Remove all unnecessary HAVE_CONFIG_H
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_avx_256_single / nb_kernel_ElecNone_VdwLJSw_GeomP1P1_avx_256_single.c
1 /*
2  * This file is part of the GROMACS molecular simulation package.
3  *
4  * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6  * and including many others, as listed in the AUTHORS file in the
7  * top-level source directory and at http://www.gromacs.org.
8  *
9  * GROMACS is free software; you can redistribute it and/or
10  * modify it under the terms of the GNU Lesser General Public License
11  * as published by the Free Software Foundation; either version 2.1
12  * of the License, or (at your option) any later version.
13  *
14  * GROMACS is distributed in the hope that it will be useful,
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16  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
17  * Lesser General Public License for more details.
18  *
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34  */
35 /*
36  * Note: this file was generated by the GROMACS avx_256_single kernel generator.
37  */
38 #include "config.h"
39
40 #include <math.h>
41
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "nrnb.h"
46
47 #include "gromacs/simd/math_x86_avx_256_single.h"
48 #include "kernelutil_x86_avx_256_single.h"
49
50 /*
51  * Gromacs nonbonded kernel:   nb_kernel_ElecNone_VdwLJSw_GeomP1P1_VF_avx_256_single
52  * Electrostatics interaction: None
53  * VdW interaction:            LennardJones
54  * Geometry:                   Particle-Particle
55  * Calculate force/pot:        PotentialAndForce
56  */
57 void
58 nb_kernel_ElecNone_VdwLJSw_GeomP1P1_VF_avx_256_single
59                     (t_nblist                    * gmx_restrict       nlist,
60                      rvec                        * gmx_restrict          xx,
61                      rvec                        * gmx_restrict          ff,
62                      t_forcerec                  * gmx_restrict          fr,
63                      t_mdatoms                   * gmx_restrict     mdatoms,
64                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65                      t_nrnb                      * gmx_restrict        nrnb)
66 {
67     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
68      * just 0 for non-waters.
69      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
70      * jnr indices corresponding to data put in the four positions in the SIMD register.
71      */
72     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
73     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74     int              jnrA,jnrB,jnrC,jnrD;
75     int              jnrE,jnrF,jnrG,jnrH;
76     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
77     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
78     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
79     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
80     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
81     real             rcutoff_scalar;
82     real             *shiftvec,*fshift,*x,*f;
83     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
84     real             scratch[4*DIM];
85     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86     real *           vdwioffsetptr0;
87     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
88     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
89     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
91     int              nvdwtype;
92     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
93     int              *vdwtype;
94     real             *vdwparam;
95     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
96     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
97     __m256           rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
98     real             rswitch_scalar,d_scalar;
99     __m256           dummy_mask,cutoff_mask;
100     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
101     __m256           one     = _mm256_set1_ps(1.0);
102     __m256           two     = _mm256_set1_ps(2.0);
103     x                = xx[0];
104     f                = ff[0];
105
106     nri              = nlist->nri;
107     iinr             = nlist->iinr;
108     jindex           = nlist->jindex;
109     jjnr             = nlist->jjnr;
110     shiftidx         = nlist->shift;
111     gid              = nlist->gid;
112     shiftvec         = fr->shift_vec[0];
113     fshift           = fr->fshift[0];
114     nvdwtype         = fr->ntype;
115     vdwparam         = fr->nbfp;
116     vdwtype          = mdatoms->typeA;
