c55319e65c51c47b6aba4103eabbec6c8c55cbb7
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_avx_256_single / nb_kernel_ElecRF_VdwNone_GeomW3W3_avx_256_single.c
1 /*
2  * This file is part of the GROMACS molecular simulation package.
3  *
4  * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6  * and including many others, as listed in the AUTHORS file in the
7  * top-level source directory and at http://www.gromacs.org.
8  *
9  * GROMACS is free software; you can redistribute it and/or
10  * modify it under the terms of the GNU Lesser General Public License
11  * as published by the Free Software Foundation; either version 2.1
12  * of the License, or (at your option) any later version.
13  *
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35 /*
36  * Note: this file was generated by the GROMACS avx_256_single kernel generator.
37  */
38 #include "config.h"
39
40 #include <math.h>
41
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
46
47 #include "gromacs/simd/math_x86_avx_256_single.h"
48 #include "kernelutil_x86_avx_256_single.h"
49
50 /*
51  * Gromacs nonbonded kernel:   nb_kernel_ElecRF_VdwNone_GeomW3W3_VF_avx_256_single
52  * Electrostatics interaction: ReactionField
53  * VdW interaction:            None
54  * Geometry:                   Water3-Water3
55  * Calculate force/pot:        PotentialAndForce
56  */
57 void
58 nb_kernel_ElecRF_VdwNone_GeomW3W3_VF_avx_256_single
59                     (t_nblist                    * gmx_restrict       nlist,
60                      rvec                        * gmx_restrict          xx,
61                      rvec                        * gmx_restrict          ff,
62                      t_forcerec                  * gmx_restrict          fr,
63                      t_mdatoms                   * gmx_restrict     mdatoms,
64                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65                      t_nrnb                      * gmx_restrict        nrnb)
66 {
67     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
68      * just 0 for non-waters.
69      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
70      * jnr indices corresponding to data put in the four positions in the SIMD register.
71      */
72     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
73     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74     int              jnrA,jnrB,jnrC,jnrD;
75     int              jnrE,jnrF,jnrG,jnrH;
76     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
77     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
78     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
79     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
80     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
81     real             rcutoff_scalar;
82     real             *shiftvec,*fshift,*x,*f;
83     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
84     real             scratch[4*DIM];
85     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86     real *           vdwioffsetptr0;
87     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
88     real *           vdwioffsetptr1;
89     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
90     real *           vdwioffsetptr2;
91     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
92     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
93     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
94     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
95     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
96     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
97     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
98     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
99     __m256           dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
100     __m256           dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
101     __m256           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
102     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
103     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
104     __m256           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
105     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
106     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
107     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
108     real             *charge;
109     __m256           dummy_mask,cutoff_mask;
110     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
111     __m256           one     = _mm256_set1_ps(1.0);
112     __m256           two     = _mm256_set1_ps(2.0);
113     x                = xx[0];
114     f                = ff[0];
115
116     nri              = nlist->nri;
117     iinr             = nlist->iinr;
118     jindex           = nlist->jindex;
119     jjnr             = nlist->jjnr;
120     shiftidx         = nlist->shift;
121     gid              = nlist->gid;
122     shiftvec         = fr->shift_vec[0];
123     fshift           = fr->fshift[0];
124     facel            = _mm256_set1_ps(fr->epsfac);
125     charge           = mdatoms->chargeA;
126     krf              = _mm256_set1_ps(fr->ic->k_rf);
127     krf2             = _mm256_set1_ps(fr->ic->k_rf*2.0);
128     crf              = _mm256_set1_ps(fr->ic->c_rf);
129
130     /* Setup water-specific parameters */
131     inr              = nlist->iinr[0];
132     iq0              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
133     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
134     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
135
136     jq0              = _mm256_set1_ps(charge[inr+0]);
137     jq1              = _mm256_set1_ps(charge[inr+1]);
138     jq2              = _mm256_set1_ps(charge[inr+2]);
139     qq00             = _mm256_mul_ps(iq0,jq0);
140     qq01             = _mm256_mul_ps(iq0,jq1);
141     qq02             = _mm256_mul_ps(iq0,jq2);
142     qq10             = _mm256_mul_ps(iq1,jq0);
143     qq11             = _mm256_mul_ps(iq1,jq1);
144     qq12             = _mm256_mul_ps(iq1,jq2);
145     qq20             = _mm256_mul_ps(iq2,jq0);
146     qq21             = _mm256_mul_ps(iq2,jq1);
147     qq22             = _mm256_mul_ps(iq2,jq2);
148
149     /* Avoid stupid compiler warnings */
150     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
151     j_coord_offsetA = 0;
152     j_coord_offsetB = 0;
153     j_coord_offsetC = 0;
154     j_coord_offsetD = 0;
155     j_coord_offsetE = 0;
156     j_coord_offsetF = 0;
157     j_coord_offsetG = 0;
158     j_coord_offsetH = 0;
159
160     outeriter        = 0;
161     inneriter        = 0;
162
163     for(iidx=0;iidx<4*DIM;iidx++)
164     {
165         scratch[iidx] = 0.0;
166     }
167
168     /* Start outer loop over neighborlists */
169     for(iidx=0; iidx<nri; iidx++)
170     {
171         /* Load shift vector for this list */
172         i_shift_offset   = DIM*shiftidx[iidx];
173
174         /* Load limits for loop over neighbors */
175         j_index_start    = jindex[iidx];
176         j_index_end      = jindex[iidx+1];
177
178         /* Get outer coordinate index */
179         inr              = iinr[iidx];
180         i_coord_offset   = DIM*inr;
181
182         /* Load i particle coords and add shift vector */
183         gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
184                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
185
186         fix0             = _mm256_setzero_ps();
187         fiy0             = _mm256_setzero_ps();
188         fiz0             = _mm256_setzero_ps();
189         fix1             = _mm256_setzero_ps();
190         fiy1             = _mm256_setzero_ps();
191         fiz1             = _mm256_setzero_ps();
192         fix2             = _mm256_setzero_ps();
193         fiy2             = _mm256_setzero_ps();
194         fiz2             = _mm256_setzero_ps();
195
196         /* Reset potential sums */
197         velecsum         = _mm256_setzero_ps();
198
199         /* Start inner kernel loop */
200         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
201         {
202
203             /* Get j neighbor index, and coordinate index */
204             jnrA             = jjnr[jidx];
205             jnrB             = jjnr[jidx+1];
206             jnrC             = jjnr[jidx+2];
207             jnrD             = jjnr[jidx+3];
208             jnrE             = jjnr[jidx+4];
209             jnrF             = jjnr[jidx+5];
210             jnrG             = jjnr[jidx+6];
211             jnrH             = jjnr[jidx+7];
212             j_coord_offsetA  = DIM*jnrA;
213             j_coord_offsetB  = DIM*jnrB;
214             j_coord_offsetC  = DIM*jnrC;
215             j_coord_offsetD  = DIM*jnrD;
216             j_coord_offsetE  = DIM*jnrE;
217             j_coord_offsetF  = DIM*jnrF;
218             j_coord_offsetG  = DIM*jnrG;
219             j_coord_offsetH  = DIM*jnrH;
220
221             /* load j atom coordinates */
222             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
223                                                  x+j_coord_offsetC,x+j_coord_offsetD,
224                                                  x+j_coord_offsetE,x+j_coord_offsetF,
225                                                  x+j_coord_offsetG,x+j_coord_offsetH,
226                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
227
228             /* Calculate displacement vector */
229             dx00             = _mm256_sub_ps(ix0,jx0);
230             dy00             = _mm256_sub_ps(iy0,jy0);
231             dz00             = _mm256_sub_ps(iz0,jz0);
232             dx01             = _mm256_sub_ps(ix0,jx1);
233             dy01             = _mm256_sub_ps(iy0,jy1);
234             dz01             = _mm256_sub_ps(iz0,jz1);
235             dx02             = _mm256_sub_ps(ix0,jx2);
236             dy02             = _mm256_sub_ps(iy0,jy2);
237             dz02             = _mm256_sub_ps(iz0,jz2);
238             dx10             = _mm256_sub_ps(ix1,jx0);
239             dy10             = _mm256_sub_ps(iy1,jy0);
240             dz10             = _mm256_sub_ps(iz1,jz0);
241             dx11             = _mm256_sub_ps(ix1,jx1);
242             dy11             = _mm256_sub_ps(iy1,jy1);
243             dz11             = _mm256_sub_ps(iz1,jz1);
244             dx12             = _mm256_sub_ps(ix1,jx2);
245             dy12             = _mm256_sub_ps(iy1,jy2);
246             dz12             = _mm256_sub_ps(iz1,jz2);
247             dx20             = _mm256_sub_ps(ix2,jx0);
248             dy20             = _mm256_sub_ps(iy2,jy0);
249             dz20             = _mm256_sub_ps(iz2,jz0);
250             dx21             = _mm256_sub_ps(ix2,jx1);
251             dy21             = _mm256_sub_ps(iy2,jy1);
252             dz21             = _mm256_sub_ps(iz2,jz1);
