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36 * Note: this file was generated by the GROMACS sse2_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
49 #include "gromacs/simd/math_x86_sse2_double.h"
50 #include "kernelutil_x86_sse2_double.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_VF_sse2_double
54 * Electrostatics interaction: Ewald
55 * VdW interaction: LJEwald
56 * Geometry: Water4-Particle
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_VF_sse2_double
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
77 int j_coord_offsetA,j_coord_offsetB;
78 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
80 real *shiftvec,*fshift,*x,*f;
81 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
89 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
90 int vdwjidx0A,vdwjidx0B;
91 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
92 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
93 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
94 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
95 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
96 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
99 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
102 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
103 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
108 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
110 __m128d one_half = _mm_set1_pd(0.5);
111 __m128d minus_one = _mm_set1_pd(-1.0);
113 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
115 __m128d dummy_mask,cutoff_mask;
116 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
117 __m128d one = _mm_set1_pd(1.0);
118 __m128d two = _mm_set1_pd(2.0);
124 jindex = nlist->jindex;
126 shiftidx = nlist->shift;
128 shiftvec = fr->shift_vec[0];
129 fshift = fr->fshift[0];
130 facel = _mm_set1_pd(fr->epsfac);
131 charge = mdatoms->chargeA;
132 nvdwtype = fr->ntype;
134 vdwtype = mdatoms->typeA;
135 vdwgridparam = fr->ljpme_c6grid;
136 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
137 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
138 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
140 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
141 ewtab = fr->ic->tabq_coul_FDV0;
142 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
143 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
145 /* Setup water-specific parameters */
146 inr = nlist->iinr[0];
147 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
148 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
149 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
150 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
152 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
153 rcutoff_scalar = fr->rcoulomb;
154 rcutoff = _mm_set1_pd(rcutoff_scalar);
155 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
157 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
158 rvdw = _mm_set1_pd(fr->rvdw);
160 /* Avoid stupid compiler warnings */
168 /* Start outer loop over neighborlists */
169 for(iidx=0; iidx<nri; iidx++)
171 /* Load shift vector for this list */
172 i_shift_offset = DIM*shiftidx[iidx];
174 /* Load limits for loop over neighbors */
175 j_index_start = jindex[iidx];
176 j_index_end = jindex[iidx+1];
178 /* Get outer coordinate index */
180 i_coord_offset = DIM*inr;
182 /* Load i particle coords and add shift vector */
183 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
184 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
186 fix0 = _mm_setzero_pd();
187 fiy0 = _mm_setzero_pd();
188 fiz0 = _mm_setzero_pd();
189 fix1 = _mm_setzero_pd();
190 fiy1 = _mm_setzero_pd();
191 fiz1 = _mm_setzero_pd();
192 fix2 = _mm_setzero_pd();
193 fiy2 = _mm_setzero_pd();
194 fiz2 = _mm_setzero_pd();
195 fix3 = _mm_setzero_pd();
196 fiy3 = _mm_setzero_pd();
197 fiz3 = _mm_setzero_pd();
199 /* Reset potential sums */
200 velecsum = _mm_setzero_pd();
201 vvdwsum = _mm_setzero_pd();
203 /* Start inner kernel loop */
204 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
207 /* Get j neighbor index, and coordinate index */
210 j_coord_offsetA = DIM*jnrA;
211 j_coord_offsetB = DIM*jnrB;
213 /* load j atom coordinates */
214 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
217 /* Calculate displacement vector */
218 dx00 = _mm_sub_pd(ix0,jx0);
219 dy00 = _mm_sub_pd(iy0,jy0);
220 dz00 = _mm_sub_pd(iz0,jz0);
221 dx10 = _mm_sub_pd(ix1,jx0);
222 dy10 = _mm_sub_pd(iy1,jy0);
223 dz10 = _mm_sub_pd(iz1,jz0);
224 dx20 = _mm_sub_pd(ix2,jx0);
225 dy20 = _mm_sub_pd(iy2,jy0);
226 dz20 = _mm_sub_pd(iz2,jz0);
227 dx30 = _mm_sub_pd(ix3,jx0);
228 dy30 = _mm_sub_pd(iy3,jy0);
229 dz30 = _mm_sub_pd(iz3,jz0);
231 /* Calculate squared distance and things based on it */
232 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
233 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
234 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
235 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
237 rinv00 = gmx_mm_invsqrt_pd(rsq00);
238 rinv10 = gmx_mm_invsqrt_pd(rsq10);
239 rinv20 = gmx_mm_invsqrt_pd(rsq20);
240 rinv30 = gmx_mm_invsqrt_pd(rsq30);
242 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
243 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
244 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
245 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
247 /* Load parameters for j particles */
248 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
249 vdwjidx0A = 2*vdwtype[jnrA+0];
250 vdwjidx0B = 2*vdwtype[jnrB+0];
252 fjx0 = _mm_setzero_pd();
253 fjy0 = _mm_setzero_pd();
254 fjz0 = _mm_setzero_pd();
256 /**************************
257 * CALCULATE INTERACTIONS *
258 **************************/
260 if (gmx_mm_any_lt(rsq00,rcutoff2))
263 r00 = _mm_mul_pd(rsq00,rinv00);
265 /* Compute parameters for interactions between i and j atoms */
