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36 * Note: this file was generated by the GROMACS avx_256_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_avx_256_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_256_single
51 * Electrostatics interaction: Coulomb
52 * VdW interaction: LennardJones
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_256_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrE,jnrF,jnrG,jnrH;
75 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
77 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
78 int j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
79 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
81 real *shiftvec,*fshift,*x,*f;
82 real *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
84 __m256 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
85 real * vdwioffsetptr0;
86 __m256 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
87 real * vdwioffsetptr1;
88 __m256 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
89 real * vdwioffsetptr2;
90 __m256 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
91 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
92 __m256 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
93 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
94 __m256 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
95 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
96 __m256 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
97 __m256 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
98 __m256 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
99 __m256 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
100 __m256 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
101 __m256 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
102 __m256 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
103 __m256 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
104 __m256 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
105 __m256 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
106 __m256 velec,felec,velecsum,facel,crf,krf,krf2;
109 __m256 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
112 __m256 one_sixth = _mm256_set1_ps(1.0/6.0);
113 __m256 one_twelfth = _mm256_set1_ps(1.0/12.0);
114 __m256 dummy_mask,cutoff_mask;
115 __m256 signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
116 __m256 one = _mm256_set1_ps(1.0);
117 __m256 two = _mm256_set1_ps(2.0);
123 jindex = nlist->jindex;
125 shiftidx = nlist->shift;
127 shiftvec = fr->shift_vec[0];
128 fshift = fr->fshift[0];
129 facel = _mm256_set1_ps(fr->ic->epsfac);
130 charge = mdatoms->chargeA;
131 nvdwtype = fr->ntype;
133 vdwtype = mdatoms->typeA;
135 /* Setup water-specific parameters */
136 inr = nlist->iinr[0];
137 iq0 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
138 iq1 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
139 iq2 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
140 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
142 jq0 = _mm256_set1_ps(charge[inr+0]);
143 jq1 = _mm256_set1_ps(charge[inr+1]);
144 jq2 = _mm256_set1_ps(charge[inr+2]);
145 vdwjidx0A = 2*vdwtype[inr+0];
146 qq00 = _mm256_mul_ps(iq0,jq0);
147 c6_00 = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
148 c12_00 = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
149 qq01 = _mm256_mul_ps(iq0,jq1);
150 qq02 = _mm256_mul_ps(iq0,jq2);
151 qq10 = _mm256_mul_ps(iq1,jq0);
152 qq11 = _mm256_mul_ps(iq1,jq1);
153 qq12 = _mm256_mul_ps(iq1,jq2);
154 qq20 = _mm256_mul_ps(iq2,jq0);
155 qq21 = _mm256_mul_ps(iq2,jq1);
156 qq22 = _mm256_mul_ps(iq2,jq2);
158 /* Avoid stupid compiler warnings */
159 jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
172 for(iidx=0;iidx<4*DIM;iidx++)
177 /* Start outer loop over neighborlists */
178 for(iidx=0; iidx<nri; iidx++)
180 /* Load shift vector for this list */
181 i_shift_offset = DIM*shiftidx[iidx];
183 /* Load limits for loop over neighbors */
184 j_index_start = jindex[iidx];
185 j_index_end = jindex[iidx+1];
187 /* Get outer coordinate index */
189 i_coord_offset = DIM*inr;
191 /* Load i particle coords and add shift vector */
192 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
193 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
195 fix0 = _mm256_setzero_ps();
196 fiy0 = _mm256_setzero_ps();
197 fiz0 = _mm256_setzero_ps();
198 fix1 = _mm256_setzero_ps();
199 fiy1 = _mm256_setzero_ps();
200 fiz1 = _mm256_setzero_ps();
201 fix2 = _mm256_setzero_ps();
202 fiy2 = _mm256_setzero_ps();
203 fiz2 = _mm256_setzero_ps();
205 /* Reset potential sums */
206 velecsum = _mm256_setzero_ps();
207 vvdwsum = _mm256_setzero_ps();
