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36 #error This file must be processed with the Gromacs pre-preprocessor
38 /* #if INCLUDE_HEADER */
45 #include "../nb_kernel.h"
46 #include "gromacs/gmxlib/nrnb.h"
48 #include "kernelutil_x86_avx_256_single.h"
51 /* ## List of variables set by the generating script: */
53 /* ## Setttings that apply to the entire kernel: */
54 /* ## KERNEL_ELEC: String, choice for electrostatic interactions */
55 /* ## KERNEL_VDW: String, choice for van der Waals interactions */
56 /* ## KERNEL_NAME: String, name of this kernel */
57 /* ## KERNEL_VF: String telling if we calculate potential, force, or both */
58 /* ## GEOMETRY_I/GEOMETRY_J: String, name of each geometry, e.g. 'Water3' or '1Particle' */
60 /* ## Setttings that apply to particles in the outer (I) or inner (J) loops: */
61 /* ## PARTICLES_I[]/ Arrays with lists of i/j particles to use in kernel. It is */
62 /* ## PARTICLES_J[]: just [0] for particle geometry, but can be longer for water */
63 /* ## PARTICLES_ELEC_I[]/ Arrays with lists of i/j particle that have electrostatics */
64 /* ## PARTICLES_ELEC_J[]: interactions that should be calculated in this kernel. */
65 /* ## PARTICLES_VDW_I[]/ Arrays with the list of i/j particle that have VdW */
66 /* ## PARTICLES_VDW_J[]: interactions that should be calculated in this kernel. */
68 /* ## Setttings for pairs of interactions (e.g. 2nd i particle against 1st j particle) */
69 /* ## PAIRS_IJ[]: Array with (i,j) tuples of pairs for which interactions */
70 /* ## should be calculated in this kernel. Zero-charge particles */
71 /* ## do not have interactions with particles without vdw, and */
72 /* ## Vdw-only interactions are not evaluated in a no-vdw-kernel. */
73 /* ## INTERACTION_FLAGS[][]: 2D matrix, dimension e.g. 3*3 for water-water interactions. */
74 /* ## For each i-j pair, the element [I][J] is a list of strings */
75 /* ## defining properties/flags of this interaction. Examples */
76 /* ## include 'electrostatics'/'vdw' if that type of interaction */
77 /* ## should be evaluated, 'rsq'/'rinv'/'rinvsq' if those values */
78 /* ## are needed, and 'exactcutoff' or 'shift','switch' to */
79 /* ## decide if the force/potential should be modified. This way */
80 /* ## we only calculate values absolutely needed for each case. */
82 /* ## Calculate the size and offset for (merged/interleaved) table data */
88 * Gromacs nonbonded kernel: {KERNEL_NAME}
89 * Electrostatics interaction: {KERNEL_ELEC}
90 * VdW interaction: {KERNEL_VDW}
91 * Geometry: {GEOMETRY_I}-{GEOMETRY_J}
92 * Calculate force/pot: {KERNEL_VF}
96 (t_nblist * gmx_restrict nlist,
97 rvec * gmx_restrict xx,
98 rvec * gmx_restrict ff,
99 struct t_forcerec * gmx_restrict fr,
100 t_mdatoms * gmx_restrict mdatoms,
101 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
102 t_nrnb * gmx_restrict nrnb)
104 /* ## Not all variables are used for all kernels, but any optimizing compiler fixes that, */
105 /* ## so there is no point in going to extremes to exclude variables that are not needed. */
106 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
107 * just 0 for non-waters.
108 * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
109 * jnr indices corresponding to data put in the four positions in the SIMD register.
111 int i_shift_offset,i_coord_offset,outeriter,inneriter;
112 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
113 int jnrA,jnrB,jnrC,jnrD;
114 int jnrE,jnrF,jnrG,jnrH;
115 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
116 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
117 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
118 int j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
119 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
121 real *shiftvec,*fshift,*x,*f;
122 real *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
124 __m256 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
125 /* #for I in PARTICLES_I */
126 real * vdwioffsetptr{I};
127 /* #if 'LJEwald' in KERNEL_VDW */
128 real * vdwgridioffsetptr{I};
130 __m256 ix{I},iy{I},iz{I},fix{I},fiy{I},fiz{I},iq{I},isai{I};
132 /* #for J in PARTICLES_J */
133 int vdwjidx{J}A,vdwjidx{J}B,vdwjidx{J}C,vdwjidx{J}D,vdwjidx{J}E,vdwjidx{J}F,vdwjidx{J}G,vdwjidx{J}H;
134 __m256 jx{J},jy{J},jz{J},fjx{J},fjy{J},fjz{J},jq{J},isaj{J};
136 /* #for I,J in PAIRS_IJ */
137 __m256 dx{I}{J},dy{I}{J},dz{I}{J},rsq{I}{J},rinv{I}{J},rinvsq{I}{J},r{I}{J},qq{I}{J},c6_{I}{J},c12_{I}{J};
139 /* #if KERNEL_ELEC != 'None' */
140 __m256 velec,felec,velecsum,facel,crf,krf,krf2;
143 /* #if KERNEL_VDW != 'None' */
145 __m256 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
148 __m256 one_sixth = _mm256_set1_ps(1.0/6.0);
149 __m256 one_twelfth = _mm256_set1_ps(1.0/12.0);
151 /* #if 'Table' in KERNEL_ELEC or 'Table' in KERNEL_VDW */
153 __m128i vfitab_lo,vfitab_hi;
154 __m128i ifour = _mm_set1_epi32(4);
155 __m256 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
158 /* #if 'LJEwald' in KERNEL_VDW */
159 /* #for I,J in PAIRS_IJ */
