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36 * Note: this file was generated by the GROMACS sparc64_hpc_ace_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
49 #include "kernelutil_sparc64_hpc_ace_double.h"
52 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_VF_sparc64_hpc_ace_double
53 * Electrostatics interaction: Ewald
54 * VdW interaction: LJEwald
55 * Geometry: Water3-Particle
56 * Calculate force/pot: PotentialAndForce
59 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_VF_sparc64_hpc_ace_double
60 (t_nblist * gmx_restrict nlist,
61 rvec * gmx_restrict xx,
62 rvec * gmx_restrict ff,
63 t_forcerec * gmx_restrict fr,
64 t_mdatoms * gmx_restrict mdatoms,
65 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
66 t_nrnb * gmx_restrict nrnb)
68 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
69 * just 0 for non-waters.
70 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
71 * jnr indices corresponding to data put in the four positions in the SIMD register.
73 int i_shift_offset,i_coord_offset,outeriter,inneriter;
74 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
76 int j_coord_offsetA,j_coord_offsetB;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
82 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
84 _fjsp_v2r8 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
86 _fjsp_v2r8 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
87 int vdwjidx0A,vdwjidx0B;
88 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
89 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
90 _fjsp_v2r8 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
91 _fjsp_v2r8 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
92 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
95 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
98 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
99 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
100 _fjsp_v2r8 c6grid_00;
101 _fjsp_v2r8 c6grid_10;
102 _fjsp_v2r8 c6grid_20;
104 _fjsp_v2r8 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
105 _fjsp_v2r8 one_half = gmx_fjsp_set1_v2r8(0.5);
106 _fjsp_v2r8 minus_one = gmx_fjsp_set1_v2r8(-1.0);
107 _fjsp_v2r8 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
110 _fjsp_v2r8 dummy_mask,cutoff_mask;
111 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
112 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
113 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
120 jindex = nlist->jindex;
122 shiftidx = nlist->shift;
124 shiftvec = fr->shift_vec[0];
125 fshift = fr->fshift[0];
126 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
127 charge = mdatoms->chargeA;
128 nvdwtype = fr->ntype;
130 vdwtype = mdatoms->typeA;
131 vdwgridparam = fr->ljpme_c6grid;
132 sh_lj_ewald = gmx_fjsp_set1_v2r8(fr->ic->sh_lj_ewald);
133 ewclj = gmx_fjsp_set1_v2r8(fr->ewaldcoeff_lj);
134 ewclj2 = _fjsp_mul_v2r8(minus_one,_fjsp_mul_v2r8(ewclj,ewclj));
136 sh_ewald = gmx_fjsp_set1_v2r8(fr->ic->sh_ewald);
137 ewtab = fr->ic->tabq_coul_FDV0;
138 ewtabscale = gmx_fjsp_set1_v2r8(fr->ic->tabq_scale);
139 ewtabhalfspace = gmx_fjsp_set1_v2r8(0.5/fr->ic->tabq_scale);
141 /* Setup water-specific parameters */
142 inr = nlist->iinr[0];
143 iq0 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+0]));
144 iq1 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+1]));
145 iq2 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+2]));
146 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
148 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
149 rcutoff_scalar = fr->rcoulomb;
150 rcutoff = gmx_fjsp_set1_v2r8(rcutoff_scalar);
151 rcutoff2 = _fjsp_mul_v2r8(rcutoff,rcutoff);
153 sh_vdw_invrcut6 = gmx_fjsp_set1_v2r8(fr->ic->sh_invrc6);
154 rvdw = gmx_fjsp_set1_v2r8(fr->rvdw);
156 /* Avoid stupid compiler warnings */
164 /* Start outer loop over neighborlists */
165 for(iidx=0; iidx<nri; iidx++)
167 /* Load shift vector for this list */
168 i_shift_offset = DIM*shiftidx[iidx];
170 /* Load limits for loop over neighbors */
171 j_index_start = jindex[iidx];
172 j_index_end = jindex[iidx+1];
174 /* Get outer coordinate index */
176 i_coord_offset = DIM*inr;
178 /* Load i particle coords and add shift vector */
179 gmx_fjsp_load_shift_and_3rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,
180 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
182 fix0 = _fjsp_setzero_v2r8();
183 fiy0 = _fjsp_setzero_v2r8();
184 fiz0 = _fjsp_setzero_v2r8();
185 fix1 = _fjsp_setzero_v2r8();
186 fiy1 = _fjsp_setzero_v2r8();
187 fiz1 = _fjsp_setzero_v2r8();
188 fix2 = _fjsp_setzero_v2r8();
189 fiy2 = _fjsp_setzero_v2r8();
190 fiz2 = _fjsp_setzero_v2r8();
192 /* Reset potential sums */
193 velecsum = _fjsp_setzero_v2r8();
194 vvdwsum = _fjsp_setzero_v2r8();
196 /* Start inner kernel loop */
197 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
200 /* Get j neighbor index, and coordinate index */
203 j_coord_offsetA = DIM*jnrA;
204 j_coord_offsetB = DIM*jnrB;
206 /* load j atom coordinates */
207 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
210 /* Calculate displacement vector */
211 dx00 = _fjsp_sub_v2r8(ix0,jx0);
212 dy00 = _fjsp_sub_v2r8(iy0,jy0);
213 dz00 = _fjsp_sub_v2r8(iz0,jz0);
214 dx10 = _fjsp_sub_v2r8(ix1,jx0);
215 dy10 = _fjsp_sub_v2r8(iy1,jy0);
216 dz10 = _fjsp_sub_v2r8(iz1,jz0);
217 dx20 = _fjsp_sub_v2r8(ix2,jx0);
218 dy20 = _fjsp_sub_v2r8(iy2,jy0);
219 dz20 = _fjsp_sub_v2r8(iz2,jz0);
221 /* Calculate squared distance and things based on it */
222 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
223 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
224 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
226 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
227 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
228 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
230 rinvsq00 = _fjsp_mul_v2r8(rinv00,rinv00);
231 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
232 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