209 /* Start inner kernel loop */
210 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
213 /* Get j neighbor index, and coordinate index */
222 j_coord_offsetA = DIM*jnrA;
223 j_coord_offsetB = DIM*jnrB;
224 j_coord_offsetC = DIM*jnrC;
225 j_coord_offsetD = DIM*jnrD;
226 j_coord_offsetE = DIM*jnrE;
227 j_coord_offsetF = DIM*jnrF;
228 j_coord_offsetG = DIM*jnrG;
229 j_coord_offsetH = DIM*jnrH;
231 /* load j atom coordinates */
232 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
233 x+j_coord_offsetC,x+j_coord_offsetD,
234 x+j_coord_offsetE,x+j_coord_offsetF,
235 x+j_coord_offsetG,x+j_coord_offsetH,
236 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
238 /* Calculate displacement vector */
239 dx00 = _mm256_sub_ps(ix0,jx0);
240 dy00 = _mm256_sub_ps(iy0,jy0);
241 dz00 = _mm256_sub_ps(iz0,jz0);
242 dx01 = _mm256_sub_ps(ix0,jx1);
243 dy01 = _mm256_sub_ps(iy0,jy1);
244 dz01 = _mm256_sub_ps(iz0,jz1);
245 dx02 = _mm256_sub_ps(ix0,jx2);
246 dy02 = _mm256_sub_ps(iy0,jy2);
247 dz02 = _mm256_sub_ps(iz0,jz2);
248 dx10 = _mm256_sub_ps(ix1,jx0);
249 dy10 = _mm256_sub_ps(iy1,jy0);
250 dz10 = _mm256_sub_ps(iz1,jz0);
251 dx11 = _mm256_sub_ps(ix1,jx1);
252 dy11 = _mm256_sub_ps(iy1,jy1);
253 dz11 = _mm256_sub_ps(iz1,jz1);
254 dx12 = _mm256_sub_ps(ix1,jx2);
255 dy12 = _mm256_sub_ps(iy1,jy2);
256 dz12 = _mm256_sub_ps(iz1,jz2);
257 dx20 = _mm256_sub_ps(ix2,jx0);
258 dy20 = _mm256_sub_ps(iy2,jy0);
259 dz20 = _mm256_sub_ps(iz2,jz0);
260 dx21 = _mm256_sub_ps(ix2,jx1);
261 dy21 = _mm256_sub_ps(iy2,jy1);
262 dz21 = _mm256_sub_ps(iz2,jz1);
263 dx22 = _mm256_sub_ps(ix2,jx2);
264 dy22 = _mm256_sub_ps(iy2,jy2);
265 dz22 = _mm256_sub_ps(iz2,jz2);
267 /* Calculate squared distance and things based on it */
268 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
269 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
270 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
271 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
272 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
273 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
274 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
275 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
276 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
278 rinv00 = avx256_invsqrt_f(rsq00);
279 rinv01 = avx256_invsqrt_f(rsq01);
280 rinv02 = avx256_invsqrt_f(rsq02);
281 rinv10 = avx256_invsqrt_f(rsq10);
282 rinv11 = avx256_invsqrt_f(rsq11);
283 rinv12 = avx256_invsqrt_f(rsq12);
284 rinv20 = avx256_invsqrt_f(rsq20);
285 rinv21 = avx256_invsqrt_f(rsq21);
286 rinv22 = avx256_invsqrt_f(rsq22);
288 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
289 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
290 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
291 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
292 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
293 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
294 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
295 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
296 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
298 fjx0 = _mm256_setzero_ps();
299 fjy0 = _mm256_setzero_ps();
300 fjz0 = _mm256_setzero_ps();
301 fjx1 = _mm256_setzero_ps();
302 fjy1 = _mm256_setzero_ps();
303 fjz1 = _mm256_setzero_ps();
304 fjx2 = _mm256_setzero_ps();
305 fjy2 = _mm256_setzero_ps();
306 fjz2 = _mm256_setzero_ps();
308 /**************************
309 * CALCULATE INTERACTIONS *
310 **************************/
312 /* COULOMB ELECTROSTATICS */
313 velec = _mm256_mul_ps(qq00,rinv00);
314 felec = _mm256_mul_ps(velec,rinvsq00);
316 /* LENNARD-JONES DISPERSION/REPULSION */
318 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
319 vvdw6 = _mm256_mul_ps(c6_00,rinvsix);
320 vvdw12 = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
321 vvdw = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
322 fvdw = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
324 /* Update potential sum for this i atom from the interaction with this j atom. */
325 velecsum = _mm256_add_ps(velecsum,velec);
326 vvdwsum = _mm256_add_ps(vvdwsum,vvdw);
328 fscal = _mm256_add_ps(felec,fvdw);
330 /* Calculate temporary vectorial force */
331 tx = _mm256_mul_ps(fscal,dx00);
332 ty = _mm256_mul_ps(fscal,dy00);
333 tz = _mm256_mul_ps(fscal,dz00);
335 /* Update vectorial force */
336 fix0 = _mm256_add_ps(fix0,tx);
337 fiy0 = _mm256_add_ps(fiy0,ty);
338 fiz0 = _mm256_add_ps(fiz0,tz);
340 fjx0 = _mm256_add_ps(fjx0,tx);
341 fjy0 = _mm256_add_ps(fjy0,ty);
342 fjz0 = _mm256_add_ps(fjz0,tz);
344 /**************************
345 * CALCULATE INTERACTIONS *
346 **************************/
