src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c

   1 /*
   2  * This file is part of the GROMACS molecular simulation package.
   3  *
   4  * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
   5  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
   6  * and including many others, as listed in the AUTHORS file in the
   7  * top-level source directory and at http://www.gromacs.org.
   8  *
   9  * GROMACS is free software; you can redistribute it and/or
  10  * modify it under the terms of the GNU Lesser General Public License
  11  * as published by the Free Software Foundation; either version 2.1
  12  * of the License, or (at your option) any later version.
  13  *
  14  * GROMACS is distributed in the hope that it will be useful,
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  17  * Lesser General Public License for more details.
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  35 /*
  36  * Note: this file was generated by the GROMACS c kernel generator.
  37  */
  38 #include "gmxpre.h"
  39
  40 #include "config.h"
  41
  42 #include <math.h>
  43
  44 #include "../nb_kernel.h"
  45 #include "gromacs/legacyheaders/types/simple.h"
  46 #include "gromacs/math/vec.h"
  47 #include "gromacs/legacyheaders/nrnb.h"
  48
  49 /*
  50  * Gromacs nonbonded kernel:   nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_VF_c
  51  * Electrostatics interaction: Ewald
  52  * VdW interaction:            LennardJones
  53  * Geometry:                   Particle-Particle
  54  * Calculate force/pot:        PotentialAndForce
  55  */
  56 void
  57 nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_VF_c
  58                     (t_nblist                    * gmx_restrict       nlist,
  59                      rvec                        * gmx_restrict          xx,
  60                      rvec                        * gmx_restrict          ff,
  61                      t_forcerec                  * gmx_restrict          fr,
  62                      t_mdatoms                   * gmx_restrict     mdatoms,
  63                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
  64                      t_nrnb                      * gmx_restrict        nrnb)
  65 {
  66     int              i_shift_offset,i_coord_offset,j_coord_offset;
  67     int              j_index_start,j_index_end;
  68     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
  69     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
  70     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
  71     real             *shiftvec,*fshift,*x,*f;
  72     int              vdwioffset0;
  73     real             ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
  74     int              vdwjidx0;
  75     real             jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
  76     real             dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
  77     real             velec,felec,velecsum,facel,crf,krf,krf2;
  78     real             *charge;
  79     int              nvdwtype;
  80     real             rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
  81     int              *vdwtype;
  82     real             *vdwparam;
  83     int              ewitab;
  84     real             ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace;
  85     real             *ewtab;
  86     real             rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
  87
  88     x                = xx[0];
  89     f                = ff[0];
  90
  91     nri              = nlist->nri;
  92     iinr             = nlist->iinr;
  93     jindex           = nlist->jindex;
  94     jjnr             = nlist->jjnr;
  95     shiftidx         = nlist->shift;
  96     gid              = nlist->gid;
  97     shiftvec         = fr->shift_vec[0];
  98     fshift           = fr->fshift[0];
  99     facel            = fr->epsfac;
 100     charge           = mdatoms->chargeA;
 101     nvdwtype         = fr->ntype;
 102     vdwparam         = fr->nbfp;
 103     vdwtype          = mdatoms->typeA;
 104
 105     sh_ewald         = fr->ic->sh_ewald;
 106     ewtab            = fr->ic->tabq_coul_FDV0;
 107     ewtabscale       = fr->ic->tabq_scale;