266 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
267 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
269 c6grid_00 = gmx_mm_load_2real_swizzle_pd(vdwgridparam+vdwioffset0+vdwjidx0A,
270 vdwgridparam+vdwioffset0+vdwjidx0B);
272 /* Analytical LJ-PME */
273 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
274 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
275 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
276 exponent = gmx_simd_exp_d(ewcljrsq);
277 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
278 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
279 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
280 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
281 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
282 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))),one_twelfth),
283 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_add_pd(_mm_mul_pd(c6_00,sh_vdw_invrcut6),_mm_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
284 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
285 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
287 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
289 /* Update potential sum for this i atom from the interaction with this j atom. */
290 vvdw = _mm_and_pd(vvdw,cutoff_mask);
291 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
295 fscal = _mm_and_pd(fscal,cutoff_mask);
297 /* Calculate temporary vectorial force */
298 tx = _mm_mul_pd(fscal,dx00);
299 ty = _mm_mul_pd(fscal,dy00);
300 tz = _mm_mul_pd(fscal,dz00);
302 /* Update vectorial force */
303 fix0 = _mm_add_pd(fix0,tx);
304 fiy0 = _mm_add_pd(fiy0,ty);
305 fiz0 = _mm_add_pd(fiz0,tz);
307 fjx0 = _mm_add_pd(fjx0,tx);
308 fjy0 = _mm_add_pd(fjy0,ty);
309 fjz0 = _mm_add_pd(fjz0,tz);
313 /**************************
314 * CALCULATE INTERACTIONS *
315 **************************/
317 if (gmx_mm_any_lt(rsq10,rcutoff2))
320 r10 = _mm_mul_pd(rsq10,rinv10);
322 /* Compute parameters for interactions between i and j atoms */
323 qq10 = _mm_mul_pd(iq1,jq0);
325 /* EWALD ELECTROSTATICS */
327 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
328 ewrt = _mm_mul_pd(r10,ewtabscale);
329 ewitab = _mm_cvttpd_epi32(ewrt);
330 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
331 ewitab = _mm_slli_epi32(ewitab,2);
332 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
333 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
334 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
335 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
336 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
337 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
338 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
339 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
340 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_sub_pd(rinv10,sh_ewald),velec));
341 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
343 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
345 /* Update potential sum for this i atom from the interaction with this j atom. */
346 velec = _mm_and_pd(velec,cutoff_mask);
347 velecsum = _mm_add_pd(velecsum,velec);
351 fscal = _mm_and_pd(fscal,cutoff_mask);
353 /* Calculate temporary vectorial force */
354 tx = _mm_mul_pd(fscal,dx10);
355 ty = _mm_mul_pd(fscal,dy10);
356 tz = _mm_mul_pd(fscal,dz10);
358 /* Update vectorial force */
359 fix1 = _mm_add_pd(fix1,tx);
360 fiy1 = _mm_add_pd(fiy1,ty);
361 fiz1 = _mm_add_pd(fiz1,tz);
363 fjx0 = _mm_add_pd(fjx0,tx);
364 fjy0 = _mm_add_pd(fjy0,ty);
365 fjz0 = _mm_add_pd(fjz0,tz);
369 /**************************
370 * CALCULATE INTERACTIONS *
371 **************************/
373 if (gmx_mm_any_lt(rsq20,rcutoff2))
376 r20 = _mm_mul_pd(rsq20,rinv20);
378 /* Compute parameters for interactions between i and j atoms */
379 qq20 = _mm_mul_pd(iq2,jq0);
381 /* EWALD ELECTROSTATICS */
383 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
384 ewrt = _mm_mul_pd(r20,ewtabscale);
385 ewitab = _mm_cvttpd_epi32(ewrt);
386 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
387 ewitab = _mm_slli_epi32(ewitab,2);
388 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
389 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
390 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
391 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
392 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
393 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
394 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
395 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
396 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_sub_pd(rinv20,sh_ewald),velec));
397 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
399 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
401 /* Update potential sum for this i atom from the interaction with this j atom. */
402 velec = _mm_and_pd(velec,cutoff_mask);
403 velecsum = _mm_add_pd(velecsum,velec);
407 fscal = _mm_and_pd(fscal,cutoff_mask);
409 /* Calculate temporary vectorial force */
410 tx = _mm_mul_pd(fscal,dx20);
411 ty = _mm_mul_pd(fscal,dy20);
412 tz = _mm_mul_pd(fscal,dz20);
414 /* Update vectorial force */
415 fix2 = _mm_add_pd(fix2,tx);
416 fiy2 = _mm_add_pd(fiy2,ty);
417 fiz2 = _mm_add_pd(fiz2,tz);
419 fjx0 = _mm_add_pd(fjx0,tx);
420 fjy0 = _mm_add_pd(fjy0,ty);
421 fjz0 = _mm_add_pd(fjz0,tz);
425 /**************************
426 * CALCULATE INTERACTIONS *
427 **************************/
429 if (gmx_mm_any_lt(rsq30,rcutoff2))
432 r30 = _mm_mul_pd(rsq30,rinv30);
434 /* Compute parameters for interactions between i and j atoms */
435 qq30 = _mm_mul_pd(iq3,jq0);
437 /* EWALD ELECTROSTATICS */
439 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
440 ewrt = _mm_mul_pd(r30,ewtabscale);
441 ewitab = _mm_cvttpd_epi32(ewrt);
442 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
443 ewitab = _mm_slli_epi32(ewitab,2);
