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36 * Note: this file was generated by the GROMACS sparc64_hpc_ace_double kernel generator.
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
47 #include "kernelutil_sparc64_hpc_ace_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwCSTab_GeomP1P1_VF_sparc64_hpc_ace_double
51 * Electrostatics interaction: GeneralizedBorn
52 * VdW interaction: CubicSplineTable
53 * Geometry: Particle-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecGB_VdwCSTab_GeomP1P1_VF_sparc64_hpc_ace_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
81 int vdwjidx0A,vdwjidx0B;
82 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
83 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
84 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
86 _fjsp_v2r8 vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,dvdaj,gbeps,twogbeps,dvdatmp;
87 _fjsp_v2r8 minushalf = gmx_fjsp_set1_v2r8(-0.5);
88 real *invsqrta,*dvda,*gbtab;
90 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
93 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
94 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
95 _fjsp_v2r8 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
98 _fjsp_v2r8 dummy_mask,cutoff_mask;
99 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
100 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
101 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
108 jindex = nlist->jindex;
110 shiftidx = nlist->shift;
112 shiftvec = fr->shift_vec[0];
113 fshift = fr->fshift[0];
114 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
115 charge = mdatoms->chargeA;
116 nvdwtype = fr->ntype;
118 vdwtype = mdatoms->typeA;
120 vftab = kernel_data->table_vdw->data;
121 vftabscale = gmx_fjsp_set1_v2r8(kernel_data->table_vdw->scale);
123 invsqrta = fr->invsqrta;
125 gbtabscale = gmx_fjsp_set1_v2r8(fr->gbtab.scale);
126 gbtab = fr->gbtab.data;
127 gbinvepsdiff = gmx_fjsp_set1_v2r8((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
129 /* Avoid stupid compiler warnings */
137 /* Start outer loop over neighborlists */
138 for(iidx=0; iidx<nri; iidx++)
140 /* Load shift vector for this list */
141 i_shift_offset = DIM*shiftidx[iidx];
143 /* Load limits for loop over neighbors */
144 j_index_start = jindex[iidx];
145 j_index_end = jindex[iidx+1];
147 /* Get outer coordinate index */
149 i_coord_offset = DIM*inr;
151 /* Load i particle coords and add shift vector */
152 gmx_fjsp_load_shift_and_1rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
154 fix0 = _fjsp_setzero_v2r8();
155 fiy0 = _fjsp_setzero_v2r8();
156 fiz0 = _fjsp_setzero_v2r8();
158 /* Load parameters for i particles */
159 iq0 = _fjsp_mul_v2r8(facel,gmx_fjsp_load1_v2r8(charge+inr+0));
160 isai0 = gmx_fjsp_load1_v2r8(invsqrta+inr+0);
161 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
163 /* Reset potential sums */
164 velecsum = _fjsp_setzero_v2r8();
165 vgbsum = _fjsp_setzero_v2r8();
166 vvdwsum = _fjsp_setzero_v2r8();
167 dvdasum = _fjsp_setzero_v2r8();
169 /* Start inner kernel loop */
170 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
173 /* Get j neighbor index, and coordinate index */
176 j_coord_offsetA = DIM*jnrA;
177 j_coord_offsetB = DIM*jnrB;
179 /* load j atom coordinates */
180 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
183 /* Calculate displacement vector */
184 dx00 = _fjsp_sub_v2r8(ix0,jx0);
185 dy00 = _fjsp_sub_v2r8(iy0,jy0);
186 dz00 = _fjsp_sub_v2r8(iz0,jz0);
188 /* Calculate squared distance and things based on it */
189 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
191 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
193 /* Load parameters for j particles */
194 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
195 isaj0 = gmx_fjsp_load_2real_swizzle_v2r8(invsqrta+jnrA+0,invsqrta+jnrB+0);
196 vdwjidx0A = 2*vdwtype[jnrA+0];
197 vdwjidx0B = 2*vdwtype[jnrB+0];
199 /**************************
200 * CALCULATE INTERACTIONS *
201 **************************/
203 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
205 /* Compute parameters for interactions between i and j atoms */
206 qq00 = _fjsp_mul_v2r8(iq0,jq0);
207 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
208 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
210 /* Calculate table index by multiplying r with table scale and truncate to integer */
211 rt = _fjsp_mul_v2r8(r00,vftabscale);
212 itab_tmp = _fjsp_dtox_v2r8(rt);
213 vfeps = _fjsp_sub_v2r8(rt, _fjsp_xtod_v2r8(itab_tmp));
214 twovfeps = _fjsp_add_v2r8(vfeps,vfeps);
215 _fjsp_store_v2r8(&vfconv.simd,itab_tmp);
220 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
221 isaprod = _fjsp_mul_v2r8(isai0,isaj0);
222 gbqqfactor = _fjsp_neg_v2r8(_fjsp_mul_v2r8(qq00,_fjsp_mul_v2r8(isaprod,gbinvepsdiff)));
223 gbscale = _fjsp_mul_v2r8(isaprod,gbtabscale);
225 /* Calculate generalized born table index - this is a separate table from the normal one,
226 * but we use the same procedure by multiplying r with scale and truncating to integer.