253             dx22             = _mm256_sub_ps(ix2,jx2);
254             dy22             = _mm256_sub_ps(iy2,jy2);
255             dz22             = _mm256_sub_ps(iz2,jz2);
256
257             /* Calculate squared distance and things based on it */
258             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
259             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
260             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
261             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
262             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
263             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
264             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
265             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
266             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
267
268             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
269             rinv01           = gmx_mm256_invsqrt_ps(rsq01);
270             rinv02           = gmx_mm256_invsqrt_ps(rsq02);
271             rinv10           = gmx_mm256_invsqrt_ps(rsq10);
272             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
273             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
274             rinv20           = gmx_mm256_invsqrt_ps(rsq20);
275             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
276             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
277
278             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
279             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
280             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
281             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
282             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
283             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
284             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
285             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
286             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
287
288             fjx0             = _mm256_setzero_ps();
289             fjy0             = _mm256_setzero_ps();
290             fjz0             = _mm256_setzero_ps();
291             fjx1             = _mm256_setzero_ps();
292             fjy1             = _mm256_setzero_ps();
293             fjz1             = _mm256_setzero_ps();
294             fjx2             = _mm256_setzero_ps();
295             fjy2             = _mm256_setzero_ps();
296             fjz2             = _mm256_setzero_ps();
297
298             /**************************
299              * CALCULATE INTERACTIONS *
300              **************************/
301
302             /* REACTION-FIELD ELECTROSTATICS */
303             velec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_add_ps(rinv00,_mm256_mul_ps(krf,rsq00)),crf));
304             felec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_mul_ps(rinv00,rinvsq00),krf2));
305
306             /* Update potential sum for this i atom from the interaction with this j atom. */
307             velecsum         = _mm256_add_ps(velecsum,velec);
308
309             fscal            = felec;
310
311             /* Calculate temporary vectorial force */
312             tx               = _mm256_mul_ps(fscal,dx00);
313             ty               = _mm256_mul_ps(fscal,dy00);
314             tz               = _mm256_mul_ps(fscal,dz00);
315
316             /* Update vectorial force */
317             fix0             = _mm256_add_ps(fix0,tx);
318             fiy0             = _mm256_add_ps(fiy0,ty);
319             fiz0             = _mm256_add_ps(fiz0,tz);
320
321             fjx0             = _mm256_add_ps(fjx0,tx);
322             fjy0             = _mm256_add_ps(fjy0,ty);
323             fjz0             = _mm256_add_ps(fjz0,tz);
324
325             /**************************
326              * CALCULATE INTERACTIONS *
327              **************************/
328
329             /* REACTION-FIELD ELECTROSTATICS */
330             velec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_add_ps(rinv01,_mm256_mul_ps(krf,rsq01)),crf));
331             felec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_mul_ps(rinv01,rinvsq01),krf2));
332
333             /* Update potential sum for this i atom from the interaction with this j atom. */
334             velecsum         = _mm256_add_ps(velecsum,velec);
335
336             fscal            = felec;
337
338             /* Calculate temporary vectorial force */
339             tx               = _mm256_mul_ps(fscal,dx01);
340             ty               = _mm256_mul_ps(fscal,dy01);
341             tz               = _mm256_mul_ps(fscal,dz01);
342
343             /* Update vectorial force */
344             fix0             = _mm256_add_ps(fix0,tx);
345             fiy0             = _mm256_add_ps(fiy0,ty);
346             fiz0             = _mm256_add_ps(fiz0,tz);
347
348             fjx1             = _mm256_add_ps(fjx1,tx);
349             fjy1             = _mm256_add_ps(fjy1,ty);
350             fjz1             = _mm256_add_ps(fjz1,tz);
351
352             /**************************
353              * CALCULATE INTERACTIONS *
354              **************************/
355
356             /* REACTION-FIELD ELECTROSTATICS */
357             velec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_add_ps(rinv02,_mm256_mul_ps(krf,rsq02)),crf));
358             felec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_mul_ps(rinv02,rinvsq02),krf2));
359
360             /* Update potential sum for this i atom from the interaction with this j atom. */
361             velecsum         = _mm256_add_ps(velecsum,velec);
362
363             fscal            = felec;
364
365             /* Calculate temporary vectorial force */
366             tx               = _mm256_mul_ps(fscal,dx02);
367             ty               = _mm256_mul_ps(fscal,dy02);
368             tz               = _mm256_mul_ps(fscal,dz02);
369
370             /* Update vectorial force */
371             fix0             = _mm256_add_ps(fix0,tx);
372             fiy0             = _mm256_add_ps(fiy0,ty);
373             fiz0             = _mm256_add_ps(fiz0,tz);
374
375             fjx2             = _mm256_add_ps(fjx2,tx);
376             fjy2             = _mm256_add_ps(fjy2,ty);
377             fjz2             = _mm256_add_ps(fjz2,tz);
378
379             /**************************
380              * CALCULATE INTERACTIONS *
381              **************************/
382
383             /* REACTION-FIELD ELECTROSTATICS */
384             velec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_add_ps(rinv10,_mm256_mul_ps(krf,rsq10)),crf));
385             felec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_mul_ps(rinv10,rinvsq10),krf2));
386
387             /* Update potential sum for this i atom from the interaction with this j atom. */
388             velecsum         = _mm256_add_ps(velecsum,velec);
389
390             fscal            = felec;
391
392             /* Calculate temporary vectorial force */
393             tx               = _mm256_mul_ps(fscal,dx10);
394             ty               = _mm256_mul_ps(fscal,dy10);
395             tz               = _mm256_mul_ps(fscal,dz10);
396
397             /* Update vectorial force */
398             fix1             = _mm256_add_ps(fix1,tx);
399             fiy1             = _mm256_add_ps(fiy1,ty);
400             fiz1             = _mm256_add_ps(fiz1,tz);
401
402             fjx0             = _mm256_add_ps(fjx0,tx);
403             fjy0             = _mm256_add_ps(fjy0,ty);
404             fjz0             = _mm256_add_ps(fjz0,tz);
405
406             /**************************
407              * CALCULATE INTERACTIONS *
408              **************************/
409
410             /* REACTION-FIELD ELECTROSTATICS */
411             velec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_add_ps(rinv11,_mm256_mul_ps(krf,rsq11)),crf));
412             felec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_mul_ps(rinv11,rinvsq11),krf2));
413
414             /* Update potential sum for this i atom from the interaction with this j atom. */
415             velecsum         = _mm256_add_ps(velecsum,velec);
416
417             fscal            = felec;
418
419             /* Calculate temporary vectorial force */
420             tx               = _mm256_mul_ps(fscal,dx11);
421             ty               = _mm256_mul_ps(fscal,dy11);
422             tz               = _mm256_mul_ps(fscal,dz11);
423
424             /* Update vectorial force */
425             fix1             = _mm256_add_ps(fix1,tx);
426             fiy1             = _mm256_add_ps(fiy1,ty);
427             fiz1             = _mm256_add_ps(fiz1,tz);
428
429             fjx1             = _mm256_add_ps(fjx1,tx);
430             fjy1             = _mm256_add_ps(fjy1,ty);
431             fjz1             = _mm256_add_ps(fjz1,tz);
432
433             /**************************
434              * CALCULATE INTERACTIONS *
435              **************************/
436
437             /* REACTION-FIELD ELECTROSTATICS */
438             velec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_add_ps(rinv12,_mm256_mul_ps(krf,rsq12)),crf));
439             felec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_mul_ps(rinv12,rinvsq12),krf2));
440
441             /* Update potential sum for this i atom from the interaction with this j atom. */
442             velecsum         = _mm256_add_ps(velecsum,velec);
443
444             fscal            = felec;
445
446             /* Calculate temporary vectorial force */
447             tx               = _mm256_mul_ps(fscal,dx12);
448             ty               = _mm256_mul_ps(fscal,dy12);
449             tz               = _mm256_mul_ps(fscal,dz12);
450
451             /* Update vectorial force */
452             fix1             = _mm256_add_ps(fix1,tx);
453             fiy1             = _mm256_add_ps(fiy1,ty);
454             fiz1             = _mm256_add_ps(fiz1,tz);
455
456             fjx2             = _mm256_add_ps(fjx2,tx);
457             fjy2             = _mm256_add_ps(fjy2,ty);
458             fjz2             = _mm256_add_ps(fjz2,tz);
459
460             /**************************
461              * CALCULATE INTERACTIONS *
462              **************************/
463
464             /* REACTION-FIELD ELECTROSTATICS */
465             velec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_add_ps(rinv20,_mm256_mul_ps(krf,rsq20)),crf));
466             felec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_mul_ps(rinv20,rinvsq20),krf2));
467
468             /* Update potential sum for this i atom from the interaction with this j atom. */