444 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
445 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
446 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
447 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
448 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
449 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
450 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
451 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
452 velec = _mm_mul_pd(qq30,_mm_sub_pd(_mm_sub_pd(rinv30,sh_ewald),velec));
453 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
455 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
457 /* Update potential sum for this i atom from the interaction with this j atom. */
458 velec = _mm_and_pd(velec,cutoff_mask);
459 velecsum = _mm_add_pd(velecsum,velec);
463 fscal = _mm_and_pd(fscal,cutoff_mask);
465 /* Calculate temporary vectorial force */
466 tx = _mm_mul_pd(fscal,dx30);
467 ty = _mm_mul_pd(fscal,dy30);
468 tz = _mm_mul_pd(fscal,dz30);
470 /* Update vectorial force */
471 fix3 = _mm_add_pd(fix3,tx);
472 fiy3 = _mm_add_pd(fiy3,ty);
473 fiz3 = _mm_add_pd(fiz3,tz);
475 fjx0 = _mm_add_pd(fjx0,tx);
476 fjy0 = _mm_add_pd(fjy0,ty);
477 fjz0 = _mm_add_pd(fjz0,tz);
481 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
483 /* Inner loop uses 203 flops */
490 j_coord_offsetA = DIM*jnrA;
492 /* load j atom coordinates */
493 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
496 /* Calculate displacement vector */
497 dx00 = _mm_sub_pd(ix0,jx0);
498 dy00 = _mm_sub_pd(iy0,jy0);
499 dz00 = _mm_sub_pd(iz0,jz0);
500 dx10 = _mm_sub_pd(ix1,jx0);
501 dy10 = _mm_sub_pd(iy1,jy0);
502 dz10 = _mm_sub_pd(iz1,jz0);
503 dx20 = _mm_sub_pd(ix2,jx0);
504 dy20 = _mm_sub_pd(iy2,jy0);
505 dz20 = _mm_sub_pd(iz2,jz0);
506 dx30 = _mm_sub_pd(ix3,jx0);
507 dy30 = _mm_sub_pd(iy3,jy0);
508 dz30 = _mm_sub_pd(iz3,jz0);
510 /* Calculate squared distance and things based on it */
511 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
512 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
513 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
514 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
516 rinv00 = gmx_mm_invsqrt_pd(rsq00);
517 rinv10 = gmx_mm_invsqrt_pd(rsq10);
518 rinv20 = gmx_mm_invsqrt_pd(rsq20);
519 rinv30 = gmx_mm_invsqrt_pd(rsq30);
521 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
522 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
523 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
524 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
526 /* Load parameters for j particles */
527 jq0 = _mm_load_sd(charge+jnrA+0);
528 vdwjidx0A = 2*vdwtype[jnrA+0];
530 fjx0 = _mm_setzero_pd();
531 fjy0 = _mm_setzero_pd();
532 fjz0 = _mm_setzero_pd();
534 /**************************
535 * CALCULATE INTERACTIONS *
536 **************************/
538 if (gmx_mm_any_lt(rsq00,rcutoff2))
541 r00 = _mm_mul_pd(rsq00,rinv00);
543 /* Compute parameters for interactions between i and j atoms */
544 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
546 c6grid_00 = gmx_mm_load_1real_pd(vdwgridparam+vdwioffset0+vdwjidx0A);
548 /* Analytical LJ-PME */
549 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
550 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
551 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
552 exponent = gmx_simd_exp_d(ewcljrsq);
553 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
554 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
555 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
556 vvdw6 = _mm_mul_pd(_mm_sub_pd(c6_00,_mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly))),rinvsix);
557 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
558 vvdw = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_00,_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))),one_twelfth),
559 _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_add_pd(_mm_mul_pd(c6_00,sh_vdw_invrcut6),_mm_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
560 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
561 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq00);
563 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
565 /* Update potential sum for this i atom from the interaction with this j atom. */
566 vvdw = _mm_and_pd(vvdw,cutoff_mask);
567 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
568 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
572 fscal = _mm_and_pd(fscal,cutoff_mask);
574 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
576 /* Calculate temporary vectorial force */
577 tx = _mm_mul_pd(fscal,dx00);
578 ty = _mm_mul_pd(fscal,dy00);
579 tz = _mm_mul_pd(fscal,dz00);
581 /* Update vectorial force */
582 fix0 = _mm_add_pd(fix0,tx);
583 fiy0 = _mm_add_pd(fiy0,ty);
584 fiz0 = _mm_add_pd(fiz0,tz);
586 fjx0 = _mm_add_pd(fjx0,tx);
587 fjy0 = _mm_add_pd(fjy0,ty);
588 fjz0 = _mm_add_pd(fjz0,tz);
592 /**************************
593 * CALCULATE INTERACTIONS *
594 **************************/
596 if (gmx_mm_any_lt(rsq10,rcutoff2))
599 r10 = _mm_mul_pd(rsq10,rinv10);
601 /* Compute parameters for interactions between i and j atoms */
602 qq10 = _mm_mul_pd(iq1,jq0);
604 /* EWALD ELECTROSTATICS */
606 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
607 ewrt = _mm_mul_pd(r10,ewtabscale);
608 ewitab = _mm_cvttpd_epi32(ewrt);
609 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
610 ewitab = _mm_slli_epi32(ewitab,2);
611 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
612 ewtabD = _mm_setzero_pd();
613 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
614 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
615 ewtabFn = _mm_setzero_pd();
616 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
617 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
618 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
