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36 * Note: this file was generated by the GROMACS c kernel generator.
44 #include "../nb_kernel.h"
45 #include "types/simple.h"
46 #include "gromacs/math/vec.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwBham_GeomP1P1_VF_c
51 * Electrostatics interaction: Coulomb
52 * VdW interaction: Buckingham
53 * Geometry: Particle-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCoul_VdwBham_GeomP1P1_VF_c
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 int i_shift_offset,i_coord_offset,j_coord_offset;
67 int j_index_start,j_index_end;
68 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
69 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
70 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
71 real *shiftvec,*fshift,*x,*f;
73 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
75 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
76 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
77 real velec,felec,velecsum,facel,crf,krf,krf2;
80 real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
89 jindex = nlist->jindex;
91 shiftidx = nlist->shift;
93 shiftvec = fr->shift_vec[0];
94 fshift = fr->fshift[0];
96 charge = mdatoms->chargeA;
99 vdwtype = mdatoms->typeA;
104 /* Start outer loop over neighborlists */
105 for(iidx=0; iidx<nri; iidx++)
107 /* Load shift vector for this list */
108 i_shift_offset = DIM*shiftidx[iidx];
109 shX = shiftvec[i_shift_offset+XX];
110 shY = shiftvec[i_shift_offset+YY];
111 shZ = shiftvec[i_shift_offset+ZZ];
113 /* Load limits for loop over neighbors */
114 j_index_start = jindex[iidx];
115 j_index_end = jindex[iidx+1];
117 /* Get outer coordinate index */
119 i_coord_offset = DIM*inr;
121 /* Load i particle coords and add shift vector */
122 ix0 = shX + x[i_coord_offset+DIM*0+XX];
123 iy0 = shY + x[i_coord_offset+DIM*0+YY];
124 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
130 /* Load parameters for i particles */
131 iq0 = facel*charge[inr+0];
132 vdwioffset0 = 3*nvdwtype*vdwtype[inr+0];
134 /* Reset potential sums */
138 /* Start inner kernel loop */
139 for(jidx=j_index_start; jidx<j_index_end; jidx++)
141 /* Get j neighbor index, and coordinate index */
143 j_coord_offset = DIM*jnr;
145 /* load j atom coordinates */
146 jx0 = x[j_coord_offset+DIM*0+XX];
147 jy0 = x[j_coord_offset+DIM*0+YY];
148 jz0 = x[j_coord_offset+DIM*0+ZZ];
150 /* Calculate displacement vector */
155 /* Calculate squared distance and things based on it */
156 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
158 rinv00 = gmx_invsqrt(rsq00);
160 rinvsq00 = rinv00*rinv00;
162 /* Load parameters for j particles */
164 vdwjidx0 = 3*vdwtype[jnr+0];
166 /**************************
167 * CALCULATE INTERACTIONS *
168 **************************/
173 c6_00 = vdwparam[vdwioffset0+vdwjidx0];
174 cexp1_00 = vdwparam[vdwioffset0+vdwjidx0+1];
175 cexp2_00 = vdwparam[vdwioffset0+vdwjidx0+2];
177 /* COULOMB ELECTROSTATICS */
179 felec = velec*rinvsq00;
181 /* BUCKINGHAM DISPERSION/REPULSION */
182 rinvsix = rinvsq00*rinvsq00*rinvsq00;
183 vvdw6 = c6_00*rinvsix;
185 vvdwexp = cexp1_00*exp(-br);
186 vvdw = vvdwexp - vvdw6*(1.0/6.0);
187 fvdw = (br*vvdwexp-vvdw6)*rinvsq00;
189 /* Update potential sums from outer loop */
195 /* Calculate temporary vectorial force */
200 /* Update vectorial force */
204 f[j_coord_offset+DIM*0+XX] -= tx;
205 f[j_coord_offset+DIM*0+YY] -= ty;
206 f[j_coord_offset+DIM*0+ZZ] -= tz;
208 /* Inner loop uses 67 flops */
210 /* End of innermost loop */
213 f[i_coord_offset+DIM*0+XX] += fix0;
214 f[i_coord_offset+DIM*0+YY] += fiy0;
215 f[i_coord_offset+DIM*0+ZZ] += fiz0;
219 fshift[i_shift_offset+XX] += tx;
220 fshift[i_shift_offset+YY] += ty;
221 fshift[i_shift_offset+ZZ] += tz;
224 /* Update potential energies */
225 kernel_data->energygrp_elec[ggid] += velecsum;
226 kernel_data->energygrp_vdw[ggid] += vvdwsum;
228 /* Increment number of inner iterations */
229 inneriter += j_index_end - j_index_start;
231 /* Outer loop uses 15 flops */
234 /* Increment number of outer iterations */