469             velecsum         = _mm256_add_ps(velecsum,velec);
470
471             fscal            = felec;
472
473             /* Calculate temporary vectorial force */
474             tx               = _mm256_mul_ps(fscal,dx20);
475             ty               = _mm256_mul_ps(fscal,dy20);
476             tz               = _mm256_mul_ps(fscal,dz20);
477
478             /* Update vectorial force */
479             fix2             = _mm256_add_ps(fix2,tx);
480             fiy2             = _mm256_add_ps(fiy2,ty);
481             fiz2             = _mm256_add_ps(fiz2,tz);
482
483             fjx0             = _mm256_add_ps(fjx0,tx);
484             fjy0             = _mm256_add_ps(fjy0,ty);
485             fjz0             = _mm256_add_ps(fjz0,tz);
486
487             /**************************
488              * CALCULATE INTERACTIONS *
489              **************************/
490
491             /* REACTION-FIELD ELECTROSTATICS */
492             velec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_add_ps(rinv21,_mm256_mul_ps(krf,rsq21)),crf));
493             felec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_mul_ps(rinv21,rinvsq21),krf2));
494
495             /* Update potential sum for this i atom from the interaction with this j atom. */
496             velecsum         = _mm256_add_ps(velecsum,velec);
497
498             fscal            = felec;
499
500             /* Calculate temporary vectorial force */
501             tx               = _mm256_mul_ps(fscal,dx21);
502             ty               = _mm256_mul_ps(fscal,dy21);
503             tz               = _mm256_mul_ps(fscal,dz21);
504
505             /* Update vectorial force */
506             fix2             = _mm256_add_ps(fix2,tx);
507             fiy2             = _mm256_add_ps(fiy2,ty);
508             fiz2             = _mm256_add_ps(fiz2,tz);
509
510             fjx1             = _mm256_add_ps(fjx1,tx);
511             fjy1             = _mm256_add_ps(fjy1,ty);
512             fjz1             = _mm256_add_ps(fjz1,tz);
513
514             /**************************
515              * CALCULATE INTERACTIONS *
516              **************************/
517
518             /* REACTION-FIELD ELECTROSTATICS */
519             velec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_add_ps(rinv22,_mm256_mul_ps(krf,rsq22)),crf));
520             felec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_mul_ps(rinv22,rinvsq22),krf2));
521
522             /* Update potential sum for this i atom from the interaction with this j atom. */
523             velecsum         = _mm256_add_ps(velecsum,velec);
524
525             fscal            = felec;
526
527             /* Calculate temporary vectorial force */
528             tx               = _mm256_mul_ps(fscal,dx22);
529             ty               = _mm256_mul_ps(fscal,dy22);
530             tz               = _mm256_mul_ps(fscal,dz22);
531
532             /* Update vectorial force */
533             fix2             = _mm256_add_ps(fix2,tx);
534             fiy2             = _mm256_add_ps(fiy2,ty);
535             fiz2             = _mm256_add_ps(fiz2,tz);
536
537             fjx2             = _mm256_add_ps(fjx2,tx);
538             fjy2             = _mm256_add_ps(fjy2,ty);
539             fjz2             = _mm256_add_ps(fjz2,tz);
540
541             fjptrA             = f+j_coord_offsetA;
542             fjptrB             = f+j_coord_offsetB;
543             fjptrC             = f+j_coord_offsetC;
544             fjptrD             = f+j_coord_offsetD;
545             fjptrE             = f+j_coord_offsetE;
546             fjptrF             = f+j_coord_offsetF;
547             fjptrG             = f+j_coord_offsetG;
548             fjptrH             = f+j_coord_offsetH;
549
550             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
551                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
552
553             /* Inner loop uses 288 flops */
554         }
555
556         if(jidx<j_index_end)
557         {
558
559             /* Get j neighbor index, and coordinate index */
560             jnrlistA         = jjnr[jidx];
561             jnrlistB         = jjnr[jidx+1];
562             jnrlistC         = jjnr[jidx+2];
563             jnrlistD         = jjnr[jidx+3];
564             jnrlistE         = jjnr[jidx+4];
565             jnrlistF         = jjnr[jidx+5];
566             jnrlistG         = jjnr[jidx+6];
567             jnrlistH         = jjnr[jidx+7];
568             /* Sign of each element will be negative for non-real atoms.
569              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
570              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
571              */
572             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
573                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
574                                             
575             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
576             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
577             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
578             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
579             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
580             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
581             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
582             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
583             j_coord_offsetA  = DIM*jnrA;
584             j_coord_offsetB  = DIM*jnrB;
585             j_coord_offsetC  = DIM*jnrC;
586             j_coord_offsetD  = DIM*jnrD;
587             j_coord_offsetE  = DIM*jnrE;
588             j_coord_offsetF  = DIM*jnrF;
589             j_coord_offsetG  = DIM*jnrG;
590             j_coord_offsetH  = DIM*jnrH;
591
592             /* load j atom coordinates */
593             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
594                                                  x+j_coord_offsetC,x+j_coord_offsetD,
595                                                  x+j_coord_offsetE,x+j_coord_offsetF,
596                                                  x+j_coord_offsetG,x+j_coord_offsetH,
597                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
598
599             /* Calculate displacement vector */
600             dx00             = _mm256_sub_ps(ix0,jx0);
601             dy00             = _mm256_sub_ps(iy0,jy0);
602             dz00             = _mm256_sub_ps(iz0,jz0);
603             dx01             = _mm256_sub_ps(ix0,jx1);
604             dy01             = _mm256_sub_ps(iy0,jy1);
605             dz01             = _mm256_sub_ps(iz0,jz1);
606             dx02             = _mm256_sub_ps(ix0,jx2);
607             dy02             = _mm256_sub_ps(iy0,jy2);
608             dz02             = _mm256_sub_ps(iz0,jz2);
609             dx10             = _mm256_sub_ps(ix1,jx0);
610             dy10             = _mm256_sub_ps(iy1,jy0);
611             dz10             = _mm256_sub_ps(iz1,jz0);
612             dx11             = _mm256_sub_ps(ix1,jx1);
613             dy11             = _mm256_sub_ps(iy1,jy1);
614             dz11             = _mm256_sub_ps(iz1,jz1);
615             dx12             = _mm256_sub_ps(ix1,jx2);
616             dy12             = _mm256_sub_ps(iy1,jy2);
617             dz12             = _mm256_sub_ps(iz1,jz2);
618             dx20             = _mm256_sub_ps(ix2,jx0);
619             dy20             = _mm256_sub_ps(iy2,jy0);
620             dz20             = _mm256_sub_ps(iz2,jz0);
621             dx21             = _mm256_sub_ps(ix2,jx1);
622             dy21             = _mm256_sub_ps(iy2,jy1);
623             dz21             = _mm256_sub_ps(iz2,jz1);
624             dx22             = _mm256_sub_ps(ix2,jx2);
625             dy22             = _mm256_sub_ps(iy2,jy2);
626             dz22             = _mm256_sub_ps(iz2,jz2);
627
628             /* Calculate squared distance and things based on it */
629             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
630             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
631             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
632             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
633             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
634             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
635             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
636             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
637             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
638
639             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
640             rinv01           = gmx_mm256_invsqrt_ps(rsq01);
641             rinv02           = gmx_mm256_invsqrt_ps(rsq02);
642             rinv10           = gmx_mm256_invsqrt_ps(rsq10);
643             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
644             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
645             rinv20           = gmx_mm256_invsqrt_ps(rsq20);
646             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
647             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
648
649             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
650             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
651             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
652             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
653             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
654             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
655             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
656             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
657             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
658
659             fjx0             = _mm256_setzero_ps();
660             fjy0             = _mm256_setzero_ps();
661             fjz0             = _mm256_setzero_ps();
662             fjx1             = _mm256_setzero_ps();
663             fjy1             = _mm256_setzero_ps();
664             fjz1             = _mm256_setzero_ps();
665             fjx2             = _mm256_setzero_ps();
666             fjy2             = _mm256_setzero_ps();
667             fjz2             = _mm256_setzero_ps();
668
669             /**************************
670              * CALCULATE INTERACTIONS *
671              **************************/
672
673             /* REACTION-FIELD ELECTROSTATICS */
674             velec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_add_ps(rinv00,_mm256_mul_ps(krf,rsq00)),crf));
675             felec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_mul_ps(rinv00,rinvsq00),krf2));
