Merge release-5-0 into master
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_c / nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c
1 /*
2  * This file is part of the GROMACS molecular simulation package.
3  *
4  * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6  * and including many others, as listed in the AUTHORS file in the
7  * top-level source directory and at http://www.gromacs.org.
8  *
9  * GROMACS is free software; you can redistribute it and/or
10  * modify it under the terms of the GNU Lesser General Public License
11  * as published by the Free Software Foundation; either version 2.1
12  * of the License, or (at your option) any later version.
13  *
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35 /*
36  * Note: this file was generated by the GROMACS c kernel generator.
37  */
38 #include "gmxpre.h"
39
40 #include "config.h"
41
42 #include <math.h>
43
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
48
49 /*
50  * Gromacs nonbonded kernel:   nb_kernel_ElecEw_VdwNone_GeomW4W4_VF_c
51  * Electrostatics interaction: Ewald
52  * VdW interaction:            None
53  * Geometry:                   Water4-Water4
54  * Calculate force/pot:        PotentialAndForce
55  */
56 void
57 nb_kernel_ElecEw_VdwNone_GeomW4W4_VF_c
58                     (t_nblist                    * gmx_restrict       nlist,
59                      rvec                        * gmx_restrict          xx,
60                      rvec                        * gmx_restrict          ff,
61                      t_forcerec                  * gmx_restrict          fr,
62                      t_mdatoms                   * gmx_restrict     mdatoms,
63                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64                      t_nrnb                      * gmx_restrict        nrnb)
65 {
66     int              i_shift_offset,i_coord_offset,j_coord_offset;
67     int              j_index_start,j_index_end;
68     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
69     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
70     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
71     real             *shiftvec,*fshift,*x,*f;
72     int              vdwioffset1;
73     real             ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74     int              vdwioffset2;
75     real             ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
76     int              vdwioffset3;
77     real             ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
78     int              vdwjidx1;
79     real             jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
80     int              vdwjidx2;
81     real             jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
82     int              vdwjidx3;
83     real             jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
84     real             dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11;
85     real             dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12;
86     real             dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13,cexp1_13,cexp2_13;
87     real             dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21;
88     real             dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22;
89     real             dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23,cexp1_23,cexp2_23;
90     real             dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31,cexp1_31,cexp2_31;
91     real             dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32,cexp1_32,cexp2_32;
92     real             dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33,cexp1_33,cexp2_33;
93     real             velec,felec,velecsum,facel,crf,krf,krf2;
94     real             *charge;
95     int              ewitab;
96     real             ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace;
97     real             *ewtab;
98
99     x                = xx[0];
100     f                = ff[0];
101
102     nri              = nlist->nri;
103     iinr             = nlist->iinr;
104     jindex           = nlist->jindex;
105     jjnr             = nlist->jjnr;
106     shiftidx         = nlist->shift;
107     gid              = nlist->gid;
108     shiftvec         = fr->shift_vec[0];
109     fshift           = fr->fshift[0];
110     facel            = fr->epsfac;
111     charge           = mdatoms->chargeA;
112
113     sh_ewald         = fr->ic->sh_ewald;
114     ewtab            = fr->ic->tabq_coul_FDV0;
115     ewtabscale       = fr->ic->tabq_scale;
116     ewtabhalfspace   = 0.5/ewtabscale;
117
118     /* Setup water-specific parameters */
119     inr              = nlist->iinr[0];
120     iq1              = facel*charge[inr+1];
121     iq2              = facel*charge[inr+2];
122     iq3              = facel*charge[inr+3];
123
124     jq1              = charge[inr+1];
125     jq2              = charge[inr+2];
126     jq3              = charge[inr+3];
127     qq11             = iq1*jq1;
128     qq12             = iq1*jq2;
129     qq13             = iq1*jq3;
130     qq21             = iq2*jq1;
131     qq22             = iq2*jq2;
132     qq23             = iq2*jq3;
133     qq31             = iq3*jq1;
134     qq32             = iq3*jq2;
135     qq33             = iq3*jq3;
136
137     outeriter        = 0;
138     inneriter        = 0;
139
140     /* Start outer loop over neighborlists */
141     for(iidx=0; iidx<nri; iidx++)
142     {
143         /* Load shift vector for this list */
144         i_shift_offset   = DIM*shiftidx[iidx];
145         shX              = shiftvec[i_shift_offset+XX];
146         shY              = shiftvec[i_shift_offset+YY];
147         shZ              = shiftvec[i_shift_offset+ZZ];
148
149         /* Load limits for loop over neighbors */
150         j_index_start    = jindex[iidx];
151         j_index_end      = jindex[iidx+1];
152