234 /* Load parameters for j particles */
235 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
236 vdwjidx0A = 2*vdwtype[jnrA+0];
237 vdwjidx0B = 2*vdwtype[jnrB+0];
239 fjx0 = _fjsp_setzero_v2r8();
240 fjy0 = _fjsp_setzero_v2r8();
241 fjz0 = _fjsp_setzero_v2r8();
243 /**************************
244 * CALCULATE INTERACTIONS *
245 **************************/
247 if (gmx_fjsp_any_lt_v2r8(rsq00,rcutoff2))
250 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
252 /* Compute parameters for interactions between i and j atoms */
253 qq00 = _fjsp_mul_v2r8(iq0,jq0);
254 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
255 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
257 c6grid_00 = gmx_fjsp_load_2real_swizzle_v2r8(vdwgridparam+vdwioffset0+vdwjidx0A,
258 vdwgridparam+vdwioffset0+vdwjidx0B);
260 /* EWALD ELECTROSTATICS */
262 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
263 ewrt = _fjsp_mul_v2r8(r00,ewtabscale);
264 itab_tmp = _fjsp_dtox_v2r8(ewrt);
265 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
266 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
268 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
269 ewtabD = _fjsp_load_v2r8( ewtab + 4*ewconv.i[1] );
270 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
271 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
272 ewtabFn = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[1] +2);
273 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
274 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
275 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
276 velec = _fjsp_mul_v2r8(qq00,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv00,sh_ewald),velec));
277 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq00,rinv00),_fjsp_sub_v2r8(rinvsq00,felec));
279 /* Analytical LJ-PME */
280 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
281 ewcljrsq = _fjsp_mul_v2r8(ewclj2,rsq00);
282 ewclj6 = _fjsp_mul_v2r8(ewclj2,_fjsp_mul_v2r8(ewclj2,ewclj2));
283 exponent = gmx_simd_exp_d(-ewcljrsq);
284 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
285 poly = _fjsp_mul_v2r8(exponent,_fjsp_madd_v2r8(_fjsp_mul_v2r8(ewcljrsq,ewcljrsq),one_half,_fjsp_sub_v2r8(one,ewcljrsq)));
286 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
287 vvdw6 = _fjsp_mul_v2r8(_fjsp_madd_v2r8(-c6grid_00,_fjsp_sub_v2r8(one,poly),c6_00),rinvsix);
288 vvdw12 = _fjsp_mul_v2r8(c12_00,_fjsp_mul_v2r8(rinvsix,rinvsix));
289 vvdw = _fjsp_msub_v2r8(_fjsp_nmsub_v2r8(c12_00,_fjsp_mul_v2r8(sh_vdw_invrcut6,sh_vdw_invrcut6),vvdw12),one_twelfth,
290 _fjsp_mul_v2r8(_fjsp_sub_v2r8(vvdw6,_fjsp_madd_v2r8(c6grid_00,sh_lj_ewald,_fjsp_mul_v2r8(c6_00,sh_vdw_invrcut6))),one_sixth));
291 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
292 fvdw = _fjsp_mul_v2r8(_fjsp_add_v2r8(vvdw12,_fjsp_msub_v2r8(_fjsp_mul_v2r8(c6grid_00,one_sixth),_fjsp_mul_v2r8(exponent,ewclj6),vvdw6)),rinvsq00);
294 cutoff_mask = _fjsp_cmplt_v2r8(rsq00,rcutoff2);
296 /* Update potential sum for this i atom from the interaction with this j atom. */
297 velec = _fjsp_and_v2r8(velec,cutoff_mask);
298 velecsum = _fjsp_add_v2r8(velecsum,velec);
299 vvdw = _fjsp_and_v2r8(vvdw,cutoff_mask);
300 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
302 fscal = _fjsp_add_v2r8(felec,fvdw);
304 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
306 /* Update vectorial force */
307 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
308 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
309 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
311 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
312 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
313 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
317 /**************************
318 * CALCULATE INTERACTIONS *
319 **************************/
321 if (gmx_fjsp_any_lt_v2r8(rsq10,rcutoff2))
324 r10 = _fjsp_mul_v2r8(rsq10,rinv10);
326 /* Compute parameters for interactions between i and j atoms */
327 qq10 = _fjsp_mul_v2r8(iq1,jq0);
329 /* EWALD ELECTROSTATICS */
331 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
332 ewrt = _fjsp_mul_v2r8(r10,ewtabscale);
333 itab_tmp = _fjsp_dtox_v2r8(ewrt);
334 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
335 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
337 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
338 ewtabD = _fjsp_load_v2r8( ewtab + 4*ewconv.i[1] );
339 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
340 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
341 ewtabFn = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[1] +2);
342 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
343 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
344 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
345 velec = _fjsp_mul_v2r8(qq10,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv10,sh_ewald),velec));
346 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq10,rinv10),_fjsp_sub_v2r8(rinvsq10,felec));
348 cutoff_mask = _fjsp_cmplt_v2r8(rsq10,rcutoff2);
350 /* Update potential sum for this i atom from the interaction with this j atom. */
351 velec = _fjsp_and_v2r8(velec,cutoff_mask);
352 velecsum = _fjsp_add_v2r8(velecsum,velec);
356 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
358 /* Update vectorial force */
359 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
360 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
361 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
363 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
364 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
365 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
369 /**************************
370 * CALCULATE INTERACTIONS *
371 **************************/
373 if (gmx_fjsp_any_lt_v2r8(rsq20,rcutoff2))
376 r20 = _fjsp_mul_v2r8(rsq20,rinv20);
378 /* Compute parameters for interactions between i and j atoms */
379 qq20 = _fjsp_mul_v2r8(iq2,jq0);