676
677             /* Update potential sum for this i atom from the interaction with this j atom. */
678             velec            = _mm256_andnot_ps(dummy_mask,velec);
679             velecsum         = _mm256_add_ps(velecsum,velec);
680
681             fscal            = felec;
682
683             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
684
685             /* Calculate temporary vectorial force */
686             tx               = _mm256_mul_ps(fscal,dx00);
687             ty               = _mm256_mul_ps(fscal,dy00);
688             tz               = _mm256_mul_ps(fscal,dz00);
689
690             /* Update vectorial force */
691             fix0             = _mm256_add_ps(fix0,tx);
692             fiy0             = _mm256_add_ps(fiy0,ty);
693             fiz0             = _mm256_add_ps(fiz0,tz);
694
695             fjx0             = _mm256_add_ps(fjx0,tx);
696             fjy0             = _mm256_add_ps(fjy0,ty);
697             fjz0             = _mm256_add_ps(fjz0,tz);
698
699             /**************************
700              * CALCULATE INTERACTIONS *
701              **************************/
702
703             /* REACTION-FIELD ELECTROSTATICS */
704             velec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_add_ps(rinv01,_mm256_mul_ps(krf,rsq01)),crf));
705             felec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_mul_ps(rinv01,rinvsq01),krf2));
706
707             /* Update potential sum for this i atom from the interaction with this j atom. */
708             velec            = _mm256_andnot_ps(dummy_mask,velec);
709             velecsum         = _mm256_add_ps(velecsum,velec);
710
711             fscal            = felec;
712
713             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
714
715             /* Calculate temporary vectorial force */
716             tx               = _mm256_mul_ps(fscal,dx01);
717             ty               = _mm256_mul_ps(fscal,dy01);
718             tz               = _mm256_mul_ps(fscal,dz01);
719
720             /* Update vectorial force */
721             fix0             = _mm256_add_ps(fix0,tx);
722             fiy0             = _mm256_add_ps(fiy0,ty);
723             fiz0             = _mm256_add_ps(fiz0,tz);
724
725             fjx1             = _mm256_add_ps(fjx1,tx);
726             fjy1             = _mm256_add_ps(fjy1,ty);
727             fjz1             = _mm256_add_ps(fjz1,tz);
728
729             /**************************
730              * CALCULATE INTERACTIONS *
731              **************************/
732
733             /* REACTION-FIELD ELECTROSTATICS */
734             velec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_add_ps(rinv02,_mm256_mul_ps(krf,rsq02)),crf));
735             felec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_mul_ps(rinv02,rinvsq02),krf2));
736
737             /* Update potential sum for this i atom from the interaction with this j atom. */
738             velec            = _mm256_andnot_ps(dummy_mask,velec);
739             velecsum         = _mm256_add_ps(velecsum,velec);
740
741             fscal            = felec;
742
743             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
744
745             /* Calculate temporary vectorial force */
746             tx               = _mm256_mul_ps(fscal,dx02);
747             ty               = _mm256_mul_ps(fscal,dy02);
748             tz               = _mm256_mul_ps(fscal,dz02);
749
750             /* Update vectorial force */
751             fix0             = _mm256_add_ps(fix0,tx);
752             fiy0             = _mm256_add_ps(fiy0,ty);
753             fiz0             = _mm256_add_ps(fiz0,tz);
754
755             fjx2             = _mm256_add_ps(fjx2,tx);
756             fjy2             = _mm256_add_ps(fjy2,ty);
757             fjz2             = _mm256_add_ps(fjz2,tz);
758
759             /**************************
760              * CALCULATE INTERACTIONS *
761              **************************/
762
763             /* REACTION-FIELD ELECTROSTATICS */
764             velec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_add_ps(rinv10,_mm256_mul_ps(krf,rsq10)),crf));
765             felec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_mul_ps(rinv10,rinvsq10),krf2));
766
767             /* Update potential sum for this i atom from the interaction with this j atom. */
768             velec            = _mm256_andnot_ps(dummy_mask,velec);
769             velecsum         = _mm256_add_ps(velecsum,velec);
770
771             fscal            = felec;
772
773             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
774
775             /* Calculate temporary vectorial force */
776             tx               = _mm256_mul_ps(fscal,dx10);
777             ty               = _mm256_mul_ps(fscal,dy10);
778             tz               = _mm256_mul_ps(fscal,dz10);
779
780             /* Update vectorial force */
781             fix1             = _mm256_add_ps(fix1,tx);
782             fiy1             = _mm256_add_ps(fiy1,ty);
783             fiz1             = _mm256_add_ps(fiz1,tz);
784
785             fjx0             = _mm256_add_ps(fjx0,tx);
786             fjy0             = _mm256_add_ps(fjy0,ty);
787             fjz0             = _mm256_add_ps(fjz0,tz);
788
789             /**************************
790              * CALCULATE INTERACTIONS *
791              **************************/
792
793             /* REACTION-FIELD ELECTROSTATICS */
794             velec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_add_ps(rinv11,_mm256_mul_ps(krf,rsq11)),crf));
795             felec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_mul_ps(rinv11,rinvsq11),krf2));
796
797             /* Update potential sum for this i atom from the interaction with this j atom. */
798             velec            = _mm256_andnot_ps(dummy_mask,velec);
799             velecsum         = _mm256_add_ps(velecsum,velec);
800
801             fscal            = felec;
802
803             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
804
805             /* Calculate temporary vectorial force */
806             tx               = _mm256_mul_ps(fscal,dx11);
807             ty               = _mm256_mul_ps(fscal,dy11);
808             tz               = _mm256_mul_ps(fscal,dz11);
809
810             /* Update vectorial force */
811             fix1             = _mm256_add_ps(fix1,tx);
812             fiy1             = _mm256_add_ps(fiy1,ty);
813             fiz1             = _mm256_add_ps(fiz1,tz);
814
815             fjx1             = _mm256_add_ps(fjx1,tx);
816             fjy1             = _mm256_add_ps(fjy1,ty);
817             fjz1             = _mm256_add_ps(fjz1,tz);
818
819             /**************************
820              * CALCULATE INTERACTIONS *
821              **************************/
822
823             /* REACTION-FIELD ELECTROSTATICS */
824             velec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_add_ps(rinv12,_mm256_mul_ps(krf,rsq12)),crf));
825             felec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_mul_ps(rinv12,rinvsq12),krf2));
826
827             /* Update potential sum for this i atom from the interaction with this j atom. */
828             velec            = _mm256_andnot_ps(dummy_mask,velec);
829             velecsum         = _mm256_add_ps(velecsum,velec);
830
831             fscal            = felec;
832
833             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
834
835             /* Calculate temporary vectorial force */
836             tx               = _mm256_mul_ps(fscal,dx12);
837             ty               = _mm256_mul_ps(fscal,dy12);
838             tz               = _mm256_mul_ps(fscal,dz12);
839
840             /* Update vectorial force */
841             fix1             = _mm256_add_ps(fix1,tx);
842             fiy1             = _mm256_add_ps(fiy1,ty);
843             fiz1             = _mm256_add_ps(fiz1,tz);
844
845             fjx2             = _mm256_add_ps(fjx2,tx);
846             fjy2             = _mm256_add_ps(fjy2,ty);
847             fjz2             = _mm256_add_ps(fjz2,tz);
848
849             /**************************
850              * CALCULATE INTERACTIONS *
851              **************************/
852
853             /* REACTION-FIELD ELECTROSTATICS */
854             velec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_add_ps(rinv20,_mm256_mul_ps(krf,rsq20)),crf));
855             felec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_mul_ps(rinv20,rinvsq20),krf2));
856
857             /* Update potential sum for this i atom from the interaction with this j atom. */
858             velec            = _mm256_andnot_ps(dummy_mask,velec);
859             velecsum         = _mm256_add_ps(velecsum,velec);
860
861             fscal            = felec;
862
863             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
864
865             /* Calculate temporary vectorial force */
866             tx               = _mm256_mul_ps(fscal,dx20);
867             ty               = _mm256_mul_ps(fscal,dy20);
868             tz               = _mm256_mul_ps(fscal,dz20);
869
870             /* Update vectorial force */
871             fix2             = _mm256_add_ps(fix2,tx);
872             fiy2             = _mm256_add_ps(fiy2,ty);
873             fiz2             = _mm256_add_ps(fiz2,tz);
874
875             fjx0             = _mm256_add_ps(fjx0,tx);
876             fjy0             = _mm256_add_ps(fjy0,ty);
877             fjz0             = _mm256_add_ps(fjz0,tz);
878
879             /**************************
880              * CALCULATE INTERACTIONS *
881              **************************/
882
883             /* REACTION-FIELD ELECTROSTATICS */
884             velec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_add_ps(rinv21,_mm256_mul_ps(krf,rsq21)),crf));
885             felec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_mul_ps(rinv21,rinvsq21),krf2));
886
887             /* Update potential sum for this i atom from the interaction with this j atom. */
888             velec            = _mm256_andnot_ps(dummy_mask,velec);
889             velecsum         = _mm256_add_ps(velecsum,velec);
890
891             fscal            = felec;
892
893             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
894
895             /* Calculate temporary vectorial force */
896             tx               = _mm256_mul_ps(fscal,dx21);
897             ty               = _mm256_mul_ps(fscal,dy21);
898             tz               = _mm256_mul_ps(fscal,dz21);
899
900             /* Update vectorial force */
901             fix2             = _mm256_add_ps(fix2,tx);
902             fiy2             = _mm256_add_ps(fiy2,ty);