153         /* Get outer coordinate index */
154         inr              = iinr[iidx];
155         i_coord_offset   = DIM*inr;
156
157         /* Load i particle coords and add shift vector */
158         ix1              = shX + x[i_coord_offset+DIM*1+XX];
159         iy1              = shY + x[i_coord_offset+DIM*1+YY];
160         iz1              = shZ + x[i_coord_offset+DIM*1+ZZ];
161         ix2              = shX + x[i_coord_offset+DIM*2+XX];
162         iy2              = shY + x[i_coord_offset+DIM*2+YY];
163         iz2              = shZ + x[i_coord_offset+DIM*2+ZZ];
164         ix3              = shX + x[i_coord_offset+DIM*3+XX];
165         iy3              = shY + x[i_coord_offset+DIM*3+YY];
166         iz3              = shZ + x[i_coord_offset+DIM*3+ZZ];
167
168         fix1             = 0.0;
169         fiy1             = 0.0;
170         fiz1             = 0.0;
171         fix2             = 0.0;
172         fiy2             = 0.0;
173         fiz2             = 0.0;
174         fix3             = 0.0;
175         fiy3             = 0.0;
176         fiz3             = 0.0;
177
178         /* Reset potential sums */
179         velecsum         = 0.0;
180
181         /* Start inner kernel loop */
182         for(jidx=j_index_start; jidx<j_index_end; jidx++)
183         {
184             /* Get j neighbor index, and coordinate index */
185             jnr              = jjnr[jidx];
186             j_coord_offset   = DIM*jnr;
187
188             /* load j atom coordinates */
189             jx1              = x[j_coord_offset+DIM*1+XX];
190             jy1              = x[j_coord_offset+DIM*1+YY];
191             jz1              = x[j_coord_offset+DIM*1+ZZ];
192             jx2              = x[j_coord_offset+DIM*2+XX];
193             jy2              = x[j_coord_offset+DIM*2+YY];
194             jz2              = x[j_coord_offset+DIM*2+ZZ];
195             jx3              = x[j_coord_offset+DIM*3+XX];
196             jy3              = x[j_coord_offset+DIM*3+YY];
197             jz3              = x[j_coord_offset+DIM*3+ZZ];
198
199             /* Calculate displacement vector */
200             dx11             = ix1 - jx1;
201             dy11             = iy1 - jy1;
202             dz11             = iz1 - jz1;
203             dx12             = ix1 - jx2;
204             dy12             = iy1 - jy2;
205             dz12             = iz1 - jz2;
206             dx13             = ix1 - jx3;
207             dy13             = iy1 - jy3;
208             dz13             = iz1 - jz3;
209             dx21             = ix2 - jx1;
210             dy21             = iy2 - jy1;
211             dz21             = iz2 - jz1;
212             dx22             = ix2 - jx2;
213             dy22             = iy2 - jy2;
214             dz22             = iz2 - jz2;
215             dx23             = ix2 - jx3;
216             dy23             = iy2 - jy3;
217             dz23             = iz2 - jz3;
218             dx31             = ix3 - jx1;
219             dy31             = iy3 - jy1;
220             dz31             = iz3 - jz1;
221             dx32             = ix3 - jx2;
222             dy32             = iy3 - jy2;
223             dz32             = iz3 - jz2;
224             dx33             = ix3 - jx3;
225             dy33             = iy3 - jy3;
226             dz33             = iz3 - jz3;
227
228             /* Calculate squared distance and things based on it */
229             rsq11            = dx11*dx11+dy11*dy11+dz11*dz11;
230             rsq12            = dx12*dx12+dy12*dy12+dz12*dz12;
231             rsq13            = dx13*dx13+dy13*dy13+dz13*dz13;
232             rsq21            = dx21*dx21+dy21*dy21+dz21*dz21;
233             rsq22            = dx22*dx22+dy22*dy22+dz22*dz22;
234             rsq23            = dx23*dx23+dy23*dy23+dz23*dz23;
235             rsq31            = dx31*dx31+dy31*dy31+dz31*dz31;
236             rsq32            = dx32*dx32+dy32*dy32+dz32*dz32;
237             rsq33            = dx33*dx33+dy33*dy33+dz33*dz33;
238
239             rinv11           = gmx_invsqrt(rsq11);
240             rinv12           = gmx_invsqrt(rsq12);
241             rinv13           = gmx_invsqrt(rsq13);
242             rinv21           = gmx_invsqrt(rsq21);
243             rinv22           = gmx_invsqrt(rsq22);
244             rinv23           = gmx_invsqrt(rsq23);
245             rinv31           = gmx_invsqrt(rsq31);
246             rinv32           = gmx_invsqrt(rsq32);
247             rinv33           = gmx_invsqrt(rsq33);
248
249             rinvsq11         = rinv11*rinv11;
250             rinvsq12         = rinv12*rinv12;
251             rinvsq13         = rinv13*rinv13;
252             rinvsq21         = rinv21*rinv21;
253             rinvsq22         = rinv22*rinv22;
254             rinvsq23         = rinv23*rinv23;
255             rinvsq31         = rinv31*rinv31;
256             rinvsq32         = rinv32*rinv32;
257             rinvsq33         = rinv33*rinv33;
258
259             /**************************
260              * CALCULATE INTERACTIONS *
261              **************************/
262
263             r11              = rsq11*rinv11;
264
265             /* EWALD ELECTROSTATICS */
266
267             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
268             ewrt             = r11*ewtabscale;
269             ewitab           = ewrt;
270             eweps            = ewrt-ewitab;
271             ewitab           = 4*ewitab;
272             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
273             velec            = qq11*(rinv11-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
274             felec            = qq11*rinv11*(rinvsq11-felec);
275
276             /* Update potential sums from outer loop */
277             velecsum        += velec;
278
279             fscal            = felec;
280
281             /* Calculate temporary vectorial force */