160 __m256 c6grid_{I}{J};
163 __m256 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
164 __m256 one_half = _mm256_set1_ps(0.5);
165 __m256 minus_one = _mm256_set1_ps(-1.0);
167 /* #if 'Ewald' in KERNEL_ELEC */
169 __m128i ewitab_lo,ewitab_hi;
170 __m256 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
171 __m256 beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
174 /* #if 'PotentialSwitch' in [KERNEL_MOD_ELEC,KERNEL_MOD_VDW] */
175 __m256 rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
176 real rswitch_scalar,d_scalar;
178 __m256 dummy_mask,cutoff_mask;
179 __m256 signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
180 __m256 one = _mm256_set1_ps(1.0);
181 __m256 two = _mm256_set1_ps(2.0);
187 jindex = nlist->jindex;
189 shiftidx = nlist->shift;
191 shiftvec = fr->shift_vec[0];
192 fshift = fr->fshift[0];
193 /* #if KERNEL_ELEC != 'None' */
194 facel = _mm256_set1_ps(fr->ic->epsfac);
195 charge = mdatoms->chargeA;
196 /* #if 'ReactionField' in KERNEL_ELEC */
197 krf = _mm256_set1_ps(fr->ic->k_rf);
198 krf2 = _mm256_set1_ps(fr->ic->k_rf*2.0);
199 crf = _mm256_set1_ps(fr->ic->c_rf);
202 /* #if KERNEL_VDW != 'None' */
203 nvdwtype = fr->ntype;
205 vdwtype = mdatoms->typeA;
207 /* #if 'LJEwald' in KERNEL_VDW */
208 vdwgridparam = fr->ljpme_c6grid;
209 sh_lj_ewald = _mm256_set1_ps(fr->ic->sh_lj_ewald);
210 ewclj = _mm256_set1_ps(fr->ic->ewaldcoeff_lj);
211 ewclj2 = _mm256_mul_ps(minus_one,_mm256_mul_ps(ewclj,ewclj));
214 /* #if 'Table' in KERNEL_ELEC and 'Table' in KERNEL_VDW */
215 vftab = kernel_data->table_elec_vdw->data;
216 vftabscale = _mm256_set1_ps(kernel_data->table_elec_vdw->scale);
217 /* #elif 'Table' in KERNEL_ELEC */
218 vftab = kernel_data->table_elec->data;
219 vftabscale = _mm256_set1_ps(kernel_data->table_elec->scale);
220 /* #elif 'Table' in KERNEL_VDW */
221 vftab = kernel_data->table_vdw->data;
222 vftabscale = _mm256_set1_ps(kernel_data->table_vdw->scale);
225 /* #if 'Ewald' in KERNEL_ELEC */
226 sh_ewald = _mm256_set1_ps(fr->ic->sh_ewald);
227 beta = _mm256_set1_ps(fr->ic->ewaldcoeff_q);
228 beta2 = _mm256_mul_ps(beta,beta);
229 beta3 = _mm256_mul_ps(beta,beta2);
231 /* #if KERNEL_VF=='Force' and KERNEL_MOD_ELEC!='PotentialSwitch' */
232 ewtab = fr->ic->tabq_coul_F;
233 ewtabscale = _mm256_set1_ps(fr->ic->tabq_scale);
234 ewtabhalfspace = _mm256_set1_ps(0.5/fr->ic->tabq_scale);
236 ewtab = fr->ic->tabq_coul_FDV0;
237 ewtabscale = _mm256_set1_ps(fr->ic->tabq_scale);
238 ewtabhalfspace = _mm256_set1_ps(0.5/fr->ic->tabq_scale);
242 /* #if 'Water' in GEOMETRY_I */
243 /* Setup water-specific parameters */
244 inr = nlist->iinr[0];
245 /* #for I in PARTICLES_ELEC_I */
246 iq{I} = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+{I}]));
248 /* #for I in PARTICLES_VDW_I */
249 vdwioffsetptr{I} = vdwparam+2*nvdwtype*vdwtype[inr+{I}];
250 /* #if 'LJEwald' in KERNEL_VDW */
251 vdwgridioffsetptr{I} = vdwgridparam+2*nvdwtype*vdwtype[inr+{I}];
256 /* #if 'Water' in GEOMETRY_J */
257 /* #for J in PARTICLES_ELEC_J */
258 jq{J} = _mm256_set1_ps(charge[inr+{J}]);
260 /* #for J in PARTICLES_VDW_J */
261 vdwjidx{J}A = 2*vdwtype[inr+{J}];
263 /* #for I,J in PAIRS_IJ */
264 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
265 qq{I}{J} = _mm256_mul_ps(iq{I},jq{J});
267 /* #if 'vdw' in INTERACTION_FLAGS[I][J] */
268 /* #if 'LJEwald' in KERNEL_VDW */
269 c6_{I}{J} = _mm256_set1_ps(vdwioffsetptr{I}[vdwjidx{J}A]);
270 c12_{I}{J} = _mm256_set1_ps(vdwioffsetptr{I}[vdwjidx{J}A+1]);
271 c6grid_{I}{J} = _mm256_set1_ps(vdwgridioffsetptr{I}[vdwjidx{J}A]);
273 c6_{I}{J} = _mm256_set1_ps(vdwioffsetptr{I}[vdwjidx{J}A]);
274 c12_{I}{J} = _mm256_set1_ps(vdwioffsetptr{I}[vdwjidx{J}A+1]);
280 /* #if KERNEL_MOD_ELEC!='None' or KERNEL_MOD_VDW!='None' */
281 /* #if KERNEL_ELEC!='None' */
282 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
283 rcutoff_scalar = fr->ic->rcoulomb;
285 rcutoff_scalar = fr->ic->rvdw;
287 rcutoff = _mm256_set1_ps(rcutoff_scalar);
288 rcutoff2 = _mm256_mul_ps(rcutoff,rcutoff);
291 /* #if KERNEL_MOD_VDW=='PotentialShift' */
292 sh_vdw_invrcut6 = _mm256_set1_ps(fr->ic->sh_invrc6);
293 rvdw = _mm256_set1_ps(fr->ic->rvdw);
296 /* #if 'PotentialSwitch' in [KERNEL_MOD_ELEC,KERNEL_MOD_VDW] */
297 /* #if KERNEL_MOD_ELEC=='PotentialSwitch' */
298 rswitch_scalar = fr->ic->rcoulomb_switch;
299 rswitch = _mm256_set1_ps(rswitch_scalar);
301 rswitch_scalar = fr->ic->rvdw_switch;
302 rswitch = _mm256_set1_ps(rswitch_scalar);
304 /* Setup switch parameters */
305 d_scalar = rcutoff_scalar-rswitch_scalar;
306 d = _mm256_set1_ps(d_scalar);
307 swV3 = _mm256_set1_ps(-10.0/(d_scalar*d_scalar*d_scalar));
308 swV4 = _mm256_set1_ps( 15.0/(d_scalar*d_scalar*d_scalar*d_scalar));
309 swV5 = _mm256_set1_ps( -6.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
310 /* #if 'Force' in KERNEL_VF */
311 swF2 = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar));
312 swF3 = _mm256_set1_ps( 60.0/(d_scalar*d_scalar*d_scalar*d_scalar));
313 swF4 = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