381 /* EWALD ELECTROSTATICS */
383 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
384 ewrt = _fjsp_mul_v2r8(r20,ewtabscale);
385 itab_tmp = _fjsp_dtox_v2r8(ewrt);
386 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
387 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
389 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
390 ewtabD = _fjsp_load_v2r8( ewtab + 4*ewconv.i[1] );
391 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
392 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
393 ewtabFn = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[1] +2);
394 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
395 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
396 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
397 velec = _fjsp_mul_v2r8(qq20,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv20,sh_ewald),velec));
398 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq20,rinv20),_fjsp_sub_v2r8(rinvsq20,felec));
400 cutoff_mask = _fjsp_cmplt_v2r8(rsq20,rcutoff2);
402 /* Update potential sum for this i atom from the interaction with this j atom. */
403 velec = _fjsp_and_v2r8(velec,cutoff_mask);
404 velecsum = _fjsp_add_v2r8(velecsum,velec);
408 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
410 /* Update vectorial force */
411 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
412 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
413 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
415 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
416 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
417 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
421 gmx_fjsp_decrement_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
423 /* Inner loop uses 180 flops */
430 j_coord_offsetA = DIM*jnrA;
432 /* load j atom coordinates */
433 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
436 /* Calculate displacement vector */
437 dx00 = _fjsp_sub_v2r8(ix0,jx0);
438 dy00 = _fjsp_sub_v2r8(iy0,jy0);
439 dz00 = _fjsp_sub_v2r8(iz0,jz0);
440 dx10 = _fjsp_sub_v2r8(ix1,jx0);
441 dy10 = _fjsp_sub_v2r8(iy1,jy0);
442 dz10 = _fjsp_sub_v2r8(iz1,jz0);
443 dx20 = _fjsp_sub_v2r8(ix2,jx0);
444 dy20 = _fjsp_sub_v2r8(iy2,jy0);
445 dz20 = _fjsp_sub_v2r8(iz2,jz0);
447 /* Calculate squared distance and things based on it */
448 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
449 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
450 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
452 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
453 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
454 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
456 rinvsq00 = _fjsp_mul_v2r8(rinv00,rinv00);
457 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
458 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
460 /* Load parameters for j particles */
461 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
462 vdwjidx0A = 2*vdwtype[jnrA+0];
464 fjx0 = _fjsp_setzero_v2r8();
465 fjy0 = _fjsp_setzero_v2r8();
466 fjz0 = _fjsp_setzero_v2r8();
468 /**************************
469 * CALCULATE INTERACTIONS *
470 **************************/
472 if (gmx_fjsp_any_lt_v2r8(rsq00,rcutoff2))
475 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
477 /* Compute parameters for interactions between i and j atoms */
478 qq00 = _fjsp_mul_v2r8(iq0,jq0);
479 gmx_fjsp_load_1pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
481 c6grid_00 = gmx_fjsp_load_1real_swizzle_v2r8(vdwgridparam+vdwioffset0+vdwjidx0A);
483 /* EWALD ELECTROSTATICS */
485 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
486 ewrt = _fjsp_mul_v2r8(r00,ewtabscale);
487 itab_tmp = _fjsp_dtox_v2r8(ewrt);
488 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
489 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
491 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
492 ewtabD = _fjsp_setzero_v2r8();
493 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
494 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
495 ewtabFn = _fjsp_setzero_v2r8();
496 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
497 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
498 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
499 velec = _fjsp_mul_v2r8(qq00,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv00,sh_ewald),velec));
500 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq00,rinv00),_fjsp_sub_v2r8(rinvsq00,felec));
502 /* Analytical LJ-PME */
503 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
504 ewcljrsq = _fjsp_mul_v2r8(ewclj2,rsq00);
505 ewclj6 = _fjsp_mul_v2r8(ewclj2,_fjsp_mul_v2r8(ewclj2,ewclj2));
506 exponent = gmx_simd_exp_d(-ewcljrsq);
507 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
508 poly = _fjsp_mul_v2r8(exponent,_fjsp_madd_v2r8(_fjsp_mul_v2r8(ewcljrsq,ewcljrsq),one_half,_fjsp_sub_v2r8(one,ewcljrsq)));
509 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
510 vvdw6 = _fjsp_mul_v2r8(_fjsp_madd_v2r8(-c6grid_00,_fjsp_sub_v2r8(one,poly),c6_00),rinvsix);
511 vvdw12 = _fjsp_mul_v2r8(c12_00,_fjsp_mul_v2r8(rinvsix,rinvsix));
512 vvdw = _fjsp_msub_v2r8(_fjsp_nmsub_v2r8(c12_00,_fjsp_mul_v2r8(sh_vdw_invrcut6,sh_vdw_invrcut6),vvdw12),one_twelfth,
513 _fjsp_mul_v2r8(_fjsp_sub_v2r8(vvdw6,_fjsp_madd_v2r8(c6grid_00,sh_lj_ewald,_fjsp_mul_v2r8(c6_00,sh_vdw_invrcut6))),one_sixth));
514 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
515 fvdw = _fjsp_mul_v2r8(_fjsp_add_v2r8(vvdw12,_fjsp_msub_v2r8(_fjsp_mul_v2r8(c6grid_00,one_sixth),_fjsp_mul_v2r8(exponent,ewclj6),vvdw6)),rinvsq00);
517 cutoff_mask = _fjsp_cmplt_v2r8(rsq00,rcutoff2);
519 /* Update potential sum for this i atom from the interaction with this j atom. */
520 velec = _fjsp_and_v2r8(velec,cutoff_mask);
521 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
522 velecsum = _fjsp_add_v2r8(velecsum,velec);
523 vvdw = _fjsp_and_v2r8(vvdw,cutoff_mask);
524 vvdw = _fjsp_unpacklo_v2r8(vvdw,_fjsp_setzero_v2r8());
525 vvdwsum = _fjsp_add_v2r8(vvdwsum,vvdw);
