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36 * Note: this file was generated by the GROMACS avx_256_single kernel generator.
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
47 #include "gromacs/simd/math_x86_avx_256_single.h"
48 #include "kernelutil_x86_avx_256_single.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwNone_GeomW3W3_VF_avx_256_single
52 * Electrostatics interaction: Ewald
53 * VdW interaction: None
54 * Geometry: Water3-Water3
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecEwSh_VdwNone_GeomW3W3_VF_avx_256_single
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int jnrA,jnrB,jnrC,jnrD;
75 int jnrE,jnrF,jnrG,jnrH;
76 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
77 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
78 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
79 int j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
80 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
82 real *shiftvec,*fshift,*x,*f;
83 real *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
85 __m256 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86 real * vdwioffsetptr0;
87 __m256 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
88 real * vdwioffsetptr1;
89 __m256 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
90 real * vdwioffsetptr2;
91 __m256 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
92 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
93 __m256 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
94 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
95 __m256 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
96 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
97 __m256 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
98 __m256 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
99 __m256 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
100 __m256 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
101 __m256 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
102 __m256 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
103 __m256 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
104 __m256 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
105 __m256 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
106 __m256 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
107 __m256 velec,felec,velecsum,facel,crf,krf,krf2;
110 __m128i ewitab_lo,ewitab_hi;
111 __m256 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
112 __m256 beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
114 __m256 dummy_mask,cutoff_mask;
115 __m256 signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
116 __m256 one = _mm256_set1_ps(1.0);
117 __m256 two = _mm256_set1_ps(2.0);
123 jindex = nlist->jindex;
125 shiftidx = nlist->shift;
127 shiftvec = fr->shift_vec[0];
128 fshift = fr->fshift[0];
129 facel = _mm256_set1_ps(fr->epsfac);
130 charge = mdatoms->chargeA;
132 sh_ewald = _mm256_set1_ps(fr->ic->sh_ewald);
133 beta = _mm256_set1_ps(fr->ic->ewaldcoeff_q);
134 beta2 = _mm256_mul_ps(beta,beta);
135 beta3 = _mm256_mul_ps(beta,beta2);
137 ewtab = fr->ic->tabq_coul_FDV0;
138 ewtabscale = _mm256_set1_ps(fr->ic->tabq_scale);
139 ewtabhalfspace = _mm256_set1_ps(0.5/fr->ic->tabq_scale);
141 /* Setup water-specific parameters */
142 inr = nlist->iinr[0];
143 iq0 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
144 iq1 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
145 iq2 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
147 jq0 = _mm256_set1_ps(charge[inr+0]);
148 jq1 = _mm256_set1_ps(charge[inr+1]);
149 jq2 = _mm256_set1_ps(charge[inr+2]);
150 qq00 = _mm256_mul_ps(iq0,jq0);
151 qq01 = _mm256_mul_ps(iq0,jq1);
152 qq02 = _mm256_mul_ps(iq0,jq2);
153 qq10 = _mm256_mul_ps(iq1,jq0);
154 qq11 = _mm256_mul_ps(iq1,jq1);
155 qq12 = _mm256_mul_ps(iq1,jq2);
156 qq20 = _mm256_mul_ps(iq2,jq0);
157 qq21 = _mm256_mul_ps(iq2,jq1);
158 qq22 = _mm256_mul_ps(iq2,jq2);
160 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
161 rcutoff_scalar = fr->rcoulomb;
162 rcutoff = _mm256_set1_ps(rcutoff_scalar);
163 rcutoff2 = _mm256_mul_ps(rcutoff,rcutoff);
165 /* Avoid stupid compiler warnings */
166 jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
179 for(iidx=0;iidx<4*DIM;iidx++)
184 /* Start outer loop over neighborlists */
185 for(iidx=0; iidx<nri; iidx++)
187 /* Load shift vector for this list */
188 i_shift_offset = DIM*shiftidx[iidx];
190 /* Load limits for loop over neighbors */
191 j_index_start = jindex[iidx];
192 j_index_end = jindex[iidx+1];
194 /* Get outer coordinate index */
196 i_coord_offset = DIM*inr;
198 /* Load i particle coords and add shift vector */
199 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
200 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
202 fix0 = _mm256_setzero_ps();
203 fiy0 = _mm256_setzero_ps();
204 fiz0 = _mm256_setzero_ps();
205 fix1 = _mm256_setzero_ps();
206 fiy1 = _mm256_setzero_ps();
207 fiz1 = _mm256_setzero_ps();
208 fix2 = _mm256_setzero_ps();
209 fiy2 = _mm256_setzero_ps();
210 fiz2 = _mm256_setzero_ps();
212 /* Reset potential sums */
213 velecsum = _mm256_setzero_ps();
215 /* Start inner kernel loop */
216 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
219 /* Get j neighbor index, and coordinate index */
228 j_coord_offsetA = DIM*jnrA;
229 j_coord_offsetB = DIM*jnrB;
230 j_coord_offsetC = DIM*jnrC;
231 j_coord_offsetD = DIM*jnrD;
232 j_coord_offsetE = DIM*jnrE;
233 j_coord_offsetF = DIM*jnrF;
234 j_coord_offsetG = DIM*jnrG;
235 j_coord_offsetH = DIM*jnrH;
237 /* load j atom coordinates */
238 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
239 x+j_coord_offsetC,x+j_coord_offsetD,
240 x+j_coord_offsetE,x+j_coord_offsetF,
241 x+j_coord_offsetG,x+j_coord_offsetH,
242 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
244 /* Calculate displacement vector */
245 dx00 = _mm256_sub_ps(ix0,jx0);
246 dy00 = _mm256_sub_ps(iy0,jy0);
247 dz00 = _mm256_sub_ps(iz0,jz0);
248 dx01 = _mm256_sub_ps(ix0,jx1);
249 dy01 = _mm256_sub_ps(iy0,jy1);
250 dz01 = _mm256_sub_ps(iz0,jz1);
251 dx02 = _mm256_sub_ps(ix0,jx2);
252 dy02 = _mm256_sub_ps(iy0,jy2);
253 dz02 = _mm256_sub_ps(iz0,jz2);
254 dx10 = _mm256_sub_ps(ix1,jx0);
255 dy10 = _mm256_sub_ps(iy1,jy0);
256 dz10 = _mm256_sub_ps(iz1,jz0);
257 dx11 = _mm256_sub_ps(ix1,jx1);
258 dy11 = _mm256_sub_ps(iy1,jy1);
259 dz11 = _mm256_sub_ps(iz1,jz1);
260 dx12 = _mm256_sub_ps(ix1,jx2);
261 dy12 = _mm256_sub_ps(iy1,jy2);
262 dz12 = _mm256_sub_ps(iz1,jz2);
263 dx20 = _mm256_sub_ps(ix2,jx0);
264 dy20 = _mm256_sub_ps(iy2,jy0);
265 dz20 = _mm256_sub_ps(iz2,jz0);
266 dx21 = _mm256_sub_ps(ix2,jx1);
267 dy21 = _mm256_sub_ps(iy2,jy1);
268 dz21 = _mm256_sub_ps(iz2,jz1);
269 dx22 = _mm256_sub_ps(ix2,jx2);
270 dy22 = _mm256_sub_ps(iy2,jy2);
271 dz22 = _mm256_sub_ps(iz2,jz2);
273 /* Calculate squared distance and things based on it */
274 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
275 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
276 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
277 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
278 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
279 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
280 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
281 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
282 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
284 rinv00 = gmx_mm256_invsqrt_ps(rsq00);
285 rinv01 = gmx_mm256_invsqrt_ps(rsq01);
286 rinv02 = gmx_mm256_invsqrt_ps(rsq02);
287 rinv10 = gmx_mm256_invsqrt_ps(rsq10);
288 rinv11 = gmx_mm256_invsqrt_ps(rsq11);
289 rinv12 = gmx_mm256_invsqrt_ps(rsq12);
290 rinv20 = gmx_mm256_invsqrt_ps(rsq20);
291 rinv21 = gmx_mm256_invsqrt_ps(rsq21);
292 rinv22 = gmx_mm256_invsqrt_ps(rsq22);
294 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
295 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
296 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
297 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
298 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
299 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
300 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
301 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
302 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
304 fjx0 = _mm256_setzero_ps();
305 fjy0 = _mm256_setzero_ps();
306 fjz0 = _mm256_setzero_ps();
307 fjx1 = _mm256_setzero_ps();
308 fjy1 = _mm256_setzero_ps();
309 fjz1 = _mm256_setzero_ps();
310 fjx2 = _mm256_setzero_ps();
311 fjy2 = _mm256_setzero_ps();
312 fjz2 = _mm256_setzero_ps();
314 /**************************
315 * CALCULATE INTERACTIONS *
316 **************************/
318 if (gmx_mm256_any_lt(rsq00,rcutoff2))
321 r00 = _mm256_mul_ps(rsq00,rinv00);
323 /* EWALD ELECTROSTATICS */
325 /* Analytical PME correction */
326 zeta2 = _mm256_mul_ps(beta2,rsq00);
327 rinv3 = _mm256_mul_ps(rinvsq00,rinv00);
328 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
329 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
330 felec = _mm256_mul_ps(qq00,felec);
331 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
332 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
333 velec = _mm256_sub_ps(_mm256_sub_ps(rinv00,sh_ewald),pmecorrV);
334 velec = _mm256_mul_ps(qq00,velec);
336 cutoff_mask = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
338 /* Update potential sum for this i atom from the interaction with this j atom. */
339 velec = _mm256_and_ps(velec,cutoff_mask);
340 velecsum = _mm256_add_ps(velecsum,velec);
344 fscal = _mm256_and_ps(fscal,cutoff_mask);
346 /* Calculate temporary vectorial force */
347 tx = _mm256_mul_ps(fscal,dx00);
348 ty = _mm256_mul_ps(fscal,dy00);
349 tz = _mm256_mul_ps(fscal,dz00);
351 /* Update vectorial force */
352 fix0 = _mm256_add_ps(fix0,tx);
353 fiy0 = _mm256_add_ps(fiy0,ty);
354 fiz0 = _mm256_add_ps(fiz0,tz);
356 fjx0 = _mm256_add_ps(fjx0,tx);
357 fjy0 = _mm256_add_ps(fjy0,ty);
358 fjz0 = _mm256_add_ps(fjz0,tz);
362 /**************************
363 * CALCULATE INTERACTIONS *
364 **************************/
366 if (gmx_mm256_any_lt(rsq01,rcutoff2))
369 r01 = _mm256_mul_ps(rsq01,rinv01);
371 /* EWALD ELECTROSTATICS */
373 /* Analytical PME correction */
374 zeta2 = _mm256_mul_ps(beta2,rsq01);
375 rinv3 = _mm256_mul_ps(rinvsq01,rinv01);
376 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
377 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
378 felec = _mm256_mul_ps(qq01,felec);
379 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
380 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
381 velec = _mm256_sub_ps(_mm256_sub_ps(rinv01,sh_ewald),pmecorrV);
382 velec = _mm256_mul_ps(qq01,velec);
384 cutoff_mask = _mm256_cmp_ps(rsq01,rcutoff2,_CMP_LT_OQ);
386 /* Update potential sum for this i atom from the interaction with this j atom. */
387 velec = _mm256_and_ps(velec,cutoff_mask);
388 velecsum = _mm256_add_ps(velecsum,velec);