282             tx               = fscal*dx11;
283             ty               = fscal*dy11;
284             tz               = fscal*dz11;
285
286             /* Update vectorial force */
287             fix1            += tx;
288             fiy1            += ty;
289             fiz1            += tz;
290             f[j_coord_offset+DIM*1+XX] -= tx;
291             f[j_coord_offset+DIM*1+YY] -= ty;
292             f[j_coord_offset+DIM*1+ZZ] -= tz;
293
294             /**************************
295              * CALCULATE INTERACTIONS *
296              **************************/
297
298             r12              = rsq12*rinv12;
299
300             /* EWALD ELECTROSTATICS */
301
302             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
303             ewrt             = r12*ewtabscale;
304             ewitab           = ewrt;
305             eweps            = ewrt-ewitab;
306             ewitab           = 4*ewitab;
307             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
308             velec            = qq12*(rinv12-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
309             felec            = qq12*rinv12*(rinvsq12-felec);
310
311             /* Update potential sums from outer loop */
312             velecsum        += velec;
313
314             fscal            = felec;
315
316             /* Calculate temporary vectorial force */
317             tx               = fscal*dx12;
318             ty               = fscal*dy12;
319             tz               = fscal*dz12;
320
321             /* Update vectorial force */
322             fix1            += tx;
323             fiy1            += ty;
324             fiz1            += tz;
325             f[j_coord_offset+DIM*2+XX] -= tx;
326             f[j_coord_offset+DIM*2+YY] -= ty;
327             f[j_coord_offset+DIM*2+ZZ] -= tz;
328
329             /**************************
330              * CALCULATE INTERACTIONS *
331              **************************/
332
333             r13              = rsq13*rinv13;
334
335             /* EWALD ELECTROSTATICS */
336
337             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
338             ewrt             = r13*ewtabscale;
339             ewitab           = ewrt;
340             eweps            = ewrt-ewitab;
341             ewitab           = 4*ewitab;
342             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
343             velec            = qq13*(rinv13-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
344             felec            = qq13*rinv13*(rinvsq13-felec);
345
346             /* Update potential sums from outer loop */
347             velecsum        += velec;
348
349             fscal            = felec;
350
351             /* Calculate temporary vectorial force */
352             tx               = fscal*dx13;
353             ty               = fscal*dy13;
354             tz               = fscal*dz13;
355
356             /* Update vectorial force */
357             fix1            += tx;
358             fiy1            += ty;
359             fiz1            += tz;
360             f[j_coord_offset+DIM*3+XX] -= tx;
361             f[j_coord_offset+DIM*3+YY] -= ty;
362             f[j_coord_offset+DIM*3+ZZ] -= tz;
363
364             /**************************
365              * CALCULATE INTERACTIONS *
366              **************************/
367
368             r21              = rsq21*rinv21;
369
370             /* EWALD ELECTROSTATICS */
371
372             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
373             ewrt             = r21*ewtabscale;
374             ewitab           = ewrt;
375             eweps            = ewrt-ewitab;
376             ewitab           = 4*ewitab;
377             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
378             velec            = qq21*(rinv21-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
379             felec            = qq21*rinv21*(rinvsq21-felec);
380
381             /* Update potential sums from outer loop */
382             velecsum        += velec;
383
384             fscal            = felec;
385
386             /* Calculate temporary vectorial force */
387             tx               = fscal*dx21;
388             ty               = fscal*dy21;
389             tz               = fscal*dz21;
390
391             /* Update vectorial force */
392             fix2            += tx;
393             fiy2            += ty;
394             fiz2            += tz;
395             f[j_coord_offset+DIM*1+XX] -= tx;
396             f[j_coord_offset+DIM*1+YY] -= ty;
397             f[j_coord_offset+DIM*1+ZZ] -= tz;
398
399             /**************************
400              * CALCULATE INTERACTIONS *
401              **************************/
402
403             r22              = rsq22*rinv22;
404
405             /* EWALD ELECTROSTATICS */
406
407             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
408             ewrt             = r22*ewtabscale;
409             ewitab           = ewrt;
410             eweps            = ewrt-ewitab;
411             ewitab           = 4*ewitab;
412             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
413             velec            = qq22*(rinv22-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
414             felec            = qq22*rinv22*(rinvsq22-felec);
415
416             /* Update potential sums from outer loop */
417             velecsum        += velec;
418
419             fscal            = felec;
420
421             /* Calculate temporary vectorial force */
422             tx               = fscal*dx22;
423             ty               = fscal*dy22;
424             tz               = fscal*dz22;
425
426             /* Update vectorial force */
427             fix2            += tx;
428             fiy2            += ty;