228 rt = _fjsp_mul_v2r8(r00,gbscale);
229 itab_tmp = _fjsp_dtox_v2r8(rt);
230 gbeps = _fjsp_sub_v2r8(rt,_fjsp_xtod_v2r8(itab_tmp));
231 _fjsp_store_v2r8(&gbconv.simd,itab_tmp);
233 Y = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] );
234 F = _fjsp_load_v2r8( gbtab + 4*gbconv.i[1] );
235 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
236 G = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] +2);
237 H = _fjsp_load_v2r8( gbtab + 4*gbconv.i[1] +2);
238 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
239 Fp = _fjsp_madd_v2r8(gbeps,_fjsp_madd_v2r8(gbeps,H,G),F);
240 VV = _fjsp_madd_v2r8(gbeps,Fp,Y);
241 vgb = _fjsp_mul_v2r8(gbqqfactor,VV);
243 twogbeps = _fjsp_add_v2r8(gbeps,gbeps);
244 FF = _fjsp_madd_v2r8(_fjsp_madd_v2r8(twogbeps,H,G),gbeps,Fp);
245 fgb = _fjsp_mul_v2r8(gbqqfactor,_fjsp_mul_v2r8(FF,gbscale));
246 dvdatmp = _fjsp_mul_v2r8(minushalf,_fjsp_madd_v2r8(fgb,r00,vgb));
247 dvdasum = _fjsp_add_v2r8(dvdasum,dvdatmp);
248 gmx_fjsp_increment_2real_swizzle_v2r8(dvda+jnrA,dvda+jnrB,_fjsp_mul_v2r8(dvdatmp,_fjsp_mul_v2r8(isaj0,isaj0)));
249 velec = _fjsp_mul_v2r8(qq00,rinv00);
250 felec = _fjsp_mul_v2r8(_fjsp_msub_v2r8(velec,rinv00,fgb),rinv00);
252 /* CUBIC SPLINE TABLE DISPERSION */
253 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] );
254 F = _fjsp_load_v2r8( vftab + vfconv.i[1] );
255 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
256 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 2 );
257 H = _fjsp_load_v2r8( vftab + vfconv.i[1] + 2 );
258 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
259 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
260 VV = _fjsp_madd_v2r8(vfeps,Fp,Y);
261 vvdw6 = _fjsp_mul_v2r8(c6_00,VV);
262 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
263 fvdw6 = _fjsp_mul_v2r8(c6_00,FF);
265 /* CUBIC SPLINE TABLE REPULSION */
266 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] + 4 );
267 F = _fjsp_load_v2r8( vftab + vfconv.i[1] + 4 );
268 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
269 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 6 );
270 H = _fjsp_load_v2r8( vftab + vfconv.i[1] + 6 );
271 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
272 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
273 VV = _fjsp_madd_v2r8(vfeps,Fp,Y);
274 vvdw12 = _fjsp_mul_v2r8(c12_00,VV);
275 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
276 fvdw12 = _fjsp_mul_v2r8(c12_00,FF);
277 vvdw = _fjsp_add_v2r8(vvdw12,vvdw6);
278 fvdw = _fjsp_neg_v2r8(_fjsp_mul_v2r8(_fjsp_add_v2r8(fvdw6,fvdw12),_fjsp_mul_v2r8(vftabscale,rinv00)));
280 /* Update potential sum for this i atom from the interaction with this j atom. */
281 velecsum = _fjsp_add_v2r8(velecsum,velec);
282 vgbsum = _fjsp_add_v2r8(vgbsum,vgb);
283 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
285 fscal = _fjsp_add_v2r8(felec,fvdw);
287 /* Update vectorial force */
288 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
289 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
290 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
292 gmx_fjsp_decrement_fma_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fscal,dx00,dy00,dz00);
294 /* Inner loop uses 95 flops */
301 j_coord_offsetA = DIM*jnrA;
303 /* load j atom coordinates */
