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36 * Note: this file was generated by the GROMACS sparc64_hpc_ace_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "types/simple.h"
46 #include "gromacs/legacyheaders/vec.h"
49 #include "kernelutil_sparc64_hpc_ace_double.h"
52 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomW4P1_VF_sparc64_hpc_ace_double
53 * Electrostatics interaction: ReactionField
54 * VdW interaction: LennardJones
55 * Geometry: Water4-Particle
56 * Calculate force/pot: PotentialAndForce
59 nb_kernel_ElecRF_VdwLJ_GeomW4P1_VF_sparc64_hpc_ace_double
60 (t_nblist * gmx_restrict nlist,
61 rvec * gmx_restrict xx,
62 rvec * gmx_restrict ff,
63 t_forcerec * gmx_restrict fr,
64 t_mdatoms * gmx_restrict mdatoms,
65 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
66 t_nrnb * gmx_restrict nrnb)
68 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
69 * just 0 for non-waters.
70 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
71 * jnr indices corresponding to data put in the four positions in the SIMD register.
73 int i_shift_offset,i_coord_offset,outeriter,inneriter;
74 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
76 int j_coord_offsetA,j_coord_offsetB;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
82 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
84 _fjsp_v2r8 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
86 _fjsp_v2r8 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 _fjsp_v2r8 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
89 int vdwjidx0A,vdwjidx0B;
90 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
91 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
92 _fjsp_v2r8 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
93 _fjsp_v2r8 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
94 _fjsp_v2r8 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
95 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
98 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
101 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
102 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
104 _fjsp_v2r8 dummy_mask,cutoff_mask;
105 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
106 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
107 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
114 jindex = nlist->jindex;
116 shiftidx = nlist->shift;
118 shiftvec = fr->shift_vec[0];
119 fshift = fr->fshift[0];
120 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
121 charge = mdatoms->chargeA;
122 krf = gmx_fjsp_set1_v2r8(fr->ic->k_rf);
123 krf2 = gmx_fjsp_set1_v2r8(fr->ic->k_rf*2.0);
124 crf = gmx_fjsp_set1_v2r8(fr->ic->c_rf);
125 nvdwtype = fr->ntype;
127 vdwtype = mdatoms->typeA;
129 /* Setup water-specific parameters */
130 inr = nlist->iinr[0];
131 iq1 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+1]));
132 iq2 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+2]));
133 iq3 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+3]));
134 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
136 /* Avoid stupid compiler warnings */
144 /* Start outer loop over neighborlists */
145 for(iidx=0; iidx<nri; iidx++)
147 /* Load shift vector for this list */
148 i_shift_offset = DIM*shiftidx[iidx];
150 /* Load limits for loop over neighbors */
151 j_index_start = jindex[iidx];
152 j_index_end = jindex[iidx+1];
154 /* Get outer coordinate index */
156 i_coord_offset = DIM*inr;
158 /* Load i particle coords and add shift vector */
159 gmx_fjsp_load_shift_and_4rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,
160 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
162 fix0 = _fjsp_setzero_v2r8();
163 fiy0 = _fjsp_setzero_v2r8();
164 fiz0 = _fjsp_setzero_v2r8();
165 fix1 = _fjsp_setzero_v2r8();
166 fiy1 = _fjsp_setzero_v2r8();
167 fiz1 = _fjsp_setzero_v2r8();
168 fix2 = _fjsp_setzero_v2r8();
169 fiy2 = _fjsp_setzero_v2r8();
170 fiz2 = _fjsp_setzero_v2r8();
171 fix3 = _fjsp_setzero_v2r8();
172 fiy3 = _fjsp_setzero_v2r8();
173 fiz3 = _fjsp_setzero_v2r8();
175 /* Reset potential sums */
176 velecsum = _fjsp_setzero_v2r8();
177 vvdwsum = _fjsp_setzero_v2r8();
179 /* Start inner kernel loop */
180 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
183 /* Get j neighbor index, and coordinate index */