429             fiz2            += tz;
430             f[j_coord_offset+DIM*2+XX] -= tx;
431             f[j_coord_offset+DIM*2+YY] -= ty;
432             f[j_coord_offset+DIM*2+ZZ] -= tz;
433
434             /**************************
435              * CALCULATE INTERACTIONS *
436              **************************/
437
438             r23              = rsq23*rinv23;
439
440             /* EWALD ELECTROSTATICS */
441
442             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
443             ewrt             = r23*ewtabscale;
444             ewitab           = ewrt;
445             eweps            = ewrt-ewitab;
446             ewitab           = 4*ewitab;
447             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
448             velec            = qq23*(rinv23-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
449             felec            = qq23*rinv23*(rinvsq23-felec);
450
451             /* Update potential sums from outer loop */
452             velecsum        += velec;
453
454             fscal            = felec;
455
456             /* Calculate temporary vectorial force */
457             tx               = fscal*dx23;
458             ty               = fscal*dy23;
459             tz               = fscal*dz23;
460
461             /* Update vectorial force */
462             fix2            += tx;
463             fiy2            += ty;
464             fiz2            += tz;
465             f[j_coord_offset+DIM*3+XX] -= tx;
466             f[j_coord_offset+DIM*3+YY] -= ty;
467             f[j_coord_offset+DIM*3+ZZ] -= tz;
468
469             /**************************
470              * CALCULATE INTERACTIONS *
471              **************************/
472
473             r31              = rsq31*rinv31;
474
475             /* EWALD ELECTROSTATICS */
476
477             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
478             ewrt             = r31*ewtabscale;
479             ewitab           = ewrt;
480             eweps            = ewrt-ewitab;
481             ewitab           = 4*ewitab;
482             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
483             velec            = qq31*(rinv31-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
484             felec            = qq31*rinv31*(rinvsq31-felec);
485
486             /* Update potential sums from outer loop */
487             velecsum        += velec;
488
489             fscal            = felec;
490
491             /* Calculate temporary vectorial force */
492             tx               = fscal*dx31;
493             ty               = fscal*dy31;
494             tz               = fscal*dz31;
495
496             /* Update vectorial force */
497             fix3            += tx;
498             fiy3            += ty;
499             fiz3            += tz;
500             f[j_coord_offset+DIM*1+XX] -= tx;
501             f[j_coord_offset+DIM*1+YY] -= ty;
502             f[j_coord_offset+DIM*1+ZZ] -= tz;
503
504             /**************************
505              * CALCULATE INTERACTIONS *
506              **************************/
507
508             r32              = rsq32*rinv32;
509
510             /* EWALD ELECTROSTATICS */
511
512             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
513             ewrt             = r32*ewtabscale;
514             ewitab           = ewrt;
515             eweps            = ewrt-ewitab;
516             ewitab           = 4*ewitab;
517             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
518             velec            = qq32*(rinv32-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
519             felec            = qq32*rinv32*(rinvsq32-felec);
520
521             /* Update potential sums from outer loop */
522             velecsum        += velec;
523
524             fscal            = felec;
525
526             /* Calculate temporary vectorial force */
527             tx               = fscal*dx32;
528             ty               = fscal*dy32;
529             tz               = fscal*dz32;
530
531             /* Update vectorial force */
532             fix3            += tx;
533             fiy3            += ty;
534             fiz3            += tz;
535             f[j_coord_offset+DIM*2+XX] -= tx;
536             f[j_coord_offset+DIM*2+YY] -= ty;
537             f[j_coord_offset+DIM*2+ZZ] -= tz;
538
539             /**************************
540              * CALCULATE INTERACTIONS *
541              **************************/
542
543             r33              = rsq33*rinv33;
544
545             /* EWALD ELECTROSTATICS */
546
547             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
548             ewrt             = r33*ewtabscale;
549             ewitab           = ewrt;
550             eweps            = ewrt-ewitab;
551             ewitab           = 4*ewitab;
552             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
553             velec            = qq33*(rinv33-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
554             felec            = qq33*rinv33*(rinvsq33-felec);
555
556             /* Update potential sums from outer loop */
557             velecsum        += velec;
558
559             fscal            = felec;
560
561             /* Calculate temporary vectorial force */
562             tx               = fscal*dx33;
563             ty               = fscal*dy33;
564             tz               = fscal*dz33;
565
566             /* Update vectorial force */
567             fix3            += tx;
568             fiy3            += ty;
569             fiz3            += tz;
570             f[j_coord_offset+DIM*3+XX] -= tx;
571             f[j_coord_offset+DIM*3+YY] -= ty;
572             f[j_coord_offset+DIM*3+ZZ] -= tz;
573
574             /* Inner loop uses 360 flops */
575         }
576         /* End of innermost loop */
577