304 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
307 /* Calculate displacement vector */
308 dx00 = _fjsp_sub_v2r8(ix0,jx0);
309 dy00 = _fjsp_sub_v2r8(iy0,jy0);
310 dz00 = _fjsp_sub_v2r8(iz0,jz0);
312 /* Calculate squared distance and things based on it */
313 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
315 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
317 /* Load parameters for j particles */
318 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
319 isaj0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),invsqrta+jnrA+0);
320 vdwjidx0A = 2*vdwtype[jnrA+0];
322 /**************************
323 * CALCULATE INTERACTIONS *
324 **************************/
326 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
328 /* Compute parameters for interactions between i and j atoms */
329 qq00 = _fjsp_mul_v2r8(iq0,jq0);
330 gmx_fjsp_load_1pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
332 /* Calculate table index by multiplying r with table scale and truncate to integer */
333 rt = _fjsp_mul_v2r8(r00,vftabscale);
334 itab_tmp = _fjsp_dtox_v2r8(rt);
335 vfeps = _fjsp_sub_v2r8(rt, _fjsp_xtod_v2r8(itab_tmp));
336 twovfeps = _fjsp_add_v2r8(vfeps,vfeps);
337 _fjsp_store_v2r8(&vfconv.simd,itab_tmp);
342 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
343 isaprod = _fjsp_mul_v2r8(isai0,isaj0);
344 gbqqfactor = _fjsp_neg_v2r8(_fjsp_mul_v2r8(qq00,_fjsp_mul_v2r8(isaprod,gbinvepsdiff)));
345 gbscale = _fjsp_mul_v2r8(isaprod,gbtabscale);
347 /* Calculate generalized born table index - this is a separate table from the normal one,
348 * but we use the same procedure by multiplying r with scale and truncating to integer.
350 rt = _fjsp_mul_v2r8(r00,gbscale);
351 itab_tmp = _fjsp_dtox_v2r8(rt);
352 gbeps = _fjsp_sub_v2r8(rt,_fjsp_xtod_v2r8(itab_tmp));
353 _fjsp_store_v2r8(&gbconv.simd,itab_tmp);
355 Y = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] );
356 F = _fjsp_setzero_v2r8();
357 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
358 G = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] +2);
359 H = _fjsp_setzero_v2r8();
360 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
361 Fp = _fjsp_madd_v2r8(gbeps,_fjsp_madd_v2r8(gbeps,H,G),F);
362 VV = _fjsp_madd_v2r8(gbeps,Fp,Y);
363 vgb = _fjsp_mul_v2r8(gbqqfactor,VV);
365 twogbeps = _fjsp_add_v2r8(gbeps,gbeps);
366 FF = _fjsp_madd_v2r8(_fjsp_madd_v2r8(twogbeps,H,G),gbeps,Fp);
367 fgb = _fjsp_mul_v2r8(gbqqfactor,_fjsp_mul_v2r8(FF,gbscale));
368 dvdatmp = _fjsp_mul_v2r8(minushalf,_fjsp_madd_v2r8(fgb,r00,vgb));
369 dvdasum = _fjsp_add_v2r8(dvdasum,dvdatmp);
370 gmx_fjsp_increment_1real_v2r8(dvda+jnrA,_fjsp_mul_v2r8(dvdatmp,_fjsp_mul_v2r8(isaj0,isaj0)));
371 velec = _fjsp_mul_v2r8(qq00,rinv00);
372 felec = _fjsp_mul_v2r8(_fjsp_msub_v2r8(velec,rinv00,fgb),rinv00);
374 /* CUBIC SPLINE TABLE DISPERSION */
375 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] );
376 F = _fjsp_setzero_v2r8();
377 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
378 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 2 );
379 H = _fjsp_setzero_v2r8();
380 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
381 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
382 VV = _fjsp_madd_v2r8(vfeps,Fp,Y);
383 vvdw6 = _fjsp_mul_v2r8(c6_00,VV);
