrt_pd(rsq20);
238 rinv30 = gmx_mm_invsqrt_pd(rsq30);
240 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
241 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
242 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
243 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
245 /* Load parameters for j particles */
246 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
247 vdwjidx0A = 2*vdwtype[jnrA+0];
248 vdwjidx0B = 2*vdwtype[jnrB+0];
250 fjx0 = _mm_setzero_pd();
251 fjy0 = _mm_setzero_pd();
252 fjz0 = _mm_setzero_pd();
254 /**************************
255 * CALCULATE INTERACTIONS *
256 **************************/
258 if (gmx_mm_any_lt(rsq00,rcutoff2))
261 r00 = _mm_mul_pd(rsq00,rinv00);
263 /* Compute parameters for interactions between i and j atoms */
264 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
265 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
267 c6grid_00 = gmx_mm_load_2real_swizzle_pd(vdwgridparam+vdwioffset0+vdwjidx0A,
268 vdwgridparam+vdwioffset0+vdwjidx0B);
270 /* Analytical LJ-PME */
271 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
272 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
273 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
274 exponent = gmx_simd_exp_d(ewcljrsq);
275 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
276 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
277 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
278 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
279 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
280 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))),one_twelfth),
281 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_add_pd(_mm_mul_pd(c6_00,sh_vdw_invrcut6),_mm_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
282 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
283 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
285 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
287 /* Update potential sum for this i atom from the interaction with this j atom. */
288 vvdw = _mm_and_pd(vvdw,cutoff_mask);
289 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
293 fscal = _mm_and_pd(fscal,cutoff_mask);
295 /* Calculate temporary vectorial force */
296 tx = _mm_mul_pd(fscal,dx00);
297 ty = _mm_mul_pd(fscal,dy00);
298 tz = _mm_mul_pd(fscal,dz00);
300 /* Update vectorial force */
301 fix0 = _mm_add_pd(fix0,tx);
302 fiy0 = _mm_add_pd(fiy0,ty);
303 fiz0 = _mm_add_pd(fiz0,tz);
305 fjx0 = _mm_add_pd(fjx0,tx);
306 fjy0 = _mm_add_pd(fjy0,ty);
307 fjz0 = _mm_add_pd(fjz0,tz);
311 /**************************
312 * CALCULATE INTERACTIONS *
313 **************************/
315 if (gmx_mm_any_lt(rsq10,rcutoff2))
318 r10 = _mm_mul_pd(rsq10,rinv10);
320 /* Compute parameters for interactions between i and j atoms */
321 qq10 = _mm_mul_pd(iq1,jq0);
323 /* EWALD ELECTROSTATICS */
325 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
326 ewrt = _mm_mul_pd(r10,ewtabscale);
327 ewitab = _mm_cvttpd_epi32(ewrt);
328 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
329 ewitab = _mm_slli_epi32(ewitab,2);
330 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
331 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
332 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
333 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
334 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
335 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
336 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
337 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
338 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_sub_pd(rinv10,sh_ewald),velec));
339 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
341 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
343 /* Update potential sum for this i atom from the interaction with this j atom. */
344 velec = _mm_and_pd(velec,cutoff_mask);
345 velecsum = _mm_add_pd(velecsum,velec);
349 fscal = _mm_and_pd(fscal,cutoff_mask);
351 /* Calculate temporary vectorial force */
352 tx = _mm_mul_pd(fscal,dx10);
353 ty = _mm_mul_pd(fscal,dy10);
354 tz = _mm_mul_pd(fscal,dz10);
356 /* Update vectorial force */
357 fix1 = _mm_add_pd(fix1,tx);
358 fiy1 = _mm_add_pd(fiy1,ty);
359 fiz1 = _mm_add_pd(fiz1,tz);
361 fjx0 = _mm_add_pd(fjx0,tx);
362 fjy0 = _mm_add_pd(fjy0,ty);
363 fjz0 = _mm_add_pd(fjz0,tz);
367 /**************************
368 * CALCULATE INTERACTIONS *
369 **************************/
371 if (gmx_mm_any_lt(rsq20,rcutoff2))
374 r20 = _mm_mul_pd(rsq20,rinv20);
376 /* Compute parameters for interactions between i and j atoms */
377 qq20 = _mm_mul_pd(iq2,jq0);