578         tx = ty = tz = 0;
579         f[i_coord_offset+DIM*1+XX] += fix1;
580         f[i_coord_offset+DIM*1+YY] += fiy1;
581         f[i_coord_offset+DIM*1+ZZ] += fiz1;
582         tx                         += fix1;
583         ty                         += fiy1;
584         tz                         += fiz1;
585         f[i_coord_offset+DIM*2+XX] += fix2;
586         f[i_coord_offset+DIM*2+YY] += fiy2;
587         f[i_coord_offset+DIM*2+ZZ] += fiz2;
588         tx                         += fix2;
589         ty                         += fiy2;
590         tz                         += fiz2;
591         f[i_coord_offset+DIM*3+XX] += fix3;
592         f[i_coord_offset+DIM*3+YY] += fiy3;
593         f[i_coord_offset+DIM*3+ZZ] += fiz3;
594         tx                         += fix3;
595         ty                         += fiy3;
596         tz                         += fiz3;
597         fshift[i_shift_offset+XX]  += tx;
598         fshift[i_shift_offset+YY]  += ty;
599         fshift[i_shift_offset+ZZ]  += tz;
600
601         ggid                        = gid[iidx];
602         /* Update potential energies */
603         kernel_data->energygrp_elec[ggid] += velecsum;
604
605         /* Increment number of inner iterations */
606         inneriter                  += j_index_end - j_index_start;
607
608         /* Outer loop uses 31 flops */
609     }
610
611     /* Increment number of outer iterations */
612     outeriter        += nri;
613
614     /* Update outer/inner flops */
615
616     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W4W4_VF,outeriter*31 + inneriter*360);
617 }
618 /*
619  * Gromacs nonbonded kernel:   nb_kernel_ElecEw_VdwNone_GeomW4W4_F_c
620  * Electrostatics interaction: Ewald
621  * VdW interaction:            None
622  * Geometry:                   Water4-Water4
623  * Calculate force/pot:        Force
624  */
625 void
626 nb_kernel_ElecEw_VdwNone_GeomW4W4_F_c
627                     (t_nblist                    * gmx_restrict       nlist,
628                      rvec                        * gmx_restrict          xx,
629                      rvec                        * gmx_restrict          ff,
630                      t_forcerec                  * gmx_restrict          fr,
631                      t_mdatoms                   * gmx_restrict     mdatoms,
632                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
633                      t_nrnb                      * gmx_restrict        nrnb)
634 {
635     int              i_shift_offset,i_coord_offset,j_coord_offset;
636     int              j_index_start,j_index_end;
637     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
638     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
639     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
640     real             *shiftvec,*fshift,*x,*f;
641     int              vdwioffset1;
642     real             ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
643     int              vdwioffset2;
644     real             ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
645     int              vdwioffset3;
646     real             ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
647     int              vdwjidx1;
648     real             jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
649     int              vdwjidx2;
650     real             jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
651     int              vdwjidx3;
652     real             jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
653     real             dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11,cexp1_11,cexp2_11;
654     real             dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12,cexp1_12,cexp2_12;
655     real             dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13,cexp1_13,cexp2_13;
656     real             dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21,cexp1_21,cexp2_21;
657     real             dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22,cexp1_22,cexp2_22;
658     real             dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23,cexp1_23,cexp2_23;
659     real             dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31,cexp1_31,cexp2_31;
660     real             dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32,cexp1_32,cexp2_32;
661     real             dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33,cexp1_33,cexp2_33;
662     real             velec,felec,velecsum,facel,crf,krf,krf2;
663     real             *charge;
664     int              ewitab;
665     real             ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace;
666     real             *ewtab;
667
668     x                = xx[0];
669     f                = ff[0];
670
671     nri              = nlist->nri;
672     iinr             = nlist->iinr;
673     jindex           = nlist->jindex;
674     jjnr             = nlist->jjnr;
675     shiftidx         = nlist->shift;
676     gid              = nlist->gid;
677     shiftvec         = fr->shift_vec[0];
678     fshift           = fr->fshift[0];
679     facel            = fr->epsfac;
680     charge           = mdatoms->chargeA;
681
682     sh_ewald         = fr->ic->sh_ewald;
683     ewtab            = fr->ic->tabq_coul_F;
684     ewtabscale       = fr->ic->tabq_scale;
685     ewtabhalfspace   = 0.5/ewtabscale;
686
687     /* Setup water-specific parameters */
688     inr              = nlist->iinr[0];
689     iq1              = facel*charge[inr+1];
690     iq2              = facel*charge[inr+2];
691     iq3              = facel*charge[inr+3];
692
693     jq1              = charge[inr+1];
694     jq2              = charge[inr+2];
695     jq3              = charge[inr+3];
696     qq11             = iq1*jq1;
697     qq12             = iq1*jq2;
698     qq13             = iq1*jq3;
699     qq21             = iq2*jq1;
700     qq22             = iq2*jq2;