186 j_coord_offsetA = DIM*jnrA;
187 j_coord_offsetB = DIM*jnrB;
189 /* load j atom coordinates */
190 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
193 /* Calculate displacement vector */
194 dx00 = _fjsp_sub_v2r8(ix0,jx0);
195 dy00 = _fjsp_sub_v2r8(iy0,jy0);
196 dz00 = _fjsp_sub_v2r8(iz0,jz0);
197 dx10 = _fjsp_sub_v2r8(ix1,jx0);
198 dy10 = _fjsp_sub_v2r8(iy1,jy0);
199 dz10 = _fjsp_sub_v2r8(iz1,jz0);
200 dx20 = _fjsp_sub_v2r8(ix2,jx0);
201 dy20 = _fjsp_sub_v2r8(iy2,jy0);
202 dz20 = _fjsp_sub_v2r8(iz2,jz0);
203 dx30 = _fjsp_sub_v2r8(ix3,jx0);
204 dy30 = _fjsp_sub_v2r8(iy3,jy0);
205 dz30 = _fjsp_sub_v2r8(iz3,jz0);
207 /* Calculate squared distance and things based on it */
208 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
209 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
210 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
211 rsq30 = gmx_fjsp_calc_rsq_v2r8(dx30,dy30,dz30);
213 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
214 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
215 rinv30 = gmx_fjsp_invsqrt_v2r8(rsq30);
217 rinvsq00 = gmx_fjsp_inv_v2r8(rsq00);
218 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
219 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
220 rinvsq30 = _fjsp_mul_v2r8(rinv30,rinv30);
222 /* Load parameters for j particles */
223 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
224 vdwjidx0A = 2*vdwtype[jnrA+0];
225 vdwjidx0B = 2*vdwtype[jnrB+0];
227 fjx0 = _fjsp_setzero_v2r8();
228 fjy0 = _fjsp_setzero_v2r8();
229 fjz0 = _fjsp_setzero_v2r8();
231 /**************************
232 * CALCULATE INTERACTIONS *
233 **************************/
235 /* Compute parameters for interactions between i and j atoms */
236 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
237 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
239 /* LENNARD-JONES DISPERSION/REPULSION */
241 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
242 vvdw6 = _fjsp_mul_v2r8(c6_00,rinvsix);
243 vvdw12 = _fjsp_mul_v2r8(c12_00,_fjsp_mul_v2r8(rinvsix,rinvsix));
244 vvdw = _fjsp_msub_v2r8( vvdw12,one_twelfth, _fjsp_mul_v2r8(vvdw6,one_sixth) );
245 fvdw = _fjsp_mul_v2r8(_fjsp_sub_v2r8(vvdw12,vvdw6),rinvsq00);
247 /* Update potential sum for this i atom from the interaction with this j atom. */
248 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
252 /* Update vectorial force */
253 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
254 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
255 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
257 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
258 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
259 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
261 /**************************
262 * CALCULATE INTERACTIONS *
263 **************************/
265 /* Compute parameters for interactions between i and j atoms */
266 qq10 = _fjsp_mul_v2r8(iq1,jq0);
268 /* REACTION-FIELD ELECTROSTATICS */
269 velec = _fjsp_mul_v2r8(qq10,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq10,rinv10),crf));
270 felec = _fjsp_mul_v2r8(qq10,_fjsp_msub_v2r8(rinv10,rinvsq10,krf2));
272 /* Update potential sum for this i atom from the interaction with this j atom. */
273 velecsum = _fjsp_add_v2r8(velecsum,velec);
277 /* Update vectorial force */
278 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
279 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
280 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
282 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
283 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
284 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
286 /**************************
287 * CALCULATE INTERACTIONS *
288 **************************/
290 /* Compute parameters for interactions between i and j atoms */
291 qq20 = _fjsp_mul_v2r8(iq2,jq0);
293 /* REACTION-FIELD ELECTROSTATICS */
294 velec = _fjsp_mul_v2r8(qq20,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq20,rinv20),crf));
295 felec = _fjsp_mul_v2r8(qq20,_fjsp_msub_v2r8(rinv20,rinvsq20,krf2));
297 /* Update potential sum for this i atom from the interaction with this j atom. */
298 velecsum = _fjsp_add_v2r8(velecsum,velec);
302 /* Update vectorial force */