 108     ewtabhalfspace   = 0.5/ewtabscale;
 109
 110     /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
 111     rcutoff          = fr->rcoulomb;
 112     rcutoff2         = rcutoff*rcutoff;
 113
 114     rswitch          = fr->rcoulomb_switch;
 115     /* Setup switch parameters */
 116     d                = rcutoff-rswitch;
 117     swV3             = -10.0/(d*d*d);
 118     swV4             =  15.0/(d*d*d*d);
 119     swV5             =  -6.0/(d*d*d*d*d);
 120     swF2             = -30.0/(d*d*d);
 121     swF3             =  60.0/(d*d*d*d);
 122     swF4             = -30.0/(d*d*d*d*d);
 123
 124     outeriter        = 0;
 125     inneriter        = 0;
 126
 127     /* Start outer loop over neighborlists */
 128     for(iidx=0; iidx<nri; iidx++)
 129     {
 130         /* Load shift vector for this list */
 131         i_shift_offset   = DIM*shiftidx[iidx];
 132         shX              = shiftvec[i_shift_offset+XX];
 133         shY              = shiftvec[i_shift_offset+YY];
 134         shZ              = shiftvec[i_shift_offset+ZZ];
 135
 136         /* Load limits for loop over neighbors */
 137         j_index_start    = jindex[iidx];
 138         j_index_end      = jindex[iidx+1];
 139
 140         /* Get outer coordinate index */
 141         inr              = iinr[iidx];
 142         i_coord_offset   = DIM*inr;
 143
 144         /* Load i particle coords and add shift vector */
 145         ix0              = shX + x[i_coord_offset+DIM*0+XX];
 146         iy0              = shY + x[i_coord_offset+DIM*0+YY];
 147         iz0              = shZ + x[i_coord_offset+DIM*0+ZZ];
 148
 149         fix0             = 0.0;
 150         fiy0             = 0.0;
 151         fiz0             = 0.0;
 152
 153         /* Load parameters for i particles */
 154         iq0              = facel*charge[inr+0];
 155         vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
 156
 157         /* Reset potential sums */
 158         velecsum         = 0.0;
 159         vvdwsum          = 0.0;
 160
 161         /* Start inner kernel loop */
 162         for(jidx=j_index_start; jidx<j_index_end; jidx++)
 163         {
 164             /* Get j neighbor index, and coordinate index */
 165             jnr              = jjnr[jidx];
 166             j_coord_offset   = DIM*jnr;
 167
 168             /* load j atom coordinates */
 169             jx0              = x[j_coord_offset+DIM*0+XX];
 170             jy0              = x[j_coord_offset+DIM*0+YY];
 171             jz0              = x[j_coord_offset+DIM*0+ZZ];
 172
 173             /* Calculate displacement vector */
 174             dx00             = ix0 - jx0;
 175             dy00             = iy0 - jy0;
 176             dz00             = iz0 - jz0;
 177
 178             /* Calculate squared distance and things based on it */
 179             rsq00            = dx00*dx00+dy00*dy00+dz00*dz00;
 180
 181             rinv00           = gmx_invsqrt(rsq00);
 182
 183             rinvsq00         = rinv00*rinv00;
 184
 185             /* Load parameters for j particles */
 186             jq0              = charge[jnr+0];
 187             vdwjidx0         = 2*vdwtype[jnr+0];
 188
 189             /**************************
 190              * CALCULATE INTERACTIONS *
 191              **************************/
 192
 193             if (rsq00<rcutoff2)
 194             {
 195
 196             r00              = rsq00*rinv00;
 197
 198             qq00             = iq0*jq0;
 199             c6_00            = vdwparam[vdwioffset0+vdwjidx0];
 200             c12_00           = vdwparam[vdwioffset0+vdwjidx0+1];
 201
 202             /* EWALD ELECTROSTATICS */
 203
 204             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
 205             ewrt             = r00*ewtabscale;
 206             ewitab           = ewrt;
 207             eweps            = ewrt-ewitab;
 208             ewitab           = 4*ewitab;
 209             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
 210             velec            = qq00*(rinv00-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
 211             felec            = qq00*rinv00*(rinvsq00-felec);