701     qq23             = iq2*jq3;
702     qq31             = iq3*jq1;
703     qq32             = iq3*jq2;
704     qq33             = iq3*jq3;
705
706     outeriter        = 0;
707     inneriter        = 0;
708
709     /* Start outer loop over neighborlists */
710     for(iidx=0; iidx<nri; iidx++)
711     {
712         /* Load shift vector for this list */
713         i_shift_offset   = DIM*shiftidx[iidx];
714         shX              = shiftvec[i_shift_offset+XX];
715         shY              = shiftvec[i_shift_offset+YY];
716         shZ              = shiftvec[i_shift_offset+ZZ];
717
718         /* Load limits for loop over neighbors */
719         j_index_start    = jindex[iidx];
720         j_index_end      = jindex[iidx+1];
721
722         /* Get outer coordinate index */
723         inr              = iinr[iidx];
724         i_coord_offset   = DIM*inr;
725
726         /* Load i particle coords and add shift vector */
727         ix1              = shX + x[i_coord_offset+DIM*1+XX];
728         iy1              = shY + x[i_coord_offset+DIM*1+YY];
729         iz1              = shZ + x[i_coord_offset+DIM*1+ZZ];
730         ix2              = shX + x[i_coord_offset+DIM*2+XX];
731         iy2              = shY + x[i_coord_offset+DIM*2+YY];
732         iz2              = shZ + x[i_coord_offset+DIM*2+ZZ];
733         ix3              = shX + x[i_coord_offset+DIM*3+XX];
734         iy3              = shY + x[i_coord_offset+DIM*3+YY];
735         iz3              = shZ + x[i_coord_offset+DIM*3+ZZ];
736
737         fix1             = 0.0;
738         fiy1             = 0.0;
739         fiz1             = 0.0;
740         fix2             = 0.0;
741         fiy2             = 0.0;
742         fiz2             = 0.0;
743         fix3             = 0.0;
744         fiy3             = 0.0;
745         fiz3             = 0.0;
746
747         /* Start inner kernel loop */
748         for(jidx=j_index_start; jidx<j_index_end; jidx++)
749         {
750             /* Get j neighbor index, and coordinate index */
751             jnr              = jjnr[jidx];
752             j_coord_offset   = DIM*jnr;
753
754             /* load j atom coordinates */
755             jx1              = x[j_coord_offset+DIM*1+XX];
756             jy1              = x[j_coord_offset+DIM*1+YY];
757             jz1              = x[j_coord_offset+DIM*1+ZZ];
758             jx2              = x[j_coord_offset+DIM*2+XX];
759             jy2              = x[j_coord_offset+DIM*2+YY];
760             jz2              = x[j_coord_offset+DIM*2+ZZ];
761             jx3              = x[j_coord_offset+DIM*3+XX];
762             jy3              = x[j_coord_offset+DIM*3+YY];
763             jz3              = x[j_coord_offset+DIM*3+ZZ];
764
765             /* Calculate displacement vector */
766             dx11             = ix1 - jx1;
767             dy11             = iy1 - jy1;
768             dz11             = iz1 - jz1;
769             dx12             = ix1 - jx2;
770             dy12             = iy1 - jy2;
771             dz12             = iz1 - jz2;
772             dx13             = ix1 - jx3;
773             dy13             = iy1 - jy3;
774             dz13             = iz1 - jz3;
775             dx21             = ix2 - jx1;
776             dy21             = iy2 - jy1;
777             dz21             = iz2 - jz1;
778             dx22             = ix2 - jx2;
779             dy22             = iy2 - jy2;
780             dz22             = iz2 - jz2;
781             dx23             = ix2 - jx3;
782             dy23             = iy2 - jy3;
783             dz23             = iz2 - jz3;
784             dx31             = ix3 - jx1;
785             dy31             = iy3 - jy1;
786             dz31             = iz3 - jz1;
787             dx32             = ix3 - jx2;
788             dy32             = iy3 - jy2;
789             dz32             = iz3 - jz2;
790             dx33             = ix3 - jx3;
791             dy33             = iy3 - jy3;
792             dz33             = iz3 - jz3;
793
794             /* Calculate squared distance and things based on it */
795             rsq11            = dx11*dx11+dy11*dy11+dz11*dz11;
796             rsq12            = dx12*dx12+dy12*dy12+dz12*dz12;
797             rsq13            = dx13*dx13+dy13*dy13+dz13*dz13;
798             rsq21            = dx21*dx21+dy21*dy21+dz21*dz21;
799             rsq22            = dx22*dx22+dy22*dy22+dz22*dz22;
800             rsq23            = dx23*dx23+dy23*dy23+dz23*dz23;
801             rsq31            = dx31*dx31+dy31*dy31+dz31*dz31;
802             rsq32            = dx32*dx32+dy32*dy32+dz32*dz32;
803             rsq33            = dx33*dx33+dy33*dy33+dz33*dz33;
804
805             rinv11           = gmx_invsqrt(rsq11);
806             rinv12           = gmx_invsqrt(rsq12);
807             rinv13           = gmx_invsqrt(rsq13);
808             rinv21           = gmx_invsqrt(rsq21);
809             rinv22           = gmx_invsqrt(rsq22);
810             rinv23           = gmx_invsqrt(rsq23);
811             rinv31           = gmx_invsqrt(rsq31);
812             rinv32           = gmx_invsqrt(rsq32);
813             rinv33           = gmx_invsqrt(rsq33);
814
815             rinvsq11         = rinv11*rinv11;
816             rinvsq12         = rinv12*rinv12;
817             rinvsq13         = rinv13*rinv13;
818             rinvsq21         = rinv21*rinv21;
819             rinvsq22         = rinv22*rinv22;
820             rinvsq23         = rinv23*rinv23;
821             rinvsq31         = rinv31*rinv31;
822             rinvsq32         = rinv32*rinv32;
823             rinvsq33         = rinv33*rinv33;
824
825             /**************************
826              * CALCULATE INTERACTIONS *
827              **************************/
828
829             r11              = rsq11*rinv11;
830
831             /* EWALD ELECTROSTATICS */
832