384 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
385 fvdw6 = _fjsp_mul_v2r8(c6_00,FF);
387 /* CUBIC SPLINE TABLE REPULSION */
388 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] + 4 );
389 F = _fjsp_setzero_v2r8();
390 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
391 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 6 );
392 H = _fjsp_setzero_v2r8();
393 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
394 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
395 VV = _fjsp_madd_v2r8(vfeps,Fp,Y);
396 vvdw12 = _fjsp_mul_v2r8(c12_00,VV);
397 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
398 fvdw12 = _fjsp_mul_v2r8(c12_00,FF);
399 vvdw = _fjsp_add_v2r8(vvdw12,vvdw6);
400 fvdw = _fjsp_neg_v2r8(_fjsp_mul_v2r8(_fjsp_add_v2r8(fvdw6,fvdw12),_fjsp_mul_v2r8(vftabscale,rinv00)));
402 /* Update potential sum for this i atom from the interaction with this j atom. */
403 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
404 velecsum = _fjsp_add_v2r8(velecsum,velec);
405 vgb = _fjsp_unpacklo_v2r8(vgb,_fjsp_setzero_v2r8());
406 vgbsum = _fjsp_add_v2r8(vgbsum,vgb);
407 vvdw = _fjsp_unpacklo_v2r8(vvdw,_fjsp_setzero_v2r8());
408 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
410 fscal = _fjsp_add_v2r8(felec,fvdw);
412 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
414 /* Update vectorial force */
415 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
416 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
417 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
419 gmx_fjsp_decrement_fma_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fscal,dx00,dy00,dz00);
421 /* Inner loop uses 95 flops */
424 /* End of innermost loop */
426 gmx_fjsp_update_iforce_1atom_swizzle_v2r8(fix0,fiy0,fiz0,
427 f+i_coord_offset,fshift+i_shift_offset);
430 /* Update potential energies */
431 gmx_fjsp_update_1pot_v2r8(velecsum,kernel_data->energygrp_elec+ggid);
432 gmx_fjsp_update_1pot_v2r8(vgbsum,kernel_data->energygrp_polarization+ggid);
433 gmx_fjsp_update_1pot_v2r8(vvdwsum,kernel_data->energygrp_vdw+ggid);
434 dvdasum = _fjsp_mul_v2r8(dvdasum, _fjsp_mul_v2r8(isai0,isai0));
435 gmx_fjsp_update_1pot_v2r8(dvdasum,dvda+inr);
437 /* Increment number of inner iterations */
438 inneriter += j_index_end - j_index_start;
440 /* Outer loop uses 10 flops */
443 /* Increment number of outer iterations */
446 /* Update outer/inner flops */
448 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*10 + inneriter*95);
451 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwCSTab_GeomP1P1_F_sparc64_hpc_ace_double
452 * Electrostatics interaction: GeneralizedBorn
453 * VdW interaction: CubicSplineTable
454 * Geometry: Particle-Particle
455 * Calculate force/pot: Force
458 nb_kernel_ElecGB_VdwCSTab_GeomP1P1_F_sparc64_hpc_ace_double
459 (t_nblist * gmx_restrict nlist,
460 rvec * gmx_restrict xx,
461 rvec * gmx_restrict ff,
462 t_forcerec * gmx_restrict fr,
463 t_mdatoms * gmx_restrict mdatoms,
464 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
465 t_nrnb * gmx_restrict nrnb)
467 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
468 * just 0 for non-waters.
469 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
470 * jnr indices corresponding to data put in the four positions in the SIMD register.