117
118     rcutoff_scalar   = fr->rvdw;
119     rcutoff          = _mm256_set1_ps(rcutoff_scalar);
120     rcutoff2         = _mm256_mul_ps(rcutoff,rcutoff);
121
122     rswitch_scalar   = fr->rvdw_switch;
123     rswitch          = _mm256_set1_ps(rswitch_scalar);
124     /* Setup switch parameters */
125     d_scalar         = rcutoff_scalar-rswitch_scalar;
126     d                = _mm256_set1_ps(d_scalar);
127     swV3             = _mm256_set1_ps(-10.0/(d_scalar*d_scalar*d_scalar));
128     swV4             = _mm256_set1_ps( 15.0/(d_scalar*d_scalar*d_scalar*d_scalar));
129     swV5             = _mm256_set1_ps( -6.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
130     swF2             = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar));
131     swF3             = _mm256_set1_ps( 60.0/(d_scalar*d_scalar*d_scalar*d_scalar));
132     swF4             = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
133
134     /* Avoid stupid compiler warnings */
135     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
136     j_coord_offsetA = 0;
137     j_coord_offsetB = 0;
138     j_coord_offsetC = 0;
139     j_coord_offsetD = 0;
140     j_coord_offsetE = 0;
141     j_coord_offsetF = 0;
142     j_coord_offsetG = 0;
143     j_coord_offsetH = 0;
144
145     outeriter        = 0;
146     inneriter        = 0;
147
148     for(iidx=0;iidx<4*DIM;iidx++)
149     {
150         scratch[iidx] = 0.0;
151     }
152
153     /* Start outer loop over neighborlists */
154     for(iidx=0; iidx<nri; iidx++)
155     {
156         /* Load shift vector for this list */
157         i_shift_offset   = DIM*shiftidx[iidx];
158
159         /* Load limits for loop over neighbors */
160         j_index_start    = jindex[iidx];
161         j_index_end      = jindex[iidx+1];
162
163         /* Get outer coordinate index */
164         inr              = iinr[iidx];
165         i_coord_offset   = DIM*inr;
166
167         /* Load i particle coords and add shift vector */
168         gmx_mm256_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
169
170         fix0             = _mm256_setzero_ps();
171         fiy0             = _mm256_setzero_ps();
172         fiz0             = _mm256_setzero_ps();
173
174         /* Load parameters for i particles */
175         vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
176
177         /* Reset potential sums */
178         vvdwsum          = _mm256_setzero_ps();
179
180         /* Start inner kernel loop */
181         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
182         {
183
184             /* Get j neighbor index, and coordinate index */
185             jnrA             = jjnr[jidx];
186             jnrB             = jjnr[jidx+1];
187             jnrC             = jjnr[jidx+2];
188             jnrD             = jjnr[jidx+3];
189             jnrE             = jjnr[jidx+4];
190             jnrF             = jjnr[jidx+5];
191             jnrG             = jjnr[jidx+6];
192             jnrH             = jjnr[jidx+7];
193             j_coord_offsetA  = DIM*jnrA;
194             j_coord_offsetB  = DIM*jnrB;
195             j_coord_offsetC  = DIM*jnrC;
196             j_coord_offsetD  = DIM*jnrD;
197             j_coord_offsetE  = DIM*jnrE;
198             j_coord_offsetF  = DIM*jnrF;
199             j_coord_offsetG  = DIM*jnrG;
200             j_coord_offsetH  = DIM*jnrH;
201
202             /* load j atom coordinates */
203             gmx_mm256_load_1rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
204                                                  x+j_coord_offsetC,x+j_coord_offsetD,
205                                                  x+j_coord_offsetE,x+j_coord_offsetF,
206                                                  x+j_coord_offsetG,x+j_coord_offsetH,
207                                                  &jx0,&jy0,&jz0);
208
209             /* Calculate displacement vector */
210             dx00             = _mm256_sub_ps(ix0,jx0);
211             dy00             = _mm256_sub_ps(iy0,jy0);
212             dz00             = _mm256_sub_ps(iz0,jz0);
213
214             /* Calculate squared distance and things based on it */
215             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
216
217             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
218
219             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
220
221             /* Load parameters for j particles */
222             vdwjidx0A        = 2*vdwtype[jnrA+0];
223             vdwjidx0B        = 2*vdwtype[jnrB+0];
224             vdwjidx0C        = 2*vdwtype[jnrC+0];