392 fscal = _mm256_and_ps(fscal,cutoff_mask);
394 /* Calculate temporary vectorial force */
395 tx = _mm256_mul_ps(fscal,dx01);
396 ty = _mm256_mul_ps(fscal,dy01);
397 tz = _mm256_mul_ps(fscal,dz01);
399 /* Update vectorial force */
400 fix0 = _mm256_add_ps(fix0,tx);
401 fiy0 = _mm256_add_ps(fiy0,ty);
402 fiz0 = _mm256_add_ps(fiz0,tz);
404 fjx1 = _mm256_add_ps(fjx1,tx);
405 fjy1 = _mm256_add_ps(fjy1,ty);
406 fjz1 = _mm256_add_ps(fjz1,tz);
410 /**************************
411 * CALCULATE INTERACTIONS *
412 **************************/
414 if (gmx_mm256_any_lt(rsq02,rcutoff2))
417 r02 = _mm256_mul_ps(rsq02,rinv02);
419 /* EWALD ELECTROSTATICS */
421 /* Analytical PME correction */
422 zeta2 = _mm256_mul_ps(beta2,rsq02);
423 rinv3 = _mm256_mul_ps(rinvsq02,rinv02);
424 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
425 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
426 felec = _mm256_mul_ps(qq02,felec);
427 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
428 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
429 velec = _mm256_sub_ps(_mm256_sub_ps(rinv02,sh_ewald),pmecorrV);
430 velec = _mm256_mul_ps(qq02,velec);
432 cutoff_mask = _mm256_cmp_ps(rsq02,rcutoff2,_CMP_LT_OQ);
434 /* Update potential sum for this i atom from the interaction with this j atom. */
435 velec = _mm256_and_ps(velec,cutoff_mask);
436 velecsum = _mm256_add_ps(velecsum,velec);
440 fscal = _mm256_and_ps(fscal,cutoff_mask);
442 /* Calculate temporary vectorial force */
443 tx = _mm256_mul_ps(fscal,dx02);
444 ty = _mm256_mul_ps(fscal,dy02);
445 tz = _mm256_mul_ps(fscal,dz02);
447 /* Update vectorial force */
448 fix0 = _mm256_add_ps(fix0,tx);
449 fiy0 = _mm256_add_ps(fiy0,ty);
450 fiz0 = _mm256_add_ps(fiz0,tz);
452 fjx2 = _mm256_add_ps(fjx2,tx);
453 fjy2 = _mm256_add_ps(fjy2,ty);
454 fjz2 = _mm256_add_ps(fjz2,tz);
458 /**************************
459 * CALCULATE INTERACTIONS *
460 **************************/
462 if (gmx_mm256_any_lt(rsq10,rcutoff2))
465 r10 = _mm256_mul_ps(rsq10,rinv10);
467 /* EWALD ELECTROSTATICS */
469 /* Analytical PME correction */
470 zeta2 = _mm256_mul_ps(beta2,rsq10);
471 rinv3 = _mm256_mul_ps(rinvsq10,rinv10);
472 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
473 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
474 felec = _mm256_mul_ps(qq10,felec);
475 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
476 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
477 velec = _mm256_sub_ps(_mm256_sub_ps(rinv10,sh_ewald),pmecorrV);
478 velec = _mm256_mul_ps(qq10,velec);
480 cutoff_mask = _mm256_cmp_ps(rsq10,rcutoff2,_CMP_LT_OQ);
482 /* Update potential sum for this i atom from the interaction with this j atom. */
483 velec = _mm256_and_ps(velec,cutoff_mask);
484 velecsum = _mm256_add_ps(velecsum,velec);
488 fscal = _mm256_and_ps(fscal,cutoff_mask);
490 /* Calculate temporary vectorial force */
491 tx = _mm256_mul_ps(fscal,dx10);
492 ty = _mm256_mul_ps(fscal,dy10);
493 tz = _mm256_mul_ps(fscal,dz10);
495 /* Update vectorial force */
496 fix1 = _mm256_add_ps(fix1,tx);
497 fiy1 = _mm256_add_ps(fiy1,ty);
498 fiz1 = _mm256_add_ps(fiz1,tz);
500 fjx0 = _mm256_add_ps(fjx0,tx);
501 fjy0 = _mm256_add_ps(fjy0,ty);
502 fjz0 = _mm256_add_ps(fjz0,tz);
506 /**************************
507 * CALCULATE INTERACTIONS *
508 **************************/
510 if (gmx_mm256_any_lt(rsq11,rcutoff2))
513 r11 = _mm256_mul_ps(rsq11,rinv11);
515 /* EWALD ELECTROSTATICS */
517 /* Analytical PME correction */
518 zeta2 = _mm256_mul_ps(beta2,rsq11);
519 rinv3 = _mm256_mul_ps(rinvsq11,rinv11);
520 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
521 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
522 felec = _mm256_mul_ps(qq11,felec);
523 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
524 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
525 velec = _mm256_sub_ps(_mm256_sub_ps(rinv11,sh_ewald),pmecorrV);
526 velec = _mm256_mul_ps(qq11,velec);
528 cutoff_mask = _mm256_cmp_ps(rsq11,rcutoff2,_CMP_LT_OQ);
530 /* Update potential sum for this i atom from the interaction with this j atom. */
531 velec = _mm256_and_ps(velec,cutoff_mask);
532 velecsum = _mm256_add_ps(velecsum,velec);
536 fscal = _mm256_and_ps(fscal,cutoff_mask);
538 /* Calculate temporary vectorial force */
539 tx = _mm256_mul_ps(fscal,dx11);
540 ty = _mm256_mul_ps(fscal,dy11);
541 tz = _mm256_mul_ps(fscal,dz11);
543 /* Update vectorial force */
544 fix1 = _mm256_add_ps(fix1,tx);
545 fiy1 = _mm256_add_ps(fiy1,ty);
546 fiz1 = _mm256_add_ps(fiz1,tz);
548 fjx1 = _mm256_add_ps(fjx1,tx);
549 fjy1 = _mm256_add_ps(fjy1,ty);
550 fjz1 = _mm256_add_ps(fjz1,tz);
554 /**************************
555 * CALCULATE INTERACTIONS *
556 **************************/
558 if (gmx_mm256_any_lt(rsq12,rcutoff2))
561 r12 = _mm256_mul_ps(rsq12,rinv12);
563 /* EWALD ELECTROSTATICS */
565 /* Analytical PME correction */
566 zeta2 = _mm256_mul_ps(beta2,rsq12);
567 rinv3 = _mm256_mul_ps(rinvsq12,rinv12);
568 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
569 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
570 felec = _mm256_mul_ps(qq12,felec);
571 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
572 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
573 velec = _mm256_sub_ps(_mm256_sub_ps(rinv12,sh_ewald),pmecorrV);
574 velec = _mm256_mul_ps(qq12,velec);
576 cutoff_mask = _mm256_cmp_ps(rsq12,rcutoff2,_CMP_LT_OQ);
578 /* Update potential sum for this i atom from the interaction with this j atom. */
579 velec = _mm256_and_ps(velec,cutoff_mask);
580 velecsum = _mm256_add_ps(velecsum,velec);
584 fscal = _mm256_and_ps(fscal,cutoff_mask);
586 /* Calculate temporary vectorial force */
587 tx = _mm256_mul_ps(fscal,dx12);
588 ty = _mm256_mul_ps(fscal,dy12);
589 tz = _mm256_mul_ps(fscal,dz12);
591 /* Update vectorial force */
592 fix1 = _mm256_add_ps(fix1,tx);
593 fiy1 = _mm256_add_ps(fiy1,ty);
594 fiz1 = _mm256_add_ps(fiz1,tz);
596 fjx2 = _mm256_add_ps(fjx2,tx);
597 fjy2 = _mm256_add_ps(fjy2,ty);
598 fjz2 = _mm256_add_ps(fjz2,tz);
602 /**************************
603 * CALCULATE INTERACTIONS *
604 **************************/
606 if (gmx_mm256_any_lt(rsq20,rcutoff2))
609 r20 = _mm256_mul_ps(rsq20,rinv20);
611 /* EWALD ELECTROSTATICS */
613 /* Analytical PME correction */
614 zeta2 = _mm256_mul_ps(beta2,rsq20);
615 rinv3 = _mm256_mul_ps(rinvsq20,rinv20);
616 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
617 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
618 felec = _mm256_mul_ps(qq20,felec);
619 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
620 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
621 velec = _mm256_sub_ps(_mm256_sub_ps(rinv20,sh_ewald),pmecorrV);
622 velec = _mm256_mul_ps(qq20,velec);
624 cutoff_mask = _mm256_cmp_ps(rsq20,rcutoff2,_CMP_LT_OQ);
626 /* Update potential sum for this i atom from the interaction with this j atom. */
627 velec = _mm256_and_ps(velec,cutoff_mask);
628 velecsum = _mm256_add_ps(velecsum,velec);
632 fscal = _mm256_and_ps(fscal,cutoff_mask);
634 /* Calculate temporary vectorial force */
635 tx = _mm256_mul_ps(fscal,dx20);
636 ty = _mm256_mul_ps(fscal,dy20);
637 tz = _mm256_mul_ps(fscal,dz20);
639 /* Update vectorial force */
640 fix2 = _mm256_add_ps(fix2,tx);
641 fiy2 = _mm256_add_ps(fiy2,ty);
642 fiz2 = _mm256_add_ps(fiz2,tz);
644 fjx0 = _mm256_add_ps(fjx0,tx);
645 fjy0 = _mm256_add_ps(fjy0,ty);
646 fjz0 = _mm256_add_ps(fjz0,tz);
650 /**************************
651 * CALCULATE INTERACTIONS *
652 **************************/
654 if (gmx_mm256_any_lt(rsq21,rcutoff2))
657 r21 = _mm256_mul_ps(rsq21,rinv21);
659 /* EWALD ELECTROSTATICS */
661 /* Analytical PME correction */
662 zeta2 = _mm256_mul_ps(beta2,rsq21);
663 rinv3 = _mm256_mul_ps(rinvsq21,rinv21);
664 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
665 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
666 felec = _mm256_mul_ps(qq21,felec);
667 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
668 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
669 velec = _mm256_sub_ps(_mm256_sub_ps(rinv21,sh_ewald),pmecorrV);
670 velec = _mm256_mul_ps(qq21,velec);
672 cutoff_mask = _mm256_cmp_ps(rsq21,rcutoff2,_CMP_LT_OQ);
674 /* Update potential sum for this i atom from the interaction with this j atom. */
675 velec = _mm256_and_ps(velec,cutoff_mask);
676 velecsum = _mm256_add_ps(velecsum,velec);
680 fscal = _mm256_and_ps(fscal,cutoff_mask);
682 /* Calculate temporary vectorial force */
683 tx = _mm256_mul_ps(fscal,dx21);
684 ty = _mm256_mul_ps(fscal,dy21);
685 tz = _mm256_mul_ps(fscal,dz21);
687 /* Update vectorial force */
688 fix2 = _mm256_add_ps(fix2,tx);
689 fiy2 = _mm256_add_ps(fiy2,ty);
690 fiz2 = _mm256_add_ps(fiz2,tz);
692 fjx1 = _mm256_add_ps(fjx1,tx);
693 fjy1 = _mm256_add_ps(fjy1,ty);
694 fjz1 = _mm256_add_ps(fjz1,tz);
698 /**************************
699 * CALCULATE INTERACTIONS *
700 **************************/
702 if (gmx_mm256_any_lt(rsq22,rcutoff2))
705 r22 = _mm256_mul_ps(rsq22,rinv22);
707 /* EWALD ELECTROSTATICS */
709 /* Analytical PME correction */
710 zeta2 = _mm256_mul_ps(beta2,rsq22);
711 rinv3 = _mm256_mul_ps(rinvsq22,rinv22);
712 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
713 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
714 felec = _mm256_mul_ps(qq22,felec);
715 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
716 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
717 velec = _mm256_sub_ps(_mm256_sub_ps(rinv22,sh_ewald),pmecorrV);
718 velec = _mm256_mul_ps(qq22,velec);
720 cutoff_mask = _mm256_cmp_ps(rsq22,rcutoff2,_CMP_LT_OQ);
722 /* Update potential sum for this i atom from the interaction with this j atom. */
723 velec = _mm256_and_ps(velec,cutoff_mask);
724 velecsum = _mm256_add_ps(velecsum,velec);
728 fscal = _mm256_and_ps(fscal,cutoff_mask);
730 /* Calculate temporary vectorial force */
731 tx = _mm256_mul_ps(fscal,dx22);
732 ty = _mm256_mul_ps(fscal,dy22);
733 tz = _mm256_mul_ps(fscal,dz22);
735 /* Update vectorial force */
736 fix2 = _mm256_add_ps(fix2,tx);
737 fiy2 = _mm256_add_ps(fiy2,ty);
738 fiz2 = _mm256_add_ps(fiz2,tz);
740 fjx2 = _mm256_add_ps(fjx2,tx);
741 fjy2 = _mm256_add_ps(fjy2,ty);
742 fjz2 = _mm256_add_ps(fjz2,tz);
746 fjptrA = f+j_coord_offsetA;
747 fjptrB = f+j_coord_offsetB;
748 fjptrC = f+j_coord_offsetC;
749 fjptrD = f+j_coord_offsetD;
750 fjptrE = f+j_coord_offsetE;
751 fjptrF = f+j_coord_offsetF;
752 fjptrG = f+j_coord_offsetG;
753 fjptrH = f+j_coord_offsetH;
755 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
756 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
758 /* Inner loop uses 981 flops */
764 /* Get j neighbor index, and coordinate index */
765 jnrlistA = jjnr[jidx];
766 jnrlistB = jjnr[jidx+1];
767 jnrlistC = jjnr[jidx+2];
768 jnrlistD = jjnr[jidx+3];
769 jnrlistE = jjnr[jidx+4];
770 jnrlistF = jjnr[jidx+5];
771 jnrlistG = jjnr[jidx+6];
772 jnrlistH = jjnr[jidx+7];
773 /* Sign of each element will be negative for non-real atoms.