619 velec = _mm_mul_pd(qq10,_mm_sub_pd(_mm_sub_pd(rinv10,sh_ewald),velec));
620 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
622 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
624 /* Update potential sum for this i atom from the interaction with this j atom. */
625 velec = _mm_and_pd(velec,cutoff_mask);
626 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
627 velecsum = _mm_add_pd(velecsum,velec);
631 fscal = _mm_and_pd(fscal,cutoff_mask);
633 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
635 /* Calculate temporary vectorial force */
636 tx = _mm_mul_pd(fscal,dx10);
637 ty = _mm_mul_pd(fscal,dy10);
638 tz = _mm_mul_pd(fscal,dz10);
640 /* Update vectorial force */
641 fix1 = _mm_add_pd(fix1,tx);
642 fiy1 = _mm_add_pd(fiy1,ty);
643 fiz1 = _mm_add_pd(fiz1,tz);
645 fjx0 = _mm_add_pd(fjx0,tx);
646 fjy0 = _mm_add_pd(fjy0,ty);
647 fjz0 = _mm_add_pd(fjz0,tz);
651 /**************************
652 * CALCULATE INTERACTIONS *
653 **************************/
655 if (gmx_mm_any_lt(rsq20,rcutoff2))
658 r20 = _mm_mul_pd(rsq20,rinv20);
660 /* Compute parameters for interactions between i and j atoms */
661 qq20 = _mm_mul_pd(iq2,jq0);
663 /* EWALD ELECTROSTATICS */
665 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
666 ewrt = _mm_mul_pd(r20,ewtabscale);
667 ewitab = _mm_cvttpd_epi32(ewrt);
668 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
669 ewitab = _mm_slli_epi32(ewitab,2);
670 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
671 ewtabD = _mm_setzero_pd();
672 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
673 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
674 ewtabFn = _mm_setzero_pd();
675 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
676 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
677 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
678 velec = _mm_mul_pd(qq20,_mm_sub_pd(_mm_sub_pd(rinv20,sh_ewald),velec));
679 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
681 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
683 /* Update potential sum for this i atom from the interaction with this j atom. */
684 velec = _mm_and_pd(velec,cutoff_mask);
685 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
686 velecsum = _mm_add_pd(velecsum,velec);
690 fscal = _mm_and_pd(fscal,cutoff_mask);
692 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
694 /* Calculate temporary vectorial force */
695 tx = _mm_mul_pd(fscal,dx20);
696 ty = _mm_mul_pd(fscal,dy20);
697 tz = _mm_mul_pd(fscal,dz20);
699 /* Update vectorial force */
700 fix2 = _mm_add_pd(fix2,tx);
701 fiy2 = _mm_add_pd(fiy2,ty);
702 fiz2 = _mm_add_pd(fiz2,tz);
704 fjx0 = _mm_add_pd(fjx0,tx);
705 fjy0 = _mm_add_pd(fjy0,ty);
706 fjz0 = _mm_add_pd(fjz0,tz);
710 /**************************
711 * CALCULATE INTERACTIONS *
712 **************************/
714 if (gmx_mm_any_lt(rsq30,rcutoff2))
717 r30 = _mm_mul_pd(rsq30,rinv30);
719 /* Compute parameters for interactions between i and j atoms */
720 qq30 = _mm_mul_pd(iq3,jq0);
722 /* EWALD ELECTROSTATICS */
724 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
725 ewrt = _mm_mul_pd(r30,ewtabscale);
726 ewitab = _mm_cvttpd_epi32(ewrt);
727 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
728 ewitab = _mm_slli_epi32(ewitab,2);
729 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
730 ewtabD = _mm_setzero_pd();
731 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
732 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
733 ewtabFn = _mm_setzero_pd();
734 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
735 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
736 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
737 velec = _mm_mul_pd(qq30,_mm_sub_pd(_mm_sub_pd(rinv30,sh_ewald),velec));
738 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
740 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
742 /* Update potential sum for this i atom from the interaction with this j atom. */
743 velec = _mm_and_pd(velec,cutoff_mask);
744 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
745 velecsum = _mm_add_pd(velecsum,velec);
749 fscal = _mm_and_pd(fscal,cutoff_mask);
751 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
753 /* Calculate temporary vectorial force */
754 tx = _mm_mul_pd(fscal,dx30);
755 ty = _mm_mul_pd(fscal,dy30);
756 tz = _mm_mul_pd(fscal,dz30);
758 /* Update vectorial force */
759 fix3 = _mm_add_pd(fix3,tx);
760 fiy3 = _mm_add_pd(fiy3,ty);
761 fiz3 = _mm_add_pd(fiz3,tz);
763 fjx0 = _mm_add_pd(fjx0,tx);
764 fjy0 = _mm_add_pd(fjy0,ty);
765 fjz0 = _mm_add_pd(fjz0,tz);
769 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
771 /* Inner loop uses 203 flops */
774 /* End of innermost loop */
776 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
777 f+i_coord_offset,fshift+i_shift_offset);
780 /* Update potential energies */
781 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
782 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
784 /* Increment number of inner iterations */
785 inneriter += j_index_end - j_index_start;
787 /* Outer loop uses 26 flops */
790 /* Increment number of outer iterations */
793 /* Update outer/inner flops */
795 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*203);
798 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_F_sse2_double
799 * Electrostatics interaction: Ewald
800 * VdW interaction: LJEwald
801 * Geometry: Water4-Particle
802 * Calculate force/pot: Force
805 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_F_sse2_double
806 (t_nblist * gmx_restrict nlist,
807 rvec * gmx_restrict xx,
808 rvec * gmx_restrict ff,
809 t_forcerec * gmx_restrict fr,
810 t_mdatoms * gmx_restrict mdatoms,
811 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
812 t_nrnb * gmx_restrict nrnb)
814 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
815 * just 0 for non-waters.