472 int i_shift_offset,i_coord_offset,outeriter,inneriter;
473 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
475 int j_coord_offsetA,j_coord_offsetB;
476 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
478 real *shiftvec,*fshift,*x,*f;
479 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
481 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
482 int vdwjidx0A,vdwjidx0B;
483 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
484 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
485 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
487 _fjsp_v2r8 vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,dvdaj,gbeps,twogbeps,dvdatmp;
488 _fjsp_v2r8 minushalf = gmx_fjsp_set1_v2r8(-0.5);
489 real *invsqrta,*dvda,*gbtab;
491 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
494 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
495 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
496 _fjsp_v2r8 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
499 _fjsp_v2r8 dummy_mask,cutoff_mask;
500 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
501 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
502 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
509 jindex = nlist->jindex;
511 shiftidx = nlist->shift;
513 shiftvec = fr->shift_vec[0];
514 fshift = fr->fshift[0];
515 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
516 charge = mdatoms->chargeA;
517 nvdwtype = fr->ntype;
519 vdwtype = mdatoms->typeA;
521 vftab = kernel_data->table_vdw->data;
522 vftabscale = gmx_fjsp_set1_v2r8(kernel_data->table_vdw->scale);
524 invsqrta = fr->invsqrta;
526 gbtabscale = gmx_fjsp_set1_v2r8(fr->gbtab.scale);
527 gbtab = fr->gbtab.data;
528 gbinvepsdiff = gmx_fjsp_set1_v2r8((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
530 /* Avoid stupid compiler warnings */
538 /* Start outer loop over neighborlists */
539 for(iidx=0; iidx<nri; iidx++)
541 /* Load shift vector for this list */
542 i_shift_offset = DIM*shiftidx[iidx];
544 /* Load limits for loop over neighbors */
545 j_index_start = jindex[iidx];
546 j_index_end = jindex[iidx+1];
548 /* Get outer coordinate index */
550 i_coord_offset = DIM*inr;
552 /* Load i particle coords and add shift vector */
553 gmx_fjsp_load_shift_and_1rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
555 fix0 = _fjsp_setzero_v2r8();
556 fiy0 = _fjsp_setzero_v2r8();
557 fiz0 = _fjsp_setzero_v2r8();
559 /* Load parameters for i particles */
560 iq0 = _fjsp_mul_v2r8(facel,gmx_fjsp_load1_v2r8(charge+inr+0));
561 isai0 = gmx_fjsp_load1_v2r8(invsqrta+inr+0);
562 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
564 dvdasum = _fjsp_setzero_v2r8();
566 /* Start inner kernel loop */
567 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
570 /* Get j neighbor index, and coordinate index */
573 j_coord_offsetA = DIM*jnrA;
574 j_coord_offsetB = DIM*jnrB;
576 /* load j atom coordinates */
577 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
580 /* Calculate displacement vector */
581 dx00 = _fjsp_sub_v2r8(ix0,jx0);
582 dy00 = _fjsp_sub_v2r8(iy0,jy0);
583 dz00 = _fjsp_sub_v2r8(iz0,jz0);
585 /* Calculate squared distance and things based on it */
586 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
588 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
590 /* Load parameters for j particles */
591 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
592 isaj0 = gmx_fjsp_load_2real_swizzle_v2r8(invsqrta+jnrA+0,invsqrta+jnrB+0);
593 vdwjidx0A = 2*vdwtype[jnrA+0];
594 vdwjidx0B = 2*vdwtype[jnrB+0];
596 /**************************
597 * CALCULATE INTERACTIONS *
598 **************************/
600 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
602 /* Compute parameters for interactions between i and j atoms */
603 qq00 = _fjsp_mul_v2r8(iq0,jq0);
604 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
605 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
607 /* Calculate table index by multiplying r with table scale and truncate to integer */
608 rt = _fjsp_mul_v2r8(r00,vftabscale);
609 itab_tmp = _fjsp_dtox_v2r8(rt);
610 vfeps = _fjsp_sub_v2r8(rt, _fjsp_xtod_v2r8(itab_tmp));
611 twovfeps = _fjsp_add_v2r8(vfeps,vfeps);
612 _fjsp_store_v2r8(&vfconv.simd,itab_tmp);
617 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
618 isaprod = _fjsp_mul_v2r8(isai0,isaj0);
619 gbqqfactor = _fjsp_neg_v2r8(_fjsp_mul_v2r8(qq00,_fjsp_mul_v2r8(isaprod,gbinvepsdiff)));
620 gbscale = _fjsp_mul_v2r8(isaprod,gbtabscale);
622 /* Calculate generalized born table index - this is a separate table from the normal one,
623 * but we use the same procedure by multiplying r with scale and truncating to integer.