527 fscal = _fjsp_add_v2r8(felec,fvdw);
529 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
531 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
533 /* Update vectorial force */
534 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
535 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
536 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
538 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
539 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
540 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
544 /**************************
545 * CALCULATE INTERACTIONS *
546 **************************/
548 if (gmx_fjsp_any_lt_v2r8(rsq10,rcutoff2))
551 r10 = _fjsp_mul_v2r8(rsq10,rinv10);
553 /* Compute parameters for interactions between i and j atoms */
554 qq10 = _fjsp_mul_v2r8(iq1,jq0);
556 /* EWALD ELECTROSTATICS */
558 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
559 ewrt = _fjsp_mul_v2r8(r10,ewtabscale);
560 itab_tmp = _fjsp_dtox_v2r8(ewrt);
561 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
562 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
564 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
565 ewtabD = _fjsp_setzero_v2r8();
566 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
567 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
568 ewtabFn = _fjsp_setzero_v2r8();
569 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
570 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
571 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
572 velec = _fjsp_mul_v2r8(qq10,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv10,sh_ewald),velec));
573 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq10,rinv10),_fjsp_sub_v2r8(rinvsq10,felec));
575 cutoff_mask = _fjsp_cmplt_v2r8(rsq10,rcutoff2);
577 /* Update potential sum for this i atom from the interaction with this j atom. */
578 velec = _fjsp_and_v2r8(velec,cutoff_mask);
579 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
580 velecsum = _fjsp_add_v2r8(velecsum,velec);
584 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
586 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
588 /* Update vectorial force */
589 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
590 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
591 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
593 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
594 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
595 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
599 /**************************
600 * CALCULATE INTERACTIONS *
601 **************************/
603 if (gmx_fjsp_any_lt_v2r8(rsq20,rcutoff2))
606 r20 = _fjsp_mul_v2r8(rsq20,rinv20);
608 /* Compute parameters for interactions between i and j atoms */
609 qq20 = _fjsp_mul_v2r8(iq2,jq0);
611 /* EWALD ELECTROSTATICS */
613 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
614 ewrt = _fjsp_mul_v2r8(r20,ewtabscale);
615 itab_tmp = _fjsp_dtox_v2r8(ewrt);
616 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
617 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
619 ewtabF = _fjsp_load_v2r8( ewtab + 4*ewconv.i[0] );
620 ewtabD = _fjsp_setzero_v2r8();
621 GMX_FJSP_TRANSPOSE2_V2R8(ewtabF,ewtabD);
622 ewtabV = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(), ewtab + 4*ewconv.i[0] +2);
623 ewtabFn = _fjsp_setzero_v2r8();
624 GMX_FJSP_TRANSPOSE2_V2R8(ewtabV,ewtabFn);
625 felec = _fjsp_madd_v2r8(eweps,ewtabD,ewtabF);
626 velec = _fjsp_nmsub_v2r8(_fjsp_mul_v2r8(ewtabhalfspace,eweps) ,_fjsp_add_v2r8(ewtabF,felec), ewtabV);
627 velec = _fjsp_mul_v2r8(qq20,_fjsp_sub_v2r8(_fjsp_sub_v2r8(rinv20,sh_ewald),velec));
628 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq20,rinv20),_fjsp_sub_v2r8(rinvsq20,felec));
630 cutoff_mask = _fjsp_cmplt_v2r8(rsq20,rcutoff2);
632 /* Update potential sum for this i atom from the interaction with this j atom. */
633 velec = _fjsp_and_v2r8(velec,cutoff_mask);
634 velec = _fjsp_unpacklo_v2r8(velec,_fjsp_setzero_v2r8());
635 velecsum = _fjsp_add_v2r8(velecsum,velec);
639 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
641 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
643 /* Update vectorial force */
644 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
645 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
646 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
648 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
649 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
650 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
654 gmx_fjsp_decrement_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fjx0,fjy0,fjz0);
656 /* Inner loop uses 180 flops */
659 /* End of innermost loop */
661 gmx_fjsp_update_iforce_3atom_swizzle_v2r8(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
662 f+i_coord_offset,fshift+i_shift_offset);
665 /* Update potential energies */
666 gmx_fjsp_update_1pot_v2r8(velecsum,kernel_data->energygrp_elec+ggid);
667 gmx_fjsp_update_1pot_v2r8(vvdwsum,kernel_data->energygrp_vdw+ggid);
669 /* Increment number of inner iterations */
670 inneriter += j_index_end - j_index_start;
672 /* Outer loop uses 20 flops */
675 /* Increment number of outer iterations */
678 /* Update outer/inner flops */
680 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*180);
683 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_F_sparc64_hpc_ace_double
684 * Electrostatics interaction: Ewald
685 * VdW interaction: LJEwald
686 * Geometry: Water3-Particle
687 * Calculate force/pot: Force
690 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_F_sparc64_hpc_ace_double
691 (t_nblist * gmx_restrict nlist,
692 rvec * gmx_restrict xx,
693 rvec * gmx_restrict ff,
694 t_forcerec * gmx_restrict fr,
695 t_mdatoms * gmx_restrict mdatoms,
696 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
697 t_nrnb * gmx_restrict nrnb)
699 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
700 * just 0 for non-waters.