816 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
817 * jnr indices corresponding to data put in the four positions in the SIMD register.
819 int i_shift_offset,i_coord_offset,outeriter,inneriter;
820 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
822 int j_coord_offsetA,j_coord_offsetB;
823 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
825 real *shiftvec,*fshift,*x,*f;
826 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
828 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
830 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
832 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
834 __m128d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
835 int vdwjidx0A,vdwjidx0B;
836 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
837 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
838 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
839 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
840 __m128d dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
841 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
844 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
847 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
848 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
853 __m128d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
855 __m128d one_half = _mm_set1_pd(0.5);
856 __m128d minus_one = _mm_set1_pd(-1.0);
858 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
860 __m128d dummy_mask,cutoff_mask;
861 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
862 __m128d one = _mm_set1_pd(1.0);
863 __m128d two = _mm_set1_pd(2.0);
869 jindex = nlist->jindex;
871 shiftidx = nlist->shift;
873 shiftvec = fr->shift_vec[0];
874 fshift = fr->fshift[0];
875 facel = _mm_set1_pd(fr->epsfac);
876 charge = mdatoms->chargeA;
877 nvdwtype = fr->ntype;
879 vdwtype = mdatoms->typeA;
880 vdwgridparam = fr->ljpme_c6grid;
881 sh_lj_ewald = _mm_set1_pd(fr->ic->sh_lj_ewald);
882 ewclj = _mm_set1_pd(fr->ewaldcoeff_lj);
883 ewclj2 = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
885 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
886 ewtab = fr->ic->tabq_coul_F;
887 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
888 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
890 /* Setup water-specific parameters */
891 inr = nlist->iinr[0];
892 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
893 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
894 iq3 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
895 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
897 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
898 rcutoff_scalar = fr->rcoulomb;
899 rcutoff = _mm_set1_pd(rcutoff_scalar);
900 rcutoff2 = _mm_mul_pd(rcutoff,rcutoff);
902 sh_vdw_invrcut6 = _mm_set1_pd(fr->ic->sh_invrc6);
903 rvdw = _mm_set1_pd(fr->rvdw);
905 /* Avoid stupid compiler warnings */
913 /* Start outer loop over neighborlists */
914 for(iidx=0; iidx<nri; iidx++)
916 /* Load shift vector for this list */
917 i_shift_offset = DIM*shiftidx[iidx];
919 /* Load limits for loop over neighbors */
920 j_index_start = jindex[iidx];
921 j_index_end = jindex[iidx+1];
923 /* Get outer coordinate index */
925 i_coord_offset = DIM*inr;
927 /* Load i particle coords and add shift vector */
928 gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
929 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
931 fix0 = _mm_setzero_pd();
932 fiy0 = _mm_setzero_pd();
933 fiz0 = _mm_setzero_pd();
934 fix1 = _mm_setzero_pd();
935 fiy1 = _mm_setzero_pd();
936 fiz1 = _mm_setzero_pd();
937 fix2 = _mm_setzero_pd();
938 fiy2 = _mm_setzero_pd();
939 fiz2 = _mm_setzero_pd();
940 fix3 = _mm_setzero_pd();
941 fiy3 = _mm_setzero_pd();
942 fiz3 = _mm_setzero_pd();
944 /* Start inner kernel loop */
945 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
948 /* Get j neighbor index, and coordinate index */
951 j_coord_offsetA = DIM*jnrA;
952 j_coord_offsetB = DIM*jnrB;
954 /* load j atom coordinates */
955 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
958 /* Calculate displacement vector */
959 dx00 = _mm_sub_pd(ix0,jx0);
960 dy00 = _mm_sub_pd(iy0,jy0);
961 dz00 = _mm_sub_pd(iz0,jz0);
962 dx10 = _mm_sub_pd(ix1,jx0);
963 dy10 = _mm_sub_pd(iy1,jy0);
964 dz10 = _mm_sub_pd(iz1,jz0);
965 dx20 = _mm_sub_pd(ix2,jx0);
966 dy20 = _mm_sub_pd(iy2,jy0);
967 dz20 = _mm_sub_pd(iz2,jz0);
968 dx30 = _mm_sub_pd(ix3,jx0);
969 dy30 = _mm_sub_pd(iy3,jy0);
970 dz30 = _mm_sub_pd(iz3,jz0);