379 /* EWALD ELECTROSTATICS */
381 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
382 ewrt = _mm_mul_pd(r20,ewtabscale);
383 ewitab = _mm_cvttpd_epi32(ewrt);
384 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
385 ewitab = _mm_slli_epi32(ewitab,2);
386 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
387 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
388 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
389 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
390 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
391 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
392 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
393 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
394 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_sub_pd(rinv20,sh_ewald),velec));
395 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
397 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
399 /* Update potential sum for this i atom from the interaction with this j atom. */
400 velec = _mm_and_pd(velec,cutoff_mask);
401 velecsum = _mm_add_pd(velecsum,velec);
405 fscal = _mm_and_pd(fscal,cutoff_mask);
407 /* Calculate temporary vectorial force */
408 tx = _mm_mul_pd(fscal,dx20);
409 ty = _mm_mul_pd(fscal,dy20);
410 tz = _mm_mul_pd(fscal,dz20);
412 /* Update vectorial force */
413 fix2 = _mm_add_pd(fix2,tx);
414 fiy2 = _mm_add_pd(fiy2,ty);
415 fiz2 = _mm_add_pd(fiz2,tz);
417 fjx0 = _mm_add_pd(fjx0,tx);
418 fjy0 = _mm_add_pd(fjy0,ty);
419 fjz0 = _mm_add_pd(fjz0,tz);
423 /**************************
424 * CALCULATE INTERACTIONS *
425 **************************/
427 if (gmx_mm_any_lt(rsq30,rcutoff2))
430 r30 = _mm_mul_pd(rsq30,rinv30);
432 /* Compute parameters for interactions between i and j atoms */
433 qq30 = _mm_mul_pd(iq3,jq0);
435 /* EWALD ELECTROSTATICS */
437 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
438 ewrt = _mm_mul_pd(r30,ewtabscale);
439 ewitab = _mm_cvttpd_epi32(ewrt);
440 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
441 ewitab = _mm_slli_epi32(ewitab,2);
442 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
443 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
444 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
445 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
446 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
447 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
448 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
449 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
450 velec = _mm_mul_pd(qq30,_mm_sub_pd(_mm_sub_pd(rinv30,sh_ewald),velec));
451 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
453 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
455 /* Update potential sum for this i atom from the interaction with this j atom. */
456 velec = _mm_and_pd(velec,cutoff_mask);
457 velecsum = _mm_add_pd(velecsum,velec);
461 fscal = _mm_and_pd(fscal,cutoff_mask);
463 /* Calculate temporary vectorial force */
464 tx = _mm_mul_pd(fscal,dx30);
465 ty = _mm_mul_pd(fscal,dy30);
466 tz = _mm_mul_pd(fscal,dz30);
468 /* Update vectorial force */
469 fix3 = _mm_add_pd(fix3,tx);
470 fiy3 = _mm_add_pd(fiy3,ty);
471 fiz3 = _mm_add_pd(fiz3,tz);
473 fjx0 = _mm_add_pd(fjx0,tx);
474 fjy0 = _mm_add_pd(fjy0,ty);
475 fjz0 = _mm_add_pd(fjz0,tz);
479 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
481 /* Inner loop uses 203 flops */
488 j_coord_offsetA = DIM*jnrA;
490 /* load j atom coordinates */
491 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
494 /* Calculate displacement vector */
495 dx00 = _mm_sub_pd(ix0,jx0);
496 dy00 = _mm_sub_pd(iy0,jy0);
497 dz00 = _mm_sub_pd(iz0,jz0);
498 dx10 = _mm_sub_pd(ix1,jx0);
499 dy10 = _mm_sub_pd(iy1,jy0);
500 dz10 = _mm_sub_pd(iz1,jz0);
501 dx20 = _mm_sub_pd(ix2,jx0);
502 dy20 = _mm_sub_pd(iy2,jy0);
503 dz20 = _mm_sub_pd(iz2,jz0);
504 dx30 = _mm_sub_pd(ix3,jx0);
505 dy30 = _mm_sub_pd(iy3,jy0);
506 dz30 = _mm_sub_pd(iz3,jz0);
508 /* Calculate squared distance and things based on it */
509 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
510 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
511 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
512 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
514 rinv00 = gmx_mm_invsqrt_pd(rsq00);
515 rinv10 = gmx_mm_invsqrt_pd(rsq10);
516 rinv20 = gmx_mm_invsqrt_pd(rsq20);
517 rinv30 = gmx_mm_invsqrt_pd(rsq30);
519 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
520 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
521 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
522 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