774 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
775 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
777 dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
778 gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
780 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
781 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
782 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
783 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
784 jnrE = (jnrlistE>=0) ? jnrlistE : 0;
785 jnrF = (jnrlistF>=0) ? jnrlistF : 0;
786 jnrG = (jnrlistG>=0) ? jnrlistG : 0;
787 jnrH = (jnrlistH>=0) ? jnrlistH : 0;
788 j_coord_offsetA = DIM*jnrA;
789 j_coord_offsetB = DIM*jnrB;
790 j_coord_offsetC = DIM*jnrC;
791 j_coord_offsetD = DIM*jnrD;
792 j_coord_offsetE = DIM*jnrE;
793 j_coord_offsetF = DIM*jnrF;
794 j_coord_offsetG = DIM*jnrG;
795 j_coord_offsetH = DIM*jnrH;
797 /* load j atom coordinates */
798 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
799 x+j_coord_offsetC,x+j_coord_offsetD,
800 x+j_coord_offsetE,x+j_coord_offsetF,
801 x+j_coord_offsetG,x+j_coord_offsetH,
802 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
804 /* Calculate displacement vector */
805 dx00 = _mm256_sub_ps(ix0,jx0);
806 dy00 = _mm256_sub_ps(iy0,jy0);
807 dz00 = _mm256_sub_ps(iz0,jz0);
808 dx01 = _mm256_sub_ps(ix0,jx1);
809 dy01 = _mm256_sub_ps(iy0,jy1);
810 dz01 = _mm256_sub_ps(iz0,jz1);
811 dx02 = _mm256_sub_ps(ix0,jx2);
812 dy02 = _mm256_sub_ps(iy0,jy2);
813 dz02 = _mm256_sub_ps(iz0,jz2);
814 dx10 = _mm256_sub_ps(ix1,jx0);
815 dy10 = _mm256_sub_ps(iy1,jy0);
816 dz10 = _mm256_sub_ps(iz1,jz0);
817 dx11 = _mm256_sub_ps(ix1,jx1);
818 dy11 = _mm256_sub_ps(iy1,jy1);
819 dz11 = _mm256_sub_ps(iz1,jz1);
820 dx12 = _mm256_sub_ps(ix1,jx2);
821 dy12 = _mm256_sub_ps(iy1,jy2);
822 dz12 = _mm256_sub_ps(iz1,jz2);
823 dx20 = _mm256_sub_ps(ix2,jx0);
824 dy20 = _mm256_sub_ps(iy2,jy0);
825 dz20 = _mm256_sub_ps(iz2,jz0);
826 dx21 = _mm256_sub_ps(ix2,jx1);
827 dy21 = _mm256_sub_ps(iy2,jy1);
828 dz21 = _mm256_sub_ps(iz2,jz1);
829 dx22 = _mm256_sub_ps(ix2,jx2);
830 dy22 = _mm256_sub_ps(iy2,jy2);
831 dz22 = _mm256_sub_ps(iz2,jz2);
833 /* Calculate squared distance and things based on it */
834 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
835 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
836 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
837 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
838 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
839 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
840 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
841 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
842 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
844 rinv00 = gmx_mm256_invsqrt_ps(rsq00);
845 rinv01 = gmx_mm256_invsqrt_ps(rsq01);
846 rinv02 = gmx_mm256_invsqrt_ps(rsq02);
847 rinv10 = gmx_mm256_invsqrt_ps(rsq10);
848 rinv11 = gmx_mm256_invsqrt_ps(rsq11);
849 rinv12 = gmx_mm256_invsqrt_ps(rsq12);
850 rinv20 = gmx_mm256_invsqrt_ps(rsq20);
851 rinv21 = gmx_mm256_invsqrt_ps(rsq21);
852 rinv22 = gmx_mm256_invsqrt_ps(rsq22);
854 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
855 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
856 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
857 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
858 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
859 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
860 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
861 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
862 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
864 fjx0 = _mm256_setzero_ps();
865 fjy0 = _mm256_setzero_ps();
866 fjz0 = _mm256_setzero_ps();
867 fjx1 = _mm256_setzero_ps();
868 fjy1 = _mm256_setzero_ps();
869 fjz1 = _mm256_setzero_ps();
870 fjx2 = _mm256_setzero_ps();
871 fjy2 = _mm256_setzero_ps();
872 fjz2 = _mm256_setzero_ps();
874 /**************************
875 * CALCULATE INTERACTIONS *
876 **************************/
878 if (gmx_mm256_any_lt(rsq00,rcutoff2))
881 r00 = _mm256_mul_ps(rsq00,rinv00);
882 r00 = _mm256_andnot_ps(dummy_mask,r00);
884 /* EWALD ELECTROSTATICS */
886 /* Analytical PME correction */
887 zeta2 = _mm256_mul_ps(beta2,rsq00);
888 rinv3 = _mm256_mul_ps(rinvsq00,rinv00);
889 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
890 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
891 felec = _mm256_mul_ps(qq00,felec);
892 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
893 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
894 velec = _mm256_sub_ps(_mm256_sub_ps(rinv00,sh_ewald),pmecorrV);
895 velec = _mm256_mul_ps(qq00,velec);
897 cutoff_mask = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
899 /* Update potential sum for this i atom from the interaction with this j atom. */
900 velec = _mm256_and_ps(velec,cutoff_mask);
901 velec = _mm256_andnot_ps(dummy_mask,velec);
902 velecsum = _mm256_add_ps(velecsum,velec);
906 fscal = _mm256_and_ps(fscal,cutoff_mask);
908 fscal = _mm256_andnot_ps(dummy_mask,fscal);
910 /* Calculate temporary vectorial force */
911 tx = _mm256_mul_ps(fscal,dx00);
912 ty = _mm256_mul_ps(fscal,dy00);
913 tz = _mm256_mul_ps(fscal,dz00);
915 /* Update vectorial force */
916 fix0 = _mm256_add_ps(fix0,tx);
917 fiy0 = _mm256_add_ps(fiy0,ty);
918 fiz0 = _mm256_add_ps(fiz0,tz);
920 fjx0 = _mm256_add_ps(fjx0,tx);
921 fjy0 = _mm256_add_ps(fjy0,ty);
922 fjz0 = _mm256_add_ps(fjz0,tz);
926 /**************************
927 * CALCULATE INTERACTIONS *
928 **************************/
930 if (gmx_mm256_any_lt(rsq01,rcutoff2))
933 r01 = _mm256_mul_ps(rsq01,rinv01);
934 r01 = _mm256_andnot_ps(dummy_mask,r01);
936 /* EWALD ELECTROSTATICS */
938 /* Analytical PME correction */
939 zeta2 = _mm256_mul_ps(beta2,rsq01);
940 rinv3 = _mm256_mul_ps(rinvsq01,rinv01);
941 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
942 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
943 felec = _mm256_mul_ps(qq01,felec);
944 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
945 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
946 velec = _mm256_sub_ps(_mm256_sub_ps(rinv01,sh_ewald),pmecorrV);
947 velec = _mm256_mul_ps(qq01,velec);
949 cutoff_mask = _mm256_cmp_ps(rsq01,rcutoff2,_CMP_LT_OQ);
951 /* Update potential sum for this i atom from the interaction with this j atom. */
952 velec = _mm256_and_ps(velec,cutoff_mask);
953 velec = _mm256_andnot_ps(dummy_mask,velec);
954 velecsum = _mm256_add_ps(velecsum,velec);
958 fscal = _mm256_and_ps(fscal,cutoff_mask);
960 fscal = _mm256_andnot_ps(dummy_mask,fscal);
962 /* Calculate temporary vectorial force */
963 tx = _mm256_mul_ps(fscal,dx01);
964 ty = _mm256_mul_ps(fscal,dy01);
965 tz = _mm256_mul_ps(fscal,dz01);
967 /* Update vectorial force */
968 fix0 = _mm256_add_ps(fix0,tx);
969 fiy0 = _mm256_add_ps(fiy0,ty);
970 fiz0 = _mm256_add_ps(fiz0,tz);
972 fjx1 = _mm256_add_ps(fjx1,tx);
973 fjy1 = _mm256_add_ps(fjy1,ty);
974 fjz1 = _mm256_add_ps(fjz1,tz);
978 /**************************
979 * CALCULATE INTERACTIONS *
980 **************************/
982 if (gmx_mm256_any_lt(rsq02,rcutoff2))
985 r02 = _mm256_mul_ps(rsq02,rinv02);
986 r02 = _mm256_andnot_ps(dummy_mask,r02);
988 /* EWALD ELECTROSTATICS */
990 /* Analytical PME correction */
991 zeta2 = _mm256_mul_ps(beta2,rsq02);
992 rinv3 = _mm256_mul_ps(rinvsq02,rinv02);
993 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
994 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
995 felec = _mm256_mul_ps(qq02,felec);
996 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
997 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
998 velec = _mm256_sub_ps(_mm256_sub_ps(rinv02,sh_ewald),pmecorrV);
999 velec = _mm256_mul_ps(qq02,velec);
1001 cutoff_mask = _mm256_cmp_ps(rsq02,rcutoff2,_CMP_LT_OQ);
1003 /* Update potential sum for this i atom from the interaction with this j atom. */
1004 velec = _mm256_and_ps(velec,cutoff_mask);
1005 velec = _mm256_andnot_ps(dummy_mask,velec);
1006 velecsum = _mm256_add_ps(velecsum,velec);
1010 fscal = _mm256_and_ps(fscal,cutoff_mask);
1012 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1014 /* Calculate temporary vectorial force */
1015 tx = _mm256_mul_ps(fscal,dx02);
1016 ty = _mm256_mul_ps(fscal,dy02);
1017 tz = _mm256_mul_ps(fscal,dz02);
1019 /* Update vectorial force */
1020 fix0 = _mm256_add_ps(fix0,tx);
1021 fiy0 = _mm256_add_ps(fiy0,ty);
1022 fiz0 = _mm256_add_ps(fiz0,tz);
1024 fjx2 = _mm256_add_ps(fjx2,tx);
1025 fjy2 = _mm256_add_ps(fjy2,ty);
1026 fjz2 = _mm256_add_ps(fjz2,tz);
1030 /**************************
1031 * CALCULATE INTERACTIONS *
1032 **************************/
1034 if (gmx_mm256_any_lt(rsq10,rcutoff2))
1037 r10 = _mm256_mul_ps(rsq10,rinv10);
1038 r10 = _mm256_andnot_ps(dummy_mask,r10);
1040 /* EWALD ELECTROSTATICS */
1042 /* Analytical PME correction */
1043 zeta2 = _mm256_mul_ps(beta2,rsq10);
1044 rinv3 = _mm256_mul_ps(rinvsq10,rinv10);
1045 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1046 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1047 felec = _mm256_mul_ps(qq10,felec);
1048 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1049 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1050 velec = _mm256_sub_ps(_mm256_sub_ps(rinv10,sh_ewald),pmecorrV);
1051 velec = _mm256_mul_ps(qq10,velec);
1053 cutoff_mask = _mm256_cmp_ps(rsq10,rcutoff2,_CMP_LT_OQ);
1055 /* Update potential sum for this i atom from the interaction with this j atom. */
1056 velec = _mm256_and_ps(velec,cutoff_mask);
1057 velec = _mm256_andnot_ps(dummy_mask,velec);
1058 velecsum = _mm256_add_ps(velecsum,velec);
1062 fscal = _mm256_and_ps(fscal,cutoff_mask);
1064 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1066 /* Calculate temporary vectorial force */
1067 tx = _mm256_mul_ps(fscal,dx10);
1068 ty = _mm256_mul_ps(fscal,dy10);
1069 tz = _mm256_mul_ps(fscal,dz10);