903             fiz2             = _mm256_add_ps(fiz2,tz);
904
905             fjx1             = _mm256_add_ps(fjx1,tx);
906             fjy1             = _mm256_add_ps(fjy1,ty);
907             fjz1             = _mm256_add_ps(fjz1,tz);
908
909             /**************************
910              * CALCULATE INTERACTIONS *
911              **************************/
912
913             /* REACTION-FIELD ELECTROSTATICS */
914             velec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_add_ps(rinv22,_mm256_mul_ps(krf,rsq22)),crf));
915             felec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_mul_ps(rinv22,rinvsq22),krf2));
916
917             /* Update potential sum for this i atom from the interaction with this j atom. */
918             velec            = _mm256_andnot_ps(dummy_mask,velec);
919             velecsum         = _mm256_add_ps(velecsum,velec);
920
921             fscal            = felec;
922
923             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
924
925             /* Calculate temporary vectorial force */
926             tx               = _mm256_mul_ps(fscal,dx22);
927             ty               = _mm256_mul_ps(fscal,dy22);
928             tz               = _mm256_mul_ps(fscal,dz22);
929
930             /* Update vectorial force */
931             fix2             = _mm256_add_ps(fix2,tx);
932             fiy2             = _mm256_add_ps(fiy2,ty);
933             fiz2             = _mm256_add_ps(fiz2,tz);
934
935             fjx2             = _mm256_add_ps(fjx2,tx);
936             fjy2             = _mm256_add_ps(fjy2,ty);
937             fjz2             = _mm256_add_ps(fjz2,tz);
938
939             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
940             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
941             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
942             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
943             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
944             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
945             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
946             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
947
948             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
949                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
950
951             /* Inner loop uses 288 flops */
952         }
953
954         /* End of innermost loop */
955
956         gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
957                                                  f+i_coord_offset,fshift+i_shift_offset);
958
959         ggid                        = gid[iidx];
960         /* Update potential energies */
961         gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
962
963         /* Increment number of inner iterations */
964         inneriter                  += j_index_end - j_index_start;
965
966         /* Outer loop uses 19 flops */
967     }
968
969     /* Increment number of outer iterations */
970     outeriter        += nri;
971
972     /* Update outer/inner flops */
973
974     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3W3_VF,outeriter*19 + inneriter*288);
975 }
976 /*
977  * Gromacs nonbonded kernel:   nb_kernel_ElecRF_VdwNone_GeomW3W3_F_avx_256_single
978  * Electrostatics interaction: ReactionField
979  * VdW interaction:            None
980  * Geometry:                   Water3-Water3
981  * Calculate force/pot:        Force
982  */
983 void
984 nb_kernel_ElecRF_VdwNone_GeomW3W3_F_avx_256_single
985                     (t_nblist                    * gmx_restrict       nlist,
986                      rvec                        * gmx_restrict          xx,
987                      rvec                        * gmx_restrict          ff,
988                      t_forcerec                  * gmx_restrict          fr,
989                      t_mdatoms                   * gmx_restrict     mdatoms,
990                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
991                      t_nrnb                      * gmx_restrict        nrnb)
992 {
993     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
994      * just 0 for non-waters.
995      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
996      * jnr indices corresponding to data put in the four positions in the SIMD register.
997      */
998     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
999     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1000     int              jnrA,jnrB,jnrC,jnrD;
1001     int              jnrE,jnrF,jnrG,jnrH;
1002     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1003     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1004     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1005     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
1006     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
1007     real             rcutoff_scalar;
1008     real             *shiftvec,*fshift,*x,*f;
1009     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
1010     real             scratch[4*DIM];
1011     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1012     real *           vdwioffsetptr0;
1013     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1014     real *           vdwioffsetptr1;
1015     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1016     real *           vdwioffsetptr2;
1017     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1018     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
1019     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1020     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
1021     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1022     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
1023     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1024     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1025     __m256           dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1026     __m256           dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1027     __m256           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1028     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1029     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1030     __m256           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1031     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1032     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1033     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
1034     real             *charge;
1035     __m256           dummy_mask,cutoff_mask;
1036     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
1037     __m256           one     = _mm256_set1_ps(1.0);
1038     __m256           two     = _mm256_set1_ps(2.0);
1039     x                = xx[0];
1040     f                = ff[0];
1041
1042     nri              = nlist->nri;
1043     iinr             = nlist->iinr;
1044     jindex           = nlist->jindex;
1045     jjnr             = nlist->jjnr;
1046     shiftidx         = nlist->shift;
1047     gid              = nlist->gid;
1048     shiftvec         = fr->shift_vec[0];
1049     fshift           = fr->fshift[0];
1050     facel            = _mm256_set1_ps(fr->epsfac);
1051     charge           = mdatoms->chargeA;
1052     krf              = _mm256_set1_ps(fr->ic->k_rf);
1053     krf2             = _mm256_set1_ps(fr->ic->k_rf*2.0);
1054     crf              = _mm256_set1_ps(fr->ic->c_rf);
1055
1056     /* Setup water-specific parameters */
1057     inr              = nlist->iinr[0];
1058     iq0              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
1059     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
1060     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
1061
1062     jq0              = _mm256_set1_ps(charge[inr+0]);
1063     jq1              = _mm256_set1_ps(charge[inr+1]);
1064     jq2              = _mm256_set1_ps(charge[inr+2]);
1065     qq00             = _mm256_mul_ps(iq0,jq0);
1066     qq01             = _mm256_mul_ps(iq0,jq1);
1067     qq02             = _mm256_mul_ps(iq0,jq2);
1068     qq10             = _mm256_mul_ps(iq1,jq0);
1069     qq11             = _mm256_mul_ps(iq1,jq1);
1070     qq12             = _mm256_mul_ps(iq1,jq2);
1071     qq20             = _mm256_mul_ps(iq2,jq0);
1072     qq21             = _mm256_mul_ps(iq2,jq1);
1073     qq22             = _mm256_mul_ps(iq2,jq2);
1074
1075     /* Avoid stupid compiler warnings */
1076     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
1077     j_coord_offsetA = 0;
1078     j_coord_offsetB = 0;
1079     j_coord_offsetC = 0;
1080     j_coord_offsetD = 0;
1081     j_coord_offsetE = 0;
1082     j_coord_offsetF = 0;
1083     j_coord_offsetG = 0;
1084     j_coord_offsetH = 0;
1085
1086     outeriter        = 0;
1087     inneriter        = 0;
1088
1089     for(iidx=0;iidx<4*DIM;iidx++)
1090     {
1091         scratch[iidx] = 0.0;
1092     }
1093
1094     /* Start outer loop over neighborlists */
1095     for(iidx=0; iidx<nri; iidx++)
1096     {
1097         /* Load shift vector for this list */
1098         i_shift_offset   = DIM*shiftidx[iidx];
1099
1100         /* Load limits for loop over neighbors */
1101         j_index_start    = jindex[iidx];
1102         j_index_end      = jindex[iidx+1];
1103
1104         /* Get outer coordinate index */
1105         inr              = iinr[iidx];
1106         i_coord_offset   = DIM*inr;
1107
1108         /* Load i particle coords and add shift vector */
1109         gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1110                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1111
1112         fix0             = _mm256_setzero_ps();
1113         fiy0             = _mm256_setzero_ps();
1114         fiz0             = _mm256_setzero_ps();
1115         fix1             = _mm256_setzero_ps();
1116         fiy1             = _mm256_setzero_ps();
1117         fiz1             = _mm256_setzero_ps();
1118         fix2             = _mm256_setzero_ps();
1119         fiy2             = _mm256_setzero_ps();
1120         fiz2             = _mm256_setzero_ps();
1121
1122         /* Start inner kernel loop */
1123         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
1124         {
1125
1126             /* Get j neighbor index, and coordinate index */
1127             jnrA             = jjnr[jidx];
1128             jnrB             = jjnr[jidx+1];
1129             jnrC             = jjnr[jidx+2];
1130             jnrD             = jjnr[jidx+3];
1131             jnrE             = jjnr[jidx+4];
1132             jnrF             = jjnr[jidx+5];
1133             jnrG             = jjnr[jidx+6];
1134             jnrH             = jjnr[jidx+7];
1135             j_coord_offsetA  = DIM*jnrA;