348 /* COULOMB ELECTROSTATICS */
349 velec = _mm256_mul_ps(qq01,rinv01);
350 felec = _mm256_mul_ps(velec,rinvsq01);
352 /* Update potential sum for this i atom from the interaction with this j atom. */
353 velecsum = _mm256_add_ps(velecsum,velec);
357 /* Calculate temporary vectorial force */
358 tx = _mm256_mul_ps(fscal,dx01);
359 ty = _mm256_mul_ps(fscal,dy01);
360 tz = _mm256_mul_ps(fscal,dz01);
362 /* Update vectorial force */
363 fix0 = _mm256_add_ps(fix0,tx);
364 fiy0 = _mm256_add_ps(fiy0,ty);
365 fiz0 = _mm256_add_ps(fiz0,tz);
367 fjx1 = _mm256_add_ps(fjx1,tx);
368 fjy1 = _mm256_add_ps(fjy1,ty);
369 fjz1 = _mm256_add_ps(fjz1,tz);
371 /**************************
372 * CALCULATE INTERACTIONS *
373 **************************/
375 /* COULOMB ELECTROSTATICS */
376 velec = _mm256_mul_ps(qq02,rinv02);
377 felec = _mm256_mul_ps(velec,rinvsq02);
379 /* Update potential sum for this i atom from the interaction with this j atom. */
380 velecsum = _mm256_add_ps(velecsum,velec);
384 /* Calculate temporary vectorial force */
385 tx = _mm256_mul_ps(fscal,dx02);
386 ty = _mm256_mul_ps(fscal,dy02);
387 tz = _mm256_mul_ps(fscal,dz02);
389 /* Update vectorial force */
390 fix0 = _mm256_add_ps(fix0,tx);
391 fiy0 = _mm256_add_ps(fiy0,ty);
392 fiz0 = _mm256_add_ps(fiz0,tz);
394 fjx2 = _mm256_add_ps(fjx2,tx);
395 fjy2 = _mm256_add_ps(fjy2,ty);
396 fjz2 = _mm256_add_ps(fjz2,tz);
398 /**************************
399 * CALCULATE INTERACTIONS *
400 **************************/
402 /* COULOMB ELECTROSTATICS */
403 velec = _mm256_mul_ps(qq10,rinv10);
404 felec = _mm256_mul_ps(velec,rinvsq10);
406 /* Update potential sum for this i atom from the interaction with this j atom. */
407 velecsum = _mm256_add_ps(velecsum,velec);
411 /* Calculate temporary vectorial force */
412 tx = _mm256_mul_ps(fscal,dx10);
413 ty = _mm256_mul_ps(fscal,dy10);
414 tz = _mm256_mul_ps(fscal,dz10);
416 /* Update vectorial force */
417 fix1 = _mm256_add_ps(fix1,tx);
418 fiy1 = _mm256_add_ps(fiy1,ty);
419 fiz1 = _mm256_add_ps(fiz1,tz);
421 fjx0 = _mm256_add_ps(fjx0,tx);
422 fjy0 = _mm256_add_ps(fjy0,ty);
423 fjz0 = _mm256_add_ps(fjz0,tz);
425 /**************************
426 * CALCULATE INTERACTIONS *
427 **************************/
429 /* COULOMB ELECTROSTATICS */
430 velec = _mm256_mul_ps(qq11,rinv11);
431 felec = _mm256_mul_ps(velec,rinvsq11);
433 /* Update potential sum for this i atom from the interaction with this j atom. */
434 velecsum = _mm256_add_ps(velecsum,velec);
438 /* Calculate temporary vectorial force */
439 tx = _mm256_mul_ps(fscal,dx11);
440 ty = _mm256_mul_ps(fscal,dy11);
441 tz = _mm256_mul_ps(fscal,dz11);
443 /* Update vectorial force */
444 fix1 = _mm256_add_ps(fix1,tx);
445 fiy1 = _mm256_add_ps(fiy1,ty);
446 fiz1 = _mm256_add_ps(fiz1,tz);
448 fjx1 = _mm256_add_ps(fjx1,tx);
449 fjy1 = _mm256_add_ps(fjy1,ty);
450 fjz1 = _mm256_add_ps(fjz1,tz);
452 /**************************
453 * CALCULATE INTERACTIONS *
454 **************************/
456 /* COULOMB ELECTROSTATICS */
457 velec = _mm256_mul_ps(qq12,rinv12);
458 felec = _mm256_mul_ps(velec,rinvsq12);
460 /* Update potential sum for this i atom from the interaction with this j atom. */
461 velecsum = _mm256_add_ps(velecsum,velec);
465 /* Calculate temporary vectorial force */
466 tx = _mm256_mul_ps(fscal,dx12);
467 ty = _mm256_mul_ps(fscal,dy12);
468 tz = _mm256_mul_ps(fscal,dz12);
470 /* Update vectorial force */
471 fix1 = _mm256_add_ps(fix1,tx);
472 fiy1 = _mm256_add_ps(fiy1,ty);
473 fiz1 = _mm256_add_ps(fiz1,tz);
475 fjx2 = _mm256_add_ps(fjx2,tx);
476 fjy2 = _mm256_add_ps(fjy2,ty);
477 fjz2 = _mm256_add_ps(fjz2,tz);
479 /**************************
480 * CALCULATE INTERACTIONS *
481 **************************/
483 /* COULOMB ELECTROSTATICS */
484 velec = _mm256_mul_ps(qq20,rinv20);
485 felec = _mm256_mul_ps(velec,rinvsq20);
487 /* Update potential sum for this i atom from the interaction with this j atom. */
488 velecsum = _mm256_add_ps(velecsum,velec);
492 /* Calculate temporary vectorial force */
493 tx = _mm256_mul_ps(fscal,dx20);
494 ty = _mm256_mul_ps(fscal,dy20);
495 tz = _mm256_mul_ps(fscal,dz20);
497 /* Update vectorial force */
498 fix2 = _mm256_add_ps(fix2,tx);
499 fiy2 = _mm256_add_ps(fiy2,ty);
500 fiz2 = _mm256_add_ps(fiz2,tz);
502 fjx0 = _mm256_add_ps(fjx0,tx);
503 fjy0 = _mm256_add_ps(fjy0,ty);
504 fjz0 = _mm256_add_ps(fjz0,tz);
506 /**************************
507 * CALCULATE INTERACTIONS *
508 **************************/
510 /* COULOMB ELECTROSTATICS */
511 velec = _mm256_mul_ps(qq21,rinv21);
512 felec = _mm256_mul_ps(velec,rinvsq21);
514 /* Update potential sum for this i atom from the interaction with this j atom. */