701 * Suffixes A,B refer to j loop unrolling done with double precision SIMD, e.g. for the two different
702 * jnr indices corresponding to data put in the four positions in the SIMD register.
704 int i_shift_offset,i_coord_offset,outeriter,inneriter;
705 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
707 int j_coord_offsetA,j_coord_offsetB;
708 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
710 real *shiftvec,*fshift,*x,*f;
711 _fjsp_v2r8 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
713 _fjsp_v2r8 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
715 _fjsp_v2r8 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
717 _fjsp_v2r8 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
718 int vdwjidx0A,vdwjidx0B;
719 _fjsp_v2r8 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
720 _fjsp_v2r8 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
721 _fjsp_v2r8 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
722 _fjsp_v2r8 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
723 _fjsp_v2r8 velec,felec,velecsum,facel,crf,krf,krf2;
726 _fjsp_v2r8 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
729 _fjsp_v2r8 one_sixth = gmx_fjsp_set1_v2r8(1.0/6.0);
730 _fjsp_v2r8 one_twelfth = gmx_fjsp_set1_v2r8(1.0/12.0);
731 _fjsp_v2r8 c6grid_00;
732 _fjsp_v2r8 c6grid_10;
733 _fjsp_v2r8 c6grid_20;
735 _fjsp_v2r8 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
736 _fjsp_v2r8 one_half = gmx_fjsp_set1_v2r8(0.5);
737 _fjsp_v2r8 minus_one = gmx_fjsp_set1_v2r8(-1.0);
738 _fjsp_v2r8 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
741 _fjsp_v2r8 dummy_mask,cutoff_mask;
742 _fjsp_v2r8 one = gmx_fjsp_set1_v2r8(1.0);
743 _fjsp_v2r8 two = gmx_fjsp_set1_v2r8(2.0);
744 union { _fjsp_v2r8 simd; long long int i[2]; } vfconv,gbconv,ewconv;
751 jindex = nlist->jindex;
753 shiftidx = nlist->shift;
755 shiftvec = fr->shift_vec[0];
756 fshift = fr->fshift[0];
757 facel = gmx_fjsp_set1_v2r8(fr->epsfac);
758 charge = mdatoms->chargeA;
759 nvdwtype = fr->ntype;
761 vdwtype = mdatoms->typeA;
762 vdwgridparam = fr->ljpme_c6grid;
763 sh_lj_ewald = gmx_fjsp_set1_v2r8(fr->ic->sh_lj_ewald);
764 ewclj = gmx_fjsp_set1_v2r8(fr->ewaldcoeff_lj);
765 ewclj2 = _fjsp_mul_v2r8(minus_one,_fjsp_mul_v2r8(ewclj,ewclj));
767 sh_ewald = gmx_fjsp_set1_v2r8(fr->ic->sh_ewald);
768 ewtab = fr->ic->tabq_coul_F;
769 ewtabscale = gmx_fjsp_set1_v2r8(fr->ic->tabq_scale);
770 ewtabhalfspace = gmx_fjsp_set1_v2r8(0.5/fr->ic->tabq_scale);
772 /* Setup water-specific parameters */
773 inr = nlist->iinr[0];
774 iq0 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+0]));
775 iq1 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+1]));
776 iq2 = _fjsp_mul_v2r8(facel,gmx_fjsp_set1_v2r8(charge[inr+2]));
777 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
779 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
780 rcutoff_scalar = fr->rcoulomb;
781 rcutoff = gmx_fjsp_set1_v2r8(rcutoff_scalar);
782 rcutoff2 = _fjsp_mul_v2r8(rcutoff,rcutoff);
784 sh_vdw_invrcut6 = gmx_fjsp_set1_v2r8(fr->ic->sh_invrc6);
785 rvdw = gmx_fjsp_set1_v2r8(fr->rvdw);
787 /* Avoid stupid compiler warnings */
795 /* Start outer loop over neighborlists */
796 for(iidx=0; iidx<nri; iidx++)
798 /* Load shift vector for this list */
799 i_shift_offset = DIM*shiftidx[iidx];
801 /* Load limits for loop over neighbors */
802 j_index_start = jindex[iidx];
803 j_index_end = jindex[iidx+1];
805 /* Get outer coordinate index */
807 i_coord_offset = DIM*inr;
809 /* Load i particle coords and add shift vector */
810 gmx_fjsp_load_shift_and_3rvec_broadcast_v2r8(shiftvec+i_shift_offset,x+i_coord_offset,
811 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
813 fix0 = _fjsp_setzero_v2r8();
814 fiy0 = _fjsp_setzero_v2r8();
815 fiz0 = _fjsp_setzero_v2r8();
816 fix1 = _fjsp_setzero_v2r8();
817 fiy1 = _fjsp_setzero_v2r8();
818 fiz1 = _fjsp_setzero_v2r8();
819 fix2 = _fjsp_setzero_v2r8();
820 fiy2 = _fjsp_setzero_v2r8();
821 fiz2 = _fjsp_setzero_v2r8();
823 /* Start inner kernel loop */
824 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
827 /* Get j neighbor index, and coordinate index */
830 j_coord_offsetA = DIM*jnrA;
831 j_coord_offsetB = DIM*jnrB;
833 /* load j atom coordinates */
834 gmx_fjsp_load_1rvec_2ptr_swizzle_v2r8(x+j_coord_offsetA,x+j_coord_offsetB,
837 /* Calculate displacement vector */
838 dx00 = _fjsp_sub_v2r8(ix0,jx0);
839 dy00 = _fjsp_sub_v2r8(iy0,jy0);