1136             j_coord_offsetB  = DIM*jnrB;
1137             j_coord_offsetC  = DIM*jnrC;
1138             j_coord_offsetD  = DIM*jnrD;
1139             j_coord_offsetE  = DIM*jnrE;
1140             j_coord_offsetF  = DIM*jnrF;
1141             j_coord_offsetG  = DIM*jnrG;
1142             j_coord_offsetH  = DIM*jnrH;
1143
1144             /* load j atom coordinates */
1145             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1146                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1147                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1148                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1149                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1150
1151             /* Calculate displacement vector */
1152             dx00             = _mm256_sub_ps(ix0,jx0);
1153             dy00             = _mm256_sub_ps(iy0,jy0);
1154             dz00             = _mm256_sub_ps(iz0,jz0);
1155             dx01             = _mm256_sub_ps(ix0,jx1);
1156             dy01             = _mm256_sub_ps(iy0,jy1);
1157             dz01             = _mm256_sub_ps(iz0,jz1);
1158             dx02             = _mm256_sub_ps(ix0,jx2);
1159             dy02             = _mm256_sub_ps(iy0,jy2);
1160             dz02             = _mm256_sub_ps(iz0,jz2);
1161             dx10             = _mm256_sub_ps(ix1,jx0);
1162             dy10             = _mm256_sub_ps(iy1,jy0);
1163             dz10             = _mm256_sub_ps(iz1,jz0);
1164             dx11             = _mm256_sub_ps(ix1,jx1);
1165             dy11             = _mm256_sub_ps(iy1,jy1);
1166             dz11             = _mm256_sub_ps(iz1,jz1);
1167             dx12             = _mm256_sub_ps(ix1,jx2);
1168             dy12             = _mm256_sub_ps(iy1,jy2);
1169             dz12             = _mm256_sub_ps(iz1,jz2);
1170             dx20             = _mm256_sub_ps(ix2,jx0);
1171             dy20             = _mm256_sub_ps(iy2,jy0);
1172             dz20             = _mm256_sub_ps(iz2,jz0);
1173             dx21             = _mm256_sub_ps(ix2,jx1);
1174             dy21             = _mm256_sub_ps(iy2,jy1);
1175             dz21             = _mm256_sub_ps(iz2,jz1);
1176             dx22             = _mm256_sub_ps(ix2,jx2);
1177             dy22             = _mm256_sub_ps(iy2,jy2);
1178             dz22             = _mm256_sub_ps(iz2,jz2);
1179
1180             /* Calculate squared distance and things based on it */
1181             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1182             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1183             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1184             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1185             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1186             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1187             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1188             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1189             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1190
1191             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
1192             rinv01           = gmx_mm256_invsqrt_ps(rsq01);
1193             rinv02           = gmx_mm256_invsqrt_ps(rsq02);
1194             rinv10           = gmx_mm256_invsqrt_ps(rsq10);
1195             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
1196             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
1197             rinv20           = gmx_mm256_invsqrt_ps(rsq20);
1198             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
1199             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
1200
1201             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
1202             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
1203             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
1204             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
1205             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1206             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1207             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
1208             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1209             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1210
1211             fjx0             = _mm256_setzero_ps();
1212             fjy0             = _mm256_setzero_ps();
1213             fjz0             = _mm256_setzero_ps();
1214             fjx1             = _mm256_setzero_ps();
1215             fjy1             = _mm256_setzero_ps();
1216             fjz1             = _mm256_setzero_ps();
1217             fjx2             = _mm256_setzero_ps();
1218             fjy2             = _mm256_setzero_ps();
1219             fjz2             = _mm256_setzero_ps();
1220
1221             /**************************
1222              * CALCULATE INTERACTIONS *
1223              **************************/
1224
1225             /* REACTION-FIELD ELECTROSTATICS */
1226             felec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_mul_ps(rinv00,rinvsq00),krf2));
1227
1228             fscal            = felec;
1229
1230             /* Calculate temporary vectorial force */
1231             tx               = _mm256_mul_ps(fscal,dx00);
1232             ty               = _mm256_mul_ps(fscal,dy00);
1233             tz               = _mm256_mul_ps(fscal,dz00);
1234
1235             /* Update vectorial force */
1236             fix0             = _mm256_add_ps(fix0,tx);
1237             fiy0             = _mm256_add_ps(fiy0,ty);
1238             fiz0             = _mm256_add_ps(fiz0,tz);
1239
1240             fjx0             = _mm256_add_ps(fjx0,tx);
1241             fjy0             = _mm256_add_ps(fjy0,ty);
1242             fjz0             = _mm256_add_ps(fjz0,tz);
1243
1244             /**************************
1245              * CALCULATE INTERACTIONS *
1246              **************************/
1247
1248             /* REACTION-FIELD ELECTROSTATICS */
1249             felec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_mul_ps(rinv01,rinvsq01),krf2));
1250
1251             fscal            = felec;
1252
1253             /* Calculate temporary vectorial force */
1254             tx               = _mm256_mul_ps(fscal,dx01);
1255             ty               = _mm256_mul_ps(fscal,dy01);
1256             tz               = _mm256_mul_ps(fscal,dz01);
1257
1258             /* Update vectorial force */
1259             fix0             = _mm256_add_ps(fix0,tx);
1260             fiy0             = _mm256_add_ps(fiy0,ty);
1261             fiz0             = _mm256_add_ps(fiz0,tz);
1262
1263             fjx1             = _mm256_add_ps(fjx1,tx);
1264             fjy1             = _mm256_add_ps(fjy1,ty);
1265             fjz1             = _mm256_add_ps(fjz1,tz);
1266
1267             /**************************
1268              * CALCULATE INTERACTIONS *
1269              **************************/
1270
1271             /* REACTION-FIELD ELECTROSTATICS */
1272             felec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_mul_ps(rinv02,rinvsq02),krf2));
1273
1274             fscal            = felec;
1275
1276             /* Calculate temporary vectorial force */
1277             tx               = _mm256_mul_ps(fscal,dx02);
1278             ty               = _mm256_mul_ps(fscal,dy02);
1279             tz               = _mm256_mul_ps(fscal,dz02);
1280
1281             /* Update vectorial force */
1282             fix0             = _mm256_add_ps(fix0,tx);
1283             fiy0             = _mm256_add_ps(fiy0,ty);
1284             fiz0             = _mm256_add_ps(fiz0,tz);
1285
1286             fjx2             = _mm256_add_ps(fjx2,tx);
1287             fjy2             = _mm256_add_ps(fjy2,ty);
1288             fjz2             = _mm256_add_ps(fjz2,tz);
1289
1290             /**************************
1291              * CALCULATE INTERACTIONS *
1292              **************************/
1293
1294             /* REACTION-FIELD ELECTROSTATICS */
1295             felec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_mul_ps(rinv10,rinvsq10),krf2));
1296
1297             fscal            = felec;
1298
1299             /* Calculate temporary vectorial force */
1300             tx               = _mm256_mul_ps(fscal,dx10);
1301             ty               = _mm256_mul_ps(fscal,dy10);
1302             tz               = _mm256_mul_ps(fscal,dz10);
1303
1304             /* Update vectorial force */
1305             fix1             = _mm256_add_ps(fix1,tx);
1306             fiy1             = _mm256_add_ps(fiy1,ty);
1307             fiz1             = _mm256_add_ps(fiz1,tz);
1308
1309             fjx0             = _mm256_add_ps(fjx0,tx);
1310             fjy0             = _mm256_add_ps(fjy0,ty);
1311             fjz0             = _mm256_add_ps(fjz0,tz);
1312
1313             /**************************
1314              * CALCULATE INTERACTIONS *
1315              **************************/
1316
1317             /* REACTION-FIELD ELECTROSTATICS */
1318             felec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_mul_ps(rinv11,rinvsq11),krf2));
1319
1320             fscal            = felec;
1321
1322             /* Calculate temporary vectorial force */
1323             tx               = _mm256_mul_ps(fscal,dx11);
1324             ty               = _mm256_mul_ps(fscal,dy11);
1325             tz               = _mm256_mul_ps(fscal,dz11);
1326
1327             /* Update vectorial force */
1328             fix1             = _mm256_add_ps(fix1,tx);
1329             fiy1             = _mm256_add_ps(fiy1,ty);
1330             fiz1             = _mm256_add_ps(fiz1,tz);
1331
1332             fjx1             = _mm256_add_ps(fjx1,tx);
1333             fjy1             = _mm256_add_ps(fjy1,ty);
1334             fjz1             = _mm256_add_ps(fjz1,tz);
1335
1336             /**************************
1337              * CALCULATE INTERACTIONS *
1338              **************************/
1339
1340             /* REACTION-FIELD ELECTROSTATICS */
1341             felec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_mul_ps(rinv12,rinvsq12),krf2));
1342
1343             fscal            = felec;
1344
1345             /* Calculate temporary vectorial force */
1346             tx               = _mm256_mul_ps(fscal,dx12);
1347             ty               = _mm256_mul_ps(fscal,dy12);
1348             tz               = _mm256_mul_ps(fscal,dz12);
1349
1350             /* Update vectorial force */
1351             fix1             = _mm256_add_ps(fix1,tx);
1352             fiy1             = _mm256_add_ps(fiy1,ty);
1353             fiz1             = _mm256_add_ps(fiz1,tz);
1354