515 velecsum = _mm256_add_ps(velecsum,velec);
519 /* Calculate temporary vectorial force */
520 tx = _mm256_mul_ps(fscal,dx21);
521 ty = _mm256_mul_ps(fscal,dy21);
522 tz = _mm256_mul_ps(fscal,dz21);
524 /* Update vectorial force */
525 fix2 = _mm256_add_ps(fix2,tx);
526 fiy2 = _mm256_add_ps(fiy2,ty);
527 fiz2 = _mm256_add_ps(fiz2,tz);
529 fjx1 = _mm256_add_ps(fjx1,tx);
530 fjy1 = _mm256_add_ps(fjy1,ty);
531 fjz1 = _mm256_add_ps(fjz1,tz);
533 /**************************
534 * CALCULATE INTERACTIONS *
535 **************************/
537 /* COULOMB ELECTROSTATICS */
538 velec = _mm256_mul_ps(qq22,rinv22);
539 felec = _mm256_mul_ps(velec,rinvsq22);
541 /* Update potential sum for this i atom from the interaction with this j atom. */
542 velecsum = _mm256_add_ps(velecsum,velec);
546 /* Calculate temporary vectorial force */
547 tx = _mm256_mul_ps(fscal,dx22);
548 ty = _mm256_mul_ps(fscal,dy22);
549 tz = _mm256_mul_ps(fscal,dz22);
551 /* Update vectorial force */
552 fix2 = _mm256_add_ps(fix2,tx);
553 fiy2 = _mm256_add_ps(fiy2,ty);
554 fiz2 = _mm256_add_ps(fiz2,tz);
556 fjx2 = _mm256_add_ps(fjx2,tx);
557 fjy2 = _mm256_add_ps(fjy2,ty);
558 fjz2 = _mm256_add_ps(fjz2,tz);
560 fjptrA = f+j_coord_offsetA;
561 fjptrB = f+j_coord_offsetB;
562 fjptrC = f+j_coord_offsetC;
563 fjptrD = f+j_coord_offsetD;
564 fjptrE = f+j_coord_offsetE;
565 fjptrF = f+j_coord_offsetF;
566 fjptrG = f+j_coord_offsetG;
567 fjptrH = f+j_coord_offsetH;
569 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
570 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
572 /* Inner loop uses 255 flops */
578 /* Get j neighbor index, and coordinate index */
579 jnrlistA = jjnr[jidx];
580 jnrlistB = jjnr[jidx+1];
581 jnrlistC = jjnr[jidx+2];
582 jnrlistD = jjnr[jidx+3];
583 jnrlistE = jjnr[jidx+4];
584 jnrlistF = jjnr[jidx+5];
585 jnrlistG = jjnr[jidx+6];
586 jnrlistH = jjnr[jidx+7];
587 /* Sign of each element will be negative for non-real atoms.
588 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
589 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
591 dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
592 gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
594 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
595 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
596 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
597 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
598 jnrE = (jnrlistE>=0) ? jnrlistE : 0;
599 jnrF = (jnrlistF>=0) ? jnrlistF : 0;
600 jnrG = (jnrlistG>=0) ? jnrlistG : 0;
601 jnrH = (jnrlistH>=0) ? jnrlistH : 0;
602 j_coord_offsetA = DIM*jnrA;
603 j_coord_offsetB = DIM*jnrB;
604 j_coord_offsetC = DIM*jnrC;
605 j_coord_offsetD = DIM*jnrD;
606 j_coord_offsetE = DIM*jnrE;
607 j_coord_offsetF = DIM*jnrF;
608 j_coord_offsetG = DIM*jnrG;
609 j_coord_offsetH = DIM*jnrH;
611 /* load j atom coordinates */
612 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
613 x+j_coord_offsetC,x+j_coord_offsetD,
614 x+j_coord_offsetE,x+j_coord_offsetF,
615 x+j_coord_offsetG,x+j_coord_offsetH,
616 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
618 /* Calculate displacement vector */
619 dx00 = _mm256_sub_ps(ix0,jx0);
620 dy00 = _mm256_sub_ps(iy0,jy0);
621 dz00 = _mm256_sub_ps(iz0,jz0);
622 dx01 = _mm256_sub_ps(ix0,jx1);
623 dy01 = _mm256_sub_ps(iy0,jy1);
624 dz01 = _mm256_sub_ps(iz0,jz1);
625 dx02 = _mm256_sub_ps(ix0,jx2);
626 dy02 = _mm256_sub_ps(iy0,jy2);
627 dz02 = _mm256_sub_ps(iz0,jz2);
628 dx10 = _mm256_sub_ps(ix1,jx0);
629 dy10 = _mm256_sub_ps(iy1,jy0);
630 dz10 = _mm256_sub_ps(iz1,jz0);
631 dx11 = _mm256_sub_ps(ix1,jx1);
632 dy11 = _mm256_sub_ps(iy1,jy1);
633 dz11 = _mm256_sub_ps(iz1,jz1);
634 dx12 = _mm256_sub_ps(ix1,jx2);
635 dy12 = _mm256_sub_ps(iy1,jy2);
636 dz12 = _mm256_sub_ps(iz1,jz2);
637 dx20 = _mm256_sub_ps(ix2,jx0);
638 dy20 = _mm256_sub_ps(iy2,jy0);
639 dz20 = _mm256_sub_ps(iz2,jz0);
640 dx21 = _mm256_sub_ps(ix2,jx1);
641 dy21 = _mm256_sub_ps(iy2,jy1);
642 dz21 = _mm256_sub_ps(iz2,jz1);
643 dx22 = _mm256_sub_ps(ix2,jx2);
644 dy22 = _mm256_sub_ps(iy2,jy2);
645 dz22 = _mm256_sub_ps(iz2,jz2);
647 /* Calculate squared distance and things based on it */
648 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
649 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
650 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
651 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
652 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
653 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
654 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
655 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
656 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