 212
 213             /* LENNARD-JONES DISPERSION/REPULSION */
 214
 215             rinvsix          = rinvsq00*rinvsq00*rinvsq00;
 216             vvdw6            = c6_00*rinvsix;
 217             vvdw12           = c12_00*rinvsix*rinvsix;
 218             vvdw             = vvdw12*(1.0/12.0) - vvdw6*(1.0/6.0);
 219             fvdw             = (vvdw12-vvdw6)*rinvsq00;
 220
 221             d                = r00-rswitch;
 222             d                = (d>0.0) ? d : 0.0;
 223             d2               = d*d;
 224             sw               = 1.0+d2*d*(swV3+d*(swV4+d*swV5));
 225
 226             dsw              = d2*(swF2+d*(swF3+d*swF4));
 227
 228             /* Evaluate switch function */
 229             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
 230             felec            = felec*sw - rinv00*velec*dsw;
 231             fvdw             = fvdw*sw - rinv00*vvdw*dsw;
 232             velec           *= sw;
 233             vvdw            *= sw;
 234
 235             /* Update potential sums from outer loop */
 236             velecsum        += velec;
 237             vvdwsum         += vvdw;
 238
 239             fscal            = felec+fvdw;
 240
 241             /* Calculate temporary vectorial force */
 242             tx               = fscal*dx00;
 243             ty               = fscal*dy00;
 244             tz               = fscal*dz00;
 245
 246             /* Update vectorial force */
 247             fix0            += tx;
 248             fiy0            += ty;
 249             fiz0            += tz;
 250             f[j_coord_offset+DIM*0+XX] -= tx;
 251             f[j_coord_offset+DIM*0+YY] -= ty;
 252             f[j_coord_offset+DIM*0+ZZ] -= tz;
 253
 254             }
 255
 256             /* Inner loop uses 75 flops */
 257         }
 258         /* End of innermost loop */
 259
 260         tx = ty = tz = 0;
 261         f[i_coord_offset+DIM*0+XX] += fix0;
 262         f[i_coord_offset+DIM*0+YY] += fiy0;
 263         f[i_coord_offset+DIM*0+ZZ] += fiz0;
 264         tx                         += fix0;
 265         ty                         += fiy0;
 266         tz                         += fiz0;
 267         fshift[i_shift_offset+XX]  += tx;
 268         fshift[i_shift_offset+YY]  += ty;
 269         fshift[i_shift_offset+ZZ]  += tz;
 270
 271         ggid                        = gid[iidx];
 272         /* Update potential energies */
 273         kernel_data->energygrp_elec[ggid] += velecsum;
 274         kernel_data->energygrp_vdw[ggid] += vvdwsum;
 275
 276         /* Increment number of inner iterations */
 277         inneriter                  += j_index_end - j_index_start;
 278
 279         /* Outer loop uses 15 flops */
 280     }
 281
 282     /* Increment number of outer iterations */
 283     outeriter        += nri;
 284
 285     /* Update outer/inner flops */
 286
 287     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*15 + inneriter*75);
 288 }
 289 /*
 290  * Gromacs nonbonded kernel:   nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_F_c
 291  * Electrostatics interaction: Ewald
 292  * VdW interaction:            LennardJones
 293  * Geometry:                   Particle-Particle
 294  * Calculate force/pot:        Force
 295  */
 296 void
 297 nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_F_c
 298                     (t_nblist                    * gmx_restrict       nlist,
 299                      rvec                        * gmx_restrict          xx,
 300                      rvec                        * gmx_restrict          ff,
 301                      t_forcerec                  * gmx_restrict          fr,
 302                      t_mdatoms                   * gmx_restrict     mdatoms,
 303                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
 304                      t_nrnb                      * gmx_restrict        nrnb)
 305 {
 306     int              i_shift_offset,i_coord_offset,j_coord_offset;
 307     int              j_index_start,j_index_end;
 308     int              nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