303 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
304 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
305 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
307 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
308 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
309 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
311 /**************************
312 * CALCULATE INTERACTIONS *
313 **************************/
315 /* Compute parameters for interactions between i and j atoms */
316 qq30 = _fjsp_mul_v2r8(iq3,jq0);
318 /* REACTION-FIELD ELECTROSTATICS */
319 velec = _fjsp_mul_v2r8(qq30,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq30,rinv30),crf));
320 felec = _fjsp_mul_v2r8(qq30,_fjsp_msub_v2r8(rinv30,rinvsq30,krf2));
322 /* Update potential sum for this i atom from the interaction with this j atom. */
323 velecsum = _fjsp_add_v2r8(velecsum,velec);
327 /* Update vectorial force */
328 fix3 = _fjsp_madd_v2r8(dx30,fscal,fix3);
329 fiy3 = _fjsp_madd_v2r8(dy30,fscal,fiy3);
330 fiz3 = _fjsp_madd_v2r8(dz30,fscal,fiz3);
332 fjx0 = _fjsp_madd_v2r8(dx30,fscal,fjx0);
333 fjy0 = _fjsp_madd_v2r8(dy30,fscal,fjy0);
334 fjz0 = _fjsp_madd_v2r8(dz30,fscal,fjz0);
336 gmx_fjsp_decrement_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
338 /* Inner loop uses 143 flops */
345 j_coord_offsetA = DIM*jnrA;
347 /* load j atom coordinates */
348 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
351 /* Calculate displacement vector */
352 dx00 = _fjsp_sub_v2r8(ix0,jx0);
353 dy00 = _fjsp_sub_v2r8(iy0,jy0);
354 dz00 = _fjsp_sub_v2r8(iz0,jz0);
355 dx10 = _fjsp_sub_v2r8(ix1,jx0);
356 dy10 = _fjsp_sub_v2r8(iy1,jy0);
357 dz10 = _fjsp_sub_v2r8(iz1,jz0);
358 dx20 = _fjsp_sub_v2r8(ix2,jx0);
359 dy20 = _fjsp_sub_v2r8(iy2,jy0);
360 dz20 = _fjsp_sub_v2r8(iz2,jz0);
361 dx30 = _fjsp_sub_v2r8(ix3,jx0);
362 dy30 = _fjsp_sub_v2r8(iy3,jy0);
363 dz30 = _fjsp_sub_v2r8(iz3,jz0);
365 /* Calculate squared distance and things based on it */
366 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
367 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
368 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
369 rsq30 = gmx_fjsp_calc_rsq_v2r8(dx30,dy30,dz30);
371 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
372 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
373 rinv30 = gmx_fjsp_invsqrt_v2r8(rsq30);
375 rinvsq00 = gmx_fjsp_inv_v2r8(rsq00);
376 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
377 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
378 rinvsq30 = _fjsp_mul_v2r8(rinv30,rinv30);
380 /* Load parameters for j particles */
381 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
382 vdwjidx0A = 2*vdwtype[jnrA+0];
384 fjx0 = _fjsp_setzero_v2r8();
385 fjy0 = _fjsp_setzero_v2r8();
386 fjz0 = _fjsp_setzero_v2r8();
388 /**************************
389 * CALCULATE INTERACTIONS *
390 **************************/
392 /* Compute parameters for interactions between i and j atoms */
393 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
394 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
396 /* LENNARD-JONES DISPERSION/REPULSION */
398 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
399 vvdw6 = _fjsp_mul_v2r8(c6_00,rinvsix);
400 vvdw12 = _fjsp_mul_v2r8(c12_00,_fjsp_mul_v2r8(rinvsix,rinvsix));
401 vvdw = _fjsp_msub_v2r8( vvdw12,one_twelfth, _fjsp_mul_v2r8(vvdw6,one_sixth) );
402 fvdw = _fjsp_mul_v2r8(_fjsp_sub_v2r8(vvdw12,vvdw6),rinvsq00);
404 /* Update potential sum for this i atom from the interaction with this j atom. */
405 vvdw = _fjsp_unpacklo_v2r8(vvdw,_fjsp_setzero_v2r8());
406 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
410 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
412 /* Update vectorial force */
413 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
414 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
415 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
417 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
418 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
419 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
421 /**************************
422 * CALCULATE INTERACTIONS *
423 **************************/
425 /* Compute parameters for interactions between i and j atoms */
426 qq10 = _fjsp_mul_v2r8(iq1,jq0);