524 /* Load parameters for j particles */
525 jq0 = _mm_load_sd(charge+jnrA+0);
526 vdwjidx0A = 2*vdwtype[jnrA+0];
528 fjx0 = _mm_setzero_pd();
529 fjy0 = _mm_setzero_pd();
530 fjz0 = _mm_setzero_pd();
532 /**************************
533 * CALCULATE INTERACTIONS *
534 **************************/
536 if (gmx_mm_any_lt(rsq00,rcutoff2))
539 r00 = _mm_mul_pd(rsq00,rinv00);
541 /* Compute parameters for interactions between i and j atoms */
542 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
544 c6grid_00 = gmx_mm_load_1real_pd(vdwgridparam+vdwioffset0+vdwjidx0A);
546 /* Analytical LJ-PME */
547 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
548 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
549 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
550 exponent = gmx_simd_exp_d(ewcljrsq);
551 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
552 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
553 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
554 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
555 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
556 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))),one_twelfth),
557 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_add_pd(_mm_mul_pd(c6_00,sh_vdw_invrcut6),_mm_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
558 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
559 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
561 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
563 /* Update potential sum for this i atom from the interaction with this j atom. */
564 vvdw = _mm_and_pd(vvdw,cutoff_mask);
565 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
566 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
570 fscal = _mm_and_pd(fscal,cutoff_mask);
572 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
574 /* Calculate temporary vectorial force */
575 tx = _mm_mul_pd(fscal,dx00);
576 ty = _mm_mul_pd(fscal,dy00);
577 tz = _mm_mul_pd(fscal,dz00);
579 /* Update vectorial force */
580 fix0 = _mm_add_pd(fix0,tx);
581 fiy0 = _mm_add_pd(fiy0,ty);
582 fiz0 = _mm_add_pd(fiz0,tz);
584 fjx0 = _mm_add_pd(fjx0,tx);
585 fjy0 = _mm_add_pd(fjy0,ty);
586 fjz0 = _mm_add_pd(fjz0,tz);
590 /**************************
591 * CALCULATE INTERACTIONS *
592 **************************/
594 if (gmx_mm_any_lt(rsq10,rcutoff2))
597 r10 = _mm_mul_pd(rsq10,rinv10);
599 /* Compute parameters for interactions between i and j atoms */
600 qq10 = _mm_mul_pd(iq1,jq0);
602 /* EWALD ELECTROSTATICS */
604 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
605 ewrt = _mm_mul_pd(r10,ewtabscale);
606 ewitab = _mm_cvttpd_epi32(ewrt);
607 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
608 ewitab = _mm_slli_epi32(ewitab,2);
609 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
610 ewtabD = _mm_setzero_pd();
611 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
612 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
613 ewtabFn = _mm_setzero_pd();
614 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
615 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
616 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
617 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_sub_pd(rinv10,sh_ewald),velec));
618 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
620 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
622 /* Update potential sum for this i atom from the interaction with this j atom. */
623 velec = _mm_and_pd(velec,cutoff_mask);
624 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
625 velecsum = _mm_add_pd(velecsum,velec);
629 fscal = _mm_and_pd(fscal,cutoff_mask);
631 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
633 /* Calculate temporary vectorial force */
634 tx = _mm_mul_pd(fscal,dx10);
635 ty = _mm_mul_pd(fscal,dy10);
636 tz = _mm_mul_pd(fscal,dz10);
638 /* Update vectorial force */
639 fix1 = _mm_add_pd(fix1,tx);
640 fiy1 = _mm_add_pd(fiy1,ty);
641 fiz1 = _mm_add_pd(fiz1,tz);
643 fjx0 = _mm_add_pd(fjx0,tx);
644 fjy0 = _mm_add_pd(fjy0,ty);
645 fjz0 = _mm_add_pd(fjz0,tz);
649 /**************************
650 * CALCULATE INTERACTIONS *
651 **************************/
653 if (gmx_mm_any_lt(rsq20,rcutoff2))
656 r20 = _mm_mul_pd(rsq20,rinv20);
658 /* Compute parameters for interactions between i and j atoms */
659 qq20 = _mm_mul_pd(iq2,jq0);
661 /* EWALD ELECTROSTATICS */
663 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
664 ewrt = _mm_mul_pd(r20,ewtabscale);
665 ewitab = _mm_cvttpd_epi32(ewrt);
666 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