1355             fjx2             = _mm256_add_ps(fjx2,tx);
1356             fjy2             = _mm256_add_ps(fjy2,ty);
1357             fjz2             = _mm256_add_ps(fjz2,tz);
1358
1359             /**************************
1360              * CALCULATE INTERACTIONS *
1361              **************************/
1362
1363             /* REACTION-FIELD ELECTROSTATICS */
1364             felec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_mul_ps(rinv20,rinvsq20),krf2));
1365
1366             fscal            = felec;
1367
1368             /* Calculate temporary vectorial force */
1369             tx               = _mm256_mul_ps(fscal,dx20);
1370             ty               = _mm256_mul_ps(fscal,dy20);
1371             tz               = _mm256_mul_ps(fscal,dz20);
1372
1373             /* Update vectorial force */
1374             fix2             = _mm256_add_ps(fix2,tx);
1375             fiy2             = _mm256_add_ps(fiy2,ty);
1376             fiz2             = _mm256_add_ps(fiz2,tz);
1377
1378             fjx0             = _mm256_add_ps(fjx0,tx);
1379             fjy0             = _mm256_add_ps(fjy0,ty);
1380             fjz0             = _mm256_add_ps(fjz0,tz);
1381
1382             /**************************
1383              * CALCULATE INTERACTIONS *
1384              **************************/
1385
1386             /* REACTION-FIELD ELECTROSTATICS */
1387             felec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_mul_ps(rinv21,rinvsq21),krf2));
1388
1389             fscal            = felec;
1390
1391             /* Calculate temporary vectorial force */
1392             tx               = _mm256_mul_ps(fscal,dx21);
1393             ty               = _mm256_mul_ps(fscal,dy21);
1394             tz               = _mm256_mul_ps(fscal,dz21);
1395
1396             /* Update vectorial force */
1397             fix2             = _mm256_add_ps(fix2,tx);
1398             fiy2             = _mm256_add_ps(fiy2,ty);
1399             fiz2             = _mm256_add_ps(fiz2,tz);
1400
1401             fjx1             = _mm256_add_ps(fjx1,tx);
1402             fjy1             = _mm256_add_ps(fjy1,ty);
1403             fjz1             = _mm256_add_ps(fjz1,tz);
1404
1405             /**************************
1406              * CALCULATE INTERACTIONS *
1407              **************************/
1408
1409             /* REACTION-FIELD ELECTROSTATICS */
1410             felec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_mul_ps(rinv22,rinvsq22),krf2));
1411
1412             fscal            = felec;
1413
1414             /* Calculate temporary vectorial force */
1415             tx               = _mm256_mul_ps(fscal,dx22);
1416             ty               = _mm256_mul_ps(fscal,dy22);
1417             tz               = _mm256_mul_ps(fscal,dz22);
1418
1419             /* Update vectorial force */
1420             fix2             = _mm256_add_ps(fix2,tx);
1421             fiy2             = _mm256_add_ps(fiy2,ty);
1422             fiz2             = _mm256_add_ps(fiz2,tz);
1423
1424             fjx2             = _mm256_add_ps(fjx2,tx);
1425             fjy2             = _mm256_add_ps(fjy2,ty);
1426             fjz2             = _mm256_add_ps(fjz2,tz);
1427
1428             fjptrA             = f+j_coord_offsetA;
1429             fjptrB             = f+j_coord_offsetB;
1430             fjptrC             = f+j_coord_offsetC;
1431             fjptrD             = f+j_coord_offsetD;
1432             fjptrE             = f+j_coord_offsetE;
1433             fjptrF             = f+j_coord_offsetF;
1434             fjptrG             = f+j_coord_offsetG;
1435             fjptrH             = f+j_coord_offsetH;
1436
1437             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1438                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1439
1440             /* Inner loop uses 243 flops */
1441         }
1442
1443         if(jidx<j_index_end)
1444         {
1445
1446             /* Get j neighbor index, and coordinate index */
1447             jnrlistA         = jjnr[jidx];
1448             jnrlistB         = jjnr[jidx+1];
1449             jnrlistC         = jjnr[jidx+2];
1450             jnrlistD         = jjnr[jidx+3];
1451             jnrlistE         = jjnr[jidx+4];
1452             jnrlistF         = jjnr[jidx+5];
1453             jnrlistG         = jjnr[jidx+6];
1454             jnrlistH         = jjnr[jidx+7];
1455             /* Sign of each element will be negative for non-real atoms.
1456              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1457              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1458              */
1459             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
1460                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
1461                                             
1462             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
1463             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
1464             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
1465             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
1466             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
1467             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
1468             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
1469             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
1470             j_coord_offsetA  = DIM*jnrA;
1471             j_coord_offsetB  = DIM*jnrB;
1472             j_coord_offsetC  = DIM*jnrC;
1473             j_coord_offsetD  = DIM*jnrD;
1474             j_coord_offsetE  = DIM*jnrE;
1475             j_coord_offsetF  = DIM*jnrF;
1476             j_coord_offsetG  = DIM*jnrG;
1477             j_coord_offsetH  = DIM*jnrH;
1478
1479             /* load j atom coordinates */
1480             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1481                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1482                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1483                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1484                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1485
1486             /* Calculate displacement vector */
1487             dx00             = _mm256_sub_ps(ix0,jx0);
1488             dy00             = _mm256_sub_ps(iy0,jy0);
1489             dz00             = _mm256_sub_ps(iz0,jz0);
1490             dx01             = _mm256_sub_ps(ix0,jx1);
1491             dy01             = _mm256_sub_ps(iy0,jy1);
1492             dz01             = _mm256_sub_ps(iz0,jz1);
1493             dx02             = _mm256_sub_ps(ix0,jx2);
1494             dy02             = _mm256_sub_ps(iy0,jy2);
1495             dz02             = _mm256_sub_ps(iz0,jz2);
1496             dx10             = _mm256_sub_ps(ix1,jx0);
1497             dy10             = _mm256_sub_ps(iy1,jy0);
1498             dz10             = _mm256_sub_ps(iz1,jz0);
1499             dx11             = _mm256_sub_ps(ix1,jx1);
1500             dy11             = _mm256_sub_ps(iy1,jy1);
1501             dz11             = _mm256_sub_ps(iz1,jz1);
1502             dx12             = _mm256_sub_ps(ix1,jx2);
1503             dy12             = _mm256_sub_ps(iy1,jy2);
1504             dz12             = _mm256_sub_ps(iz1,jz2);
1505             dx20             = _mm256_sub_ps(ix2,jx0);
1506             dy20             = _mm256_sub_ps(iy2,jy0);
1507             dz20             = _mm256_sub_ps(iz2,jz0);
1508             dx21             = _mm256_sub_ps(ix2,jx1);
1509             dy21             = _mm256_sub_ps(iy2,jy1);
1510             dz21             = _mm256_sub_ps(iz2,jz1);
1511             dx22             = _mm256_sub_ps(ix2,jx2);
1512             dy22             = _mm256_sub_ps(iy2,jy2);
1513             dz22             = _mm256_sub_ps(iz2,jz2);
1514
1515             /* Calculate squared distance and things based on it */
1516             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1517             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1518             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1519             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1520             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1521             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1522             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1523             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1524             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1525
1526             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
1527             rinv01           = gmx_mm256_invsqrt_ps(rsq01);
1528             rinv02           = gmx_mm256_invsqrt_ps(rsq02);
1529             rinv10           = gmx_mm256_invsqrt_ps(rsq10);
1530             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
1531             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
1532             rinv20           = gmx_mm256_invsqrt_ps(rsq20);
1533             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
1534             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
1535
1536             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
1537             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
1538             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
1539             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
1540             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1541             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1542             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
1543             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1544             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1545
1546             fjx0             = _mm256_setzero_ps();
1547             fjy0             = _mm256_setzero_ps();
1548             fjz0             = _mm256_setzero_ps();
1549             fjx1             = _mm256_setzero_ps();
1550             fjy1             = _mm256_setzero_ps();
1551             fjz1             = _mm256_setzero_ps();
1552             fjx2             = _mm256_setzero_ps();
1553             fjy2             = _mm256_setzero_ps();
1554             fjz2             = _mm256_setzero_ps();
1555
1556             /**************************
1557              * CALCULATE INTERACTIONS *
1558              **************************/
1559
1560             /* REACTION-FIELD ELECTROSTATICS */
1561             felec            = _mm256_mul_ps(qq00,_mm256_sub_ps(_mm256_mul_ps(rinv00,rinvsq00),krf2));
1562
1563             fscal            = felec;
1564
1565             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1566