1071 /* Update vectorial force */
1072 fix1 = _mm256_add_ps(fix1,tx);
1073 fiy1 = _mm256_add_ps(fiy1,ty);
1074 fiz1 = _mm256_add_ps(fiz1,tz);
1076 fjx0 = _mm256_add_ps(fjx0,tx);
1077 fjy0 = _mm256_add_ps(fjy0,ty);
1078 fjz0 = _mm256_add_ps(fjz0,tz);
1082 /**************************
1083 * CALCULATE INTERACTIONS *
1084 **************************/
1086 if (gmx_mm256_any_lt(rsq11,rcutoff2))
1089 r11 = _mm256_mul_ps(rsq11,rinv11);
1090 r11 = _mm256_andnot_ps(dummy_mask,r11);
1092 /* EWALD ELECTROSTATICS */
1094 /* Analytical PME correction */
1095 zeta2 = _mm256_mul_ps(beta2,rsq11);
1096 rinv3 = _mm256_mul_ps(rinvsq11,rinv11);
1097 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1098 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1099 felec = _mm256_mul_ps(qq11,felec);
1100 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1101 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1102 velec = _mm256_sub_ps(_mm256_sub_ps(rinv11,sh_ewald),pmecorrV);
1103 velec = _mm256_mul_ps(qq11,velec);
1105 cutoff_mask = _mm256_cmp_ps(rsq11,rcutoff2,_CMP_LT_OQ);
1107 /* Update potential sum for this i atom from the interaction with this j atom. */
1108 velec = _mm256_and_ps(velec,cutoff_mask);
1109 velec = _mm256_andnot_ps(dummy_mask,velec);
1110 velecsum = _mm256_add_ps(velecsum,velec);
1114 fscal = _mm256_and_ps(fscal,cutoff_mask);
1116 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1118 /* Calculate temporary vectorial force */
1119 tx = _mm256_mul_ps(fscal,dx11);
1120 ty = _mm256_mul_ps(fscal,dy11);
1121 tz = _mm256_mul_ps(fscal,dz11);
1123 /* Update vectorial force */
1124 fix1 = _mm256_add_ps(fix1,tx);
1125 fiy1 = _mm256_add_ps(fiy1,ty);
1126 fiz1 = _mm256_add_ps(fiz1,tz);
1128 fjx1 = _mm256_add_ps(fjx1,tx);
1129 fjy1 = _mm256_add_ps(fjy1,ty);
1130 fjz1 = _mm256_add_ps(fjz1,tz);
1134 /**************************
1135 * CALCULATE INTERACTIONS *
1136 **************************/
1138 if (gmx_mm256_any_lt(rsq12,rcutoff2))
1141 r12 = _mm256_mul_ps(rsq12,rinv12);
1142 r12 = _mm256_andnot_ps(dummy_mask,r12);
1144 /* EWALD ELECTROSTATICS */
1146 /* Analytical PME correction */
1147 zeta2 = _mm256_mul_ps(beta2,rsq12);
1148 rinv3 = _mm256_mul_ps(rinvsq12,rinv12);
1149 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1150 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1151 felec = _mm256_mul_ps(qq12,felec);
1152 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1153 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1154 velec = _mm256_sub_ps(_mm256_sub_ps(rinv12,sh_ewald),pmecorrV);
1155 velec = _mm256_mul_ps(qq12,velec);
1157 cutoff_mask = _mm256_cmp_ps(rsq12,rcutoff2,_CMP_LT_OQ);
1159 /* Update potential sum for this i atom from the interaction with this j atom. */
1160 velec = _mm256_and_ps(velec,cutoff_mask);
1161 velec = _mm256_andnot_ps(dummy_mask,velec);
1162 velecsum = _mm256_add_ps(velecsum,velec);
1166 fscal = _mm256_and_ps(fscal,cutoff_mask);
1168 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1170 /* Calculate temporary vectorial force */
1171 tx = _mm256_mul_ps(fscal,dx12);
1172 ty = _mm256_mul_ps(fscal,dy12);
1173 tz = _mm256_mul_ps(fscal,dz12);
1175 /* Update vectorial force */
1176 fix1 = _mm256_add_ps(fix1,tx);
1177 fiy1 = _mm256_add_ps(fiy1,ty);
1178 fiz1 = _mm256_add_ps(fiz1,tz);
1180 fjx2 = _mm256_add_ps(fjx2,tx);
1181 fjy2 = _mm256_add_ps(fjy2,ty);
1182 fjz2 = _mm256_add_ps(fjz2,tz);
1186 /**************************
1187 * CALCULATE INTERACTIONS *
1188 **************************/
1190 if (gmx_mm256_any_lt(rsq20,rcutoff2))
1193 r20 = _mm256_mul_ps(rsq20,rinv20);
1194 r20 = _mm256_andnot_ps(dummy_mask,r20);
1196 /* EWALD ELECTROSTATICS */
1198 /* Analytical PME correction */
1199 zeta2 = _mm256_mul_ps(beta2,rsq20);
1200 rinv3 = _mm256_mul_ps(rinvsq20,rinv20);
1201 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1202 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1203 felec = _mm256_mul_ps(qq20,felec);
1204 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1205 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1206 velec = _mm256_sub_ps(_mm256_sub_ps(rinv20,sh_ewald),pmecorrV);
1207 velec = _mm256_mul_ps(qq20,velec);
1209 cutoff_mask = _mm256_cmp_ps(rsq20,rcutoff2,_CMP_LT_OQ);
1211 /* Update potential sum for this i atom from the interaction with this j atom. */
1212 velec = _mm256_and_ps(velec,cutoff_mask);
1213 velec = _mm256_andnot_ps(dummy_mask,velec);
1214 velecsum = _mm256_add_ps(velecsum,velec);
1218 fscal = _mm256_and_ps(fscal,cutoff_mask);
1220 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1222 /* Calculate temporary vectorial force */
1223 tx = _mm256_mul_ps(fscal,dx20);
1224 ty = _mm256_mul_ps(fscal,dy20);
1225 tz = _mm256_mul_ps(fscal,dz20);
1227 /* Update vectorial force */
1228 fix2 = _mm256_add_ps(fix2,tx);
1229 fiy2 = _mm256_add_ps(fiy2,ty);
1230 fiz2 = _mm256_add_ps(fiz2,tz);
1232 fjx0 = _mm256_add_ps(fjx0,tx);
1233 fjy0 = _mm256_add_ps(fjy0,ty);
1234 fjz0 = _mm256_add_ps(fjz0,tz);
1238 /**************************
1239 * CALCULATE INTERACTIONS *
1240 **************************/
1242 if (gmx_mm256_any_lt(rsq21,rcutoff2))
1245 r21 = _mm256_mul_ps(rsq21,rinv21);
1246 r21 = _mm256_andnot_ps(dummy_mask,r21);
1248 /* EWALD ELECTROSTATICS */
1250 /* Analytical PME correction */
1251 zeta2 = _mm256_mul_ps(beta2,rsq21);
1252 rinv3 = _mm256_mul_ps(rinvsq21,rinv21);
1253 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1254 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1255 felec = _mm256_mul_ps(qq21,felec);
1256 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1257 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1258 velec = _mm256_sub_ps(_mm256_sub_ps(rinv21,sh_ewald),pmecorrV);
1259 velec = _mm256_mul_ps(qq21,velec);
1261 cutoff_mask = _mm256_cmp_ps(rsq21,rcutoff2,_CMP_LT_OQ);
1263 /* Update potential sum for this i atom from the interaction with this j atom. */
1264 velec = _mm256_and_ps(velec,cutoff_mask);
1265 velec = _mm256_andnot_ps(dummy_mask,velec);
1266 velecsum = _mm256_add_ps(velecsum,velec);
1270 fscal = _mm256_and_ps(fscal,cutoff_mask);
1272 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1274 /* Calculate temporary vectorial force */
1275 tx = _mm256_mul_ps(fscal,dx21);
1276 ty = _mm256_mul_ps(fscal,dy21);
1277 tz = _mm256_mul_ps(fscal,dz21);
1279 /* Update vectorial force */
1280 fix2 = _mm256_add_ps(fix2,tx);
1281 fiy2 = _mm256_add_ps(fiy2,ty);
1282 fiz2 = _mm256_add_ps(fiz2,tz);
1284 fjx1 = _mm256_add_ps(fjx1,tx);
1285 fjy1 = _mm256_add_ps(fjy1,ty);
1286 fjz1 = _mm256_add_ps(fjz1,tz);
1290 /**************************
1291 * CALCULATE INTERACTIONS *
1292 **************************/
1294 if (gmx_mm256_any_lt(rsq22,rcutoff2))
1297 r22 = _mm256_mul_ps(rsq22,rinv22);
1298 r22 = _mm256_andnot_ps(dummy_mask,r22);
1300 /* EWALD ELECTROSTATICS */
1302 /* Analytical PME correction */
1303 zeta2 = _mm256_mul_ps(beta2,rsq22);
1304 rinv3 = _mm256_mul_ps(rinvsq22,rinv22);
1305 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1306 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1307 felec = _mm256_mul_ps(qq22,felec);
1308 pmecorrV = gmx_mm256_pmecorrV_ps(zeta2);
1309 pmecorrV = _mm256_mul_ps(pmecorrV,beta);
1310 velec = _mm256_sub_ps(_mm256_sub_ps(rinv22,sh_ewald),pmecorrV);
1311 velec = _mm256_mul_ps(qq22,velec);
1313 cutoff_mask = _mm256_cmp_ps(rsq22,rcutoff2,_CMP_LT_OQ);
1315 /* Update potential sum for this i atom from the interaction with this j atom. */
1316 velec = _mm256_and_ps(velec,cutoff_mask);
1317 velec = _mm256_andnot_ps(dummy_mask,velec);
1318 velecsum = _mm256_add_ps(velecsum,velec);
1322 fscal = _mm256_and_ps(fscal,cutoff_mask);
1324 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1326 /* Calculate temporary vectorial force */
1327 tx = _mm256_mul_ps(fscal,dx22);
1328 ty = _mm256_mul_ps(fscal,dy22);
1329 tz = _mm256_mul_ps(fscal,dz22);
1331 /* Update vectorial force */
1332 fix2 = _mm256_add_ps(fix2,tx);
1333 fiy2 = _mm256_add_ps(fiy2,ty);
1334 fiz2 = _mm256_add_ps(fiz2,tz);
1336 fjx2 = _mm256_add_ps(fjx2,tx);
1337 fjy2 = _mm256_add_ps(fjy2,ty);
1338 fjz2 = _mm256_add_ps(fjz2,tz);
1342 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1343 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1344 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1345 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1346 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1347 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1348 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1349 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1351 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1352 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1354 /* Inner loop uses 990 flops */
1357 /* End of innermost loop */
1359 gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1360 f+i_coord_offset,fshift+i_shift_offset);
1363 /* Update potential energies */
1364 gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1366 /* Increment number of inner iterations */
1367 inneriter += j_index_end - j_index_start;
1369 /* Outer loop uses 19 flops */
1372 /* Increment number of outer iterations */
1375 /* Update outer/inner flops */
1377 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3W3_VF,outeriter*19 + inneriter*990);
1380 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwNone_GeomW3W3_F_avx_256_single
1381 * Electrostatics interaction: Ewald
1382 * VdW interaction: None
1383 * Geometry: Water3-Water3
1384 * Calculate force/pot: Force
1387 nb_kernel_ElecEwSh_VdwNone_GeomW3W3_F_avx_256_single
1388 (t_nblist * gmx_restrict nlist,
1389 rvec * gmx_restrict xx,
1390 rvec * gmx_restrict ff,
1391 t_forcerec * gmx_restrict fr,
1392 t_mdatoms * gmx_restrict mdatoms,
1393 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1394 t_nrnb * gmx_restrict nrnb)
1396 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1397 * just 0 for non-waters.