833             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
834             ewrt             = r11*ewtabscale;
835             ewitab           = ewrt;
836             eweps            = ewrt-ewitab;
837             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
838             felec            = qq11*rinv11*(rinvsq11-felec);
839
840             fscal            = felec;
841
842             /* Calculate temporary vectorial force */
843             tx               = fscal*dx11;
844             ty               = fscal*dy11;
845             tz               = fscal*dz11;
846
847             /* Update vectorial force */
848             fix1            += tx;
849             fiy1            += ty;
850             fiz1            += tz;
851             f[j_coord_offset+DIM*1+XX] -= tx;
852             f[j_coord_offset+DIM*1+YY] -= ty;
853             f[j_coord_offset+DIM*1+ZZ] -= tz;
854
855             /**************************
856              * CALCULATE INTERACTIONS *
857              **************************/
858
859             r12              = rsq12*rinv12;
860
861             /* EWALD ELECTROSTATICS */
862
863             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
864             ewrt             = r12*ewtabscale;
865             ewitab           = ewrt;
866             eweps            = ewrt-ewitab;
867             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
868             felec            = qq12*rinv12*(rinvsq12-felec);
869
870             fscal            = felec;
871
872             /* Calculate temporary vectorial force */
873             tx               = fscal*dx12;
874             ty               = fscal*dy12;
875             tz               = fscal*dz12;
876
877             /* Update vectorial force */
878             fix1            += tx;
879             fiy1            += ty;
880             fiz1            += tz;
881             f[j_coord_offset+DIM*2+XX] -= tx;
882             f[j_coord_offset+DIM*2+YY] -= ty;
883             f[j_coord_offset+DIM*2+ZZ] -= tz;
884
885             /**************************
886              * CALCULATE INTERACTIONS *
887              **************************/
888
889             r13              = rsq13*rinv13;
890
891             /* EWALD ELECTROSTATICS */
892
893             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
894             ewrt             = r13*ewtabscale;
895             ewitab           = ewrt;
896             eweps            = ewrt-ewitab;
897             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
898             felec            = qq13*rinv13*(rinvsq13-felec);
899
900             fscal            = felec;
901
902             /* Calculate temporary vectorial force */
903             tx               = fscal*dx13;
904             ty               = fscal*dy13;
905             tz               = fscal*dz13;
906
907             /* Update vectorial force */
908             fix1            += tx;
909             fiy1            += ty;
910             fiz1            += tz;
911             f[j_coord_offset+DIM*3+XX] -= tx;
912             f[j_coord_offset+DIM*3+YY] -= ty;
913             f[j_coord_offset+DIM*3+ZZ] -= tz;
914
915             /**************************
916              * CALCULATE INTERACTIONS *
917              **************************/
918
919             r21              = rsq21*rinv21;
920
921             /* EWALD ELECTROSTATICS */
922
923             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
924             ewrt             = r21*ewtabscale;
925             ewitab           = ewrt;
926             eweps            = ewrt-ewitab;
927             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
928             felec            = qq21*rinv21*(rinvsq21-felec);
929
930             fscal            = felec;
931
932             /* Calculate temporary vectorial force */
933             tx               = fscal*dx21;
934             ty               = fscal*dy21;
935             tz               = fscal*dz21;
936
937             /* Update vectorial force */
938             fix2            += tx;
939             fiy2            += ty;
940             fiz2            += tz;
941             f[j_coord_offset+DIM*1+XX] -= tx;
942             f[j_coord_offset+DIM*1+YY] -= ty;
943             f[j_coord_offset+DIM*1+ZZ] -= tz;
944
945             /**************************
946              * CALCULATE INTERACTIONS *
947              **************************/
948
949             r22              = rsq22*rinv22;
950
951             /* EWALD ELECTROSTATICS */
952
953             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
954             ewrt             = r22*ewtabscale;
955             ewitab           = ewrt;
956             eweps            = ewrt-ewitab;
957             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
958             felec            = qq22*rinv22*(rinvsq22-felec);
959
960             fscal            = felec;
961
962             /* Calculate temporary vectorial force */
963             tx               = fscal*dx22;
964             ty               = fscal*dy22;
965             tz               = fscal*dz22;
966
967             /* Update vectorial force */
968             fix2            += tx;
969             fiy2            += ty;
970             fiz2            += tz;
971             f[j_coord_offset+DIM*2+XX] -= tx;
972             f[j_coord_offset+DIM*2+YY] -= ty;
973             f[j_coord_offset+DIM*2+ZZ] -= tz;
974
975             /**************************
976              * CALCULATE INTERACTIONS *
977              **************************/
978
979             r23              = rsq23*rinv23;
980
981             /* EWALD ELECTROSTATICS */
982
983             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
984             ewrt             = r23*ewtabscale;
985             ewitab           = ewrt;