237 /* Update outer/inner flops */
239 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*15 + inneriter*67);
242 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwBham_GeomP1P1_F_c
243 * Electrostatics interaction: Coulomb
244 * VdW interaction: Buckingham
245 * Geometry: Particle-Particle
246 * Calculate force/pot: Force
249 nb_kernel_ElecCoul_VdwBham_GeomP1P1_F_c
250 (t_nblist * gmx_restrict nlist,
251 rvec * gmx_restrict xx,
252 rvec * gmx_restrict ff,
253 t_forcerec * gmx_restrict fr,
254 t_mdatoms * gmx_restrict mdatoms,
255 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
256 t_nrnb * gmx_restrict nrnb)
258 int i_shift_offset,i_coord_offset,j_coord_offset;
259 int j_index_start,j_index_end;
260 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
261 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
262 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
263 real *shiftvec,*fshift,*x,*f;
265 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
267 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
268 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
269 real velec,felec,velecsum,facel,crf,krf,krf2;
272 real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
281 jindex = nlist->jindex;
283 shiftidx = nlist->shift;
285 shiftvec = fr->shift_vec[0];
286 fshift = fr->fshift[0];
288 charge = mdatoms->chargeA;
289 nvdwtype = fr->ntype;
291 vdwtype = mdatoms->typeA;
296 /* Start outer loop over neighborlists */
297 for(iidx=0; iidx<nri; iidx++)
299 /* Load shift vector for this list */
300 i_shift_offset = DIM*shiftidx[iidx];
301 shX = shiftvec[i_shift_offset+XX];
302 shY = shiftvec[i_shift_offset+YY];
303 shZ = shiftvec[i_shift_offset+ZZ];
305 /* Load limits for loop over neighbors */
306 j_index_start = jindex[iidx];
307 j_index_end = jindex[iidx+1];
309 /* Get outer coordinate index */
311 i_coord_offset = DIM*inr;
313 /* Load i particle coords and add shift vector */
314 ix0 = shX + x[i_coord_offset+DIM*0+XX];
315 iy0 = shY + x[i_coord_offset+DIM*0+YY];
316 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
322 /* Load parameters for i particles */
323 iq0 = facel*charge[inr+0];
324 vdwioffset0 = 3*nvdwtype*vdwtype[inr+0];
326 /* Start inner kernel loop */
327 for(jidx=j_index_start; jidx<j_index_end; jidx++)
329 /* Get j neighbor index, and coordinate index */
331 j_coord_offset = DIM*jnr;
333 /* load j atom coordinates */
334 jx0 = x[j_coord_offset+DIM*0+XX];
335 jy0 = x[j_coord_offset+DIM*0+YY];
336 jz0 = x[j_coord_offset+DIM*0+ZZ];
338 /* Calculate displacement vector */
343 /* Calculate squared distance and things based on it */
344 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
346 rinv00 = gmx_invsqrt(rsq00);
348 rinvsq00 = rinv00*rinv00;
350 /* Load parameters for j particles */
352 vdwjidx0 = 3*vdwtype[jnr+0];
354 /**************************
355 * CALCULATE INTERACTIONS *
356 **************************/
361 c6_00 = vdwparam[vdwioffset0+vdwjidx0];
362 cexp1_00 = vdwparam[vdwioffset0+vdwjidx0+1];
363 cexp2_00 = vdwparam[vdwioffset0+vdwjidx0+2];
365 /* COULOMB ELECTROSTATICS */
367 felec = velec*rinvsq00;
369 /* BUCKINGHAM DISPERSION/REPULSION */
370 rinvsix = rinvsq00*rinvsq00*rinvsq00;
371 vvdw6 = c6_00*rinvsix;
373 vvdwexp = cexp1_00*exp(-br);
374 fvdw = (br*vvdwexp-vvdw6)*rinvsq00;
378 /* Calculate temporary vectorial force */
383 /* Update vectorial force */
387 f[j_coord_offset+DIM*0+XX] -= tx;
388 f[j_coord_offset+DIM*0+YY] -= ty;
389 f[j_coord_offset+DIM*0+ZZ] -= tz;
391 /* Inner loop uses 63 flops */
393 /* End of innermost loop */
396 f[i_coord_offset+DIM*0+XX] += fix0;
397 f[i_coord_offset+DIM*0+YY] += fiy0;
398 f[i_coord_offset+DIM*0+ZZ] += fiz0;
402 fshift[i_shift_offset+XX] += tx;
403 fshift[i_shift_offset+YY] += ty;
404 fshift[i_shift_offset+ZZ] += tz;
406 /* Increment number of inner iterations */
407 inneriter += j_index_end - j_index_start;
409 /* Outer loop uses 13 flops */
412 /* Increment number of outer iterations */
415 /* Update outer/inner flops */
417 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*13 + inneriter*63);