225             vdwjidx0D        = 2*vdwtype[jnrD+0];
226             vdwjidx0E        = 2*vdwtype[jnrE+0];
227             vdwjidx0F        = 2*vdwtype[jnrF+0];
228             vdwjidx0G        = 2*vdwtype[jnrG+0];
229             vdwjidx0H        = 2*vdwtype[jnrH+0];
230
231             /**************************
232              * CALCULATE INTERACTIONS *
233              **************************/
234
235             if (gmx_mm256_any_lt(rsq00,rcutoff2))
236             {
237
238             r00              = _mm256_mul_ps(rsq00,rinv00);
239
240             /* Compute parameters for interactions between i and j atoms */
241             gmx_mm256_load_8pair_swizzle_ps(vdwioffsetptr0+vdwjidx0A,
242                                             vdwioffsetptr0+vdwjidx0B,
243                                             vdwioffsetptr0+vdwjidx0C,
244                                             vdwioffsetptr0+vdwjidx0D,
245                                             vdwioffsetptr0+vdwjidx0E,
246                                             vdwioffsetptr0+vdwjidx0F,
247                                             vdwioffsetptr0+vdwjidx0G,
248                                             vdwioffsetptr0+vdwjidx0H,
249                                             &c6_00,&c12_00);
250
251             /* LENNARD-JONES DISPERSION/REPULSION */
252
253             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
254             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
255             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
256             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
257             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
258
259             d                = _mm256_sub_ps(r00,rswitch);
260             d                = _mm256_max_ps(d,_mm256_setzero_ps());
261             d2               = _mm256_mul_ps(d,d);
262             sw               = _mm256_add_ps(one,_mm256_mul_ps(d2,_mm256_mul_ps(d,_mm256_add_ps(swV3,_mm256_mul_ps(d,_mm256_add_ps(swV4,_mm256_mul_ps(d,swV5)))))));
263
264             dsw              = _mm256_mul_ps(d2,_mm256_add_ps(swF2,_mm256_mul_ps(d,_mm256_add_ps(swF3,_mm256_mul_ps(d,swF4)))));
265
266             /* Evaluate switch function */
267             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
268             fvdw             = _mm256_sub_ps( _mm256_mul_ps(fvdw,sw) , _mm256_mul_ps(rinv00,_mm256_mul_ps(vvdw,dsw)) );
269             vvdw             = _mm256_mul_ps(vvdw,sw);
270             cutoff_mask      = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
271
272             /* Update potential sum for this i atom from the interaction with this j atom. */
273             vvdw             = _mm256_and_ps(vvdw,cutoff_mask);
274             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
275
276             fscal            = fvdw;
277
278             fscal            = _mm256_and_ps(fscal,cutoff_mask);
279
280             /* Calculate temporary vectorial force */
281             tx               = _mm256_mul_ps(fscal,dx00);
282             ty               = _mm256_mul_ps(fscal,dy00);
283             tz               = _mm256_mul_ps(fscal,dz00);
284
285             /* Update vectorial force */
286             fix0             = _mm256_add_ps(fix0,tx);
287             fiy0             = _mm256_add_ps(fiy0,ty);
288             fiz0             = _mm256_add_ps(fiz0,tz);
289
290             fjptrA             = f+j_coord_offsetA;
291             fjptrB             = f+j_coord_offsetB;
292             fjptrC             = f+j_coord_offsetC;
293             fjptrD             = f+j_coord_offsetD;
294             fjptrE             = f+j_coord_offsetE;
295             fjptrF             = f+j_coord_offsetF;
296             fjptrG             = f+j_coord_offsetG;
297             fjptrH             = f+j_coord_offsetH;
298             gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,tx,ty,tz);
299
300             }
301
302             /* Inner loop uses 59 flops */
303         }
304
305         if(jidx<j_index_end)
306         {
307
308             /* Get j neighbor index, and coordinate index */
309             jnrlistA         = jjnr[jidx];
310             jnrlistB         = jjnr[jidx+1];
311             jnrlistC         = jjnr[jidx+2];
312             jnrlistD         = jjnr[jidx+3];
313             jnrlistE         = jjnr[jidx+4];
314             jnrlistF         = jjnr[jidx+5];
315             jnrlistG         = jjnr[jidx+6];
316             jnrlistH         = jjnr[jidx+7];
317             /* Sign of each element will be negative for non-real atoms.