 309     real             shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
 310     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
 311     real             *shiftvec,*fshift,*x,*f;
 312     int              vdwioffset0;
 313     real             ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
 314     int              vdwjidx0;
 315     real             jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
 316     real             dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
 317     real             velec,felec,velecsum,facel,crf,krf,krf2;
 318     real             *charge;
 319     int              nvdwtype;
 320     real             rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
 321     int              *vdwtype;
 322     real             *vdwparam;
 323     int              ewitab;
 324     real             ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace;
 325     real             *ewtab;
 326     real             rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
 327
 328     x                = xx[0];
 329     f                = ff[0];
 330
 331     nri              = nlist->nri;
 332     iinr             = nlist->iinr;
 333     jindex           = nlist->jindex;
 334     jjnr             = nlist->jjnr;
 335     shiftidx         = nlist->shift;
 336     gid              = nlist->gid;
 337     shiftvec         = fr->shift_vec[0];
 338     fshift           = fr->fshift[0];
 339     facel            = fr->epsfac;
 340     charge           = mdatoms->chargeA;
 341     nvdwtype         = fr->ntype;
 342     vdwparam         = fr->nbfp;
 343     vdwtype          = mdatoms->typeA;
 344
 345     sh_ewald         = fr->ic->sh_ewald;
 346     ewtab            = fr->ic->tabq_coul_FDV0;
 347     ewtabscale       = fr->ic->tabq_scale;
 348     ewtabhalfspace   = 0.5/ewtabscale;
 349
 350     /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
 351     rcutoff          = fr->rcoulomb;
 352     rcutoff2         = rcutoff*rcutoff;
 353
 354     rswitch          = fr->rcoulomb_switch;
 355     /* Setup switch parameters */
 356     d                = rcutoff-rswitch;
 357     swV3             = -10.0/(d*d*d);
 358     swV4             =  15.0/(d*d*d*d);
 359     swV5             =  -6.0/(d*d*d*d*d);
 360     swF2             = -30.0/(d*d*d);
 361     swF3             =  60.0/(d*d*d*d);
 362     swF4             = -30.0/(d*d*d*d*d);
 363
 364     outeriter        = 0;
 365     inneriter        = 0;
 366
 367     /* Start outer loop over neighborlists */
 368     for(iidx=0; iidx<nri; iidx++)
 369     {
 370         /* Load shift vector for this list */
 371         i_shift_offset   = DIM*shiftidx[iidx];
 372         shX              = shiftvec[i_shift_offset+XX];
 373         shY              = shiftvec[i_shift_offset+YY];
 374         shZ              = shiftvec[i_shift_offset+ZZ];
 375
 376         /* Load limits for loop over neighbors */
 377         j_index_start    = jindex[iidx];
 378         j_index_end      = jindex[iidx+1];
 379
 380         /* Get outer coordinate index */
 381         inr              = iinr[iidx];
 382         i_coord_offset   = DIM*inr;
 383
 384         /* Load i particle coords and add shift vector */
 385         ix0              = shX + x[i_coord_offset+DIM*0+XX];
 386         iy0              = shY + x[i_coord_offset+DIM*0+YY];
 387         iz0              = shZ + x[i_coord_offset+DIM*0+ZZ];
 388
 389         fix0             = 0.0;
 390         fiy0             = 0.0;
 391         fiz0             = 0.0;
 392
 393         /* Load parameters for i particles */
 394         iq0              = facel*charge[inr+0];
 395         vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
 396
 397         /* Start inner kernel loop */
 398         for(jidx=j_index_start; jidx<j_index_end; jidx++)
 399         {
 400             /* Get j neighbor index, and coordinate index */
 401             jnr              = jjnr[jidx];
 402             j_coord_offset   = DIM*jnr;
 403
 404             /* load j atom coordinates */
 405             jx0              = x[j_coord_offset+DIM*0+XX];
 406             jy0              = x[j_coord_offset+DIM*0+YY];
 407             jz0              = x[j_coord_offset+DIM*0+ZZ];