667 ewitab = _mm_slli_epi32(ewitab,2);
668 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
669 ewtabD = _mm_setzero_pd();
670 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
671 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
672 ewtabFn = _mm_setzero_pd();
673 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
674 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
675 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
676 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_sub_pd(rinv20,sh_ewald),velec));
677 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
679 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
681 /* Update potential sum for this i atom from the interaction with this j atom. */
682 velec = _mm_and_pd(velec,cutoff_mask);
683 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
684 velecsum = _mm_add_pd(velecsum,velec);
688 fscal = _mm_and_pd(fscal,cutoff_mask);
690 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
692 /* Calculate temporary vectorial force */
693 tx = _mm_mul_pd(fscal,dx20);
694 ty = _mm_mul_pd(fscal,dy20);
695 tz = _mm_mul_pd(fscal,dz20);
697 /* Update vectorial force */
698 fix2 = _mm_add_pd(fix2,tx);
699 fiy2 = _mm_add_pd(fiy2,ty);
700 fiz2 = _mm_add_pd(fiz2,tz);
702 fjx0 = _mm_add_pd(fjx0,tx);
703 fjy0 = _mm_add_pd(fjy0,ty);
704 fjz0 = _mm_add_pd(fjz0,tz);
708 /**************************
709 * CALCULATE INTERACTIONS *
710 **************************/
712 if (gmx_mm_any_lt(rsq30,rcutoff2))
715 r30 = _mm_mul_pd(rsq30,rinv30);
717 /* Compute parameters for interactions between i and j atoms */
718 qq30 = _mm_mul_pd(iq3,jq0);
720 /* EWALD ELECTROSTATICS */
722 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
723 ewrt = _mm_mul_pd(r30,ewtabscale);
724 ewitab = _mm_cvttpd_epi32(ewrt);
725 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
726 ewitab = _mm_slli_epi32(ewitab,2);
727 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
728 ewtabD = _mm_setzero_pd();
729 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
730 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
731 ewtabFn = _mm_setzero_pd();
732 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
733 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
734 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
735 velec = _mm_mul_pd(qq30,_mm_sub_pd(_mm_sub_pd(rinv30,sh_ewald),velec));
736 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
738 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
740 /* Update potential sum for this i atom from the interaction with this j atom. */
741 velec = _mm_and_pd(velec,cutoff_mask);
742 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
743 velecsum = _mm_add_pd(velecsum,velec);
747 fscal = _mm_and_pd(fscal,cutoff_mask);
749 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
751 /* Calculate temporary vectorial force */
752 tx = _mm_mul_pd(fscal,dx30);
753 ty = _mm_mul_pd(fscal,dy30);
754 tz = _mm_mul_pd(fscal,dz30);
756 /* Update vectorial force */
757 fix3 = _mm_add_pd(fix3,tx);
758 fiy3 = _mm_add_pd(fiy3,ty);
759 fiz3 = _mm_add_pd(fiz3,tz);
761 fjx0 = _mm_add_pd(fjx0,tx);
762 fjy0 = _mm_add_pd(fjy0,ty);
763 fjz0 = _mm_add_pd(fjz0,tz);
767 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
769 /* Inner loop uses 203 flops */
772 /* End of innermost loop */
774 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
775 f+i_coord_offset,fshift+i_shift_offset);
778 /* Update potential energies */
779 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
780 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
782 /* Increment number of inner iterations */
783 inneriter += j_index_end - j_index_start;
785 /* Outer loop uses 26 flops */
788 /* Increment number of outer iterations */
791 /* Update outer/inner flops */
793 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*203);
796 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_F_sse2_double
797 * Electrostatics interaction: Ewald
798 * VdW interaction: LJEwald
799 * Geometry: Water4-Particle
800 * Calculate force/pot: Force
803 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_F_sse2_double
804 (t_nblist * gmx_restrict nlist,
805 rvec * gmx_restrict xx,
806 rvec * gmx_restrict ff,
807 t_forcerec * gmx_restrict fr,
808 t_mdatoms * gmx_restrict mdatoms,
809 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
810 t_nrnb * gmx_restrict nrnb)
812 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
813 * just 0 for non-waters.
814 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
815 * jnr indices corresponding to data put in the four positions in the SIMD register.