1398 * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
1399 * jnr indices corresponding to data put in the four positions in the SIMD register.
1401 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1402 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1403 int jnrA,jnrB,jnrC,jnrD;
1404 int jnrE,jnrF,jnrG,jnrH;
1405 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1406 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1407 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1408 int j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
1409 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1410 real rcutoff_scalar;
1411 real *shiftvec,*fshift,*x,*f;
1412 real *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
1413 real scratch[4*DIM];
1414 __m256 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1415 real * vdwioffsetptr0;
1416 __m256 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1417 real * vdwioffsetptr1;
1418 __m256 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1419 real * vdwioffsetptr2;
1420 __m256 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1421 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
1422 __m256 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1423 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
1424 __m256 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1425 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
1426 __m256 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1427 __m256 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1428 __m256 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1429 __m256 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1430 __m256 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1431 __m256 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1432 __m256 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1433 __m256 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1434 __m256 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1435 __m256 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1436 __m256 velec,felec,velecsum,facel,crf,krf,krf2;
1439 __m128i ewitab_lo,ewitab_hi;
1440 __m256 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1441 __m256 beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
1443 __m256 dummy_mask,cutoff_mask;
1444 __m256 signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
1445 __m256 one = _mm256_set1_ps(1.0);
1446 __m256 two = _mm256_set1_ps(2.0);
1452 jindex = nlist->jindex;
1454 shiftidx = nlist->shift;
1456 shiftvec = fr->shift_vec[0];
1457 fshift = fr->fshift[0];
1458 facel = _mm256_set1_ps(fr->epsfac);
1459 charge = mdatoms->chargeA;
1461 sh_ewald = _mm256_set1_ps(fr->ic->sh_ewald);
1462 beta = _mm256_set1_ps(fr->ic->ewaldcoeff_q);
1463 beta2 = _mm256_mul_ps(beta,beta);
1464 beta3 = _mm256_mul_ps(beta,beta2);
1466 ewtab = fr->ic->tabq_coul_F;
1467 ewtabscale = _mm256_set1_ps(fr->ic->tabq_scale);
1468 ewtabhalfspace = _mm256_set1_ps(0.5/fr->ic->tabq_scale);
1470 /* Setup water-specific parameters */
1471 inr = nlist->iinr[0];
1472 iq0 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
1473 iq1 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
1474 iq2 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
1476 jq0 = _mm256_set1_ps(charge[inr+0]);
1477 jq1 = _mm256_set1_ps(charge[inr+1]);
1478 jq2 = _mm256_set1_ps(charge[inr+2]);
1479 qq00 = _mm256_mul_ps(iq0,jq0);
1480 qq01 = _mm256_mul_ps(iq0,jq1);
1481 qq02 = _mm256_mul_ps(iq0,jq2);
1482 qq10 = _mm256_mul_ps(iq1,jq0);
1483 qq11 = _mm256_mul_ps(iq1,jq1);
1484 qq12 = _mm256_mul_ps(iq1,jq2);
1485 qq20 = _mm256_mul_ps(iq2,jq0);
1486 qq21 = _mm256_mul_ps(iq2,jq1);
1487 qq22 = _mm256_mul_ps(iq2,jq2);
1489 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
1490 rcutoff_scalar = fr->rcoulomb;
1491 rcutoff = _mm256_set1_ps(rcutoff_scalar);
1492 rcutoff2 = _mm256_mul_ps(rcutoff,rcutoff);
1494 /* Avoid stupid compiler warnings */
1495 jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
1496 j_coord_offsetA = 0;
1497 j_coord_offsetB = 0;
1498 j_coord_offsetC = 0;
1499 j_coord_offsetD = 0;
1500 j_coord_offsetE = 0;
1501 j_coord_offsetF = 0;
1502 j_coord_offsetG = 0;
1503 j_coord_offsetH = 0;
1508 for(iidx=0;iidx<4*DIM;iidx++)
1510 scratch[iidx] = 0.0;
1513 /* Start outer loop over neighborlists */
1514 for(iidx=0; iidx<nri; iidx++)
1516 /* Load shift vector for this list */
1517 i_shift_offset = DIM*shiftidx[iidx];
1519 /* Load limits for loop over neighbors */
1520 j_index_start = jindex[iidx];
1521 j_index_end = jindex[iidx+1];
1523 /* Get outer coordinate index */
1525 i_coord_offset = DIM*inr;
1527 /* Load i particle coords and add shift vector */
1528 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1529 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1531 fix0 = _mm256_setzero_ps();
1532 fiy0 = _mm256_setzero_ps();
1533 fiz0 = _mm256_setzero_ps();
1534 fix1 = _mm256_setzero_ps();
1535 fiy1 = _mm256_setzero_ps();
1536 fiz1 = _mm256_setzero_ps();
1537 fix2 = _mm256_setzero_ps();
1538 fiy2 = _mm256_setzero_ps();
1539 fiz2 = _mm256_setzero_ps();
1541 /* Start inner kernel loop */
1542 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
1545 /* Get j neighbor index, and coordinate index */
1547 jnrB = jjnr[jidx+1];
1548 jnrC = jjnr[jidx+2];
1549 jnrD = jjnr[jidx+3];
1550 jnrE = jjnr[jidx+4];
1551 jnrF = jjnr[jidx+5];
1552 jnrG = jjnr[jidx+6];
1553 jnrH = jjnr[jidx+7];
1554 j_coord_offsetA = DIM*jnrA;
1555 j_coord_offsetB = DIM*jnrB;
1556 j_coord_offsetC = DIM*jnrC;
1557 j_coord_offsetD = DIM*jnrD;
1558 j_coord_offsetE = DIM*jnrE;
1559 j_coord_offsetF = DIM*jnrF;
1560 j_coord_offsetG = DIM*jnrG;
1561 j_coord_offsetH = DIM*jnrH;
1563 /* load j atom coordinates */
1564 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1565 x+j_coord_offsetC,x+j_coord_offsetD,
1566 x+j_coord_offsetE,x+j_coord_offsetF,
1567 x+j_coord_offsetG,x+j_coord_offsetH,
1568 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1570 /* Calculate displacement vector */
1571 dx00 = _mm256_sub_ps(ix0,jx0);
1572 dy00 = _mm256_sub_ps(iy0,jy0);
1573 dz00 = _mm256_sub_ps(iz0,jz0);
1574 dx01 = _mm256_sub_ps(ix0,jx1);
1575 dy01 = _mm256_sub_ps(iy0,jy1);
1576 dz01 = _mm256_sub_ps(iz0,jz1);
1577 dx02 = _mm256_sub_ps(ix0,jx2);
1578 dy02 = _mm256_sub_ps(iy0,jy2);
1579 dz02 = _mm256_sub_ps(iz0,jz2);
1580 dx10 = _mm256_sub_ps(ix1,jx0);
1581 dy10 = _mm256_sub_ps(iy1,jy0);
1582 dz10 = _mm256_sub_ps(iz1,jz0);
1583 dx11 = _mm256_sub_ps(ix1,jx1);
1584 dy11 = _mm256_sub_ps(iy1,jy1);
1585 dz11 = _mm256_sub_ps(iz1,jz1);
1586 dx12 = _mm256_sub_ps(ix1,jx2);
1587 dy12 = _mm256_sub_ps(iy1,jy2);
1588 dz12 = _mm256_sub_ps(iz1,jz2);
1589 dx20 = _mm256_sub_ps(ix2,jx0);
1590 dy20 = _mm256_sub_ps(iy2,jy0);
1591 dz20 = _mm256_sub_ps(iz2,jz0);
1592 dx21 = _mm256_sub_ps(ix2,jx1);
1593 dy21 = _mm256_sub_ps(iy2,jy1);
1594 dz21 = _mm256_sub_ps(iz2,jz1);
1595 dx22 = _mm256_sub_ps(ix2,jx2);
1596 dy22 = _mm256_sub_ps(iy2,jy2);
1597 dz22 = _mm256_sub_ps(iz2,jz2);
1599 /* Calculate squared distance and things based on it */
1600 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1601 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1602 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1603 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1604 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1605 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1606 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1607 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1608 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1610 rinv00 = gmx_mm256_invsqrt_ps(rsq00);
1611 rinv01 = gmx_mm256_invsqrt_ps(rsq01);
1612 rinv02 = gmx_mm256_invsqrt_ps(rsq02);
1613 rinv10 = gmx_mm256_invsqrt_ps(rsq10);
1614 rinv11 = gmx_mm256_invsqrt_ps(rsq11);
1615 rinv12 = gmx_mm256_invsqrt_ps(rsq12);
1616 rinv20 = gmx_mm256_invsqrt_ps(rsq20);
1617 rinv21 = gmx_mm256_invsqrt_ps(rsq21);
1618 rinv22 = gmx_mm256_invsqrt_ps(rsq22);
1620 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
1621 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
1622 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
1623 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
1624 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
1625 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
1626 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
1627 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