318              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
319              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
320              */
321             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
322                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
323                                             
324             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
325             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
326             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
327             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
328             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
329             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
330             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
331             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
332             j_coord_offsetA  = DIM*jnrA;
333             j_coord_offsetB  = DIM*jnrB;
334             j_coord_offsetC  = DIM*jnrC;
335             j_coord_offsetD  = DIM*jnrD;
336             j_coord_offsetE  = DIM*jnrE;
337             j_coord_offsetF  = DIM*jnrF;
338             j_coord_offsetG  = DIM*jnrG;
339             j_coord_offsetH  = DIM*jnrH;
340
341             /* load j atom coordinates */
342             gmx_mm256_load_1rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
343                                                  x+j_coord_offsetC,x+j_coord_offsetD,
344                                                  x+j_coord_offsetE,x+j_coord_offsetF,
345                                                  x+j_coord_offsetG,x+j_coord_offsetH,
346                                                  &jx0,&jy0,&jz0);
347
348             /* Calculate displacement vector */
349             dx00             = _mm256_sub_ps(ix0,jx0);
350             dy00             = _mm256_sub_ps(iy0,jy0);
351             dz00             = _mm256_sub_ps(iz0,jz0);
352
353             /* Calculate squared distance and things based on it */
354             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
355
356             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
357
358             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
359
360             /* Load parameters for j particles */
361             vdwjidx0A        = 2*vdwtype[jnrA+0];
362             vdwjidx0B        = 2*vdwtype[jnrB+0];
363             vdwjidx0C        = 2*vdwtype[jnrC+0];
364             vdwjidx0D        = 2*vdwtype[jnrD+0];
365             vdwjidx0E        = 2*vdwtype[jnrE+0];
366             vdwjidx0F        = 2*vdwtype[jnrF+0];
367             vdwjidx0G        = 2*vdwtype[jnrG+0];
368             vdwjidx0H        = 2*vdwtype[jnrH+0];
369
370             /**************************
371              * CALCULATE INTERACTIONS *
372              **************************/
373
374             if (gmx_mm256_any_lt(rsq00,rcutoff2))
375             {
376
377             r00              = _mm256_mul_ps(rsq00,rinv00);
378             r00              = _mm256_andnot_ps(dummy_mask,r00);
379
380             /* Compute parameters for interactions between i and j atoms */
381             gmx_mm256_load_8pair_swizzle_ps(vdwioffsetptr0+vdwjidx0A,
382                                             vdwioffsetptr0+vdwjidx0B,
383                                             vdwioffsetptr0+vdwjidx0C,
384                                             vdwioffsetptr0+vdwjidx0D,
385                                             vdwioffsetptr0+vdwjidx0E,
386                                             vdwioffsetptr0+vdwjidx0F,
387                                             vdwioffsetptr0+vdwjidx0G,
388                                             vdwioffsetptr0+vdwjidx0H,
389                                             &c6_00,&c12_00);
390
391             /* LENNARD-JONES DISPERSION/REPULSION */
392
393             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
394             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
395             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
396             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
397             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
398
399             d                = _mm256_sub_ps(r00,rswitch);
400             d                = _mm256_max_ps(d,_mm256_setzero_ps());
401             d2               = _mm256_mul_ps(d,d);
402             sw               = _mm256_add_ps(one,_mm256_mul_ps(d2,_mm256_mul_ps(d,_mm256_add_ps(swV3,_mm256_mul_ps(d,_mm256_add_ps(swV4,_mm256_mul_ps(d,swV5)))))));
403
404             dsw              = _mm256_mul_ps(d2,_mm256_add_ps(swF2,_mm256_mul_ps(d,_mm256_add_ps(swF3,_mm256_mul_ps(d,swF4)))));
405
406             /* Evaluate switch function */
407             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
408             fvdw             = _mm256_sub_ps( _mm256_mul_ps(fvdw,sw) , _mm256_mul_ps(rinv00,_mm256_mul_ps(vvdw,dsw)) );