317 /* Avoid stupid compiler warnings */
318 jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
328 /* ## Keep track of the floating point operations we issue for reporting! */
329 /* #define OUTERFLOPS 0 */
333 for(iidx=0;iidx<4*DIM;iidx++)
338 /* Start outer loop over neighborlists */
339 for(iidx=0; iidx<nri; iidx++)
341 /* Load shift vector for this list */
342 i_shift_offset = DIM*shiftidx[iidx];
344 /* Load limits for loop over neighbors */
345 j_index_start = jindex[iidx];
346 j_index_end = jindex[iidx+1];
348 /* Get outer coordinate index */
350 i_coord_offset = DIM*inr;
352 /* Load i particle coords and add shift vector */
353 /* #if GEOMETRY_I == 'Particle' */
354 gmx_mm256_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
355 /* #elif GEOMETRY_I == 'Water3' */
356 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
357 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
358 /* #elif GEOMETRY_I == 'Water4' */
359 /* #if 0 in PARTICLES_I */
360 gmx_mm256_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
361 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
363 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset+DIM,
364 &ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
368 /* #if 'Force' in KERNEL_VF */
369 /* #for I in PARTICLES_I */
370 fix{I} = _mm256_setzero_ps();
371 fiy{I} = _mm256_setzero_ps();
372 fiz{I} = _mm256_setzero_ps();
376 /* ## For water we already preloaded parameters at the start of the kernel */
377 /* #if not 'Water' in GEOMETRY_I */
378 /* Load parameters for i particles */
379 /* #for I in PARTICLES_ELEC_I */
380 iq{I} = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+{I}]));
381 /* #define OUTERFLOPS OUTERFLOPS+1 */
383 /* #for I in PARTICLES_VDW_I */
384 vdwioffsetptr{I} = vdwparam+2*nvdwtype*vdwtype[inr+{I}];
385 /* #if 'LJEwald' in KERNEL_VDW */
386 vdwgridioffsetptr{I} = vdwgridparam+2*nvdwtype*vdwtype[inr+{I}];
391 /* #if 'Potential' in KERNEL_VF */
392 /* Reset potential sums */
393 /* #if KERNEL_ELEC != 'None' */
394 velecsum = _mm256_setzero_ps();
396 /* #if KERNEL_VDW != 'None' */
397 vvdwsum = _mm256_setzero_ps();
401 /* #for ROUND in ['Loop','Epilogue'] */
403 /* #if ROUND =='Loop' */
404 /* Start inner kernel loop */
405 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
407 /* ## First round is normal loop (next statement resets indentation) */
414 /* ## Second round is epilogue */
416 /* #define INNERFLOPS 0 */
418 /* Get j neighbor index, and coordinate index */
419 /* #if ROUND =='Loop' */
429 jnrlistA = jjnr[jidx];
430 jnrlistB = jjnr[jidx+1];
431 jnrlistC = jjnr[jidx+2];
432 jnrlistD = jjnr[jidx+3];
433 jnrlistE = jjnr[jidx+4];
434 jnrlistF = jjnr[jidx+5];
435 jnrlistG = jjnr[jidx+6];
436 jnrlistH = jjnr[jidx+7];
437 /* Sign of each element will be negative for non-real atoms.
438 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
439 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
441 dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
442 gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
444 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
445 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
446 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
447 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
448 jnrE = (jnrlistE>=0) ? jnrlistE : 0;
449 jnrF = (jnrlistF>=0) ? jnrlistF : 0;
450 jnrG = (jnrlistG>=0) ? jnrlistG : 0;
451 jnrH = (jnrlistH>=0) ? jnrlistH : 0;
453 j_coord_offsetA = DIM*jnrA;
454 j_coord_offsetB = DIM*jnrB;
455 j_coord_offsetC = DIM*jnrC;
456 j_coord_offsetD = DIM*jnrD;
457 j_coord_offsetE = DIM*jnrE;
458 j_coord_offsetF = DIM*jnrF;
459 j_coord_offsetG = DIM*jnrG;
460 j_coord_offsetH = DIM*jnrH;
462 /* load j atom coordinates */
463 /* #if GEOMETRY_J == 'Particle' */
464 gmx_mm256_load_1rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
465 x+j_coord_offsetC,x+j_coord_offsetD,
466 x+j_coord_offsetE,x+j_coord_offsetF,
467 x+j_coord_offsetG,x+j_coord_offsetH,
469 /* #elif GEOMETRY_J == 'Water3' */
470 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
471 x+j_coord_offsetC,x+j_coord_offsetD,
472 x+j_coord_offsetE,x+j_coord_offsetF,
473 x+j_coord_offsetG,x+j_coord_offsetH,
474 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
475 /* #elif GEOMETRY_J == 'Water4' */
476 /* #if 0 in PARTICLES_J */
477 gmx_mm256_load_4rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
478 x+j_coord_offsetC,x+j_coord_offsetD,
479 x+j_coord_offsetE,x+j_coord_offsetF,
480 x+j_coord_offsetG,x+j_coord_offsetH,
481 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
482 &jy2,&jz2,&jx3,&jy3,&jz3);
484 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA+DIM,x+j_coord_offsetB+DIM,
485 x+j_coord_offsetC+DIM,x+j_coord_offsetD+DIM,
486 x+j_coord_offsetE+DIM,x+j_coord_offsetF+DIM,
487 x+j_coord_offsetG+DIM,x+j_coord_offsetH+DIM,
488 &jx1,&jy1,&jz1,&jx2,&jy2,&jz2,&jx3,&jy3,&jz3);
492 /* Calculate displacement vector */
493 /* #for I,J in PAIRS_IJ */