1628 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
1630 fjx0 = _mm256_setzero_ps();
1631 fjy0 = _mm256_setzero_ps();
1632 fjz0 = _mm256_setzero_ps();
1633 fjx1 = _mm256_setzero_ps();
1634 fjy1 = _mm256_setzero_ps();
1635 fjz1 = _mm256_setzero_ps();
1636 fjx2 = _mm256_setzero_ps();
1637 fjy2 = _mm256_setzero_ps();
1638 fjz2 = _mm256_setzero_ps();
1640 /**************************
1641 * CALCULATE INTERACTIONS *
1642 **************************/
1644 if (gmx_mm256_any_lt(rsq00,rcutoff2))
1647 r00 = _mm256_mul_ps(rsq00,rinv00);
1649 /* EWALD ELECTROSTATICS */
1651 /* Analytical PME correction */
1652 zeta2 = _mm256_mul_ps(beta2,rsq00);
1653 rinv3 = _mm256_mul_ps(rinvsq00,rinv00);
1654 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1655 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1656 felec = _mm256_mul_ps(qq00,felec);
1658 cutoff_mask = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
1662 fscal = _mm256_and_ps(fscal,cutoff_mask);
1664 /* Calculate temporary vectorial force */
1665 tx = _mm256_mul_ps(fscal,dx00);
1666 ty = _mm256_mul_ps(fscal,dy00);
1667 tz = _mm256_mul_ps(fscal,dz00);
1669 /* Update vectorial force */
1670 fix0 = _mm256_add_ps(fix0,tx);
1671 fiy0 = _mm256_add_ps(fiy0,ty);
1672 fiz0 = _mm256_add_ps(fiz0,tz);
1674 fjx0 = _mm256_add_ps(fjx0,tx);
1675 fjy0 = _mm256_add_ps(fjy0,ty);
1676 fjz0 = _mm256_add_ps(fjz0,tz);
1680 /**************************
1681 * CALCULATE INTERACTIONS *
1682 **************************/
1684 if (gmx_mm256_any_lt(rsq01,rcutoff2))
1687 r01 = _mm256_mul_ps(rsq01,rinv01);
1689 /* EWALD ELECTROSTATICS */
1691 /* Analytical PME correction */
1692 zeta2 = _mm256_mul_ps(beta2,rsq01);
1693 rinv3 = _mm256_mul_ps(rinvsq01,rinv01);
1694 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1695 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1696 felec = _mm256_mul_ps(qq01,felec);
1698 cutoff_mask = _mm256_cmp_ps(rsq01,rcutoff2,_CMP_LT_OQ);
1702 fscal = _mm256_and_ps(fscal,cutoff_mask);
1704 /* Calculate temporary vectorial force */
1705 tx = _mm256_mul_ps(fscal,dx01);
1706 ty = _mm256_mul_ps(fscal,dy01);
1707 tz = _mm256_mul_ps(fscal,dz01);
1709 /* Update vectorial force */
1710 fix0 = _mm256_add_ps(fix0,tx);
1711 fiy0 = _mm256_add_ps(fiy0,ty);
1712 fiz0 = _mm256_add_ps(fiz0,tz);
1714 fjx1 = _mm256_add_ps(fjx1,tx);
1715 fjy1 = _mm256_add_ps(fjy1,ty);
1716 fjz1 = _mm256_add_ps(fjz1,tz);
1720 /**************************
1721 * CALCULATE INTERACTIONS *
1722 **************************/
1724 if (gmx_mm256_any_lt(rsq02,rcutoff2))
1727 r02 = _mm256_mul_ps(rsq02,rinv02);
1729 /* EWALD ELECTROSTATICS */
1731 /* Analytical PME correction */
1732 zeta2 = _mm256_mul_ps(beta2,rsq02);
1733 rinv3 = _mm256_mul_ps(rinvsq02,rinv02);
1734 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1735 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1736 felec = _mm256_mul_ps(qq02,felec);
1738 cutoff_mask = _mm256_cmp_ps(rsq02,rcutoff2,_CMP_LT_OQ);
1742 fscal = _mm256_and_ps(fscal,cutoff_mask);
1744 /* Calculate temporary vectorial force */
1745 tx = _mm256_mul_ps(fscal,dx02);
1746 ty = _mm256_mul_ps(fscal,dy02);
1747 tz = _mm256_mul_ps(fscal,dz02);
1749 /* Update vectorial force */
1750 fix0 = _mm256_add_ps(fix0,tx);
1751 fiy0 = _mm256_add_ps(fiy0,ty);
1752 fiz0 = _mm256_add_ps(fiz0,tz);
1754 fjx2 = _mm256_add_ps(fjx2,tx);
1755 fjy2 = _mm256_add_ps(fjy2,ty);
1756 fjz2 = _mm256_add_ps(fjz2,tz);
1760 /**************************
1761 * CALCULATE INTERACTIONS *
1762 **************************/
1764 if (gmx_mm256_any_lt(rsq10,rcutoff2))
1767 r10 = _mm256_mul_ps(rsq10,rinv10);
1769 /* EWALD ELECTROSTATICS */
1771 /* Analytical PME correction */
1772 zeta2 = _mm256_mul_ps(beta2,rsq10);
1773 rinv3 = _mm256_mul_ps(rinvsq10,rinv10);
1774 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1775 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1776 felec = _mm256_mul_ps(qq10,felec);
1778 cutoff_mask = _mm256_cmp_ps(rsq10,rcutoff2,_CMP_LT_OQ);
1782 fscal = _mm256_and_ps(fscal,cutoff_mask);
1784 /* Calculate temporary vectorial force */
1785 tx = _mm256_mul_ps(fscal,dx10);
1786 ty = _mm256_mul_ps(fscal,dy10);
1787 tz = _mm256_mul_ps(fscal,dz10);
1789 /* Update vectorial force */
1790 fix1 = _mm256_add_ps(fix1,tx);
1791 fiy1 = _mm256_add_ps(fiy1,ty);
1792 fiz1 = _mm256_add_ps(fiz1,tz);
1794 fjx0 = _mm256_add_ps(fjx0,tx);
1795 fjy0 = _mm256_add_ps(fjy0,ty);
1796 fjz0 = _mm256_add_ps(fjz0,tz);
1800 /**************************
1801 * CALCULATE INTERACTIONS *
1802 **************************/
1804 if (gmx_mm256_any_lt(rsq11,rcutoff2))
1807 r11 = _mm256_mul_ps(rsq11,rinv11);
1809 /* EWALD ELECTROSTATICS */
1811 /* Analytical PME correction */
1812 zeta2 = _mm256_mul_ps(beta2,rsq11);
1813 rinv3 = _mm256_mul_ps(rinvsq11,rinv11);
1814 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1815 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1816 felec = _mm256_mul_ps(qq11,felec);
1818 cutoff_mask = _mm256_cmp_ps(rsq11,rcutoff2,_CMP_LT_OQ);
1822 fscal = _mm256_and_ps(fscal,cutoff_mask);
1824 /* Calculate temporary vectorial force */
1825 tx = _mm256_mul_ps(fscal,dx11);
1826 ty = _mm256_mul_ps(fscal,dy11);
1827 tz = _mm256_mul_ps(fscal,dz11);
1829 /* Update vectorial force */
1830 fix1 = _mm256_add_ps(fix1,tx);
1831 fiy1 = _mm256_add_ps(fiy1,ty);
1832 fiz1 = _mm256_add_ps(fiz1,tz);
1834 fjx1 = _mm256_add_ps(fjx1,tx);
1835 fjy1 = _mm256_add_ps(fjy1,ty);
1836 fjz1 = _mm256_add_ps(fjz1,tz);
1840 /**************************
1841 * CALCULATE INTERACTIONS *
1842 **************************/
1844 if (gmx_mm256_any_lt(rsq12,rcutoff2))
1847 r12 = _mm256_mul_ps(rsq12,rinv12);
1849 /* EWALD ELECTROSTATICS */
1851 /* Analytical PME correction */
1852 zeta2 = _mm256_mul_ps(beta2,rsq12);
1853 rinv3 = _mm256_mul_ps(rinvsq12,rinv12);
1854 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1855 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1856 felec = _mm256_mul_ps(qq12,felec);
1858 cutoff_mask = _mm256_cmp_ps(rsq12,rcutoff2,_CMP_LT_OQ);
1862 fscal = _mm256_and_ps(fscal,cutoff_mask);
1864 /* Calculate temporary vectorial force */
1865 tx = _mm256_mul_ps(fscal,dx12);
1866 ty = _mm256_mul_ps(fscal,dy12);
1867 tz = _mm256_mul_ps(fscal,dz12);
1869 /* Update vectorial force */
1870 fix1 = _mm256_add_ps(fix1,tx);
1871 fiy1 = _mm256_add_ps(fiy1,ty);
1872 fiz1 = _mm256_add_ps(fiz1,tz);
1874 fjx2 = _mm256_add_ps(fjx2,tx);
1875 fjy2 = _mm256_add_ps(fjy2,ty);
1876 fjz2 = _mm256_add_ps(fjz2,tz);
1880 /**************************
1881 * CALCULATE INTERACTIONS *
1882 **************************/
1884 if (gmx_mm256_any_lt(rsq20,rcutoff2))
1887 r20 = _mm256_mul_ps(rsq20,rinv20);
1889 /* EWALD ELECTROSTATICS */
1891 /* Analytical PME correction */
1892 zeta2 = _mm256_mul_ps(beta2,rsq20);
1893 rinv3 = _mm256_mul_ps(rinvsq20,rinv20);
1894 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1895 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1896 felec = _mm256_mul_ps(qq20,felec);
1898 cutoff_mask = _mm256_cmp_ps(rsq20,rcutoff2,_CMP_LT_OQ);
1902 fscal = _mm256_and_ps(fscal,cutoff_mask);
1904 /* Calculate temporary vectorial force */
1905 tx = _mm256_mul_ps(fscal,dx20);
1906 ty = _mm256_mul_ps(fscal,dy20);
1907 tz = _mm256_mul_ps(fscal,dz20);
1909 /* Update vectorial force */
1910 fix2 = _mm256_add_ps(fix2,tx);
1911 fiy2 = _mm256_add_ps(fiy2,ty);
1912 fiz2 = _mm256_add_ps(fiz2,tz);
1914 fjx0 = _mm256_add_ps(fjx0,tx);
1915 fjy0 = _mm256_add_ps(fjy0,ty);
1916 fjz0 = _mm256_add_ps(fjz0,tz);
1920 /**************************
1921 * CALCULATE INTERACTIONS *
1922 **************************/
1924 if (gmx_mm256_any_lt(rsq21,rcutoff2))
1927 r21 = _mm256_mul_ps(rsq21,rinv21);
1929 /* EWALD ELECTROSTATICS */
1931 /* Analytical PME correction */
1932 zeta2 = _mm256_mul_ps(beta2,rsq21);
1933 rinv3 = _mm256_mul_ps(rinvsq21,rinv21);
1934 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1935 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1936 felec = _mm256_mul_ps(qq21,felec);
1938 cutoff_mask = _mm256_cmp_ps(rsq21,rcutoff2,_CMP_LT_OQ);
1942 fscal = _mm256_and_ps(fscal,cutoff_mask);
1944 /* Calculate temporary vectorial force */
1945 tx = _mm256_mul_ps(fscal,dx21);
1946 ty = _mm256_mul_ps(fscal,dy21);
1947 tz = _mm256_mul_ps(fscal,dz21);
1949 /* Update vectorial force */
1950 fix2 = _mm256_add_ps(fix2,tx);
1951 fiy2 = _mm256_add_ps(fiy2,ty);
1952 fiz2 = _mm256_add_ps(fiz2,tz);
1954 fjx1 = _mm256_add_ps(fjx1,tx);
1955 fjy1 = _mm256_add_ps(fjy1,ty);
1956 fjz1 = _mm256_add_ps(fjz1,tz);