625 rt = _fjsp_mul_v2r8(r00,gbscale);
626 itab_tmp = _fjsp_dtox_v2r8(rt);
627 gbeps = _fjsp_sub_v2r8(rt,_fjsp_xtod_v2r8(itab_tmp));
628 _fjsp_store_v2r8(&gbconv.simd,itab_tmp);
630 Y = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] );
631 F = _fjsp_load_v2r8( gbtab + 4*gbconv.i[1] );
632 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
633 G = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] +2);
634 H = _fjsp_load_v2r8( gbtab + 4*gbconv.i[1] +2);
635 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
636 Fp = _fjsp_madd_v2r8(gbeps,_fjsp_madd_v2r8(gbeps,H,G),F);
637 VV = _fjsp_madd_v2r8(gbeps,Fp,Y);
638 vgb = _fjsp_mul_v2r8(gbqqfactor,VV);
640 twogbeps = _fjsp_add_v2r8(gbeps,gbeps);
641 FF = _fjsp_madd_v2r8(_fjsp_madd_v2r8(twogbeps,H,G),gbeps,Fp);
642 fgb = _fjsp_mul_v2r8(gbqqfactor,_fjsp_mul_v2r8(FF,gbscale));
643 dvdatmp = _fjsp_mul_v2r8(minushalf,_fjsp_madd_v2r8(fgb,r00,vgb));
644 dvdasum = _fjsp_add_v2r8(dvdasum,dvdatmp);
645 gmx_fjsp_increment_2real_swizzle_v2r8(dvda+jnrA,dvda+jnrB,_fjsp_mul_v2r8(dvdatmp,_fjsp_mul_v2r8(isaj0,isaj0)));
646 velec = _fjsp_mul_v2r8(qq00,rinv00);
647 felec = _fjsp_mul_v2r8(_fjsp_msub_v2r8(velec,rinv00,fgb),rinv00);
649 /* CUBIC SPLINE TABLE DISPERSION */
650 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] );
651 F = _fjsp_load_v2r8( vftab + vfconv.i[1] );
652 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
653 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 2 );
654 H = _fjsp_load_v2r8( vftab + vfconv.i[1] + 2 );
655 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
656 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
657 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
658 fvdw6 = _fjsp_mul_v2r8(c6_00,FF);
660 /* CUBIC SPLINE TABLE REPULSION */
661 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] + 4 );
662 F = _fjsp_load_v2r8( vftab + vfconv.i[1] + 4 );
663 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
664 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 6 );
665 H = _fjsp_load_v2r8( vftab + vfconv.i[1] + 6 );
666 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
667 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
668 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
669 fvdw12 = _fjsp_mul_v2r8(c12_00,FF);
670 fvdw = _fjsp_neg_v2r8(_fjsp_mul_v2r8(_fjsp_add_v2r8(fvdw6,fvdw12),_fjsp_mul_v2r8(vftabscale,rinv00)));
672 fscal = _fjsp_add_v2r8(felec,fvdw);
674 /* Update vectorial force */
675 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
676 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
677 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
679 gmx_fjsp_decrement_fma_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fscal,dx00,dy00,dz00);
681 /* Inner loop uses 85 flops */
688 j_coord_offsetA = DIM*jnrA;
690 /* load j atom coordinates */
691 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
694 /* Calculate displacement vector */
695 dx00 = _fjsp_sub_v2r8(ix0,jx0);
696 dy00 = _fjsp_sub_v2r8(iy0,jy0);
697 dz00 = _fjsp_sub_v2r8(iz0,jz0);
699 /* Calculate squared distance and things based on it */
700 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
702 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
704 /* Load parameters for j particles */
705 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
706 isaj0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),invsqrta+jnrA+0);
707 vdwjidx0A = 2*vdwtype[jnrA+0];
709 /**************************
710 * CALCULATE INTERACTIONS *
711 **************************/
713 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
715 /* Compute parameters for interactions between i and j atoms */
716 qq00 = _fjsp_mul_v2r8(iq0,jq0);
717 gmx_fjsp_load_1pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
719 /* Calculate table index by multiplying r with table scale and truncate to integer */
720 rt = _fjsp_mul_v2r8(r00,vftabscale);
721 itab_tmp = _fjsp_dtox_v2r8(rt);
722 vfeps = _fjsp_sub_v2r8(rt, _fjsp_xtod_v2r8(itab_tmp));
723 twovfeps = _fjsp_add_v2r8(vfeps,vfeps);
724 _fjsp_store_v2r8(&vfconv.simd,itab_tmp);
729 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
730 isaprod = _fjsp_mul_v2r8(isai0,isaj0);
731 gbqqfactor = _fjsp_neg_v2r8(_fjsp_mul_v2r8(qq00,_fjsp_mul_v2r8(isaprod,gbinvepsdiff)));
732 gbscale = _fjsp_mul_v2r8(isaprod,gbtabscale);
734 /* Calculate generalized born table index - this is a separate table from the normal one,
735 * but we use the same procedure by multiplying r with scale and truncating to integer.