840 dz00 = _fjsp_sub_v2r8(iz0,jz0);
841 dx10 = _fjsp_sub_v2r8(ix1,jx0);
842 dy10 = _fjsp_sub_v2r8(iy1,jy0);
843 dz10 = _fjsp_sub_v2r8(iz1,jz0);
844 dx20 = _fjsp_sub_v2r8(ix2,jx0);
845 dy20 = _fjsp_sub_v2r8(iy2,jy0);
846 dz20 = _fjsp_sub_v2r8(iz2,jz0);
848 /* Calculate squared distance and things based on it */
849 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
850 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
851 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
853 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
854 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
855 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
857 rinvsq00 = _fjsp_mul_v2r8(rinv00,rinv00);
858 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
859 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
861 /* Load parameters for j particles */
862 jq0 = gmx_fjsp_load_2real_swizzle_v2r8(charge+jnrA+0,charge+jnrB+0);
863 vdwjidx0A = 2*vdwtype[jnrA+0];
864 vdwjidx0B = 2*vdwtype[jnrB+0];
866 fjx0 = _fjsp_setzero_v2r8();
867 fjy0 = _fjsp_setzero_v2r8();
868 fjz0 = _fjsp_setzero_v2r8();
870 /**************************
871 * CALCULATE INTERACTIONS *
872 **************************/
874 if (gmx_fjsp_any_lt_v2r8(rsq00,rcutoff2))
877 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
879 /* Compute parameters for interactions between i and j atoms */
880 qq00 = _fjsp_mul_v2r8(iq0,jq0);
881 gmx_fjsp_load_2pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,
882 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
884 c6grid_00 = gmx_fjsp_load_2real_swizzle_v2r8(vdwgridparam+vdwioffset0+vdwjidx0A,
885 vdwgridparam+vdwioffset0+vdwjidx0B);
887 /* EWALD ELECTROSTATICS */
889 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
890 ewrt = _fjsp_mul_v2r8(r00,ewtabscale);
891 itab_tmp = _fjsp_dtox_v2r8(ewrt);
892 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
893 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
895 gmx_fjsp_load_2pair_swizzle_v2r8(ewtab+ewconv.i[0],ewtab+ewconv.i[1],
897 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
898 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq00,rinv00),_fjsp_sub_v2r8(rinvsq00,felec));
900 /* Analytical LJ-PME */
901 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
902 ewcljrsq = _fjsp_mul_v2r8(ewclj2,rsq00);
903 ewclj6 = _fjsp_mul_v2r8(ewclj2,_fjsp_mul_v2r8(ewclj2,ewclj2));
904 exponent = gmx_simd_exp_d(-ewcljrsq);
905 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
906 poly = _fjsp_mul_v2r8(exponent,_fjsp_madd_v2r8(_fjsp_mul_v2r8(ewcljrsq,ewcljrsq),one_half,_fjsp_sub_v2r8(one,ewcljrsq)));
907 /* f6A = 6 * C6grid * (1 - poly) */
908 f6A = _fjsp_mul_v2r8(c6grid_00,_fjsp_msub_v2r8(one,poly));
909 /* f6B = C6grid * exponent * beta^6 */
910 f6B = _fjsp_mul_v2r8(_fjsp_mul_v2r8(c6grid_00,one_sixth),_fjsp_mul_v2r8(exponent,ewclj6));
911 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
912 fvdw = _fjsp_mul_v2r8(_fjsp_madd_v2r8(_fjsp_msub_v2r8(c12_00,rinvsix,_fjsp_sub_v2r8(c6_00,f6A)),rinvsix,f6B),rinvsq00);
914 cutoff_mask = _fjsp_cmplt_v2r8(rsq00,rcutoff2);
916 fscal = _fjsp_add_v2r8(felec,fvdw);
918 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
920 /* Update vectorial force */
921 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
922 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
923 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
925 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
926 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
927 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
931 /**************************
932 * CALCULATE INTERACTIONS *
933 **************************/
935 if (gmx_fjsp_any_lt_v2r8(rsq10,rcutoff2))
938 r10 = _fjsp_mul_v2r8(rsq10,rinv10);
940 /* Compute parameters for interactions between i and j atoms */
941 qq10 = _fjsp_mul_v2r8(iq1,jq0);
943 /* EWALD ELECTROSTATICS */
945 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
946 ewrt = _fjsp_mul_v2r8(r10,ewtabscale);
947 itab_tmp = _fjsp_dtox_v2r8(ewrt);
948 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
949 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
951 gmx_fjsp_load_2pair_swizzle_v2r8(ewtab+ewconv.i[0],ewtab+ewconv.i[1],
953 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
954 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq10,rinv10),_fjsp_sub_v2r8(rinvsq10,felec));