986             eweps            = ewrt-ewitab;
987             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
988             felec            = qq23*rinv23*(rinvsq23-felec);
989
990             fscal            = felec;
991
992             /* Calculate temporary vectorial force */
993             tx               = fscal*dx23;
994             ty               = fscal*dy23;
995             tz               = fscal*dz23;
996
997             /* Update vectorial force */
998             fix2            += tx;
999             fiy2            += ty;
1000             fiz2            += tz;
1001             f[j_coord_offset+DIM*3+XX] -= tx;
1002             f[j_coord_offset+DIM*3+YY] -= ty;
1003             f[j_coord_offset+DIM*3+ZZ] -= tz;
1004
1005             /**************************
1006              * CALCULATE INTERACTIONS *
1007              **************************/
1008
1009             r31              = rsq31*rinv31;
1010
1011             /* EWALD ELECTROSTATICS */
1012
1013             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1014             ewrt             = r31*ewtabscale;
1015             ewitab           = ewrt;
1016             eweps            = ewrt-ewitab;
1017             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
1018             felec            = qq31*rinv31*(rinvsq31-felec);
1019
1020             fscal            = felec;
1021
1022             /* Calculate temporary vectorial force */
1023             tx               = fscal*dx31;
1024             ty               = fscal*dy31;
1025             tz               = fscal*dz31;
1026
1027             /* Update vectorial force */
1028             fix3            += tx;
1029             fiy3            += ty;
1030             fiz3            += tz;
1031             f[j_coord_offset+DIM*1+XX] -= tx;
1032             f[j_coord_offset+DIM*1+YY] -= ty;
1033             f[j_coord_offset+DIM*1+ZZ] -= tz;
1034
1035             /**************************
1036              * CALCULATE INTERACTIONS *
1037              **************************/
1038
1039             r32              = rsq32*rinv32;
1040
1041             /* EWALD ELECTROSTATICS */
1042
1043             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1044             ewrt             = r32*ewtabscale;
1045             ewitab           = ewrt;
1046             eweps            = ewrt-ewitab;
1047             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
1048             felec            = qq32*rinv32*(rinvsq32-felec);
1049
1050             fscal            = felec;
1051
1052             /* Calculate temporary vectorial force */
1053             tx               = fscal*dx32;
1054             ty               = fscal*dy32;
1055             tz               = fscal*dz32;
1056
1057             /* Update vectorial force */
1058             fix3            += tx;
1059             fiy3            += ty;
1060             fiz3            += tz;
1061             f[j_coord_offset+DIM*2+XX] -= tx;
1062             f[j_coord_offset+DIM*2+YY] -= ty;
1063             f[j_coord_offset+DIM*2+ZZ] -= tz;
1064
1065             /**************************
1066              * CALCULATE INTERACTIONS *
1067              **************************/
1068
1069             r33              = rsq33*rinv33;
1070
1071             /* EWALD ELECTROSTATICS */
1072
1073             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1074             ewrt             = r33*ewtabscale;
1075             ewitab           = ewrt;
1076             eweps            = ewrt-ewitab;
1077             felec            = (1.0-eweps)*ewtab[ewitab]+eweps*ewtab[ewitab+1];
1078             felec            = qq33*rinv33*(rinvsq33-felec);
1079
1080             fscal            = felec;
1081
1082             /* Calculate temporary vectorial force */
1083             tx               = fscal*dx33;
1084             ty               = fscal*dy33;
1085             tz               = fscal*dz33;
1086
1087             /* Update vectorial force */
1088             fix3            += tx;
1089             fiy3            += ty;
1090             fiz3            += tz;
1091             f[j_coord_offset+DIM*3+XX] -= tx;
1092             f[j_coord_offset+DIM*3+YY] -= ty;
1093             f[j_coord_offset+DIM*3+ZZ] -= tz;
1094
1095             /* Inner loop uses 297 flops */
1096         }
1097         /* End of innermost loop */
1098
1099         tx = ty = tz = 0;
1100         f[i_coord_offset+DIM*1+XX] += fix1;
1101         f[i_coord_offset+DIM*1+YY] += fiy1;
1102         f[i_coord_offset+DIM*1+ZZ] += fiz1;
1103         tx                         += fix1;
1104         ty                         += fiy1;
1105         tz                         += fiz1;
1106         f[i_coord_offset+DIM*2+XX] += fix2;
1107         f[i_coord_offset+DIM*2+YY] += fiy2;
1108         f[i_coord_offset+DIM*2+ZZ] += fiz2;
1109         tx                         += fix2;
1110         ty                         += fiy2;
1111         tz                         += fiz2;
1112         f[i_coord_offset+DIM*3+XX] += fix3;
1113         f[i_coord_offset+DIM*3+YY] += fiy3;
1114         f[i_coord_offset+DIM*3+ZZ] += fiz3;
1115         tx                         += fix3;
1116         ty                         += fiy3;
1117         tz                         += fiz3;
1118         fshift[i_shift_offset+XX]  += tx;
1119         fshift[i_shift_offset+YY]  += ty;
1120         fshift[i_shift_offset+ZZ]  += tz;
1121
1122         /* Increment number of inner iterations */
1123         inneriter                  += j_index_end - j_index_start;
1124
1125         /* Outer loop uses 30 flops */
1126     }
1127
1128     /* Increment number of outer iterations */
1129     outeriter        += nri;
1130
1131     /* Update outer/inner flops */
1132
1133     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W4W4_F,outeriter*30 + inneriter*297);
1134 }