494 dx{I}{J} = _mm256_sub_ps(ix{I},jx{J});
495 dy{I}{J} = _mm256_sub_ps(iy{I},jy{J});
496 dz{I}{J} = _mm256_sub_ps(iz{I},jz{J});
497 /* #define INNERFLOPS INNERFLOPS+3 */
500 /* Calculate squared distance and things based on it */
501 /* #for I,J in PAIRS_IJ */
502 rsq{I}{J} = gmx_mm256_calc_rsq_ps(dx{I}{J},dy{I}{J},dz{I}{J});
503 /* #define INNERFLOPS INNERFLOPS+5 */
506 /* #for I,J in PAIRS_IJ */
507 /* #if 'rinv' in INTERACTION_FLAGS[I][J] */
508 rinv{I}{J} = avx256_invsqrt_f(rsq{I}{J});
509 /* #define INNERFLOPS INNERFLOPS+5 */
513 /* #for I,J in PAIRS_IJ */
514 /* #if 'rinvsq' in INTERACTION_FLAGS[I][J] */
515 /* # if 'rinv' not in INTERACTION_FLAGS[I][J] */
516 rinvsq{I}{J} = avx256_inv_f(rsq{I}{J});
517 /* #define INNERFLOPS INNERFLOPS+4 */
519 rinvsq{I}{J} = _mm256_mul_ps(rinv{I}{J},rinv{I}{J});
520 /* #define INNERFLOPS INNERFLOPS+1 */
525 /* #if not 'Water' in GEOMETRY_J */
526 /* Load parameters for j particles */
527 /* #for J in PARTICLES_ELEC_J */
528 jq{J} = gmx_mm256_load_8real_swizzle_ps(charge+jnrA+{J},charge+jnrB+{J},
529 charge+jnrC+{J},charge+jnrD+{J},
530 charge+jnrE+{J},charge+jnrF+{J},
531 charge+jnrG+{J},charge+jnrH+{J});
533 /* #for J in PARTICLES_VDW_J */
534 vdwjidx{J}A = 2*vdwtype[jnrA+{J}];
535 vdwjidx{J}B = 2*vdwtype[jnrB+{J}];
536 vdwjidx{J}C = 2*vdwtype[jnrC+{J}];
537 vdwjidx{J}D = 2*vdwtype[jnrD+{J}];
538 vdwjidx{J}E = 2*vdwtype[jnrE+{J}];
539 vdwjidx{J}F = 2*vdwtype[jnrF+{J}];
540 vdwjidx{J}G = 2*vdwtype[jnrG+{J}];
541 vdwjidx{J}H = 2*vdwtype[jnrH+{J}];
545 /* #if 'Force' in KERNEL_VF and not 'Particle' in GEOMETRY_I */
546 /* #for J in PARTICLES_J */
547 fjx{J} = _mm256_setzero_ps();
548 fjy{J} = _mm256_setzero_ps();
549 fjz{J} = _mm256_setzero_ps();
553 /* #for I,J in PAIRS_IJ */
555 /**************************
556 * CALCULATE INTERACTIONS *
557 **************************/
559 /* ## Note special check for TIP4P-TIP4P. Since we are cutting of all hydrogen interactions we also cut the LJ-only O-O interaction */
560 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] or (GEOMETRY_I=='Water4' and GEOMETRY_J=='Water4' and 'exactcutoff' in INTERACTION_FLAGS[1][1]) */
561 /* ## We always calculate rinv/rinvsq above to enable pipelineing in compilers (performance tested on x86) */
562 if (gmx_mm256_any_lt(rsq{I}{J},rcutoff2))
564 /* #if 0 ## this and the next two lines is a hack to maintain auto-indentation in template file */
567 /* #define INNERFLOPS INNERFLOPS+1 */
570 /* #if 'r' in INTERACTION_FLAGS[I][J] */
571 r{I}{J} = _mm256_mul_ps(rsq{I}{J},rinv{I}{J});
572 /* #if ROUND == 'Epilogue' */
573 r{I}{J} = _mm256_andnot_ps(dummy_mask,r{I}{J});
574 /* #define INNERFLOPS INNERFLOPS+1 */
576 /* #define INNERFLOPS INNERFLOPS+1 */
579 /* ## For water geometries we already loaded parameters at the start of the kernel */
580 /* #if not 'Water' in GEOMETRY_J */
581 /* Compute parameters for interactions between i and j atoms */
582 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
583 qq{I}{J} = _mm256_mul_ps(iq{I},jq{J});
584 /* #define INNERFLOPS INNERFLOPS+1 */
586 /* #if 'vdw' in INTERACTION_FLAGS[I][J] */
587 gmx_mm256_load_8pair_swizzle_ps(vdwioffsetptr{I}+vdwjidx{J}A,
588 vdwioffsetptr{I}+vdwjidx{J}B,
589 vdwioffsetptr{I}+vdwjidx{J}C,
590 vdwioffsetptr{I}+vdwjidx{J}D,
591 vdwioffsetptr{I}+vdwjidx{J}E,
592 vdwioffsetptr{I}+vdwjidx{J}F,
593 vdwioffsetptr{I}+vdwjidx{J}G,
594 vdwioffsetptr{I}+vdwjidx{J}H,
595 &c6_{I}{J},&c12_{I}{J});
597 /* #if 'LJEwald' in KERNEL_VDW */
598 c6grid_{I}{J} = gmx_mm256_load_8real_swizzle_ps(vdwgridioffsetptr{I}+vdwjidx{J}A,
599 vdwgridioffsetptr{I}+vdwjidx{J}B,
600 vdwgridioffsetptr{I}+vdwjidx{J}C,
601 vdwgridioffsetptr{I}+vdwjidx{J}D,
602 vdwgridioffsetptr{I}+vdwjidx{J}E,
603 vdwgridioffsetptr{I}+vdwjidx{J}F,
604 vdwgridioffsetptr{I}+vdwjidx{J}G,
605 vdwgridioffsetptr{I}+vdwjidx{J}H);
610 /* #if 'table' in INTERACTION_FLAGS[I][J] */
611 /* Calculate table index by multiplying r with table scale and truncate to integer */
612 rt = _mm256_mul_ps(r{I}{J},vftabscale);
613 vfitab = _mm256_cvttps_epi32(rt);
614 vfeps = _mm256_sub_ps(rt,_mm256_round_ps(rt, _MM_FROUND_FLOOR));
615 /* #define INNERFLOPS INNERFLOPS+4 */
616 /* AVX1 does not support 256-bit integer operations, so now we go to 128-bit mode... */
617 vfitab_lo = _mm256_extractf128_si256(vfitab,0x0);
618 vfitab_hi = _mm256_extractf128_si256(vfitab,0x1);
619 /* #if 'Table' in KERNEL_ELEC and 'Table' in KERNEL_VDW */
620 /* ## 3 tables, 4 bytes per point: multiply index by 12 */
621 vfitab_lo = _mm_slli_epi32(_mm_add_epi32(vfitab_lo,_mm_slli_epi32(vfitab_lo,1)),2);
622 vfitab_hi = _mm_slli_epi32(_mm_add_epi32(vfitab_hi,_mm_slli_epi32(vfitab_hi,1)),2);
623 /* #elif 'Table' in KERNEL_ELEC */
624 /* ## 1 table, 4 bytes per point: multiply index by 4 */
625 vfitab_lo = _mm_slli_epi32(vfitab_lo,2);
626 vfitab_hi = _mm_slli_epi32(vfitab_hi,2);
627 /* #elif 'Table' in KERNEL_VDW */
628 /* ## 2 tables, 4 bytes per point: multiply index by 8 */
629 vfitab_lo = _mm_slli_epi32(vfitab_lo,3);