972 /* Calculate squared distance and things based on it */
973 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
974 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
975 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
976 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
978 rinv00 = gmx_mm_invsqrt_pd(rsq00);
979 rinv10 = gmx_mm_invsqrt_pd(rsq10);
980 rinv20 = gmx_mm_invsqrt_pd(rsq20);
981 rinv30 = gmx_mm_invsqrt_pd(rsq30);
983 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
984 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
985 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
986 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
988 /* Load parameters for j particles */
989 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
990 vdwjidx0A = 2*vdwtype[jnrA+0];
991 vdwjidx0B = 2*vdwtype[jnrB+0];
993 fjx0 = _mm_setzero_pd();
994 fjy0 = _mm_setzero_pd();
995 fjz0 = _mm_setzero_pd();
997 /**************************
998 * CALCULATE INTERACTIONS *
999 **************************/
1001 if (gmx_mm_any_lt(rsq00,rcutoff2))
1004 r00 = _mm_mul_pd(rsq00,rinv00);
1006 /* Compute parameters for interactions between i and j atoms */
1007 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
1008 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
1010 c6grid_00 = gmx_mm_load_2real_swizzle_pd(vdwgridparam+vdwioffset0+vdwjidx0A,
1011 vdwgridparam+vdwioffset0+vdwjidx0B);
1013 /* Analytical LJ-PME */
1014 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1015 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1016 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1017 exponent = gmx_simd_exp_d(ewcljrsq);
1018 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1019 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1020 /* f6A = 6 * C6grid * (1 - poly) */
1021 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1022 /* f6B = C6grid * exponent * beta^6 */
1023 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1024 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1025 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1027 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1031 fscal = _mm_and_pd(fscal,cutoff_mask);
1033 /* Calculate temporary vectorial force */
1034 tx = _mm_mul_pd(fscal,dx00);
1035 ty = _mm_mul_pd(fscal,dy00);
1036 tz = _mm_mul_pd(fscal,dz00);
1038 /* Update vectorial force */
1039 fix0 = _mm_add_pd(fix0,tx);
1040 fiy0 = _mm_add_pd(fiy0,ty);
1041 fiz0 = _mm_add_pd(fiz0,tz);
1043 fjx0 = _mm_add_pd(fjx0,tx);
1044 fjy0 = _mm_add_pd(fjy0,ty);
1045 fjz0 = _mm_add_pd(fjz0,tz);
1049 /**************************
1050 * CALCULATE INTERACTIONS *
1051 **************************/
1053 if (gmx_mm_any_lt(rsq10,rcutoff2))
1056 r10 = _mm_mul_pd(rsq10,rinv10);
1058 /* Compute parameters for interactions between i and j atoms */
1059 qq10 = _mm_mul_pd(iq1,jq0);
1061 /* EWALD ELECTROSTATICS */
1063 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1064 ewrt = _mm_mul_pd(r10,ewtabscale);
1065 ewitab = _mm_cvttpd_epi32(ewrt);
1066 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1067 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1069 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1070 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1072 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1076 fscal = _mm_and_pd(fscal,cutoff_mask);
1078 /* Calculate temporary vectorial force */
1079 tx = _mm_mul_pd(fscal,dx10);
1080 ty = _mm_mul_pd(fscal,dy10);
1081 tz = _mm_mul_pd(fscal,dz10);
1083 /* Update vectorial force */
1084 fix1 = _mm_add_pd(fix1,tx);
1085 fiy1 = _mm_add_pd(fiy1,ty);
1086 fiz1 = _mm_add_pd(fiz1,tz);
1088 fjx0 = _mm_add_pd(fjx0,tx);
1089 fjy0 = _mm_add_pd(fjy0,ty);
1090 fjz0 = _mm_add_pd(fjz0,tz);
1094 /**************************
1095 * CALCULATE INTERACTIONS *
1096 **************************/
1098 if (gmx_mm_any_lt(rsq20,rcutoff2))
1101 r20 = _mm_mul_pd(rsq20,rinv20);
1103 /* Compute parameters for interactions between i and j atoms */
1104 qq20 = _mm_mul_pd(iq2,jq0);
1106 /* EWALD ELECTROSTATICS */
1108 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1109 ewrt = _mm_mul_pd(r20,ewtabscale);
1110 ewitab = _mm_cvttpd_epi32(ewrt);
1111 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1112 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1114 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1115 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1117 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1121 fscal = _mm_and_pd(fscal,cutoff_mask);