409             vvdw             = _mm256_mul_ps(vvdw,sw);
410             cutoff_mask      = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
411
412             /* Update potential sum for this i atom from the interaction with this j atom. */
413             vvdw             = _mm256_and_ps(vvdw,cutoff_mask);
414             vvdw             = _mm256_andnot_ps(dummy_mask,vvdw);
415             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
416
417             fscal            = fvdw;
418
419             fscal            = _mm256_and_ps(fscal,cutoff_mask);
420
421             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
422
423             /* Calculate temporary vectorial force */
424             tx               = _mm256_mul_ps(fscal,dx00);
425             ty               = _mm256_mul_ps(fscal,dy00);
426             tz               = _mm256_mul_ps(fscal,dz00);
427
428             /* Update vectorial force */
429             fix0             = _mm256_add_ps(fix0,tx);
430             fiy0             = _mm256_add_ps(fiy0,ty);
431             fiz0             = _mm256_add_ps(fiz0,tz);
432
433             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
434             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
435             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
436             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
437             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
438             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
439             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
440             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
441             gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,tx,ty,tz);
442
443             }
444
445             /* Inner loop uses 60 flops */
446         }
447
448         /* End of innermost loop */
449
450         gmx_mm256_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
451                                                  f+i_coord_offset,fshift+i_shift_offset);
452
453         ggid                        = gid[iidx];
454         /* Update potential energies */
455         gmx_mm256_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
456
457         /* Increment number of inner iterations */
458         inneriter                  += j_index_end - j_index_start;
459
460         /* Outer loop uses 7 flops */
461     }
462
463     /* Increment number of outer iterations */
464     outeriter        += nri;
465
466     /* Update outer/inner flops */
467
468     inc_nrnb(nrnb,eNR_NBKERNEL_VDW_VF,outeriter*7 + inneriter*60);
469 }
470 /*
471  * Gromacs nonbonded kernel:   nb_kernel_ElecNone_VdwLJSw_GeomP1P1_F_avx_256_single
472  * Electrostatics interaction: None
473  * VdW interaction:            LennardJones
474  * Geometry:                   Particle-Particle
475  * Calculate force/pot:        Force
476  */
477 void
478 nb_kernel_ElecNone_VdwLJSw_GeomP1P1_F_avx_256_single
479                     (t_nblist                    * gmx_restrict       nlist,
480                      rvec                        * gmx_restrict          xx,
481                      rvec                        * gmx_restrict          ff,
482                      t_forcerec                  * gmx_restrict          fr,
483                      t_mdatoms                   * gmx_restrict     mdatoms,
484                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
485                      t_nrnb                      * gmx_restrict        nrnb)
486 {
487     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
488      * just 0 for non-waters.
489      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
490      * jnr indices corresponding to data put in the four positions in the SIMD register.
491      */
492     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
493     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
494     int              jnrA,jnrB,jnrC,jnrD;
495     int              jnrE,jnrF,jnrG,jnrH;
496     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
497     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
498     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
499     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
500     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
501     real             rcutoff_scalar;
502     real             *shiftvec,*fshift,*x,*f;
503     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
504     real             scratch[4*DIM];
505     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
506     real *           vdwioffsetptr0;
507     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
508     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
509     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
510     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
511     int              nvdwtype;
512     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