428 /* REACTION-FIELD ELECTROSTATICS */
429 velec = _fjsp_mul_v2r8(qq10,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq10,rinv10),crf));
430 felec = _fjsp_mul_v2r8(qq10,_fjsp_msub_v2r8(rinv10,rinvsq10,krf2));
432 /* Update potential sum for this i atom from the interaction with this j atom. */
433 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
434 velecsum = _fjsp_add_v2r8(velecsum,velec);
438 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
440 /* Update vectorial force */
441 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
442 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
443 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
445 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
446 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
447 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
449 /**************************
450 * CALCULATE INTERACTIONS *
451 **************************/
453 /* Compute parameters for interactions between i and j atoms */
454 qq20 = _fjsp_mul_v2r8(iq2,jq0);
456 /* REACTION-FIELD ELECTROSTATICS */
457 velec = _fjsp_mul_v2r8(qq20,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq20,rinv20),crf));
458 felec = _fjsp_mul_v2r8(qq20,_fjsp_msub_v2r8(rinv20,rinvsq20,krf2));
460 /* Update potential sum for this i atom from the interaction with this j atom. */
461 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
462 velecsum = _fjsp_add_v2r8(velecsum,velec);
466 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
468 /* Update vectorial force */
469 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
470 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
471 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
473 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
474 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
475 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
477 /**************************
478 * CALCULATE INTERACTIONS *
479 **************************/
481 /* Compute parameters for interactions between i and j atoms */
482 qq30 = _fjsp_mul_v2r8(iq3,jq0);
484 /* REACTION-FIELD ELECTROSTATICS */
485 velec = _fjsp_mul_v2r8(qq30,_fjsp_sub_v2r8(_fjsp_madd_v2r8(krf,rsq30,rinv30),crf));
486 felec = _fjsp_mul_v2r8(qq30,_fjsp_msub_v2r8(rinv30,rinvsq30,krf2));
488 /* Update potential sum for this i atom from the interaction with this j atom. */
489 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
490 velecsum = _fjsp_add_v2r8(velecsum,velec);
494 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
496 /* Update vectorial force */
497 fix3 = _fjsp_madd_v2r8(dx30,fscal,fix3);
498 fiy3 = _fjsp_madd_v2r8(dy30,fscal,fiy3);
499 fiz3 = _fjsp_madd_v2r8(dz30,fscal,fiz3);
501 fjx0 = _fjsp_madd_v2r8(dx30,fscal,fjx0);
502 fjy0 = _fjsp_madd_v2r8(dy30,fscal,fjy0);
503 fjz0 = _fjsp_madd_v2r8(dz30,fscal,fjz0);
505 gmx_fjsp_decrement_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fjx0,fjy0,fjz0);
507 /* Inner loop uses 143 flops */
510 /* End of innermost loop */
512 gmx_fjsp_update_iforce_4atom_swizzle_v2r8(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
513 f+i_coord_offset,fshift+i_shift_offset);
516 /* Update potential energies */
517 gmx_fjsp_update_1pot_v2r8(velecsum,kernel_data->energygrp_elec+ggid);
518 gmx_fjsp_update_1pot_v2r8(vvdwsum,kernel_data->energygrp_vdw+ggid);
520 /* Increment number of inner iterations */
521 inneriter += j_index_end - j_index_start;
523 /* Outer loop uses 26 flops */
526 /* Increment number of outer iterations */
529 /* Update outer/inner flops */
531 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*143);
534 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomW4P1_F_sparc64_hpc_ace_double
535 * Electrostatics interaction: ReactionField
536 * VdW interaction: LennardJones
537 * Geometry: Water4-Particle
538 * Calculate force/pot: Force
541 nb_kernel_ElecRF_VdwLJ_GeomW4P1_F_sparc64_hpc_ace_double
542 (t_nblist * gmx_restrict nlist,
543 rvec * gmx_restrict xx,
544 rvec * gmx_restrict ff,
545 t_forcerec * gmx_restrict fr,
546 t_mdatoms * gmx_restrict mdatoms,
547 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
548 t_nrnb * gmx_restrict nrnb)
550 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
551 * just 0 for non-waters.