630 vfitab_hi = _mm_slli_epi32(vfitab_hi,3);
634 /* ## ELECTROSTATIC INTERACTIONS */
635 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
637 /* #if KERNEL_ELEC=='Coulomb' */
639 /* COULOMB ELECTROSTATICS */
640 velec = _mm256_mul_ps(qq{I}{J},rinv{I}{J});
641 /* #define INNERFLOPS INNERFLOPS+1 */
642 /* #if 'Force' in KERNEL_VF */
643 felec = _mm256_mul_ps(velec,rinvsq{I}{J});
644 /* #define INNERFLOPS INNERFLOPS+1 */
647 /* #elif KERNEL_ELEC=='ReactionField' */
649 /* REACTION-FIELD ELECTROSTATICS */
650 /* #if 'Potential' in KERNEL_VF */
651 velec = _mm256_mul_ps(qq{I}{J},_mm256_sub_ps(_mm256_add_ps(rinv{I}{J},_mm256_mul_ps(krf,rsq{I}{J})),crf));
652 /* #define INNERFLOPS INNERFLOPS+4 */
654 /* #if 'Force' in KERNEL_VF */
655 felec = _mm256_mul_ps(qq{I}{J},_mm256_sub_ps(_mm256_mul_ps(rinv{I}{J},rinvsq{I}{J}),krf2));
656 /* #define INNERFLOPS INNERFLOPS+3 */
659 /* #elif KERNEL_ELEC=='Ewald' */
660 /* EWALD ELECTROSTATICS */
662 /* Analytical PME correction */
663 zeta2 = _mm256_mul_ps(beta2,rsq{I}{J});
664 /* #if 'Force' in KERNEL_VF */
665 rinv3 = _mm256_mul_ps(rinvsq{I}{J},rinv{I}{J});
666 pmecorrF = avx256_pmecorrF_f(zeta2);
667 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
668 felec = _mm256_mul_ps(qq{I}{J},felec);
669 /* #define INNERFLOPS INNERFLOPS+31 */
671 /* #if 'Potential' in KERNEL_VF or KERNEL_MOD_ELEC=='PotentialSwitch' */
672 pmecorrV = avx256_pmecorrV_f(zeta2);
673 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
674 /* #define INNERFLOPS INNERFLOPS+27 */
675 /* #if KERNEL_MOD_ELEC=='PotentialShift' */
676 velec = _mm256_sub_ps(_mm256_sub_ps(rinv{I}{J},sh_ewald),pmecorrV);
677 /* #define INNERFLOPS INNERFLOPS+21 */
679 velec = _mm256_sub_ps(rinv{I}{J},pmecorrV);
681 velec = _mm256_mul_ps(qq{I}{J},velec);
684 /* #elif KERNEL_ELEC=='CubicSplineTable' */
686 /* CUBIC SPLINE TABLE ELECTROSTATICS */
687 Y = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
688 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
689 F = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
690 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
691 G = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
692 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
693 H = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
694 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
695 GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
696 Heps = _mm256_mul_ps(vfeps,H);
697 Fp = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
698 /* #define INNERFLOPS INNERFLOPS+4 */
699 /* #if 'Potential' in KERNEL_VF */
700 VV = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
701 velec = _mm256_mul_ps(qq{I}{J},VV);
702 /* #define INNERFLOPS INNERFLOPS+3 */
704 /* #if 'Force' in KERNEL_VF */
705 FF = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
706 felec = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_mul_ps(qq{I}{J},FF),_mm256_mul_ps(vftabscale,rinv{I}{J})));
707 /* #define INNERFLOPS INNERFLOPS+7 */
710 /* ## End of check for electrostatics interaction forms */
712 /* ## END OF ELECTROSTATIC INTERACTION CHECK FOR PAIR I-J */
714 /* #if 'vdw' in INTERACTION_FLAGS[I][J] */
716 /* #if KERNEL_VDW=='LennardJones' */
718 /* LENNARD-JONES DISPERSION/REPULSION */
720 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq{I}{J},rinvsq{I}{J}),rinvsq{I}{J});
721 /* #define INNERFLOPS INNERFLOPS+2 */
722 /* #if 'Potential' in KERNEL_VF or KERNEL_MOD_VDW=='PotentialSwitch' */
723 vvdw6 = _mm256_mul_ps(c6_{I}{J},rinvsix);
724 vvdw12 = _mm256_mul_ps(c12_{I}{J},_mm256_mul_ps(rinvsix,rinvsix));
725 /* #define INNERFLOPS INNERFLOPS+3 */
726 /* #if KERNEL_MOD_VDW=='PotentialShift' */
727 vvdw = _mm256_sub_ps(_mm256_mul_ps( _mm256_sub_ps(vvdw12 , _mm256_mul_ps(c12_{I}{J},_mm256_mul_ps(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
728 _mm256_mul_ps( _mm256_sub_ps(vvdw6,_mm256_mul_ps(c6_{I}{J},sh_vdw_invrcut6)),one_sixth));
729 /* #define INNERFLOPS INNERFLOPS+8 */
731 vvdw = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
732 /* #define INNERFLOPS INNERFLOPS+3 */
734 /* ## Check for force inside potential check, i.e. this means we already did the potential part */
735 /* #if 'Force' in KERNEL_VF */
736 fvdw = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq{I}{J});
737 /* #define INNERFLOPS INNERFLOPS+2 */
739 /* #elif KERNEL_VF=='Force' */
740 /* ## Force-only LennardJones makes it possible to save 1 flop (they do add up...) */
741 fvdw = _mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_{I}{J},rinvsix),c6_{I}{J}),_mm256_mul_ps(rinvsix,rinvsq{I}{J}));
742 /* #define INNERFLOPS INNERFLOPS+4 */
745 /* #elif KERNEL_VDW=='CubicSplineTable' */
747 /* CUBIC SPLINE TABLE DISPERSION */
748 /* #if 'Table' in KERNEL_ELEC */
749 vfitab_lo = _mm_add_epi32(vfitab_lo,ifour);
750 vfitab_hi = _mm_add_epi32(vfitab_hi,ifour);
752 Y = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
753 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
754 F = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