1960 /**************************
1961 * CALCULATE INTERACTIONS *
1962 **************************/
1964 if (gmx_mm256_any_lt(rsq22,rcutoff2))
1967 r22 = _mm256_mul_ps(rsq22,rinv22);
1969 /* EWALD ELECTROSTATICS */
1971 /* Analytical PME correction */
1972 zeta2 = _mm256_mul_ps(beta2,rsq22);
1973 rinv3 = _mm256_mul_ps(rinvsq22,rinv22);
1974 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
1975 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
1976 felec = _mm256_mul_ps(qq22,felec);
1978 cutoff_mask = _mm256_cmp_ps(rsq22,rcutoff2,_CMP_LT_OQ);
1982 fscal = _mm256_and_ps(fscal,cutoff_mask);
1984 /* Calculate temporary vectorial force */
1985 tx = _mm256_mul_ps(fscal,dx22);
1986 ty = _mm256_mul_ps(fscal,dy22);
1987 tz = _mm256_mul_ps(fscal,dz22);
1989 /* Update vectorial force */
1990 fix2 = _mm256_add_ps(fix2,tx);
1991 fiy2 = _mm256_add_ps(fiy2,ty);
1992 fiz2 = _mm256_add_ps(fiz2,tz);
1994 fjx2 = _mm256_add_ps(fjx2,tx);
1995 fjy2 = _mm256_add_ps(fjy2,ty);
1996 fjz2 = _mm256_add_ps(fjz2,tz);
2000 fjptrA = f+j_coord_offsetA;
2001 fjptrB = f+j_coord_offsetB;
2002 fjptrC = f+j_coord_offsetC;
2003 fjptrD = f+j_coord_offsetD;
2004 fjptrE = f+j_coord_offsetE;
2005 fjptrF = f+j_coord_offsetF;
2006 fjptrG = f+j_coord_offsetG;
2007 fjptrH = f+j_coord_offsetH;
2009 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
2010 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2012 /* Inner loop uses 531 flops */
2015 if(jidx<j_index_end)
2018 /* Get j neighbor index, and coordinate index */
2019 jnrlistA = jjnr[jidx];
2020 jnrlistB = jjnr[jidx+1];
2021 jnrlistC = jjnr[jidx+2];
2022 jnrlistD = jjnr[jidx+3];
2023 jnrlistE = jjnr[jidx+4];
2024 jnrlistF = jjnr[jidx+5];
2025 jnrlistG = jjnr[jidx+6];
2026 jnrlistH = jjnr[jidx+7];
2027 /* Sign of each element will be negative for non-real atoms.
2028 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
2029 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
2031 dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
2032 gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
2034 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
2035 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
2036 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
2037 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
2038 jnrE = (jnrlistE>=0) ? jnrlistE : 0;
2039 jnrF = (jnrlistF>=0) ? jnrlistF : 0;
2040 jnrG = (jnrlistG>=0) ? jnrlistG : 0;
2041 jnrH = (jnrlistH>=0) ? jnrlistH : 0;
2042 j_coord_offsetA = DIM*jnrA;
2043 j_coord_offsetB = DIM*jnrB;
2044 j_coord_offsetC = DIM*jnrC;
2045 j_coord_offsetD = DIM*jnrD;
2046 j_coord_offsetE = DIM*jnrE;
2047 j_coord_offsetF = DIM*jnrF;
2048 j_coord_offsetG = DIM*jnrG;
2049 j_coord_offsetH = DIM*jnrH;
2051 /* load j atom coordinates */
2052 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
2053 x+j_coord_offsetC,x+j_coord_offsetD,
2054 x+j_coord_offsetE,x+j_coord_offsetF,
2055 x+j_coord_offsetG,x+j_coord_offsetH,
2056 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
2058 /* Calculate displacement vector */
2059 dx00 = _mm256_sub_ps(ix0,jx0);
2060 dy00 = _mm256_sub_ps(iy0,jy0);
2061 dz00 = _mm256_sub_ps(iz0,jz0);
2062 dx01 = _mm256_sub_ps(ix0,jx1);
2063 dy01 = _mm256_sub_ps(iy0,jy1);
2064 dz01 = _mm256_sub_ps(iz0,jz1);
2065 dx02 = _mm256_sub_ps(ix0,jx2);
2066 dy02 = _mm256_sub_ps(iy0,jy2);
2067 dz02 = _mm256_sub_ps(iz0,jz2);
2068 dx10 = _mm256_sub_ps(ix1,jx0);
2069 dy10 = _mm256_sub_ps(iy1,jy0);
2070 dz10 = _mm256_sub_ps(iz1,jz0);
2071 dx11 = _mm256_sub_ps(ix1,jx1);
2072 dy11 = _mm256_sub_ps(iy1,jy1);
2073 dz11 = _mm256_sub_ps(iz1,jz1);
2074 dx12 = _mm256_sub_ps(ix1,jx2);
2075 dy12 = _mm256_sub_ps(iy1,jy2);
2076 dz12 = _mm256_sub_ps(iz1,jz2);
2077 dx20 = _mm256_sub_ps(ix2,jx0);
2078 dy20 = _mm256_sub_ps(iy2,jy0);
2079 dz20 = _mm256_sub_ps(iz2,jz0);
2080 dx21 = _mm256_sub_ps(ix2,jx1);
2081 dy21 = _mm256_sub_ps(iy2,jy1);
2082 dz21 = _mm256_sub_ps(iz2,jz1);
2083 dx22 = _mm256_sub_ps(ix2,jx2);
2084 dy22 = _mm256_sub_ps(iy2,jy2);
2085 dz22 = _mm256_sub_ps(iz2,jz2);
2087 /* Calculate squared distance and things based on it */
2088 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
2089 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
2090 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
2091 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
2092 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
2093 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
2094 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
2095 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
2096 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
2098 rinv00 = gmx_mm256_invsqrt_ps(rsq00);
2099 rinv01 = gmx_mm256_invsqrt_ps(rsq01);
2100 rinv02 = gmx_mm256_invsqrt_ps(rsq02);
2101 rinv10 = gmx_mm256_invsqrt_ps(rsq10);
2102 rinv11 = gmx_mm256_invsqrt_ps(rsq11);
2103 rinv12 = gmx_mm256_invsqrt_ps(rsq12);
2104 rinv20 = gmx_mm256_invsqrt_ps(rsq20);
2105 rinv21 = gmx_mm256_invsqrt_ps(rsq21);
2106 rinv22 = gmx_mm256_invsqrt_ps(rsq22);
2108 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
2109 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
2110 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
2111 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
2112 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
2113 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
2114 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
2115 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
2116 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
2118 fjx0 = _mm256_setzero_ps();
2119 fjy0 = _mm256_setzero_ps();
2120 fjz0 = _mm256_setzero_ps();
2121 fjx1 = _mm256_setzero_ps();
2122 fjy1 = _mm256_setzero_ps();
2123 fjz1 = _mm256_setzero_ps();
2124 fjx2 = _mm256_setzero_ps();
2125 fjy2 = _mm256_setzero_ps();
2126 fjz2 = _mm256_setzero_ps();
2128 /**************************
2129 * CALCULATE INTERACTIONS *
2130 **************************/
2132 if (gmx_mm256_any_lt(rsq00,rcutoff2))
2135 r00 = _mm256_mul_ps(rsq00,rinv00);
2136 r00 = _mm256_andnot_ps(dummy_mask,r00);
2138 /* EWALD ELECTROSTATICS */
2140 /* Analytical PME correction */
2141 zeta2 = _mm256_mul_ps(beta2,rsq00);
2142 rinv3 = _mm256_mul_ps(rinvsq00,rinv00);
2143 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2144 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2145 felec = _mm256_mul_ps(qq00,felec);
2147 cutoff_mask = _mm256_cmp_ps(rsq00,rcutoff2,_CMP_LT_OQ);
2151 fscal = _mm256_and_ps(fscal,cutoff_mask);
2153 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2155 /* Calculate temporary vectorial force */
2156 tx = _mm256_mul_ps(fscal,dx00);
2157 ty = _mm256_mul_ps(fscal,dy00);
2158 tz = _mm256_mul_ps(fscal,dz00);
2160 /* Update vectorial force */
2161 fix0 = _mm256_add_ps(fix0,tx);
2162 fiy0 = _mm256_add_ps(fiy0,ty);
2163 fiz0 = _mm256_add_ps(fiz0,tz);
2165 fjx0 = _mm256_add_ps(fjx0,tx);
2166 fjy0 = _mm256_add_ps(fjy0,ty);
2167 fjz0 = _mm256_add_ps(fjz0,tz);
2171 /**************************
2172 * CALCULATE INTERACTIONS *
2173 **************************/
2175 if (gmx_mm256_any_lt(rsq01,rcutoff2))
2178 r01 = _mm256_mul_ps(rsq01,rinv01);
2179 r01 = _mm256_andnot_ps(dummy_mask,r01);
2181 /* EWALD ELECTROSTATICS */
2183 /* Analytical PME correction */
2184 zeta2 = _mm256_mul_ps(beta2,rsq01);
2185 rinv3 = _mm256_mul_ps(rinvsq01,rinv01);
2186 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2187 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2188 felec = _mm256_mul_ps(qq01,felec);
2190 cutoff_mask = _mm256_cmp_ps(rsq01,rcutoff2,_CMP_LT_OQ);
2194 fscal = _mm256_and_ps(fscal,cutoff_mask);
2196 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2198 /* Calculate temporary vectorial force */
2199 tx = _mm256_mul_ps(fscal,dx01);
2200 ty = _mm256_mul_ps(fscal,dy01);
2201 tz = _mm256_mul_ps(fscal,dz01);
2203 /* Update vectorial force */
2204 fix0 = _mm256_add_ps(fix0,tx);
2205 fiy0 = _mm256_add_ps(fiy0,ty);
2206 fiz0 = _mm256_add_ps(fiz0,tz);
2208 fjx1 = _mm256_add_ps(fjx1,tx);
2209 fjy1 = _mm256_add_ps(fjy1,ty);
2210 fjz1 = _mm256_add_ps(fjz1,tz);
2214 /**************************
2215 * CALCULATE INTERACTIONS *
2216 **************************/
2218 if (gmx_mm256_any_lt(rsq02,rcutoff2))
2221 r02 = _mm256_mul_ps(rsq02,rinv02);
2222 r02 = _mm256_andnot_ps(dummy_mask,r02);
2224 /* EWALD ELECTROSTATICS */
2226 /* Analytical PME correction */
2227 zeta2 = _mm256_mul_ps(beta2,rsq02);
2228 rinv3 = _mm256_mul_ps(rinvsq02,rinv02);