552 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
553 * jnr indices corresponding to data put in the four positions in the SIMD register.
555 int i_shift_offset,i_coord_offset,outeriter,inneriter;
556 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
558 int j_coord_offsetA,j_coord_offsetB;
559 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
561 real *shiftvec,*fshift,*x,*f;
562 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
564 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
566 _fjsp_v2r8 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
568 _fjsp_v2r8 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
570 _fjsp_v2r8 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
571 int vdwjidx0A,vdwjidx0B;
572 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
573 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
574 _fjsp_v2r8 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
575 _fjsp_v2r8 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
576 _fjsp_v2r8 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
577 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
580 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
583 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
584 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
586 _fjsp_v2r8 dummy_mask,cutoff_mask;
587 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
588 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
589 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
596 jindex = nlist->jindex;
598 shiftidx = nlist->shift;
600 shiftvec = fr->shift_vec[0];
601 fshift = fr->fshift[0];
602 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
603 charge = mdatoms->chargeA;
604 krf = gmx_fjsp_set1_v2r8(fr->ic->k_rf);
605 krf2 = gmx_fjsp_set1_v2r8(fr->ic->k_rf*2.0);
606 crf = gmx_fjsp_set1_v2r8(fr->ic->c_rf);
607 nvdwtype = fr->ntype;
609 vdwtype = mdatoms->typeA;
611 /* Setup water-specific parameters */
612 inr = nlist->iinr[0];
613 iq1 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+1]));
614 iq2 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+2]));
615 iq3 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+3]));
616 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
618 /* Avoid stupid compiler warnings */
626 /* Start outer loop over neighborlists */
627 for(iidx=0; iidx<nri; iidx++)
629 /* Load shift vector for this list */
630 i_shift_offset = DIM*shiftidx[iidx];
632 /* Load limits for loop over neighbors */
633 j_index_start = jindex[iidx];
634 j_index_end = jindex[iidx+1];
636 /* Get outer coordinate index */
638 i_coord_offset = DIM*inr;
640 /* Load i particle coords and add shift vector */
641 gmx_fjsp_load_shift_and_4rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,
642 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
644 fix0 = _fjsp_setzero_v2r8();
645 fiy0 = _fjsp_setzero_v2r8();
646 fiz0 = _fjsp_setzero_v2r8();
647 fix1 = _fjsp_setzero_v2r8();
648 fiy1 = _fjsp_setzero_v2r8();
649 fiz1 = _fjsp_setzero_v2r8();
650 fix2 = _fjsp_setzero_v2r8();
651 fiy2 = _fjsp_setzero_v2r8();
652 fiz2 = _fjsp_setzero_v2r8();
653 fix3 = _fjsp_setzero_v2r8();
654 fiy3 = _fjsp_setzero_v2r8();
655 fiz3 = _fjsp_setzero_v2r8();
657 /* Start inner kernel loop */
658 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
661 /* Get j neighbor index, and coordinate index */
664 j_coord_offsetA = DIM*jnrA;
665 j_coord_offsetB = DIM*jnrB;
667 /* load j atom coordinates */
668 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
671 /* Calculate displacement vector */
672 dx00 = _fjsp_sub_v2r8(ix0,jx0);
673 dy00 = _fjsp_sub_v2r8(iy0,jy0);
674 dz00 = _fjsp_sub_v2r8(iz0,jz0);
675 dx10 = _fjsp_sub_v2r8(ix1,jx0);
676 dy10 = _fjsp_sub_v2r8(iy1,jy0);
677 dz10 = _fjsp_sub_v2r8(iz1,jz0);
678 dx20 = _fjsp_sub_v2r8(ix2,jx0);
679 dy20 = _fjsp_sub_v2r8(iy2,jy0);
680 dz20 = _fjsp_sub_v2r8(iz2,jz0);
681 dx30 = _fjsp_sub_v2r8(ix3,jx0);
682 dy30 = _fjsp_sub_v2r8(iy3,jy0);
683 dz30 = _fjsp_sub_v2r8(iz3,jz0);
685 /* Calculate squared distance and things based on it */
686 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
687 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
688 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
689 rsq30 = gmx_fjsp_calc_rsq_v2r8(dx30,dy30,dz30);
691 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