1123 /* Calculate temporary vectorial force */
1124 tx = _mm_mul_pd(fscal,dx20);
1125 ty = _mm_mul_pd(fscal,dy20);
1126 tz = _mm_mul_pd(fscal,dz20);
1128 /* Update vectorial force */
1129 fix2 = _mm_add_pd(fix2,tx);
1130 fiy2 = _mm_add_pd(fiy2,ty);
1131 fiz2 = _mm_add_pd(fiz2,tz);
1133 fjx0 = _mm_add_pd(fjx0,tx);
1134 fjy0 = _mm_add_pd(fjy0,ty);
1135 fjz0 = _mm_add_pd(fjz0,tz);
1139 /**************************
1140 * CALCULATE INTERACTIONS *
1141 **************************/
1143 if (gmx_mm_any_lt(rsq30,rcutoff2))
1146 r30 = _mm_mul_pd(rsq30,rinv30);
1148 /* Compute parameters for interactions between i and j atoms */
1149 qq30 = _mm_mul_pd(iq3,jq0);
1151 /* EWALD ELECTROSTATICS */
1153 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1154 ewrt = _mm_mul_pd(r30,ewtabscale);
1155 ewitab = _mm_cvttpd_epi32(ewrt);
1156 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1157 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1159 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1160 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
1162 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
1166 fscal = _mm_and_pd(fscal,cutoff_mask);
1168 /* Calculate temporary vectorial force */
1169 tx = _mm_mul_pd(fscal,dx30);
1170 ty = _mm_mul_pd(fscal,dy30);
1171 tz = _mm_mul_pd(fscal,dz30);
1173 /* Update vectorial force */
1174 fix3 = _mm_add_pd(fix3,tx);
1175 fiy3 = _mm_add_pd(fiy3,ty);
1176 fiz3 = _mm_add_pd(fiz3,tz);
1178 fjx0 = _mm_add_pd(fjx0,tx);
1179 fjy0 = _mm_add_pd(fjy0,ty);
1180 fjz0 = _mm_add_pd(fjz0,tz);
1184 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
1186 /* Inner loop uses 169 flops */
1189 if(jidx<j_index_end)
1193 j_coord_offsetA = DIM*jnrA;
1195 /* load j atom coordinates */
1196 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1199 /* Calculate displacement vector */
1200 dx00 = _mm_sub_pd(ix0,jx0);
1201 dy00 = _mm_sub_pd(iy0,jy0);
1202 dz00 = _mm_sub_pd(iz0,jz0);
1203 dx10 = _mm_sub_pd(ix1,jx0);
1204 dy10 = _mm_sub_pd(iy1,jy0);
1205 dz10 = _mm_sub_pd(iz1,jz0);
1206 dx20 = _mm_sub_pd(ix2,jx0);
1207 dy20 = _mm_sub_pd(iy2,jy0);
1208 dz20 = _mm_sub_pd(iz2,jz0);
1209 dx30 = _mm_sub_pd(ix3,jx0);
1210 dy30 = _mm_sub_pd(iy3,jy0);
1211 dz30 = _mm_sub_pd(iz3,jz0);
1213 /* Calculate squared distance and things based on it */
1214 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1215 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1216 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1217 rsq30 = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
1219 rinv00 = gmx_mm_invsqrt_pd(rsq00);
1220 rinv10 = gmx_mm_invsqrt_pd(rsq10);
1221 rinv20 = gmx_mm_invsqrt_pd(rsq20);
1222 rinv30 = gmx_mm_invsqrt_pd(rsq30);
1224 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1225 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1226 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1227 rinvsq30 = _mm_mul_pd(rinv30,rinv30);
1229 /* Load parameters for j particles */
1230 jq0 = _mm_load_sd(charge+jnrA+0);
1231 vdwjidx0A = 2*vdwtype[jnrA+0];
1233 fjx0 = _mm_setzero_pd();
1234 fjy0 = _mm_setzero_pd();
1235 fjz0 = _mm_setzero_pd();
1237 /**************************
1238 * CALCULATE INTERACTIONS *
1239 **************************/
1241 if (gmx_mm_any_lt(rsq00,rcutoff2))
1244 r00 = _mm_mul_pd(rsq00,rinv00);
1246 /* Compute parameters for interactions between i and j atoms */
1247 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
1249 c6grid_00 = gmx_mm_load_1real_pd(vdwgridparam+vdwioffset0+vdwjidx0A);
1251 /* Analytical LJ-PME */
1252 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1253 ewcljrsq = _mm_mul_pd(ewclj2,rsq00);
1254 ewclj6 = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
1255 exponent = gmx_simd_exp_d(ewcljrsq);
1256 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1257 poly = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1258 /* f6A = 6 * C6grid * (1 - poly) */
1259 f6A = _mm_mul_pd(c6grid_00,_mm_sub_pd(one,poly));
1260 /* f6B = C6grid * exponent * beta^6 */
1261 f6B = _mm_mul_pd(_mm_mul_pd(c6grid_00,one_sixth),_mm_mul_pd(exponent,ewclj6));
1262 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1263 fvdw = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),_mm_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1265 cutoff_mask = _mm_cmplt_pd(rsq00,rcutoff2);
1269 fscal = _mm_and_pd(fscal,cutoff_mask);
1271 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1273 /* Calculate temporary vectorial force */
1274 tx = _mm_mul_pd(fscal,dx00);