956 cutoff_mask = _fjsp_cmplt_v2r8(rsq10,rcutoff2);
960 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
962 /* Update vectorial force */
963 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
964 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
965 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
967 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
968 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
969 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
973 /**************************
974 * CALCULATE INTERACTIONS *
975 **************************/
977 if (gmx_fjsp_any_lt_v2r8(rsq20,rcutoff2))
980 r20 = _fjsp_mul_v2r8(rsq20,rinv20);
982 /* Compute parameters for interactions between i and j atoms */
983 qq20 = _fjsp_mul_v2r8(iq2,jq0);
985 /* EWALD ELECTROSTATICS */
987 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
988 ewrt = _fjsp_mul_v2r8(r20,ewtabscale);
989 itab_tmp = _fjsp_dtox_v2r8(ewrt);
990 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
991 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
993 gmx_fjsp_load_2pair_swizzle_v2r8(ewtab+ewconv.i[0],ewtab+ewconv.i[1],
995 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
996 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq20,rinv20),_fjsp_sub_v2r8(rinvsq20,felec));
998 cutoff_mask = _fjsp_cmplt_v2r8(rsq20,rcutoff2);
1002 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
1004 /* Update vectorial force */
1005 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
1006 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
1007 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
1009 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
1010 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
1011 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
1015 gmx_fjsp_decrement_1rvec_2ptr_swizzle_v2r8(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
1017 /* Inner loop uses 151 flops */
1020 if(jidx<j_index_end)
1024 j_coord_offsetA = DIM*jnrA;
1026 /* load j atom coordinates */
1027 gmx_fjsp_load_1rvec_1ptr_swizzle_v2r8(x+j_coord_offsetA,
1030 /* Calculate displacement vector */
1031 dx00 = _fjsp_sub_v2r8(ix0,jx0);
1032 dy00 = _fjsp_sub_v2r8(iy0,jy0);
1033 dz00 = _fjsp_sub_v2r8(iz0,jz0);
1034 dx10 = _fjsp_sub_v2r8(ix1,jx0);
1035 dy10 = _fjsp_sub_v2r8(iy1,jy0);
1036 dz10 = _fjsp_sub_v2r8(iz1,jz0);
1037 dx20 = _fjsp_sub_v2r8(ix2,jx0);
1038 dy20 = _fjsp_sub_v2r8(iy2,jy0);
1039 dz20 = _fjsp_sub_v2r8(iz2,jz0);
1041 /* Calculate squared distance and things based on it */
1042 rsq00 = gmx_fjsp_calc_rsq_v2r8(dx00,dy00,dz00);
1043 rsq10 = gmx_fjsp_calc_rsq_v2r8(dx10,dy10,dz10);
1044 rsq20 = gmx_fjsp_calc_rsq_v2r8(dx20,dy20,dz20);
1046 rinv00 = gmx_fjsp_invsqrt_v2r8(rsq00);
1047 rinv10 = gmx_fjsp_invsqrt_v2r8(rsq10);
1048 rinv20 = gmx_fjsp_invsqrt_v2r8(rsq20);
1050 rinvsq00 = _fjsp_mul_v2r8(rinv00,rinv00);
1051 rinvsq10 = _fjsp_mul_v2r8(rinv10,rinv10);
1052 rinvsq20 = _fjsp_mul_v2r8(rinv20,rinv20);
1054 /* Load parameters for j particles */
1055 jq0 = _fjsp_loadl_v2r8(_fjsp_setzero_v2r8(),charge+jnrA+0);
1056 vdwjidx0A = 2*vdwtype[jnrA+0];
1058 fjx0 = _fjsp_setzero_v2r8();
1059 fjy0 = _fjsp_setzero_v2r8();
1060 fjz0 = _fjsp_setzero_v2r8();
1062 /**************************
1063 * CALCULATE INTERACTIONS *
1064 **************************/
1066 if (gmx_fjsp_any_lt_v2r8(rsq00,rcutoff2))
1069 r00 = _fjsp_mul_v2r8(rsq00,rinv00);
1071 /* Compute parameters for interactions between i and j atoms */
1072 qq00 = _fjsp_mul_v2r8(iq0,jq0);
1073 gmx_fjsp_load_1pair_swizzle_v2r8(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
1075 c6grid_00 = gmx_fjsp_load_1real_swizzle_v2r8(vdwgridparam+vdwioffset0+vdwjidx0A);
1077 /* EWALD ELECTROSTATICS */
1079 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1080 ewrt = _fjsp_mul_v2r8(r00,ewtabscale);
1081 itab_tmp = _fjsp_dtox_v2r8(ewrt);
1082 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
1083 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
1085 gmx_fjsp_load_1pair_swizzle_v2r8(ewtab+ewconv.i[0],&ewtabF,&ewtabFn);
1086 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
1087 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq00,rinv00),_fjsp_sub_v2r8(rinvsq00,felec));
1089 /* Analytical LJ-PME */
1090 rinvsix = _fjsp_mul_v2r8(_fjsp_mul_v2r8(rinvsq00,rinvsq00),rinvsq00);
1091 ewcljrsq = _fjsp_mul_v2r8(ewclj2,rsq00);
1092 ewclj6 = _fjsp_mul_v2r8(ewclj2,_fjsp_mul_v2r8(ewclj2,ewclj2));