692 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
693 rinv30 = gmx_fjsp_invsqrt_v2r8(rsq30);
695 rinvsq00 = gmx_fjsp_inv_v2r8(rsq00);
696 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
697 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
698 rinvsq30 = _fjsp_mul_v2r8(rinv30,rinv30);
700 /* Load parameters for j particles */
701 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
702 vdwjidx0A = 2*vdwtype[jnrA+0];
703 vdwjidx0B = 2*vdwtype[jnrB+0];
705 fjx0 = _fjsp_setzero_v2r8();
706 fjy0 = _fjsp_setzero_v2r8();
707 fjz0 = _fjsp_setzero_v2r8();
709 /**************************
710 * CALCULATE INTERACTIONS *
711 **************************/
713 /* Compute parameters for interactions between i and j atoms */
714 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
715 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
717 /* LENNARD-JONES DISPERSION/REPULSION */
719 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
720 fvdw = _fjsp_mul_v2r8(_fjsp_msub_v2r8(c12_00,rinvsix,c6_00),_fjsp_mul_v2r8(rinvsix,rinvsq00));
724 /* Update vectorial force */
725 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
726 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
727 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
729 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
730 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
731 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
733 /**************************
734 * CALCULATE INTERACTIONS *
735 **************************/
737 /* Compute parameters for interactions between i and j atoms */
738 qq10 = _fjsp_mul_v2r8(iq1,jq0);
740 /* REACTION-FIELD ELECTROSTATICS */
741 felec = _fjsp_mul_v2r8(qq10,_fjsp_msub_v2r8(rinv10,rinvsq10,krf2));
745 /* Update vectorial force */
746 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
747 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
748 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
750 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
751 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
752 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
754 /**************************
755 * CALCULATE INTERACTIONS *
756 **************************/
758 /* Compute parameters for interactions between i and j atoms */
759 qq20 = _fjsp_mul_v2r8(iq2,jq0);
761 /* REACTION-FIELD ELECTROSTATICS */
762 felec = _fjsp_mul_v2r8(qq20,_fjsp_msub_v2r8(rinv20,rinvsq20,krf2));
766 /* Update vectorial force */
767 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
768 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
769 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
771 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
772 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
773 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
775 /**************************
776 * CALCULATE INTERACTIONS *
777 **************************/
779 /* Compute parameters for interactions between i and j atoms */
780 qq30 = _fjsp_mul_v2r8(iq3,jq0);
782 /* REACTION-FIELD ELECTROSTATICS */
783 felec = _fjsp_mul_v2r8(qq30,_fjsp_msub_v2r8(rinv30,rinvsq30,krf2));
787 /* Update vectorial force */
788 fix3 = _fjsp_madd_v2r8(dx30,fscal,fix3);
789 fiy3 = _fjsp_madd_v2r8(dy30,fscal,fiy3);
790 fiz3 = _fjsp_madd_v2r8(dz30,fscal,fiz3);
792 fjx0 = _fjsp_madd_v2r8(dx30,fscal,fjx0);
793 fjy0 = _fjsp_madd_v2r8(dy30,fscal,fjy0);
794 fjz0 = _fjsp_madd_v2r8(dz30,fscal,fjz0);
796 gmx_fjsp_decrement_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
798 /* Inner loop uses 123 flops */
805 j_coord_offsetA = DIM*jnrA;
807 /* load j atom coordinates */
808 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
811 /* Calculate displacement vector */
812 dx00 = _fjsp_sub_v2r8(ix0,jx0);
813 dy00 = _fjsp_sub_v2r8(iy0,jy0);
814 dz00 = _fjsp_sub_v2r8(iz0,jz0);
815 dx10 = _fjsp_sub_v2r8(ix1,jx0);
816 dy10 = _fjsp_sub_v2r8(iy1,jy0);
817 dz10 = _fjsp_sub_v2r8(iz1,jz0);
818 dx20 = _fjsp_sub_v2r8(ix2,jx0);
819 dy20 = _fjsp_sub_v2r8(iy2,jy0);
820 dz20 = _fjsp_sub_v2r8(iz2,jz0);
821 dx30 = _fjsp_sub_v2r8(ix3,jx0);
822 dy30 = _fjsp_sub_v2r8(iy3,jy0);
823 dz30 = _fjsp_sub_v2r8(iz3,jz0);
825 /* Calculate squared distance and things based on it */
826 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
827 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
828 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