755 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
756 G = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
757 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
758 H = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
759 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
760 GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
761 Heps = _mm256_mul_ps(vfeps,H);
762 Fp = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
763 /* #define INNERFLOPS INNERFLOPS+4 */
764 /* #if 'Potential' in KERNEL_VF */
765 VV = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
766 vvdw6 = _mm256_mul_ps(c6_{I}{J},VV);
767 /* #define INNERFLOPS INNERFLOPS+3 */
769 /* #if 'Force' in KERNEL_VF */
770 FF = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
771 fvdw6 = _mm256_mul_ps(c6_{I}{J},FF);
772 /* #define INNERFLOPS INNERFLOPS+4 */
775 /* CUBIC SPLINE TABLE REPULSION */
776 vfitab_lo = _mm_add_epi32(vfitab_lo,ifour);
777 vfitab_hi = _mm_add_epi32(vfitab_hi,ifour);
778 Y = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
779 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
780 F = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
781 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
782 G = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
783 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
784 H = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
785 _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
786 GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
787 Heps = _mm256_mul_ps(vfeps,H);
788 Fp = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
789 /* #define INNERFLOPS INNERFLOPS+4 */
790 /* #if 'Potential' in KERNEL_VF */
791 VV = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
792 vvdw12 = _mm256_mul_ps(c12_{I}{J},VV);
793 /* #define INNERFLOPS INNERFLOPS+3 */
795 /* #if 'Force' in KERNEL_VF */
796 FF = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
797 fvdw12 = _mm256_mul_ps(c12_{I}{J},FF);
798 /* #define INNERFLOPS INNERFLOPS+5 */
800 /* #if 'Potential' in KERNEL_VF */
801 vvdw = _mm256_add_ps(vvdw12,vvdw6);
802 /* #define INNERFLOPS INNERFLOPS+1 */
804 /* #if 'Force' in KERNEL_VF */
805 fvdw = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_add_ps(fvdw6,fvdw12),_mm256_mul_ps(vftabscale,rinv{I}{J})));
806 /* #define INNERFLOPS INNERFLOPS+4 */
809 /* #elif KERNEL_VDW=='LJEwald' */
811 /* Analytical LJ-PME */
812 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq{I}{J},rinvsq{I}{J}),rinvsq{I}{J});
813 ewcljrsq = _mm256_mul_ps(ewclj2,rsq{I}{J});
814 ewclj6 = _mm256_mul_ps(ewclj2,_mm256_mul_ps(ewclj2,ewclj2));
815 exponent = avx256_exp_f(ewcljrsq);
816 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
817 poly = _mm256_mul_ps(exponent,_mm256_add_ps(_mm256_sub_ps(one,ewcljrsq),_mm256_mul_ps(_mm256_mul_ps(ewcljrsq,ewcljrsq),one_half)));
818 /* #define INNERFLOPS INNERFLOPS+11 */
819 /* #if 'Potential' in KERNEL_VF or KERNEL_MOD_VDW=='PotentialSwitch' */
820 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
821 vvdw6 = _mm256_mul_ps(_mm256_sub_ps(c6_{I}{J},_mm256_mul_ps(c6grid_{I}{J},_mm256_sub_ps(one,poly))),rinvsix);
822 vvdw12 = _mm256_mul_ps(c12_{I}{J},_mm256_mul_ps(rinvsix,rinvsix));
823 /* #define INNERFLOPS INNERFLOPS+6 */
824 /* #if KERNEL_MOD_VDW=='PotentialShift' */
825 vvdw = _mm256_sub_ps(_mm256_mul_ps( _mm256_sub_ps(vvdw12 , _mm256_mul_ps(c12_{I}{J},_mm256_mul_ps(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
826 _mm256_mul_ps( _mm256_sub_ps(vvdw6,_mm256_add_ps(_mm256_mul_ps(c6_{I}{J},sh_vdw_invrcut6),_mm256_mul_ps(c6grid_{I}{J},sh_lj_ewald))),one_sixth));
827 /* #define INNERFLOPS INNERFLOPS+10 */
829 vvdw = _mm256_sub_ps(_mm256_mul_ps(vvdw12,one_twelfth),_mm256_mul_ps(vvdw6,one_sixth));
830 /* #define INNERFLOPS INNERFLOPS+3 */
832 /* ## Check for force inside potential check, i.e. this means we already did the potential part */
833 /* #if 'Force' in KERNEL_VF */
834 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
835 fvdw = _mm256_mul_ps(_mm256_sub_ps(vvdw12,_mm256_sub_ps(vvdw6,_mm256_mul_ps(_mm256_mul_ps(c6grid_{I}{J},one_sixth),_mm256_mul_ps(exponent,ewclj6)))),rinvsq{I}{J});
836 /* #define INNERFLOPS INNERFLOPS+6 */
838 /* #elif KERNEL_VF=='Force' */
839 /* f6A = 6 * C6grid * (1 - poly) */
840 f6A = _mm256_mul_ps(c6grid_{I}{J},_mm256_sub_ps(one,poly));
841 /* f6B = C6grid * exponent * beta^6 */
842 f6B = _mm256_mul_ps(_mm256_mul_ps(c6grid_{I}{J},one_sixth),_mm256_mul_ps(exponent,ewclj6));
843 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
844 fvdw = _mm256_mul_ps(_mm256_add_ps(_mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_{I}{J},rinvsix),_mm256_sub_ps(c6_{I}{J},f6A)),rinvsix),f6B),rinvsq{I}{J});
845 /* #define INNERFLOPS INNERFLOPS+11 */
848 /* ## End of check for vdw interaction forms */
850 /* ## END OF VDW INTERACTION CHECK FOR PAIR I-J */
852 /* #if 'switch' in INTERACTION_FLAGS[I][J] */
853 d = _mm256_sub_ps(r{I}{J},rswitch);
854 d = _mm256_max_ps(d,_mm256_setzero_ps());