817 int i_shift_offset,i_coord_offset,outeriter,inneriter;
818 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
820 int j_coord_offsetA,j_coord_offsetB;
821 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
823 real *shiftvec,*fshift,*x,*f;
824 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
826 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
828 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
830 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
832 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
833 int vdwjidx0A,vdwjidx0B;
834 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
835 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
836 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
837 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
838 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
839 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
842 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
845 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
846 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
851 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
853 __m128d one_half = _mm_set1_pd(0.5);
854 __m128d minus_one = _mm_set1_pd(-1.0);
856 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
858 __m128d dummy_mask,cutoff_mask;
859 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
860 __m128d one = _mm_set1_pd(1.0);
861 __m128d two = _mm_set1_pd(2.0);
867 jindex = nlist->jindex;
869 shiftidx = nlist->shift;
871 shiftvec = fr->shift_vec[0];
872 fshift = fr->fshift[0];
873 facel = _mm_set1_pd(fr->epsfac);
874 charge = mdatoms->chargeA;
875 nvdwtype = fr->ntype;
877 vdwtype = mdatoms->typeA;
878 vdwgridparam = fr->ljpme_c6grid;
879 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
880 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
881 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
883 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
884 ewtab = fr->ic->tabq_coul_F;
885 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
886 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
888 /* Setup water-specific parameters */
889 inr = nlist->iinr[0];
890 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
891 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
892 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
893 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
895 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
896 rcutoff_scalar = fr->rcoulomb;
897 rcutoff = _mm_set1_pd(rcutoff_scalar);
898 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
900 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
901 rvdw = _mm_set1_pd(fr->rvdw);
903 /* Avoid stupid compiler warnings */
911 /* Start outer loop over neighborlists */
912 for(iidx=0; iidx<nri; iidx++)
914 /* Load shift vector for this list */
915 i_shift_offset = DIM*shiftidx[iidx];
917 /* Load limits for loop over neighbors */
918 j_index_start = jindex[iidx];
919 j_index_end = jindex[iidx+1];
921 /* Get outer coordinate index */
923 i_coord_offset = DIM*inr;
925 /* Load i particle coords and add shift vector */
926 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
927 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
929 fix0 = _mm_setzero_pd();
930 fiy0 = _mm_setzero_pd();
931 fiz0 = _mm_setzero_pd();
932 fix1 = _mm_setzero_pd();
933 fiy1 = _mm_setzero_pd();
934 fiz1 = _mm_setzero_pd();
935 fix2 = _mm_setzero_pd();
936 fiy2 = _mm_setzero_pd();
937 fiz2 = _mm_setzero_pd();
938 fix3 = _mm_setzero_pd();
939 fiy3 = _mm_setzero_pd();
940 fiz3 = _mm_setzero_pd();
942 /* Start inner kernel loop */
943 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
946 /* Get j neighbor index, and coordinate index */
949 j_coord_offsetA = DIM*jnrA;
950 j_coord_offsetB = DIM*jnrB;
952 /* load j atom coordinates */
953 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
956 /* Calculate displacement vector */
957 dx00 = _mm_sub_pd(ix0,jx0);
958 dy00 = _mm_sub_pd(iy0,jy0);
959 dz00 = _mm_sub_pd(iz0,jz0);
960 dx10 = _mm_sub_pd(ix1,jx0);
961 dy10 = _mm_sub_pd(iy1,jy0);
962 dz10 = _mm_sub_pd(iz1,jz0);
963 dx20 = _mm_sub_pd(ix2,jx0);
964 dy20 = _mm_sub_pd(iy2,jy0);
965 dz20 = _mm_sub_pd(iz2,jz0);
966 dx30 = _mm_sub_pd(ix3,jx0);
967 dy30 = _mm_sub_pd(iy3,jy0);
968 dz30 = _mm_sub_pd(iz3,jz0);
970 /* Calculate squared distance and things based on it */
971 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