2229 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2230 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2231 felec = _mm256_mul_ps(qq02,felec);
2233 cutoff_mask = _mm256_cmp_ps(rsq02,rcutoff2,_CMP_LT_OQ);
2237 fscal = _mm256_and_ps(fscal,cutoff_mask);
2239 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2241 /* Calculate temporary vectorial force */
2242 tx = _mm256_mul_ps(fscal,dx02);
2243 ty = _mm256_mul_ps(fscal,dy02);
2244 tz = _mm256_mul_ps(fscal,dz02);
2246 /* Update vectorial force */
2247 fix0 = _mm256_add_ps(fix0,tx);
2248 fiy0 = _mm256_add_ps(fiy0,ty);
2249 fiz0 = _mm256_add_ps(fiz0,tz);
2251 fjx2 = _mm256_add_ps(fjx2,tx);
2252 fjy2 = _mm256_add_ps(fjy2,ty);
2253 fjz2 = _mm256_add_ps(fjz2,tz);
2257 /**************************
2258 * CALCULATE INTERACTIONS *
2259 **************************/
2261 if (gmx_mm256_any_lt(rsq10,rcutoff2))
2264 r10 = _mm256_mul_ps(rsq10,rinv10);
2265 r10 = _mm256_andnot_ps(dummy_mask,r10);
2267 /* EWALD ELECTROSTATICS */
2269 /* Analytical PME correction */
2270 zeta2 = _mm256_mul_ps(beta2,rsq10);
2271 rinv3 = _mm256_mul_ps(rinvsq10,rinv10);
2272 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2273 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2274 felec = _mm256_mul_ps(qq10,felec);
2276 cutoff_mask = _mm256_cmp_ps(rsq10,rcutoff2,_CMP_LT_OQ);
2280 fscal = _mm256_and_ps(fscal,cutoff_mask);
2282 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2284 /* Calculate temporary vectorial force */
2285 tx = _mm256_mul_ps(fscal,dx10);
2286 ty = _mm256_mul_ps(fscal,dy10);
2287 tz = _mm256_mul_ps(fscal,dz10);
2289 /* Update vectorial force */
2290 fix1 = _mm256_add_ps(fix1,tx);
2291 fiy1 = _mm256_add_ps(fiy1,ty);
2292 fiz1 = _mm256_add_ps(fiz1,tz);
2294 fjx0 = _mm256_add_ps(fjx0,tx);
2295 fjy0 = _mm256_add_ps(fjy0,ty);
2296 fjz0 = _mm256_add_ps(fjz0,tz);
2300 /**************************
2301 * CALCULATE INTERACTIONS *
2302 **************************/
2304 if (gmx_mm256_any_lt(rsq11,rcutoff2))
2307 r11 = _mm256_mul_ps(rsq11,rinv11);
2308 r11 = _mm256_andnot_ps(dummy_mask,r11);
2310 /* EWALD ELECTROSTATICS */
2312 /* Analytical PME correction */
2313 zeta2 = _mm256_mul_ps(beta2,rsq11);
2314 rinv3 = _mm256_mul_ps(rinvsq11,rinv11);
2315 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2316 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2317 felec = _mm256_mul_ps(qq11,felec);
2319 cutoff_mask = _mm256_cmp_ps(rsq11,rcutoff2,_CMP_LT_OQ);
2323 fscal = _mm256_and_ps(fscal,cutoff_mask);
2325 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2327 /* Calculate temporary vectorial force */
2328 tx = _mm256_mul_ps(fscal,dx11);
2329 ty = _mm256_mul_ps(fscal,dy11);
2330 tz = _mm256_mul_ps(fscal,dz11);
2332 /* Update vectorial force */
2333 fix1 = _mm256_add_ps(fix1,tx);
2334 fiy1 = _mm256_add_ps(fiy1,ty);
2335 fiz1 = _mm256_add_ps(fiz1,tz);
2337 fjx1 = _mm256_add_ps(fjx1,tx);
2338 fjy1 = _mm256_add_ps(fjy1,ty);
2339 fjz1 = _mm256_add_ps(fjz1,tz);
2343 /**************************
2344 * CALCULATE INTERACTIONS *
2345 **************************/
2347 if (gmx_mm256_any_lt(rsq12,rcutoff2))
2350 r12 = _mm256_mul_ps(rsq12,rinv12);
2351 r12 = _mm256_andnot_ps(dummy_mask,r12);
2353 /* EWALD ELECTROSTATICS */
2355 /* Analytical PME correction */
2356 zeta2 = _mm256_mul_ps(beta2,rsq12);
2357 rinv3 = _mm256_mul_ps(rinvsq12,rinv12);
2358 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2359 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2360 felec = _mm256_mul_ps(qq12,felec);
2362 cutoff_mask = _mm256_cmp_ps(rsq12,rcutoff2,_CMP_LT_OQ);
2366 fscal = _mm256_and_ps(fscal,cutoff_mask);
2368 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2370 /* Calculate temporary vectorial force */
2371 tx = _mm256_mul_ps(fscal,dx12);
2372 ty = _mm256_mul_ps(fscal,dy12);
2373 tz = _mm256_mul_ps(fscal,dz12);
2375 /* Update vectorial force */
2376 fix1 = _mm256_add_ps(fix1,tx);
2377 fiy1 = _mm256_add_ps(fiy1,ty);
2378 fiz1 = _mm256_add_ps(fiz1,tz);
2380 fjx2 = _mm256_add_ps(fjx2,tx);
2381 fjy2 = _mm256_add_ps(fjy2,ty);
2382 fjz2 = _mm256_add_ps(fjz2,tz);
2386 /**************************
2387 * CALCULATE INTERACTIONS *
2388 **************************/
2390 if (gmx_mm256_any_lt(rsq20,rcutoff2))
2393 r20 = _mm256_mul_ps(rsq20,rinv20);
2394 r20 = _mm256_andnot_ps(dummy_mask,r20);
2396 /* EWALD ELECTROSTATICS */
2398 /* Analytical PME correction */
2399 zeta2 = _mm256_mul_ps(beta2,rsq20);
2400 rinv3 = _mm256_mul_ps(rinvsq20,rinv20);
2401 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2402 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2403 felec = _mm256_mul_ps(qq20,felec);
2405 cutoff_mask = _mm256_cmp_ps(rsq20,rcutoff2,_CMP_LT_OQ);
2409 fscal = _mm256_and_ps(fscal,cutoff_mask);
2411 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2413 /* Calculate temporary vectorial force */
2414 tx = _mm256_mul_ps(fscal,dx20);
2415 ty = _mm256_mul_ps(fscal,dy20);
2416 tz = _mm256_mul_ps(fscal,dz20);
2418 /* Update vectorial force */
2419 fix2 = _mm256_add_ps(fix2,tx);
2420 fiy2 = _mm256_add_ps(fiy2,ty);
2421 fiz2 = _mm256_add_ps(fiz2,tz);
2423 fjx0 = _mm256_add_ps(fjx0,tx);
2424 fjy0 = _mm256_add_ps(fjy0,ty);
2425 fjz0 = _mm256_add_ps(fjz0,tz);
2429 /**************************
2430 * CALCULATE INTERACTIONS *
2431 **************************/
2433 if (gmx_mm256_any_lt(rsq21,rcutoff2))
2436 r21 = _mm256_mul_ps(rsq21,rinv21);
2437 r21 = _mm256_andnot_ps(dummy_mask,r21);
2439 /* EWALD ELECTROSTATICS */
2441 /* Analytical PME correction */
2442 zeta2 = _mm256_mul_ps(beta2,rsq21);
2443 rinv3 = _mm256_mul_ps(rinvsq21,rinv21);
2444 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2445 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2446 felec = _mm256_mul_ps(qq21,felec);
2448 cutoff_mask = _mm256_cmp_ps(rsq21,rcutoff2,_CMP_LT_OQ);
2452 fscal = _mm256_and_ps(fscal,cutoff_mask);
2454 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2456 /* Calculate temporary vectorial force */
2457 tx = _mm256_mul_ps(fscal,dx21);
2458 ty = _mm256_mul_ps(fscal,dy21);
2459 tz = _mm256_mul_ps(fscal,dz21);
2461 /* Update vectorial force */
2462 fix2 = _mm256_add_ps(fix2,tx);
2463 fiy2 = _mm256_add_ps(fiy2,ty);
2464 fiz2 = _mm256_add_ps(fiz2,tz);
2466 fjx1 = _mm256_add_ps(fjx1,tx);
2467 fjy1 = _mm256_add_ps(fjy1,ty);
2468 fjz1 = _mm256_add_ps(fjz1,tz);
2472 /**************************
2473 * CALCULATE INTERACTIONS *
2474 **************************/
2476 if (gmx_mm256_any_lt(rsq22,rcutoff2))
2479 r22 = _mm256_mul_ps(rsq22,rinv22);
2480 r22 = _mm256_andnot_ps(dummy_mask,r22);
2482 /* EWALD ELECTROSTATICS */
2484 /* Analytical PME correction */
2485 zeta2 = _mm256_mul_ps(beta2,rsq22);
2486 rinv3 = _mm256_mul_ps(rinvsq22,rinv22);
2487 pmecorrF = gmx_mm256_pmecorrF_ps(zeta2);
2488 felec = _mm256_add_ps( _mm256_mul_ps(pmecorrF,beta3), rinv3);
2489 felec = _mm256_mul_ps(qq22,felec);
2491 cutoff_mask = _mm256_cmp_ps(rsq22,rcutoff2,_CMP_LT_OQ);
2495 fscal = _mm256_and_ps(fscal,cutoff_mask);
2497 fscal = _mm256_andnot_ps(dummy_mask,fscal);
2499 /* Calculate temporary vectorial force */
2500 tx = _mm256_mul_ps(fscal,dx22);
2501 ty = _mm256_mul_ps(fscal,dy22);
2502 tz = _mm256_mul_ps(fscal,dz22);
2504 /* Update vectorial force */
2505 fix2 = _mm256_add_ps(fix2,tx);
2506 fiy2 = _mm256_add_ps(fiy2,ty);
2507 fiz2 = _mm256_add_ps(fiz2,tz);
2509 fjx2 = _mm256_add_ps(fjx2,tx);
2510 fjy2 = _mm256_add_ps(fjy2,ty);
2511 fjz2 = _mm256_add_ps(fjz2,tz);
2515 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
2516 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
2517 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
2518 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
2519 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
2520 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
2521 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
2522 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
2524 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
2525 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2527 /* Inner loop uses 540 flops */
2530 /* End of innermost loop */
2532 gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2533 f+i_coord_offset,fshift+i_shift_offset);
2535 /* Increment number of inner iterations */
2536 inneriter += j_index_end - j_index_start;
2538 /* Outer loop uses 18 flops */
2541 /* Increment number of outer iterations */
2544 /* Update outer/inner flops */
2546 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3W3_F,outeriter*18 + inneriter*540);