855 d2 = _mm256_mul_ps(d,d);
856 sw = _mm256_add_ps(one,_mm256_mul_ps(d2,_mm256_mul_ps(d,_mm256_add_ps(swV3,_mm256_mul_ps(d,_mm256_add_ps(swV4,_mm256_mul_ps(d,swV5)))))));
857 /* #define INNERFLOPS INNERFLOPS+10 */
859 /* #if 'Force' in KERNEL_VF */
860 dsw = _mm256_mul_ps(d2,_mm256_add_ps(swF2,_mm256_mul_ps(d,_mm256_add_ps(swF3,_mm256_mul_ps(d,swF4)))));
861 /* #define INNERFLOPS INNERFLOPS+5 */
864 /* Evaluate switch function */
865 /* #if 'Force' in KERNEL_VF */
866 /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
867 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_ELEC=='PotentialSwitch' */
868 felec = _mm256_sub_ps( _mm256_mul_ps(felec,sw) , _mm256_mul_ps(rinv{I}{J},_mm256_mul_ps(velec,dsw)) );
869 /* #define INNERFLOPS INNERFLOPS+4 */
871 /* #if 'vdw' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_VDW=='PotentialSwitch' */
872 fvdw = _mm256_sub_ps( _mm256_mul_ps(fvdw,sw) , _mm256_mul_ps(rinv{I}{J},_mm256_mul_ps(vvdw,dsw)) );
873 /* #define INNERFLOPS INNERFLOPS+4 */
876 /* #if 'Potential' in KERNEL_VF */
877 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_ELEC=='PotentialSwitch' */
878 velec = _mm256_mul_ps(velec,sw);
879 /* #define INNERFLOPS INNERFLOPS+1 */
881 /* #if 'vdw' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_VDW=='PotentialSwitch' */
882 vvdw = _mm256_mul_ps(vvdw,sw);
883 /* #define INNERFLOPS INNERFLOPS+1 */
887 /* ## Note special check for TIP4P-TIP4P. Since we are cutting of all hydrogen interactions we also cut the LJ-only O-O interaction */
888 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] or (GEOMETRY_I=='Water4' and GEOMETRY_J=='Water4' and 'exactcutoff' in INTERACTION_FLAGS[1][1]) */
889 cutoff_mask = _mm256_cmp_ps(rsq{I}{J},rcutoff2,_CMP_LT_OQ);
890 /* #define INNERFLOPS INNERFLOPS+1 */
893 /* #if 'Potential' in KERNEL_VF */
894 /* Update potential sum for this i atom from the interaction with this j atom. */
895 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
896 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
897 velec = _mm256_and_ps(velec,cutoff_mask);
898 /* #define INNERFLOPS INNERFLOPS+1 */
900 /* #if ROUND == 'Epilogue' */
901 velec = _mm256_andnot_ps(dummy_mask,velec);
903 velecsum = _mm256_add_ps(velecsum,velec);
904 /* #define INNERFLOPS INNERFLOPS+1 */
906 /* #if 'vdw' in INTERACTION_FLAGS[I][J] */
907 /* ## Note special check for TIP4P-TIP4P. Since we are cutting of all hydrogen interactions we also cut the LJ-only O-O interaction */
908 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] or (GEOMETRY_I=='Water4' and GEOMETRY_J=='Water4' and 'exactcutoff' in INTERACTION_FLAGS[1][1]) */
909 vvdw = _mm256_and_ps(vvdw,cutoff_mask);
910 /* #define INNERFLOPS INNERFLOPS+1 */
912 /* #if ROUND == 'Epilogue' */
913 vvdw = _mm256_andnot_ps(dummy_mask,vvdw);
915 vvdwsum = _mm256_add_ps(vvdwsum,vvdw);
916 /* #define INNERFLOPS INNERFLOPS+1 */
920 /* #if 'Force' in KERNEL_VF */
922 /* #if 'electrostatics' in INTERACTION_FLAGS[I][J] and 'vdw' in INTERACTION_FLAGS[I][J] */
923 fscal = _mm256_add_ps(felec,fvdw);
924 /* #define INNERFLOPS INNERFLOPS+1 */
925 /* #elif 'electrostatics' in INTERACTION_FLAGS[I][J] */
927 /* #elif 'vdw' in INTERACTION_FLAGS[I][J] */
931 /* ## Note special check for TIP4P-TIP4P. Since we are cutting of all hydrogen interactions we also cut the LJ-only O-O interaction */
932 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] or (GEOMETRY_I=='Water4' and GEOMETRY_J=='Water4' and 'exactcutoff' in INTERACTION_FLAGS[1][1]) */
933 fscal = _mm256_and_ps(fscal,cutoff_mask);
934 /* #define INNERFLOPS INNERFLOPS+1 */
937 /* #if ROUND == 'Epilogue' */
938 fscal = _mm256_andnot_ps(dummy_mask,fscal);
941 /* Calculate temporary vectorial force */
942 tx = _mm256_mul_ps(fscal,dx{I}{J});
943 ty = _mm256_mul_ps(fscal,dy{I}{J});
944 tz = _mm256_mul_ps(fscal,dz{I}{J});
946 /* Update vectorial force */
947 fix{I} = _mm256_add_ps(fix{I},tx);
948 fiy{I} = _mm256_add_ps(fiy{I},ty);
949 fiz{I} = _mm256_add_ps(fiz{I},tz);
950 /* #define INNERFLOPS INNERFLOPS+6 */
952 /* #if GEOMETRY_I == 'Particle' */
953 /* #if ROUND == 'Loop' */
954 fjptrA = f+j_coord_offsetA;
955 fjptrB = f+j_coord_offsetB;
956 fjptrC = f+j_coord_offsetC;
957 fjptrD = f+j_coord_offsetD;
958 fjptrE = f+j_coord_offsetE;
959 fjptrF = f+j_coord_offsetF;
960 fjptrG = f+j_coord_offsetG;
961 fjptrH = f+j_coord_offsetH;
963 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
964 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
965 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
966 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
967 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
968 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
969 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
970 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
972 gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,tx,ty,tz);
973 /* #define INNERFLOPS INNERFLOPS+3 */
975 fjx{J} = _mm256_add_ps(fjx{J},tx);
976 fjy{J} = _mm256_add_ps(fjy{J},ty);