737 rt = _fjsp_mul_v2r8(r00,gbscale);
738 itab_tmp = _fjsp_dtox_v2r8(rt);
739 gbeps = _fjsp_sub_v2r8(rt,_fjsp_xtod_v2r8(itab_tmp));
740 _fjsp_store_v2r8(&gbconv.simd,itab_tmp);
742 Y = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] );
743 F = _fjsp_setzero_v2r8();
744 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
745 G = _fjsp_load_v2r8( gbtab + 4*gbconv.i[0] +2);
746 H = _fjsp_setzero_v2r8();
747 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
748 Fp = _fjsp_madd_v2r8(gbeps,_fjsp_madd_v2r8(gbeps,H,G),F);
749 VV = _fjsp_madd_v2r8(gbeps,Fp,Y);
750 vgb = _fjsp_mul_v2r8(gbqqfactor,VV);
752 twogbeps = _fjsp_add_v2r8(gbeps,gbeps);
753 FF = _fjsp_madd_v2r8(_fjsp_madd_v2r8(twogbeps,H,G),gbeps,Fp);
754 fgb = _fjsp_mul_v2r8(gbqqfactor,_fjsp_mul_v2r8(FF,gbscale));
755 dvdatmp = _fjsp_mul_v2r8(minushalf,_fjsp_madd_v2r8(fgb,r00,vgb));
756 dvdasum = _fjsp_add_v2r8(dvdasum,dvdatmp);
757 gmx_fjsp_increment_1real_v2r8(dvda+jnrA,_fjsp_mul_v2r8(dvdatmp,_fjsp_mul_v2r8(isaj0,isaj0)));
758 velec = _fjsp_mul_v2r8(qq00,rinv00);
759 felec = _fjsp_mul_v2r8(_fjsp_msub_v2r8(velec,rinv00,fgb),rinv00);
761 /* CUBIC SPLINE TABLE DISPERSION */
762 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] );
763 F = _fjsp_setzero_v2r8();
764 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
765 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 2 );
766 H = _fjsp_setzero_v2r8();
767 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
768 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
769 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
770 fvdw6 = _fjsp_mul_v2r8(c6_00,FF);
772 /* CUBIC SPLINE TABLE REPULSION */
773 Y = _fjsp_load_v2r8( vftab + vfconv.i[0] + 4 );
774 F = _fjsp_setzero_v2r8();
775 GMX_FJSP_TRANSPOSE2_V2R8(Y,F);
776 G = _fjsp_load_v2r8( vftab + vfconv.i[0] + 6 );
777 H = _fjsp_setzero_v2r8();
778 GMX_FJSP_TRANSPOSE2_V2R8(G,H);
779 Fp = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(H,vfeps,G),F);
780 FF = _fjsp_madd_v2r8(vfeps,_fjsp_madd_v2r8(twovfeps,H,G),Fp);
781 fvdw12 = _fjsp_mul_v2r8(c12_00,FF);
782 fvdw = _fjsp_neg_v2r8(_fjsp_mul_v2r8(_fjsp_add_v2r8(fvdw6,fvdw12),_fjsp_mul_v2r8(vftabscale,rinv00)));
784 fscal = _fjsp_add_v2r8(felec,fvdw);
786 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
788 /* Update vectorial force */
789 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
790 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
791 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
793 gmx_fjsp_decrement_fma_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fscal,dx00,dy00,dz00);
795 /* Inner loop uses 85 flops */
798 /* End of innermost loop */
800 gmx_fjsp_update_iforce_1atom_swizzle_v2r8(fix0,fiy0,fiz0,
801 f+i_coord_offset,fshift+i_shift_offset);
803 dvdasum = _fjsp_mul_v2r8(dvdasum, _fjsp_mul_v2r8(isai0,isai0));
804 gmx_fjsp_update_1pot_v2r8(dvdasum,dvda+inr);
806 /* Increment number of inner iterations */
807 inneriter += j_index_end - j_index_start;
809 /* Outer loop uses 7 flops */
812 /* Increment number of outer iterations */
815 /* Update outer/inner flops */
817 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*7 + inneriter*85);