658 rinv00 = avx256_invsqrt_f(rsq00);
659 rinv01 = avx256_invsqrt_f(rsq01);
660 rinv02 = avx256_invsqrt_f(rsq02);
661 rinv10 = avx256_invsqrt_f(rsq10);
662 rinv11 = avx256_invsqrt_f(rsq11);
663 rinv12 = avx256_invsqrt_f(rsq12);
664 rinv20 = avx256_invsqrt_f(rsq20);
665 rinv21 = avx256_invsqrt_f(rsq21);
666 rinv22 = avx256_invsqrt_f(rsq22);
668 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
669 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
670 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
671 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
672 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
673 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
674 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
675 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
676 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
678 fjx0 = _mm256_setzero_ps();
679 fjy0 = _mm256_setzero_ps();
680 fjz0 = _mm256_setzero_ps();
681 fjx1 = _mm256_setzero_ps();
682 fjy1 = _mm256_setzero_ps();
683 fjz1 = _mm256_setzero_ps();
684 fjx2 = _mm256_setzero_ps();
685 fjy2 = _mm256_setzero_ps();
686 fjz2 = _mm256_setzero_ps();
688 /**************************
689 * CALCULATE INTERACTIONS *
690 **************************/
692 /* COULOMB ELECTROSTATICS */
693 velec = _mm256_mul_ps(qq00,rinv00);
694 felec = _mm256_mul_ps(velec,rinvsq00);
696 /* LENNARD-JONES DISPERSION/REPULSION */
698 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
699 vvdw6 = _mm256_mul_ps(c6_00,rinvsix);
700 vvdw12 = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
701 vvdw = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
702 fvdw = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
704 /* Update potential sum for this i atom from the interaction with this j atom. */
705 velec = _mm256_andnot_ps(dummy_mask,velec);
706 velecsum = _mm256_add_ps(velecsum,velec);
707 vvdw = _mm256_andnot_ps(dummy_mask,vvdw);
708 vvdwsum = _mm256_add_ps(vvdwsum,vvdw);
710 fscal = _mm256_add_ps(felec,fvdw);
712 fscal = _mm256_andnot_ps(dummy_mask,fscal);
714 /* Calculate temporary vectorial force */
715 tx = _mm256_mul_ps(fscal,dx00);
716 ty = _mm256_mul_ps(fscal,dy00);
717 tz = _mm256_mul_ps(fscal,dz00);
719 /* Update vectorial force */
720 fix0 = _mm256_add_ps(fix0,tx);
721 fiy0 = _mm256_add_ps(fiy0,ty);
722 fiz0 = _mm256_add_ps(fiz0,tz);
724 fjx0 = _mm256_add_ps(fjx0,tx);
725 fjy0 = _mm256_add_ps(fjy0,ty);
726 fjz0 = _mm256_add_ps(fjz0,tz);
728 /**************************
729 * CALCULATE INTERACTIONS *
730 **************************/
732 /* COULOMB ELECTROSTATICS */
733 velec = _mm256_mul_ps(qq01,rinv01);
734 felec = _mm256_mul_ps(velec,rinvsq01);
736 /* Update potential sum for this i atom from the interaction with this j atom. */
737 velec = _mm256_andnot_ps(dummy_mask,velec);
738 velecsum = _mm256_add_ps(velecsum,velec);
742 fscal = _mm256_andnot_ps(dummy_mask,fscal);
744 /* Calculate temporary vectorial force */
745 tx = _mm256_mul_ps(fscal,dx01);
746 ty = _mm256_mul_ps(fscal,dy01);
747 tz = _mm256_mul_ps(fscal,dz01);
749 /* Update vectorial force */
750 fix0 = _mm256_add_ps(fix0,tx);
751 fiy0 = _mm256_add_ps(fiy0,ty);
752 fiz0 = _mm256_add_ps(fiz0,tz);
754 fjx1 = _mm256_add_ps(fjx1,tx);
755 fjy1 = _mm256_add_ps(fjy1,ty);
756 fjz1 = _mm256_add_ps(fjz1,tz);
758 /**************************
759 * CALCULATE INTERACTIONS *
760 **************************/
762 /* COULOMB ELECTROSTATICS */
763 velec = _mm256_mul_ps(qq02,rinv02);
764 felec = _mm256_mul_ps(velec,rinvsq02);
766 /* Update potential sum for this i atom from the interaction with this j atom. */
767 velec = _mm256_andnot_ps(dummy_mask,velec);
768 velecsum = _mm256_add_ps(velecsum,velec);
772 fscal = _mm256_andnot_ps(dummy_mask,fscal);
774 /* Calculate temporary vectorial force */
775 tx = _mm256_mul_ps(fscal,dx02);
776 ty = _mm256_mul_ps(fscal,dy02);
777 tz = _mm256_mul_ps(fscal,dz02);
779 /* Update vectorial force */
780 fix0 = _mm256_add_ps(fix0,tx);
781 fiy0 = _mm256_add_ps(fiy0,ty);
782 fiz0 = _mm256_add_ps(fiz0,tz);
784 fjx2 = _mm256_add_ps(fjx2,tx);
785 fjy2 = _mm256_add_ps(fjy2,ty);
786 fjz2 = _mm256_add_ps(fjz2,tz);
788 /**************************
789 * CALCULATE INTERACTIONS *
790 **************************/
792 /* COULOMB ELECTROSTATICS */
793 velec = _mm256_mul_ps(qq10,rinv10);
794 felec = _mm256_mul_ps(velec,rinvsq10);
796 /* Update potential sum for this i atom from the interaction with this j atom. */
797 velec = _mm256_andnot_ps(dummy_mask,velec);
798 velecsum = _mm256_add_ps(velecsum,velec);
802 fscal = _mm256_andnot_ps(dummy_mask,fscal);
804 /* Calculate temporary vectorial force */