1567             /* Calculate temporary vectorial force */
1568             tx               = _mm256_mul_ps(fscal,dx00);
1569             ty               = _mm256_mul_ps(fscal,dy00);
1570             tz               = _mm256_mul_ps(fscal,dz00);
1571
1572             /* Update vectorial force */
1573             fix0             = _mm256_add_ps(fix0,tx);
1574             fiy0             = _mm256_add_ps(fiy0,ty);
1575             fiz0             = _mm256_add_ps(fiz0,tz);
1576
1577             fjx0             = _mm256_add_ps(fjx0,tx);
1578             fjy0             = _mm256_add_ps(fjy0,ty);
1579             fjz0             = _mm256_add_ps(fjz0,tz);
1580
1581             /**************************
1582              * CALCULATE INTERACTIONS *
1583              **************************/
1584
1585             /* REACTION-FIELD ELECTROSTATICS */
1586             felec            = _mm256_mul_ps(qq01,_mm256_sub_ps(_mm256_mul_ps(rinv01,rinvsq01),krf2));
1587
1588             fscal            = felec;
1589
1590             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1591
1592             /* Calculate temporary vectorial force */
1593             tx               = _mm256_mul_ps(fscal,dx01);
1594             ty               = _mm256_mul_ps(fscal,dy01);
1595             tz               = _mm256_mul_ps(fscal,dz01);
1596
1597             /* Update vectorial force */
1598             fix0             = _mm256_add_ps(fix0,tx);
1599             fiy0             = _mm256_add_ps(fiy0,ty);
1600             fiz0             = _mm256_add_ps(fiz0,tz);
1601
1602             fjx1             = _mm256_add_ps(fjx1,tx);
1603             fjy1             = _mm256_add_ps(fjy1,ty);
1604             fjz1             = _mm256_add_ps(fjz1,tz);
1605
1606             /**************************
1607              * CALCULATE INTERACTIONS *
1608              **************************/
1609
1610             /* REACTION-FIELD ELECTROSTATICS */
1611             felec            = _mm256_mul_ps(qq02,_mm256_sub_ps(_mm256_mul_ps(rinv02,rinvsq02),krf2));
1612
1613             fscal            = felec;
1614
1615             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1616
1617             /* Calculate temporary vectorial force */
1618             tx               = _mm256_mul_ps(fscal,dx02);
1619             ty               = _mm256_mul_ps(fscal,dy02);
1620             tz               = _mm256_mul_ps(fscal,dz02);
1621
1622             /* Update vectorial force */
1623             fix0             = _mm256_add_ps(fix0,tx);
1624             fiy0             = _mm256_add_ps(fiy0,ty);
1625             fiz0             = _mm256_add_ps(fiz0,tz);
1626
1627             fjx2             = _mm256_add_ps(fjx2,tx);
1628             fjy2             = _mm256_add_ps(fjy2,ty);
1629             fjz2             = _mm256_add_ps(fjz2,tz);
1630
1631             /**************************
1632              * CALCULATE INTERACTIONS *
1633              **************************/
1634
1635             /* REACTION-FIELD ELECTROSTATICS */
1636             felec            = _mm256_mul_ps(qq10,_mm256_sub_ps(_mm256_mul_ps(rinv10,rinvsq10),krf2));
1637
1638             fscal            = felec;
1639
1640             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1641
1642             /* Calculate temporary vectorial force */
1643             tx               = _mm256_mul_ps(fscal,dx10);
1644             ty               = _mm256_mul_ps(fscal,dy10);
1645             tz               = _mm256_mul_ps(fscal,dz10);
1646
1647             /* Update vectorial force */
1648             fix1             = _mm256_add_ps(fix1,tx);
1649             fiy1             = _mm256_add_ps(fiy1,ty);
1650             fiz1             = _mm256_add_ps(fiz1,tz);
1651
1652             fjx0             = _mm256_add_ps(fjx0,tx);
1653             fjy0             = _mm256_add_ps(fjy0,ty);
1654             fjz0             = _mm256_add_ps(fjz0,tz);
1655
1656             /**************************
1657              * CALCULATE INTERACTIONS *
1658              **************************/
1659
1660             /* REACTION-FIELD ELECTROSTATICS */
1661             felec            = _mm256_mul_ps(qq11,_mm256_sub_ps(_mm256_mul_ps(rinv11,rinvsq11),krf2));
1662
1663             fscal            = felec;
1664
1665             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1666
1667             /* Calculate temporary vectorial force */
1668             tx               = _mm256_mul_ps(fscal,dx11);
1669             ty               = _mm256_mul_ps(fscal,dy11);
1670             tz               = _mm256_mul_ps(fscal,dz11);
1671
1672             /* Update vectorial force */
1673             fix1             = _mm256_add_ps(fix1,tx);
1674             fiy1             = _mm256_add_ps(fiy1,ty);
1675             fiz1             = _mm256_add_ps(fiz1,tz);
1676
1677             fjx1             = _mm256_add_ps(fjx1,tx);
1678             fjy1             = _mm256_add_ps(fjy1,ty);
1679             fjz1             = _mm256_add_ps(fjz1,tz);
1680
1681             /**************************
1682              * CALCULATE INTERACTIONS *
1683              **************************/
1684
1685             /* REACTION-FIELD ELECTROSTATICS */
1686             felec            = _mm256_mul_ps(qq12,_mm256_sub_ps(_mm256_mul_ps(rinv12,rinvsq12),krf2));
1687
1688             fscal            = felec;
1689
1690             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1691
1692             /* Calculate temporary vectorial force */
1693             tx               = _mm256_mul_ps(fscal,dx12);
1694             ty               = _mm256_mul_ps(fscal,dy12);
1695             tz               = _mm256_mul_ps(fscal,dz12);
1696
1697             /* Update vectorial force */
1698             fix1             = _mm256_add_ps(fix1,tx);
1699             fiy1             = _mm256_add_ps(fiy1,ty);
1700             fiz1             = _mm256_add_ps(fiz1,tz);
1701
1702             fjx2             = _mm256_add_ps(fjx2,tx);
1703             fjy2             = _mm256_add_ps(fjy2,ty);
1704             fjz2             = _mm256_add_ps(fjz2,tz);
1705
1706             /**************************
1707              * CALCULATE INTERACTIONS *
1708              **************************/
1709
1710             /* REACTION-FIELD ELECTROSTATICS */
1711             felec            = _mm256_mul_ps(qq20,_mm256_sub_ps(_mm256_mul_ps(rinv20,rinvsq20),krf2));
1712
1713             fscal            = felec;
1714
1715             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1716
1717             /* Calculate temporary vectorial force */
1718             tx               = _mm256_mul_ps(fscal,dx20);
1719             ty               = _mm256_mul_ps(fscal,dy20);
1720             tz               = _mm256_mul_ps(fscal,dz20);
1721
1722             /* Update vectorial force */
1723             fix2             = _mm256_add_ps(fix2,tx);
1724             fiy2             = _mm256_add_ps(fiy2,ty);
1725             fiz2             = _mm256_add_ps(fiz2,tz);
1726
1727             fjx0             = _mm256_add_ps(fjx0,tx);
1728             fjy0             = _mm256_add_ps(fjy0,ty);
1729             fjz0             = _mm256_add_ps(fjz0,tz);
1730
1731             /**************************
1732              * CALCULATE INTERACTIONS *
1733              **************************/
1734
1735             /* REACTION-FIELD ELECTROSTATICS */
1736             felec            = _mm256_mul_ps(qq21,_mm256_sub_ps(_mm256_mul_ps(rinv21,rinvsq21),krf2));
1737
1738             fscal            = felec;
1739
1740             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1741
1742             /* Calculate temporary vectorial force */
1743             tx               = _mm256_mul_ps(fscal,dx21);
1744             ty               = _mm256_mul_ps(fscal,dy21);
1745             tz               = _mm256_mul_ps(fscal,dz21);
1746
1747             /* Update vectorial force */
1748             fix2             = _mm256_add_ps(fix2,tx);
1749             fiy2             = _mm256_add_ps(fiy2,ty);
1750             fiz2             = _mm256_add_ps(fiz2,tz);
1751
1752             fjx1             = _mm256_add_ps(fjx1,tx);
1753             fjy1             = _mm256_add_ps(fjy1,ty);
1754             fjz1             = _mm256_add_ps(fjz1,tz);
1755
1756             /**************************
1757              * CALCULATE INTERACTIONS *
1758              **************************/
1759
1760             /* REACTION-FIELD ELECTROSTATICS */
1761             felec            = _mm256_mul_ps(qq22,_mm256_sub_ps(_mm256_mul_ps(rinv22,rinvsq22),krf2));
1762
1763             fscal            = felec;
1764
1765             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1766
1767             /* Calculate temporary vectorial force */
1768             tx               = _mm256_mul_ps(fscal,dx22);
1769             ty               = _mm256_mul_ps(fscal,dy22);
1770             tz               = _mm256_mul_ps(fscal,dz22);
1771
1772             /* Update vectorial force */
1773             fix2             = _mm256_add_ps(fix2,tx);
1774             fiy2             = _mm256_add_ps(fiy2,ty);
1775             fiz2             = _mm256_add_ps(fiz2,tz);
1776
1777             fjx2             = _mm256_add_ps(fjx2,tx);
1778             fjy2             = _mm256_add_ps(fjy2,ty);
1779             fjz2             = _mm256_add_ps(fjz2,tz);
1780
1781             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1782             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1783             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1784             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1785             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1786             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1787             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1788             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1789
1790             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1791                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1792
1793             /* Inner loop uses 243 flops */
1794         }
1795
1796         /* End of innermost loop */
1797
1798         gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1799                                                  f+i_coord_offset,fshift+i_shift_offset);
1800
1801         /* Increment number of inner iterations */
1802         inneriter                  += j_index_end - j_index_start;
1803
1804         /* Outer loop uses 18 flops */
1805     }
1806
1807     /* Increment number of outer iterations */
1808     outeriter        += nri;
1809
1810     /* Update outer/inner flops */
1811
1812     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3W3_F,outeriter*18 + inneriter*243);
1813 }