977 fjz{J} = _mm256_add_ps(fjz{J},tz);
978 /* #define INNERFLOPS INNERFLOPS+3 */
983 /* ## Note special check for TIP4P-TIP4P. Since we are cutting of all hydrogen interactions we also cut the LJ-only O-O interaction */
984 /* #if 'exactcutoff' in INTERACTION_FLAGS[I][J] or (GEOMETRY_I=='Water4' and GEOMETRY_J=='Water4' and 'exactcutoff' in INTERACTION_FLAGS[1][1]) */
985 /* #if 0 ## This and next two lines is a hack to maintain indentation in template file */
990 /* ## End of check for the interaction being outside the cutoff */
993 /* ## End of loop over i-j interaction pairs */
995 /* #if GEOMETRY_I != 'Particle' */
996 /* #if ROUND == 'Loop' */
997 fjptrA = f+j_coord_offsetA;
998 fjptrB = f+j_coord_offsetB;
999 fjptrC = f+j_coord_offsetC;
1000 fjptrD = f+j_coord_offsetD;
1001 fjptrE = f+j_coord_offsetE;
1002 fjptrF = f+j_coord_offsetF;
1003 fjptrG = f+j_coord_offsetG;
1004 fjptrH = f+j_coord_offsetH;
1006 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1007 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1008 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1009 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1010 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1011 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1012 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1013 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1017 /* #if 'Water' in GEOMETRY_I and GEOMETRY_J == 'Particle' */
1018 gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,fjx0,fjy0,fjz0);
1019 /* #define INNERFLOPS INNERFLOPS+3 */
1020 /* #elif GEOMETRY_J == 'Water3' */
1021 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1022 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1023 /* #define INNERFLOPS INNERFLOPS+9 */
1024 /* #elif GEOMETRY_J == 'Water4' */
1025 /* #if 0 in PARTICLES_J */
1026 gmx_mm256_decrement_4rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1027 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
1028 fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1029 /* #define INNERFLOPS INNERFLOPS+12 */
1031 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA+DIM,fjptrB+DIM,fjptrC+DIM,fjptrD+DIM,
1032 fjptrE+DIM,fjptrF+DIM,fjptrG+DIM,fjptrH+DIM,
1033 fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1034 /* #define INNERFLOPS INNERFLOPS+9 */
1038 /* Inner loop uses {INNERFLOPS} flops */
1043 /* End of innermost loop */
1045 /* #if 'Force' in KERNEL_VF */
1046 /* #if GEOMETRY_I == 'Particle' */
1047 gmx_mm256_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
1048 f+i_coord_offset,fshift+i_shift_offset);
1049 /* #define OUTERFLOPS OUTERFLOPS+6 */
1050 /* #elif GEOMETRY_I == 'Water3' */
1051 gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1052 f+i_coord_offset,fshift+i_shift_offset);
1053 /* #define OUTERFLOPS OUTERFLOPS+18 */
1054 /* #elif GEOMETRY_I == 'Water4' */
1055 /* #if 0 in PARTICLES_I */
1056 gmx_mm256_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1057 f+i_coord_offset,fshift+i_shift_offset);
1058 /* #define OUTERFLOPS OUTERFLOPS+24 */
1060 gmx_mm256_update_iforce_3atom_swizzle_ps(fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1061 f+i_coord_offset+DIM,fshift+i_shift_offset);
1062 /* #define OUTERFLOPS OUTERFLOPS+18 */
1067 /* #if 'Potential' in KERNEL_VF */
1069 /* Update potential energies */
1070 /* #if KERNEL_ELEC != 'None' */
1071 gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1072 /* #define OUTERFLOPS OUTERFLOPS+1 */
1074 /* #if KERNEL_VDW != 'None' */
1075 gmx_mm256_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1076 /* #define OUTERFLOPS OUTERFLOPS+1 */
1080 /* Increment number of inner iterations */
1081 inneriter += j_index_end - j_index_start;
1083 /* Outer loop uses {OUTERFLOPS} flops */
1086 /* Increment number of outer iterations */
1089 /* Update outer/inner flops */
1090 /* ## NB: This is not important, it just affects the flopcount. However, since our preprocessor is */
1091 /* ## primitive and replaces aggressively even in strings inside these directives, we need to */
1092 /* ## assemble the main part of the name (containing KERNEL/ELEC/VDW) directly in the source. */
1093 /* #if GEOMETRY_I == 'Water3' */
1094 /* #define ISUFFIX '_W3' */
1095 /* #elif GEOMETRY_I == 'Water4' */
1096 /* #define ISUFFIX '_W4' */
1098 /* #define ISUFFIX '' */
1100 /* #if GEOMETRY_J == 'Water3' */
1101 /* #define JSUFFIX 'W3' */
1102 /* #elif GEOMETRY_J == 'Water4' */
1103 /* #define JSUFFIX 'W4' */
1105 /* #define JSUFFIX '' */
1107 /* #if 'PotentialAndForce' in KERNEL_VF */
1108 /* #define VFSUFFIX '_VF' */
1109 /* #elif 'Potential' in KERNEL_VF */
1110 /* #define VFSUFFIX '_V' */
1112 /* #define VFSUFFIX '_F' */
1115 /* #if KERNEL_ELEC != 'None' and KERNEL_VDW != 'None' */
1116 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});
1117 /* #elif KERNEL_ELEC != 'None' */
1118 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});
1120 inc_nrnb(nrnb,eNR_NBKERNEL_VDW{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});