1275 ty = _mm_mul_pd(fscal,dy00);
1276 tz = _mm_mul_pd(fscal,dz00);
1278 /* Update vectorial force */
1279 fix0 = _mm_add_pd(fix0,tx);
1280 fiy0 = _mm_add_pd(fiy0,ty);
1281 fiz0 = _mm_add_pd(fiz0,tz);
1283 fjx0 = _mm_add_pd(fjx0,tx);
1284 fjy0 = _mm_add_pd(fjy0,ty);
1285 fjz0 = _mm_add_pd(fjz0,tz);
1289 /**************************
1290 * CALCULATE INTERACTIONS *
1291 **************************/
1293 if (gmx_mm_any_lt(rsq10,rcutoff2))
1296 r10 = _mm_mul_pd(rsq10,rinv10);
1298 /* Compute parameters for interactions between i and j atoms */
1299 qq10 = _mm_mul_pd(iq1,jq0);
1301 /* EWALD ELECTROSTATICS */
1303 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1304 ewrt = _mm_mul_pd(r10,ewtabscale);
1305 ewitab = _mm_cvttpd_epi32(ewrt);
1306 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1307 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1308 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1309 felec = _mm_mul_pd(_mm_mul_pd(qq10,rinv10),_mm_sub_pd(rinvsq10,felec));
1311 cutoff_mask = _mm_cmplt_pd(rsq10,rcutoff2);
1315 fscal = _mm_and_pd(fscal,cutoff_mask);
1317 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1319 /* Calculate temporary vectorial force */
1320 tx = _mm_mul_pd(fscal,dx10);
1321 ty = _mm_mul_pd(fscal,dy10);
1322 tz = _mm_mul_pd(fscal,dz10);
1324 /* Update vectorial force */
1325 fix1 = _mm_add_pd(fix1,tx);
1326 fiy1 = _mm_add_pd(fiy1,ty);
1327 fiz1 = _mm_add_pd(fiz1,tz);
1329 fjx0 = _mm_add_pd(fjx0,tx);
1330 fjy0 = _mm_add_pd(fjy0,ty);
1331 fjz0 = _mm_add_pd(fjz0,tz);
1335 /**************************
1336 * CALCULATE INTERACTIONS *
1337 **************************/
1339 if (gmx_mm_any_lt(rsq20,rcutoff2))
1342 r20 = _mm_mul_pd(rsq20,rinv20);
1344 /* Compute parameters for interactions between i and j atoms */
1345 qq20 = _mm_mul_pd(iq2,jq0);
1347 /* EWALD ELECTROSTATICS */
1349 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1350 ewrt = _mm_mul_pd(r20,ewtabscale);
1351 ewitab = _mm_cvttpd_epi32(ewrt);
1352 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1353 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1354 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1355 felec = _mm_mul_pd(_mm_mul_pd(qq20,rinv20),_mm_sub_pd(rinvsq20,felec));
1357 cutoff_mask = _mm_cmplt_pd(rsq20,rcutoff2);
1361 fscal = _mm_and_pd(fscal,cutoff_mask);
1363 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1365 /* Calculate temporary vectorial force */
1366 tx = _mm_mul_pd(fscal,dx20);
1367 ty = _mm_mul_pd(fscal,dy20);
1368 tz = _mm_mul_pd(fscal,dz20);
1370 /* Update vectorial force */
1371 fix2 = _mm_add_pd(fix2,tx);
1372 fiy2 = _mm_add_pd(fiy2,ty);
1373 fiz2 = _mm_add_pd(fiz2,tz);
1375 fjx0 = _mm_add_pd(fjx0,tx);
1376 fjy0 = _mm_add_pd(fjy0,ty);
1377 fjz0 = _mm_add_pd(fjz0,tz);
1381 /**************************
1382 * CALCULATE INTERACTIONS *
1383 **************************/
1385 if (gmx_mm_any_lt(rsq30,rcutoff2))
1388 r30 = _mm_mul_pd(rsq30,rinv30);
1390 /* Compute parameters for interactions between i and j atoms */
1391 qq30 = _mm_mul_pd(iq3,jq0);
1393 /* EWALD ELECTROSTATICS */
1395 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1396 ewrt = _mm_mul_pd(r30,ewtabscale);
1397 ewitab = _mm_cvttpd_epi32(ewrt);
1398 eweps = _mm_sub_pd(ewrt,_mm_cvtepi32_pd(ewitab));
1399 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
1400 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
1401 felec = _mm_mul_pd(_mm_mul_pd(qq30,rinv30),_mm_sub_pd(rinvsq30,felec));
1403 cutoff_mask = _mm_cmplt_pd(rsq30,rcutoff2);
1407 fscal = _mm_and_pd(fscal,cutoff_mask);
1409 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1411 /* Calculate temporary vectorial force */
1412 tx = _mm_mul_pd(fscal,dx30);
1413 ty = _mm_mul_pd(fscal,dy30);
1414 tz = _mm_mul_pd(fscal,dz30);
1416 /* Update vectorial force */
1417 fix3 = _mm_add_pd(fix3,tx);
1418 fiy3 = _mm_add_pd(fiy3,ty);
1419 fiz3 = _mm_add_pd(fiz3,tz);
1421 fjx0 = _mm_add_pd(fjx0,tx);
1422 fjy0 = _mm_add_pd(fjy0,ty);
1423 fjz0 = _mm_add_pd(fjz0,tz);
1427 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1429 /* Inner loop uses 169 flops */
1432 /* End of innermost loop */
1434 gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1435 f+i_coord_offset,fshift+i_shift_offset);
1437 /* Increment number of inner iterations */
1438 inneriter += j_index_end - j_index_start;
1440 /* Outer loop uses 24 flops */
1443 /* Increment number of outer iterations */
1446 /* Update outer/inner flops */
1448 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*169);