1093 exponent = gmx_simd_exp_d(-ewcljrsq);
1094 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1095 poly = _fjsp_mul_v2r8(exponent,_fjsp_madd_v2r8(_fjsp_mul_v2r8(ewcljrsq,ewcljrsq),one_half,_fjsp_sub_v2r8(one,ewcljrsq)));
1096 /* f6A = 6 * C6grid * (1 - poly) */
1097 f6A = _fjsp_mul_v2r8(c6grid_00,_fjsp_msub_v2r8(one,poly));
1098 /* f6B = C6grid * exponent * beta^6 */
1099 f6B = _fjsp_mul_v2r8(_fjsp_mul_v2r8(c6grid_00,one_sixth),_fjsp_mul_v2r8(exponent,ewclj6));
1100 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1101 fvdw = _fjsp_mul_v2r8(_fjsp_madd_v2r8(_fjsp_msub_v2r8(c12_00,rinvsix,_fjsp_sub_v2r8(c6_00,f6A)),rinvsix,f6B),rinvsq00);
1103 cutoff_mask = _fjsp_cmplt_v2r8(rsq00,rcutoff2);
1105 fscal = _fjsp_add_v2r8(felec,fvdw);
1107 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
1109 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
1111 /* Update vectorial force */
1112 fix0 = _fjsp_madd_v2r8(dx00,fscal,fix0);
1113 fiy0 = _fjsp_madd_v2r8(dy00,fscal,fiy0);
1114 fiz0 = _fjsp_madd_v2r8(dz00,fscal,fiz0);
1116 fjx0 = _fjsp_madd_v2r8(dx00,fscal,fjx0);
1117 fjy0 = _fjsp_madd_v2r8(dy00,fscal,fjy0);
1118 fjz0 = _fjsp_madd_v2r8(dz00,fscal,fjz0);
1122 /**************************
1123 * CALCULATE INTERACTIONS *
1124 **************************/
1126 if (gmx_fjsp_any_lt_v2r8(rsq10,rcutoff2))
1129 r10 = _fjsp_mul_v2r8(rsq10,rinv10);
1131 /* Compute parameters for interactions between i and j atoms */
1132 qq10 = _fjsp_mul_v2r8(iq1,jq0);
1134 /* EWALD ELECTROSTATICS */
1136 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1137 ewrt = _fjsp_mul_v2r8(r10,ewtabscale);
1138 itab_tmp = _fjsp_dtox_v2r8(ewrt);
1139 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
1140 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
1142 gmx_fjsp_load_1pair_swizzle_v2r8(ewtab+ewconv.i[0],&ewtabF,&ewtabFn);
1143 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
1144 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq10,rinv10),_fjsp_sub_v2r8(rinvsq10,felec));
1146 cutoff_mask = _fjsp_cmplt_v2r8(rsq10,rcutoff2);
1150 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
1152 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
1154 /* Update vectorial force */
1155 fix1 = _fjsp_madd_v2r8(dx10,fscal,fix1);
1156 fiy1 = _fjsp_madd_v2r8(dy10,fscal,fiy1);
1157 fiz1 = _fjsp_madd_v2r8(dz10,fscal,fiz1);
1159 fjx0 = _fjsp_madd_v2r8(dx10,fscal,fjx0);
1160 fjy0 = _fjsp_madd_v2r8(dy10,fscal,fjy0);
1161 fjz0 = _fjsp_madd_v2r8(dz10,fscal,fjz0);
1165 /**************************
1166 * CALCULATE INTERACTIONS *
1167 **************************/
1169 if (gmx_fjsp_any_lt_v2r8(rsq20,rcutoff2))
1172 r20 = _fjsp_mul_v2r8(rsq20,rinv20);
1174 /* Compute parameters for interactions between i and j atoms */
1175 qq20 = _fjsp_mul_v2r8(iq2,jq0);
1177 /* EWALD ELECTROSTATICS */
1179 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1180 ewrt = _fjsp_mul_v2r8(r20,ewtabscale);
1181 itab_tmp = _fjsp_dtox_v2r8(ewrt);
1182 eweps = _fjsp_sub_v2r8(ewrt,_fjsp_xtod_v2r8(itab_tmp));
1183 _fjsp_store_v2r8(&ewconv.simd,itab_tmp);
1185 gmx_fjsp_load_1pair_swizzle_v2r8(ewtab+ewconv.i[0],&ewtabF,&ewtabFn);
1186 felec = _fjsp_madd_v2r8(eweps,ewtabFn,_fjsp_nmsub_v2r8(eweps,ewtabF,ewtabF));
1187 felec = _fjsp_mul_v2r8(_fjsp_mul_v2r8(qq20,rinv20),_fjsp_sub_v2r8(rinvsq20,felec));
1189 cutoff_mask = _fjsp_cmplt_v2r8(rsq20,rcutoff2);
1193 fscal = _fjsp_and_v2r8(fscal,cutoff_mask);
1195 fscal = _fjsp_unpacklo_v2r8(fscal,_fjsp_setzero_v2r8());
1197 /* Update vectorial force */
1198 fix2 = _fjsp_madd_v2r8(dx20,fscal,fix2);
1199 fiy2 = _fjsp_madd_v2r8(dy20,fscal,fiy2);
1200 fiz2 = _fjsp_madd_v2r8(dz20,fscal,fiz2);
1202 fjx0 = _fjsp_madd_v2r8(dx20,fscal,fjx0);
1203 fjy0 = _fjsp_madd_v2r8(dy20,fscal,fjy0);
1204 fjz0 = _fjsp_madd_v2r8(dz20,fscal,fjz0);
1208 gmx_fjsp_decrement_1rvec_1ptr_swizzle_v2r8(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1210 /* Inner loop uses 151 flops */
1213 /* End of innermost loop */
1215 gmx_fjsp_update_iforce_3atom_swizzle_v2r8(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1216 f+i_coord_offset,fshift+i_shift_offset);
1218 /* Increment number of inner iterations */
1219 inneriter += j_index_end - j_index_start;
1221 /* Outer loop uses 18 flops */
1224 /* Increment number of outer iterations */
1227 /* Update outer/inner flops */
1229 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*151);