513     int              *vdwtype;
514     real             *vdwparam;
515     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
516     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
517     __m256           rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
518     real             rswitch_scalar,d_scalar;
519     __m256           dummy_mask,cutoff_mask;
520     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
521     __m256           one     = _mm256_set1_ps(1.0);
522     __m256           two     = _mm256_set1_ps(2.0);
523     x                = xx[0];
524     f                = ff[0];
525
526     nri              = nlist->nri;
527     iinr             = nlist->iinr;
528     jindex           = nlist->jindex;
529     jjnr             = nlist->jjnr;
530     shiftidx         = nlist->shift;
531     gid              = nlist->gid;
532     shiftvec         = fr->shift_vec[0];
533     fshift           = fr->fshift[0];
534     nvdwtype         = fr->ntype;
535     vdwparam         = fr->nbfp;
536     vdwtype          = mdatoms->typeA;
537
538     rcutoff_scalar   = fr->rvdw;
539     rcutoff          = _mm256_set1_ps(rcutoff_scalar);
540     rcutoff2         = _mm256_mul_ps(rcutoff,rcutoff);
541
542     rswitch_scalar   = fr->rvdw_switch;
543     rswitch          = _mm256_set1_ps(rswitch_scalar);
544     /* Setup switch parameters */
545     d_scalar         = rcutoff_scalar-rswitch_scalar;
546     d                = _mm256_set1_ps(d_scalar);
547     swV3             = _mm256_set1_ps(-10.0/(d_scalar*d_scalar*d_scalar));
548     swV4             = _mm256_set1_ps( 15.0/(d_scalar*d_scalar*d_scalar*d_scalar));
549     swV5             = _mm256_set1_ps( -6.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
550     swF2             = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar));
551     swF3             = _mm256_set1_ps( 60.0/(d_scalar*d_scalar*d_scalar*d_scalar));
552     swF4             = _mm256_set1_ps(-30.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
553
554     /* Avoid stupid compiler warnings */
555     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
556     j_coord_offsetA = 0;
557     j_coord_offsetB = 0;
558     j_coord_offsetC = 0;
559     j_coord_offsetD = 0;
560     j_coord_offsetE = 0;
561     j_coord_offsetF = 0;
562     j_coord_offsetG = 0;
563     j_coord_offsetH = 0;
564
565     outeriter        = 0;
566     inneriter        = 0;
567
568     for(iidx=0;iidx<4*DIM;iidx++)
569     {
570         scratch[iidx] = 0.0;
571     }
572
573     /* Start outer loop over neighborlists */
574     for(iidx=0; iidx<nri; iidx++)
575     {
576         /* Load shift vector for this list */
577         i_shift_offset   = DIM*shiftidx[iidx];
578
579         /* Load limits for loop over neighbors */
580         j_index_start    = jindex[iidx];
581         j_index_end      = jindex[iidx+1];
582
583         /* Get outer coordinate index */
584         inr              = iinr[iidx];
585         i_coord_offset   = DIM*inr;
586
587         /* Load i particle coords and add shift vector */
588         gmx_mm256_load_shift_and_1rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
589
590         fix0             = _mm256_setzero_ps();
591         fiy0             = _mm256_setzero_ps();
592         fiz0             = _mm256_setzero_ps();
593
594         /* Load parameters for i particles */
595         vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
596
597         /* Start inner kernel loop */
598         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
599         {
600
601             /* Get j neighbor index, and coordinate index */
602             jnrA             = jjnr[jidx];
603             jnrB             = jjnr[jidx+1];
604             jnrC             = jjnr[jidx+2];
605             jnrD             = jjnr[jidx+3];
606             jnrE             = jjnr[jidx+4];
607             jnrF             = jjnr[jidx+5];
608             jnrG             = jjnr[jidx+6];
609             jnrH             = jjnr[jidx+7];
610             j_coord_offsetA  = DIM*jnrA;
611             j_coord_offsetB  = DIM*jnrB;
612             j_coord_offsetC  = DIM*jnrC;
613             j_coord_offsetD  = DIM*jnrD;
614             j_coord_offsetE  = DIM*jnrE;
615             j_coord_offsetF  = DIM*jnrF;
616             j_coord_offsetG  = DIM*jnrG;
617             j_coord_offsetH  = DIM*jnrH;
618
619             /* load j atom coordinates */
620             gmx_mm256_load_1rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
621                                                  x+j_coord_offsetC,x+j_coord_offsetD,
622                                                  x+j_coord_offsetE,x+j_coord_offsetF,
623                                                  x+j_coord_offsetG,x+j_coord_offsetH,
624                                                  &jx0,&jy0,&jz0);
625
626             /* Calculate displacement vector */
627             dx00             = _mm256_sub_ps(ix0,jx0);