805 tx = _mm256_mul_ps(fscal,dx10);
806 ty = _mm256_mul_ps(fscal,dy10);
807 tz = _mm256_mul_ps(fscal,dz10);
809 /* Update vectorial force */
810 fix1 = _mm256_add_ps(fix1,tx);
811 fiy1 = _mm256_add_ps(fiy1,ty);
812 fiz1 = _mm256_add_ps(fiz1,tz);
814 fjx0 = _mm256_add_ps(fjx0,tx);
815 fjy0 = _mm256_add_ps(fjy0,ty);
816 fjz0 = _mm256_add_ps(fjz0,tz);
818 /**************************
819 * CALCULATE INTERACTIONS *
820 **************************/
822 /* COULOMB ELECTROSTATICS */
823 velec = _mm256_mul_ps(qq11,rinv11);
824 felec = _mm256_mul_ps(velec,rinvsq11);
826 /* Update potential sum for this i atom from the interaction with this j atom. */
827 velec = _mm256_andnot_ps(dummy_mask,velec);
828 velecsum = _mm256_add_ps(velecsum,velec);
832 fscal = _mm256_andnot_ps(dummy_mask,fscal);
834 /* Calculate temporary vectorial force */
835 tx = _mm256_mul_ps(fscal,dx11);
836 ty = _mm256_mul_ps(fscal,dy11);
837 tz = _mm256_mul_ps(fscal,dz11);
839 /* Update vectorial force */
840 fix1 = _mm256_add_ps(fix1,tx);
841 fiy1 = _mm256_add_ps(fiy1,ty);
842 fiz1 = _mm256_add_ps(fiz1,tz);
844 fjx1 = _mm256_add_ps(fjx1,tx);
845 fjy1 = _mm256_add_ps(fjy1,ty);
846 fjz1 = _mm256_add_ps(fjz1,tz);
848 /**************************
849 * CALCULATE INTERACTIONS *
850 **************************/
852 /* COULOMB ELECTROSTATICS */
853 velec = _mm256_mul_ps(qq12,rinv12);
854 felec = _mm256_mul_ps(velec,rinvsq12);
856 /* Update potential sum for this i atom from the interaction with this j atom. */
857 velec = _mm256_andnot_ps(dummy_mask,velec);
858 velecsum = _mm256_add_ps(velecsum,velec);
862 fscal = _mm256_andnot_ps(dummy_mask,fscal);
864 /* Calculate temporary vectorial force */
865 tx = _mm256_mul_ps(fscal,dx12);
866 ty = _mm256_mul_ps(fscal,dy12);
867 tz = _mm256_mul_ps(fscal,dz12);
869 /* Update vectorial force */
870 fix1 = _mm256_add_ps(fix1,tx);
871 fiy1 = _mm256_add_ps(fiy1,ty);
872 fiz1 = _mm256_add_ps(fiz1,tz);
874 fjx2 = _mm256_add_ps(fjx2,tx);
875 fjy2 = _mm256_add_ps(fjy2,ty);
876 fjz2 = _mm256_add_ps(fjz2,tz);
878 /**************************
879 * CALCULATE INTERACTIONS *
880 **************************/
882 /* COULOMB ELECTROSTATICS */
883 velec = _mm256_mul_ps(qq20,rinv20);
884 felec = _mm256_mul_ps(velec,rinvsq20);
886 /* Update potential sum for this i atom from the interaction with this j atom. */
887 velec = _mm256_andnot_ps(dummy_mask,velec);
888 velecsum = _mm256_add_ps(velecsum,velec);
892 fscal = _mm256_andnot_ps(dummy_mask,fscal);
894 /* Calculate temporary vectorial force */
895 tx = _mm256_mul_ps(fscal,dx20);
896 ty = _mm256_mul_ps(fscal,dy20);
897 tz = _mm256_mul_ps(fscal,dz20);
899 /* Update vectorial force */
900 fix2 = _mm256_add_ps(fix2,tx);
901 fiy2 = _mm256_add_ps(fiy2,ty);
902 fiz2 = _mm256_add_ps(fiz2,tz);
904 fjx0 = _mm256_add_ps(fjx0,tx);
905 fjy0 = _mm256_add_ps(fjy0,ty);
906 fjz0 = _mm256_add_ps(fjz0,tz);
908 /**************************
909 * CALCULATE INTERACTIONS *
910 **************************/
912 /* COULOMB ELECTROSTATICS */
913 velec = _mm256_mul_ps(qq21,rinv21);
914 felec = _mm256_mul_ps(velec,rinvsq21);
916 /* Update potential sum for this i atom from the interaction with this j atom. */
917 velec = _mm256_andnot_ps(dummy_mask,velec);
918 velecsum = _mm256_add_ps(velecsum,velec);
922 fscal = _mm256_andnot_ps(dummy_mask,fscal);
924 /* Calculate temporary vectorial force */
925 tx = _mm256_mul_ps(fscal,dx21);
926 ty = _mm256_mul_ps(fscal,dy21);
927 tz = _mm256_mul_ps(fscal,dz21);
929 /* Update vectorial force */
930 fix2 = _mm256_add_ps(fix2,tx);
931 fiy2 = _mm256_add_ps(fiy2,ty);
932 fiz2 = _mm256_add_ps(fiz2,tz);
934 fjx1 = _mm256_add_ps(fjx1,tx);
935 fjy1 = _mm256_add_ps(fjy1,ty);
936 fjz1 = _mm256_add_ps(fjz1,tz);
938 /**************************
939 * CALCULATE INTERACTIONS *
940 **************************/
942 /* COULOMB ELECTROSTATICS */
943 velec = _mm256_mul_ps(qq22,rinv22);
944 felec = _mm256_mul_ps(velec,rinvsq22);
946 /* Update potential sum for this i atom from the interaction with this j atom. */
947 velec = _mm256_andnot_ps(dummy_mask,velec);
948 velecsum = _mm256_add_ps(velecsum,velec);
952 fscal = _mm256_andnot_ps(dummy_mask,fscal);
954 /* Calculate temporary vectorial force */
955 tx = _mm256_mul_ps(fscal,dx22);
956 ty = _mm256_mul_ps(fscal,dy22);
957 tz = _mm256_mul_ps(fscal,dz22);
959 /* Update vectorial force */
960 fix2 = _mm256_add_ps(fix2,tx);
961 fiy2 = _mm256_add_ps(fiy2,ty);
962 fiz2 = _mm256_add_ps(fiz2,tz);
964 fjx2 = _mm256_add_ps(fjx2,tx);
965 fjy2 = _mm256_add_ps(fjy2,ty);
966 fjz2 = _mm256_add_ps(fjz2,tz);
968 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
969 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