829 rsq30 = gmx_fjsp_calc_rsq_v2r8(dx30,dy30,dz30);
831 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
832 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
833 rinv30 = gmx_fjsp_invsqrt_v2r8(rsq30);
835 rinvsq00 = gmx_fjsp_inv_v2r8(rsq00);
836 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
837 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
838 rinvsq30 = _fjsp_mul_v2r8(rinv30,rinv30);
840 /* Load parameters for j particles */
841 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
842 vdwjidx0A = 2*vdwtype[jnrA+0];
844 fjx0 = _fjsp_setzero_v2r8();
845 fjy0 = _fjsp_setzero_v2r8();
846 fjz0 = _fjsp_setzero_v2r8();
848 /**************************
849 * CALCULATE INTERACTIONS *
850 **************************/
852 /* Compute parameters for interactions between i and j atoms */
853 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
854 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
856 /* LENNARD-JONES DISPERSION/REPULSION */
858 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
859 fvdw = _fjsp_mul_v2r8(_fjsp_msub_v2r8(c12_00,rinvsix,c6_00),_fjsp_mul_v2r8(rinvsix,rinvsq00));
863 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
865 /* Update vectorial force */
866 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
867 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
868 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
870 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
871 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
872 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
874 /**************************
875 * CALCULATE INTERACTIONS *
876 **************************/
878 /* Compute parameters for interactions between i and j atoms */
879 qq10 = _fjsp_mul_v2r8(iq1,jq0);
881 /* REACTION-FIELD ELECTROSTATICS */
882 felec = _fjsp_mul_v2r8(qq10,_fjsp_msub_v2r8(rinv10,rinvsq10,krf2));
886 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
888 /* Update vectorial force */
889 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
890 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
891 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
893 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
894 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
895 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
897 /**************************
898 * CALCULATE INTERACTIONS *
899 **************************/
901 /* Compute parameters for interactions between i and j atoms */
902 qq20 = _fjsp_mul_v2r8(iq2,jq0);
904 /* REACTION-FIELD ELECTROSTATICS */
905 felec = _fjsp_mul_v2r8(qq20,_fjsp_msub_v2r8(rinv20,rinvsq20,krf2));
909 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
911 /* Update vectorial force */
912 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
913 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
914 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
916 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
917 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
918 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
920 /**************************
921 * CALCULATE INTERACTIONS *
922 **************************/
924 /* Compute parameters for interactions between i and j atoms */
925 qq30 = _fjsp_mul_v2r8(iq3,jq0);
927 /* REACTION-FIELD ELECTROSTATICS */
928 felec = _fjsp_mul_v2r8(qq30,_fjsp_msub_v2r8(rinv30,rinvsq30,krf2));
932 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
934 /* Update vectorial force */
935 fix3 = _fjsp_madd_v2r8(dx30,fscal,fix3);
936 fiy3 = _fjsp_madd_v2r8(dy30,fscal,fiy3);
937 fiz3 = _fjsp_madd_v2r8(dz30,fscal,fiz3);
939 fjx0 = _fjsp_madd_v2r8(dx30,fscal,fjx0);
940 fjy0 = _fjsp_madd_v2r8(dy30,fscal,fjy0);
941 fjz0 = _fjsp_madd_v2r8(dz30,fscal,fjz0);
943 gmx_fjsp_decrement_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fjx0,fjy0,fjz0);
945 /* Inner loop uses 123 flops */
948 /* End of innermost loop */
950 gmx_fjsp_update_iforce_4atom_swizzle_v2r8(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
951 f+i_coord_offset,fshift+i_shift_offset);
953 /* Increment number of inner iterations */
954 inneriter += j_index_end - j_index_start;
956 /* Outer loop uses 24 flops */
959 /* Increment number of outer iterations */
962 /* Update outer/inner flops */
964 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*123);