972 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
973 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
974 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
976 rinv00 = gmx_mm_invsqrt_pd(rsq00);
977 rinv10 = gmx_mm_invsqrt_pd(rsq10);
978 rinv20 = gmx_mm_invsqrt_pd(rsq20);
979 rinv30 = gmx_mm_invsqrt_pd(rsq30);
981 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
982 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
983 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
984 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
986 /* Load parameters for j particles */
987 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
988 vdwjidx0A = 2*vdwtype[jnrA+0];
989 vdwjidx0B = 2*vdwtype[jnrB+0];
991 fjx0 = _mm_setzero_pd();
992 fjy0 = _mm_setzero_pd();
993 fjz0 = _mm_setzero_pd();
995 /**************************
996 * CALCULATE INTERACTIONS *
997 **************************/
999 if (gmx_mm_any_lt(rsq00,rcutoff2))
1002 r00 = _mm_mul_pd(rsq00,rinv00);
1004 /* Compute parameters for interactions between i and j atoms */
1005 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
1006 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
1008 c6grid_00 = gmx_mm_load_2real_swizzle_pd(vdwgridparam+vdwioffset0+vdwjidx0A,
1009 vdwgridparam+vdwioffset0+vdwjidx0B);
1011 /* Analytical LJ-PME */
1012 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1013 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1014 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1015 exponent = gmx_simd_exp_d(ewcljrsq);
1016 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1017 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1018 /* f6A = 6 * C6grid * (1 - poly) */
1019 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1020 /* f6B = C6grid * exponent * beta^6 */
1021 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1022 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1023 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1025 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1029 fscal = _mm_and_pd(fscal,cutoff_mask);
1031 /* Calculate temporary vectorial force */
1032 tx = _mm_mul_pd(fscal,dx00);
1033 ty = _mm_mul_pd(fscal,dy00);
1034 tz = _mm_mul_pd(fscal,dz00);
1036 /* Update vectorial force */
1037 fix0 = _mm_add_pd(fix0,tx);
1038 fiy0 = _mm_add_pd(fiy0,ty);
1039 fiz0 = _mm_add_pd(fiz0,tz);
1041 fjx0 = _mm_add_pd(fjx0,tx);
1042 fjy0 = _mm_add_pd(fjy0,ty);
1043 fjz0 = _mm_add_pd(fjz0,tz);
1047 /**************************
1048 * CALCULATE INTERACTIONS *
1049 **************************/
1051 if (gmx_mm_any_lt(rsq10,rcutoff2))
1054 r10 = _mm_mul_pd(rsq10,rinv10);
1056 /* Compute parameters for interactions between i and j atoms */
1057 qq10 = _mm_mul_pd(iq1,jq0);
1059 /* EWALD ELECTROSTATICS */
1061 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1062 ewrt = _mm_mul_pd(r10,ewtabscale);
1063 ewitab = _mm_cvttpd_epi32(ewrt);
1064 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1065 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1067 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1068 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1070 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1074 fscal = _mm_and_pd(fscal,cutoff_mask);
1076 /* Calculate temporary vectorial force */
1077 tx = _mm_mul_pd(fscal,dx10);
1078 ty = _mm_mul_pd(fscal,dy10);
1079 tz = _mm_mul_pd(fscal,dz10);
1081 /* Update vectorial force */
1082 fix1 = _mm_add_pd(fix1,tx);
1083 fiy1 = _mm_add_pd(fiy1,ty);
1084 fiz1 = _mm_add_pd(fiz1,tz);
1086 fjx0 = _mm_add_pd(fjx0,tx);
1087 fjy0 = _mm_add_pd(fjy0,ty);
1088 fjz0 = _mm_add_pd(fjz0,tz);
1092 /**************************
1093 * CALCULATE INTERACTIONS *
1094 **************************/
1096 if (gmx_mm_any_lt(rsq20,rcutoff2))
1099 r20 = _mm_mul_pd(rsq20,rinv20);
1101 /* Compute parameters for interactions between i and j atoms */
1102 qq20 = _mm_mul_pd(iq2,jq0);
1104 /* EWALD ELECTROSTATICS */
1106 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1107 ewrt = _mm_mul_pd(r20,ewtabscale);
1108 ewitab = _mm_cvttpd_epi32(ewrt);
1109 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1110 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1112 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1113 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1115 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1119 fscal = _mm_and_pd(fscal,cutoff_mask);
1121 /* Calculate temporary vectorial force */