970 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
971 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
972 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
973 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
974 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
975 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
977 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
978 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
980 /* Inner loop uses 255 flops */
983 /* End of innermost loop */
985 gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
986 f+i_coord_offset,fshift+i_shift_offset);
989 /* Update potential energies */
990 gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
991 gmx_mm256_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
993 /* Increment number of inner iterations */
994 inneriter += j_index_end - j_index_start;
996 /* Outer loop uses 20 flops */
999 /* Increment number of outer iterations */
1002 /* Update outer/inner flops */
1004 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*255);
1007 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_256_single
1008 * Electrostatics interaction: Coulomb
1009 * VdW interaction: LennardJones
1010 * Geometry: Water3-Water3
1011 * Calculate force/pot: Force
1014 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_256_single
1015 (t_nblist * gmx_restrict nlist,
1016 rvec * gmx_restrict xx,
1017 rvec * gmx_restrict ff,
1018 struct t_forcerec * gmx_restrict fr,
1019 t_mdatoms * gmx_restrict mdatoms,
1020 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1021 t_nrnb * gmx_restrict nrnb)
1023 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1024 * just 0 for non-waters.
1025 * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
1026 * jnr indices corresponding to data put in the four positions in the SIMD register.
1028 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1029 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1030 int jnrA,jnrB,jnrC,jnrD;
1031 int jnrE,jnrF,jnrG,jnrH;
1032 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1033 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1034 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1035 int j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
1036 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1037 real rcutoff_scalar;
1038 real *shiftvec,*fshift,*x,*f;
1039 real *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
1040 real scratch[4*DIM];
1041 __m256 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1042 real * vdwioffsetptr0;
1043 __m256 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1044 real * vdwioffsetptr1;
1045 __m256 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1046 real * vdwioffsetptr2;
1047 __m256 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1048 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
1049 __m256 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1050 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
1051 __m256 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1052 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
1053 __m256 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1054 __m256 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1055 __m256 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1056 __m256 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1057 __m256 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1058 __m256 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1059 __m256 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1060 __m256 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1061 __m256 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1062 __m256 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1063 __m256 velec,felec,velecsum,facel,crf,krf,krf2;
1066 __m256 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1069 __m256 one_sixth = _mm256_set1_ps(1.0/6.0);
1070 __m256 one_twelfth = _mm256_set1_ps(1.0/12.0);
1071 __m256 dummy_mask,cutoff_mask;
1072 __m256 signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
1073 __m256 one = _mm256_set1_ps(1.0);
1074 __m256 two = _mm256_set1_ps(2.0);
1080 jindex = nlist->jindex;
1082 shiftidx = nlist->shift;
1084 shiftvec = fr->shift_vec[0];
1085 fshift = fr->fshift[0];
1086 facel = _mm256_set1_ps(fr->ic->epsfac);
1087 charge = mdatoms->chargeA;
1088 nvdwtype = fr->ntype;
1089 vdwparam = fr->nbfp;
1090 vdwtype = mdatoms->typeA;
1092 /* Setup water-specific parameters */
1093 inr = nlist->iinr[0];
1094 iq0 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
1095 iq1 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