628             dy00             = _mm256_sub_ps(iy0,jy0);
629             dz00             = _mm256_sub_ps(iz0,jz0);
630
631             /* Calculate squared distance and things based on it */
632             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
633
634             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
635
636             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
637
638             /* Load parameters for j particles */
639             vdwjidx0A        = 2*vdwtype[jnrA+0];
640             vdwjidx0B        = 2*vdwtype[jnrB+0];
641             vdwjidx0C        = 2*vdwtype[jnrC+0];
642             vdwjidx0D        = 2*vdwtype[jnrD+0];
643             vdwjidx0E        = 2*vdwtype[jnrE+0];
644             vdwjidx0F        = 2*vdwtype[jnrF+0];
645             vdwjidx0G        = 2*vdwtype[jnrG+0];
646             vdwjidx0H        = 2*vdwtype[jnrH+0];
647
648             /**************************
649              * CALCULATE INTERACTIONS *
650              **************************/
651
652             if (gmx_mm256_any_lt(rsq00,rcutoff2))
653             {
654
655             r00              = _mm256_mul_ps(rsq00,rinv00);
656
657             /* Compute parameters for interactions between i and j atoms */
658             gmx_mm256_load_8pair_swizzle_ps(vdwioffsetptr0+vdwjidx0A,
659                                             vdwioffsetptr0+vdwjidx0B,
660                                             vdwioffsetptr0+vdwjidx0C,
661                                             vdwioffsetptr0+vdwjidx0D,
662                                             vdwioffsetptr0+vdwjidx0E,
663                                             vdwioffsetptr0+vdwjidx0F,
664                                             vdwioffsetptr0+vdwjidx0G,
665                                             vdwioffsetptr0+vdwjidx0H,
666                                             &c6_00,&c12_00);
667
668             /* LENNARD-JONES DISPERSION/REPULSION */
669
670             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
671             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
672             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
673             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
674             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
675
676             d                = _mm256_sub_ps(r00,rswitch);
677             d                = _mm256_max_ps(d,_mm256_setzero_ps());
678             d2               = _mm256_mul_ps(d,d);
679             sw               = _mm256_add_ps(one,_mm256_mul_ps(d2,_mm256_mul_ps(d,_mm256_add_ps(swV3,_mm256_mul_ps(d,_mm256_add_ps(swV4,_mm256_mul_ps(d,swV5)))))));
680
681             dsw              = _mm256_mul_ps(d2,_mm256_add_ps(swF2,_mm256_mul_ps(d,_mm256_add_ps(swF3,_mm256_mul_ps(d,swF4)))));
682
683             /* Evaluate switch function */
684             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
685             fvdw             = _mm256_sub_ps( _mm256_mul_ps(fvdw,sw) , _mm256_mul_ps(rinv00,_mm256_mul_ps(vvdw,dsw)) );
686             cutoff_mask      = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
687
688             fscal            = fvdw;
689
690             fscal            = _mm256_and_ps(fscal,cutoff_mask);
691
692             /* Calculate temporary vectorial force */
693             tx               = _mm256_mul_ps(fscal,dx00);
694             ty               = _mm256_mul_ps(fscal,dy00);
695             tz               = _mm256_mul_ps(fscal,dz00);
696
697             /* Update vectorial force */
698             fix0             = _mm256_add_ps(fix0,tx);
699             fiy0             = _mm256_add_ps(fiy0,ty);
700             fiz0             = _mm256_add_ps(fiz0,tz);
701
702             fjptrA             = f+j_coord_offsetA;
703             fjptrB             = f+j_coord_offsetB;
704             fjptrC             = f+j_coord_offsetC;
705             fjptrD             = f+j_coord_offsetD;
706             fjptrE             = f+j_coord_offsetE;
707             fjptrF             = f+j_coord_offsetF;
708             fjptrG             = f+j_coord_offsetG;
709             fjptrH             = f+j_coord_offsetH;
710             gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,tx,ty,tz);
711
712             }
713
714             /* Inner loop uses 56 flops */
715         }
716
717         if(jidx<j_index_end)
718         {
719
720             /* Get j neighbor index, and coordinate index */
721             jnrlistA         = jjnr[jidx];
722             jnrlistB         = jjnr[jidx+1];
723             jnrlistC         = jjnr[jidx+2];
724             jnrlistD         = jjnr[jidx+3];
725             jnrlistE         = jjnr[jidx+4];
726             jnrlistF         = jjnr[jidx+5];
727             jnrlistG         = jjnr[jidx+6];
728             jnrlistH         = jjnr[jidx+7];
729             /* Sign of each element will be negative for non-real atoms.