1122 tx = _mm_mul_pd(fscal,dx20);
1123 ty = _mm_mul_pd(fscal,dy20);
1124 tz = _mm_mul_pd(fscal,dz20);
1126 /* Update vectorial force */
1127 fix2 = _mm_add_pd(fix2,tx);
1128 fiy2 = _mm_add_pd(fiy2,ty);
1129 fiz2 = _mm_add_pd(fiz2,tz);
1131 fjx0 = _mm_add_pd(fjx0,tx);
1132 fjy0 = _mm_add_pd(fjy0,ty);
1133 fjz0 = _mm_add_pd(fjz0,tz);
1137 /**************************
1138 * CALCULATE INTERACTIONS *
1139 **************************/
1141 if (gmx_mm_any_lt(rsq30,rcutoff2))
1144 r30 = _mm_mul_pd(rsq30,rinv30);
1146 /* Compute parameters for interactions between i and j atoms */
1147 qq30 = _mm_mul_pd(iq3,jq0);
1149 /* EWALD ELECTROSTATICS */
1151 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1152 ewrt = _mm_mul_pd(r30,ewtabscale);
1153 ewitab = _mm_cvttpd_epi32(ewrt);
1154 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1155 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1157 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1158 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
1160 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
1164 fscal = _mm_and_pd(fscal,cutoff_mask);
1166 /* Calculate temporary vectorial force */
1167 tx = _mm_mul_pd(fscal,dx30);
1168 ty = _mm_mul_pd(fscal,dy30);
1169 tz = _mm_mul_pd(fscal,dz30);
1171 /* Update vectorial force */
1172 fix3 = _mm_add_pd(fix3,tx);
1173 fiy3 = _mm_add_pd(fiy3,ty);
1174 fiz3 = _mm_add_pd(fiz3,tz);
1176 fjx0 = _mm_add_pd(fjx0,tx);
1177 fjy0 = _mm_add_pd(fjy0,ty);
1178 fjz0 = _mm_add_pd(fjz0,tz);
1182 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
1184 /* Inner loop uses 169 flops */
1187 if(jidx<j_index_end)
1191 j_coord_offsetA = DIM*jnrA;
1193 /* load j atom coordinates */
1194 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1197 /* Calculate displacement vector */
1198 dx00 = _mm_sub_pd(ix0,jx0);
1199 dy00 = _mm_sub_pd(iy0,jy0);
1200 dz00 = _mm_sub_pd(iz0,jz0);
1201 dx10 = _mm_sub_pd(ix1,jx0);
1202 dy10 = _mm_sub_pd(iy1,jy0);
1203 dz10 = _mm_sub_pd(iz1,jz0);
1204 dx20 = _mm_sub_pd(ix2,jx0);
1205 dy20 = _mm_sub_pd(iy2,jy0);
1206 dz20 = _mm_sub_pd(iz2,jz0);
1207 dx30 = _mm_sub_pd(ix3,jx0);
1208 dy30 = _mm_sub_pd(iy3,jy0);
1209 dz30 = _mm_sub_pd(iz3,jz0);
1211 /* Calculate squared distance and things based on it */
1212 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1213 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1214 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1215 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
1217 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1218 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1219 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1220 rinv30 = gmx_mm_invsqrt_pd(rsq30);
1222 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1223 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1224 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1225 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
1227 /* Load parameters for j particles */
1228 jq0 = _mm_load_sd(charge+jnrA+0);
1229 vdwjidx0A = 2*vdwtype[jnrA+0];
1231 fjx0 = _mm_setzero_pd();
1232 fjy0 = _mm_setzero_pd();
1233 fjz0 = _mm_setzero_pd();
1235 /**************************
1236 * CALCULATE INTERACTIONS *
1237 **************************/
1239 if (gmx_mm_any_lt(rsq00,rcutoff2))
1242 r00 = _mm_mul_pd(rsq00,rinv00);
1244 /* Compute parameters for interactions between i and j atoms */
1245 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
1247 c6grid_00 = gmx_mm_load_1real_pd(vdwgridparam+vdwioffset0+vdwjidx0A);
1249 /* Analytical LJ-PME */
1250 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1251 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1252 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1253 exponent = gmx_simd_exp_d(ewcljrsq);
1254 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1255 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1256 /* f6A = 6 * C6grid * (1 - poly) */
1257 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1258 /* f6B = C6grid * exponent * beta^6 */
1259 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1260 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1261 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1263 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1267 fscal = _mm_and_pd(fscal,cutoff_mask);
1269 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1271 /* Calculate temporary vectorial force */
1272 tx = _mm_mul_pd(fscal,dx00);
1273 ty = _mm_mul_pd(fscal,dy00);