 408
 409             /* Calculate displacement vector */
 410             dx00             = ix0 - jx0;
 411             dy00             = iy0 - jy0;
 412             dz00             = iz0 - jz0;
 413
 414             /* Calculate squared distance and things based on it */
 415             rsq00            = dx00*dx00+dy00*dy00+dz00*dz00;
 416
 417             rinv00           = gmx_invsqrt(rsq00);
 418
 419             rinvsq00         = rinv00*rinv00;
 420
 421             /* Load parameters for j particles */
 422             jq0              = charge[jnr+0];
 423             vdwjidx0         = 2*vdwtype[jnr+0];
 424
 425             /**************************
 426              * CALCULATE INTERACTIONS *
 427              **************************/
 428
 429             if (rsq00<rcutoff2)
 430             {
 431
 432             r00              = rsq00*rinv00;
 433
 434             qq00             = iq0*jq0;
 435             c6_00            = vdwparam[vdwioffset0+vdwjidx0];
 436             c12_00           = vdwparam[vdwioffset0+vdwjidx0+1];
 437
 438             /* EWALD ELECTROSTATICS */
 439
 440             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
 441             ewrt             = r00*ewtabscale;
 442             ewitab           = ewrt;
 443             eweps            = ewrt-ewitab;
 444             ewitab           = 4*ewitab;
 445             felec            = ewtab[ewitab]+eweps*ewtab[ewitab+1];
 446             velec            = qq00*(rinv00-(ewtab[ewitab+2]-ewtabhalfspace*eweps*(ewtab[ewitab]+felec)));
 447             felec            = qq00*rinv00*(rinvsq00-felec);
 448
 449             /* LENNARD-JONES DISPERSION/REPULSION */
 450
 451             rinvsix          = rinvsq00*rinvsq00*rinvsq00;
 452             vvdw6            = c6_00*rinvsix;
 453             vvdw12           = c12_00*rinvsix*rinvsix;
 454             vvdw             = vvdw12*(1.0/12.0) - vvdw6*(1.0/6.0);
 455             fvdw             = (vvdw12-vvdw6)*rinvsq00;
 456
 457             d                = r00-rswitch;
 458             d                = (d>0.0) ? d : 0.0;
 459             d2               = d*d;
 460             sw               = 1.0+d2*d*(swV3+d*(swV4+d*swV5));
 461
 462             dsw              = d2*(swF2+d*(swF3+d*swF4));
 463
 464             /* Evaluate switch function */
 465             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
 466             felec            = felec*sw - rinv00*velec*dsw;
 467             fvdw             = fvdw*sw - rinv00*vvdw*dsw;
 468
 469             fscal            = felec+fvdw;
 470
 471             /* Calculate temporary vectorial force */
 472             tx               = fscal*dx00;
 473             ty               = fscal*dy00;
 474             tz               = fscal*dz00;
 475
 476             /* Update vectorial force */
 477             fix0            += tx;
 478             fiy0            += ty;
 479             fiz0            += tz;
 480             f[j_coord_offset+DIM*0+XX] -= tx;
 481             f[j_coord_offset+DIM*0+YY] -= ty;
 482             f[j_coord_offset+DIM*0+ZZ] -= tz;
 483
 484             }
 485
 486             /* Inner loop uses 71 flops */
 487         }
 488         /* End of innermost loop */
 489
 490         tx = ty = tz = 0;
 491         f[i_coord_offset+DIM*0+XX] += fix0;
 492         f[i_coord_offset+DIM*0+YY] += fiy0;
 493         f[i_coord_offset+DIM*0+ZZ] += fiz0;
 494         tx                         += fix0;
 495         ty                         += fiy0;
 496         tz                         += fiz0;
 497         fshift[i_shift_offset+XX]  += tx;
 498         fshift[i_shift_offset+YY]  += ty;
 499         fshift[i_shift_offset+ZZ]  += tz;
 500
 501         /* Increment number of inner iterations */
 502         inneriter                  += j_index_end - j_index_start;
 503
 504         /* Outer loop uses 13 flops */
 505     }
 506
 507     /* Increment number of outer iterations */
 508     outeriter        += nri;
 509
 510     /* Update outer/inner flops */
 511
 512     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*13 + inneriter*71);
 513 }