730              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
731              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
732              */
733             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
734                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
735                                             
736             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
737             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
738             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
739             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
740             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
741             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
742             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
743             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
744             j_coord_offsetA  = DIM*jnrA;
745             j_coord_offsetB  = DIM*jnrB;
746             j_coord_offsetC  = DIM*jnrC;
747             j_coord_offsetD  = DIM*jnrD;
748             j_coord_offsetE  = DIM*jnrE;
749             j_coord_offsetF  = DIM*jnrF;
750             j_coord_offsetG  = DIM*jnrG;
751             j_coord_offsetH  = DIM*jnrH;
752
753             /* load j atom coordinates */
754             gmx_mm256_load_1rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
755                                                  x+j_coord_offsetC,x+j_coord_offsetD,
756                                                  x+j_coord_offsetE,x+j_coord_offsetF,
757                                                  x+j_coord_offsetG,x+j_coord_offsetH,
758                                                  &jx0,&jy0,&jz0);
759
760             /* Calculate displacement vector */
761             dx00             = _mm256_sub_ps(ix0,jx0);
762             dy00             = _mm256_sub_ps(iy0,jy0);
763             dz00             = _mm256_sub_ps(iz0,jz0);
764
765             /* Calculate squared distance and things based on it */
766             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
767
768             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
769
770             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
771
772             /* Load parameters for j particles */
773             vdwjidx0A        = 2*vdwtype[jnrA+0];
774             vdwjidx0B        = 2*vdwtype[jnrB+0];
775             vdwjidx0C        = 2*vdwtype[jnrC+0];
776             vdwjidx0D        = 2*vdwtype[jnrD+0];
777             vdwjidx0E        = 2*vdwtype[jnrE+0];
778             vdwjidx0F        = 2*vdwtype[jnrF+0];
779             vdwjidx0G        = 2*vdwtype[jnrG+0];
780             vdwjidx0H        = 2*vdwtype[jnrH+0];
781
782             /**************************
783              * CALCULATE INTERACTIONS *
784              **************************/
785
786             if (gmx_mm256_any_lt(rsq00,rcutoff2))
787             {
788
789             r00              = _mm256_mul_ps(rsq00,rinv00);
790             r00              = _mm256_andnot_ps(dummy_mask,r00);
791
792             /* Compute parameters for interactions between i and j atoms */
793             gmx_mm256_load_8pair_swizzle_ps(vdwioffsetptr0+vdwjidx0A,
794                                             vdwioffsetptr0+vdwjidx0B,
795                                             vdwioffsetptr0+vdwjidx0C,
796                                             vdwioffsetptr0+vdwjidx0D,
797                                             vdwioffsetptr0+vdwjidx0E,
798                                             vdwioffsetptr0+vdwjidx0F,
799                                             vdwioffsetptr0+vdwjidx0G,
800                                             vdwioffsetptr0+vdwjidx0H,
801                                             &c6_00,&c12_00);
802
803             /* LENNARD-JONES DISPERSION/REPULSION */
804
805             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
806             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
807             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
808             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
809             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
810
811             d                = _mm256_sub_ps(r00,rswitch);
812             d                = _mm256_max_ps(d,_mm256_setzero_ps());
813             d2               = _mm256_mul_ps(d,d);
814             sw               = _mm256_add_ps(one,_mm256_mul_ps(d2,_mm256_mul_ps(d,_mm256_add_ps(swV3,_mm256_mul_ps(d,_mm256_add_ps(swV4,_mm256_mul_ps(d,swV5)))))));
815
816             dsw              = _mm256_mul_ps(d2,_mm256_add_ps(swF2,_mm256_mul_ps(d,_mm256_add_ps(swF3,_mm256_mul_ps(d,swF4)))));
817
818             /* Evaluate switch function */
819             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
820             fvdw             = _mm256_sub_ps( _mm256_mul_ps(fvdw,sw) , _mm256_mul_ps(rinv00,_mm256_mul_ps(vvdw,dsw)) );
821             cutoff_mask      = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
822
823             fscal            = fvdw;
824
825             fscal            = _mm256_and_ps(fscal,cutoff_mask);
826
827             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
828
829             /* Calculate temporary vectorial force */
830             tx               = _mm256_mul_ps(fscal,dx00);
831             ty               = _mm256_mul_ps(fscal,dy00);
832             tz               = _mm256_mul_ps(fscal,dz00);
833
834             /* Update vectorial force */
835             fix0             = _mm256_add_ps(fix0,tx);
836             fiy0             = _mm256_add_ps(fiy0,ty);
837             fiz0             = _mm256_add_ps(fiz0,tz);
838
839             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
840             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
841             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
842             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
843             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
844             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
845             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
846             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
847             gmx_mm256_decrement_1rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,tx,ty,tz);
848
849             }
850
851             /* Inner loop uses 57 flops */
852         }
853
854         /* End of innermost loop */
855
856         gmx_mm256_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
857                                                  f+i_coord_offset,fshift+i_shift_offset);
858
859         /* Increment number of inner iterations */
860         inneriter                  += j_index_end - j_index_start;
861
862         /* Outer loop uses 6 flops */
863     }
864
865     /* Increment number of outer iterations */
866     outeriter        += nri;
867
868     /* Update outer/inner flops */
869
870     inc_nrnb(nrnb,eNR_NBKERNEL_VDW_F,outeriter*6 + inneriter*57);
871 }