1274 tz = _mm_mul_pd(fscal,dz00);
1276 /* Update vectorial force */
1277 fix0 = _mm_add_pd(fix0,tx);
1278 fiy0 = _mm_add_pd(fiy0,ty);
1279 fiz0 = _mm_add_pd(fiz0,tz);
1281 fjx0 = _mm_add_pd(fjx0,tx);
1282 fjy0 = _mm_add_pd(fjy0,ty);
1283 fjz0 = _mm_add_pd(fjz0,tz);
1287 /**************************
1288 * CALCULATE INTERACTIONS *
1289 **************************/
1291 if (gmx_mm_any_lt(rsq10,rcutoff2))
1294 r10 = _mm_mul_pd(rsq10,rinv10);
1296 /* Compute parameters for interactions between i and j atoms */
1297 qq10 = _mm_mul_pd(iq1,jq0);
1299 /* EWALD ELECTROSTATICS */
1301 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1302 ewrt = _mm_mul_pd(r10,ewtabscale);
1303 ewitab = _mm_cvttpd_epi32(ewrt);
1304 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1305 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1306 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1307 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1309 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1313 fscal = _mm_and_pd(fscal,cutoff_mask);
1315 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1317 /* Calculate temporary vectorial force */
1318 tx = _mm_mul_pd(fscal,dx10);
1319 ty = _mm_mul_pd(fscal,dy10);
1320 tz = _mm_mul_pd(fscal,dz10);
1322 /* Update vectorial force */
1323 fix1 = _mm_add_pd(fix1,tx);
1324 fiy1 = _mm_add_pd(fiy1,ty);
1325 fiz1 = _mm_add_pd(fiz1,tz);
1327 fjx0 = _mm_add_pd(fjx0,tx);
1328 fjy0 = _mm_add_pd(fjy0,ty);
1329 fjz0 = _mm_add_pd(fjz0,tz);
1333 /**************************
1334 * CALCULATE INTERACTIONS *
1335 **************************/
1337 if (gmx_mm_any_lt(rsq20,rcutoff2))
1340 r20 = _mm_mul_pd(rsq20,rinv20);
1342 /* Compute parameters for interactions between i and j atoms */
1343 qq20 = _mm_mul_pd(iq2,jq0);
1345 /* EWALD ELECTROSTATICS */
1347 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1348 ewrt = _mm_mul_pd(r20,ewtabscale);
1349 ewitab = _mm_cvttpd_epi32(ewrt);
1350 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1351 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1352 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1353 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1355 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1359 fscal = _mm_and_pd(fscal,cutoff_mask);
1361 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1363 /* Calculate temporary vectorial force */
1364 tx = _mm_mul_pd(fscal,dx20);
1365 ty = _mm_mul_pd(fscal,dy20);
1366 tz = _mm_mul_pd(fscal,dz20);
1368 /* Update vectorial force */
1369 fix2 = _mm_add_pd(fix2,tx);
1370 fiy2 = _mm_add_pd(fiy2,ty);
1371 fiz2 = _mm_add_pd(fiz2,tz);
1373 fjx0 = _mm_add_pd(fjx0,tx);
1374 fjy0 = _mm_add_pd(fjy0,ty);
1375 fjz0 = _mm_add_pd(fjz0,tz);
1379 /**************************
1380 * CALCULATE INTERACTIONS *
1381 **************************/
1383 if (gmx_mm_any_lt(rsq30,rcutoff2))
1386 r30 = _mm_mul_pd(rsq30,rinv30);
1388 /* Compute parameters for interactions between i and j atoms */
1389 qq30 = _mm_mul_pd(iq3,jq0);
1391 /* EWALD ELECTROSTATICS */
1393 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1394 ewrt = _mm_mul_pd(r30,ewtabscale);
1395 ewitab = _mm_cvttpd_epi32(ewrt);
1396 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1397 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1398 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1399 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
1401 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
1405 fscal = _mm_and_pd(fscal,cutoff_mask);
1407 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1409 /* Calculate temporary vectorial force */
1410 tx = _mm_mul_pd(fscal,dx30);
1411 ty = _mm_mul_pd(fscal,dy30);
1412 tz = _mm_mul_pd(fscal,dz30);
1414 /* Update vectorial force */
1415 fix3 = _mm_add_pd(fix3,tx);
1416 fiy3 = _mm_add_pd(fiy3,ty);
1417 fiz3 = _mm_add_pd(fiz3,tz);
1419 fjx0 = _mm_add_pd(fjx0,tx);
1420 fjy0 = _mm_add_pd(fjy0,ty);
1421 fjz0 = _mm_add_pd(fjz0,tz);
1425 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1427 /* Inner loop uses 169 flops */
1430 /* End of innermost loop */
1432 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1433 f+i_coord_offset,fshift+i_shift_offset);
1435 /* Increment number of inner iterations */
1436 inneriter += j_index_end - j_index_start;
1438 /* Outer loop uses 24 flops */
1441 /* Increment number of outer iterations */
1444 /* Update outer/inner flops */
1446 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*169);