1096 iq2 = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
1097 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
1099 jq0 = _mm256_set1_ps(charge[inr+0]);
1100 jq1 = _mm256_set1_ps(charge[inr+1]);
1101 jq2 = _mm256_set1_ps(charge[inr+2]);
1102 vdwjidx0A = 2*vdwtype[inr+0];
1103 qq00 = _mm256_mul_ps(iq0,jq0);
1104 c6_00 = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
1105 c12_00 = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
1106 qq01 = _mm256_mul_ps(iq0,jq1);
1107 qq02 = _mm256_mul_ps(iq0,jq2);
1108 qq10 = _mm256_mul_ps(iq1,jq0);
1109 qq11 = _mm256_mul_ps(iq1,jq1);
1110 qq12 = _mm256_mul_ps(iq1,jq2);
1111 qq20 = _mm256_mul_ps(iq2,jq0);
1112 qq21 = _mm256_mul_ps(iq2,jq1);
1113 qq22 = _mm256_mul_ps(iq2,jq2);
1115 /* Avoid stupid compiler warnings */
1116 jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
1117 j_coord_offsetA = 0;
1118 j_coord_offsetB = 0;
1119 j_coord_offsetC = 0;
1120 j_coord_offsetD = 0;
1121 j_coord_offsetE = 0;
1122 j_coord_offsetF = 0;
1123 j_coord_offsetG = 0;
1124 j_coord_offsetH = 0;
1129 for(iidx=0;iidx<4*DIM;iidx++)
1131 scratch[iidx] = 0.0;
1134 /* Start outer loop over neighborlists */
1135 for(iidx=0; iidx<nri; iidx++)
1137 /* Load shift vector for this list */
1138 i_shift_offset = DIM*shiftidx[iidx];
1140 /* Load limits for loop over neighbors */
1141 j_index_start = jindex[iidx];
1142 j_index_end = jindex[iidx+1];
1144 /* Get outer coordinate index */
1146 i_coord_offset = DIM*inr;
1148 /* Load i particle coords and add shift vector */
1149 gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1150 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1152 fix0 = _mm256_setzero_ps();
1153 fiy0 = _mm256_setzero_ps();
1154 fiz0 = _mm256_setzero_ps();
1155 fix1 = _mm256_setzero_ps();
1156 fiy1 = _mm256_setzero_ps();
1157 fiz1 = _mm256_setzero_ps();
1158 fix2 = _mm256_setzero_ps();
1159 fiy2 = _mm256_setzero_ps();
1160 fiz2 = _mm256_setzero_ps();
1162 /* Start inner kernel loop */
1163 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
1166 /* Get j neighbor index, and coordinate index */
1168 jnrB = jjnr[jidx+1];
1169 jnrC = jjnr[jidx+2];
1170 jnrD = jjnr[jidx+3];
1171 jnrE = jjnr[jidx+4];
1172 jnrF = jjnr[jidx+5];
1173 jnrG = jjnr[jidx+6];
1174 jnrH = jjnr[jidx+7];
1175 j_coord_offsetA = DIM*jnrA;
1176 j_coord_offsetB = DIM*jnrB;
1177 j_coord_offsetC = DIM*jnrC;
1178 j_coord_offsetD = DIM*jnrD;
1179 j_coord_offsetE = DIM*jnrE;
1180 j_coord_offsetF = DIM*jnrF;
1181 j_coord_offsetG = DIM*jnrG;
1182 j_coord_offsetH = DIM*jnrH;
1184 /* load j atom coordinates */
1185 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1186 x+j_coord_offsetC,x+j_coord_offsetD,
1187 x+j_coord_offsetE,x+j_coord_offsetF,
1188 x+j_coord_offsetG,x+j_coord_offsetH,
1189 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1191 /* Calculate displacement vector */
1192 dx00 = _mm256_sub_ps(ix0,jx0);
1193 dy00 = _mm256_sub_ps(iy0,jy0);
1194 dz00 = _mm256_sub_ps(iz0,jz0);
1195 dx01 = _mm256_sub_ps(ix0,jx1);
1196 dy01 = _mm256_sub_ps(iy0,jy1);
1197 dz01 = _mm256_sub_ps(iz0,jz1);
1198 dx02 = _mm256_sub_ps(ix0,jx2);
1199 dy02 = _mm256_sub_ps(iy0,jy2);
1200 dz02 = _mm256_sub_ps(iz0,jz2);
1201 dx10 = _mm256_sub_ps(ix1,jx0);
1202 dy10 = _mm256_sub_ps(iy1,jy0);
1203 dz10 = _mm256_sub_ps(iz1,jz0);
1204 dx11 = _mm256_sub_ps(ix1,jx1);
1205 dy11 = _mm256_sub_ps(iy1,jy1);
1206 dz11 = _mm256_sub_ps(iz1,jz1);
1207 dx12 = _mm256_sub_ps(ix1,jx2);
1208 dy12 = _mm256_sub_ps(iy1,jy2);
1209 dz12 = _mm256_sub_ps(iz1,jz2);
1210 dx20 = _mm256_sub_ps(ix2,jx0);
1211 dy20 = _mm256_sub_ps(iy2,jy0);
1212 dz20 = _mm256_sub_ps(iz2,jz0);
1213 dx21 = _mm256_sub_ps(ix2,jx1);
1214 dy21 = _mm256_sub_ps(iy2,jy1);
1215 dz21 = _mm256_sub_ps(iz2,jz1);
1216 dx22 = _mm256_sub_ps(ix2,jx2);
1217 dy22 = _mm256_sub_ps(iy2,jy2);
1218 dz22 = _mm256_sub_ps(iz2,jz2);
1220 /* Calculate squared distance and things based on it */
1221 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1222 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1223 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1224 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1225 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1226 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1227 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1228 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1229 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1231 rinv00 = avx256_invsqrt_f(rsq00);
1232 rinv01 = avx256_invsqrt_f(rsq01);
1233 rinv02 = avx256_invsqrt_f(rsq02);
1234 rinv10 = avx256_invsqrt_f(rsq10);
1235 rinv11 = avx256_invsqrt_f(rsq11);
1236 rinv12 = avx256_invsqrt_f(rsq12);
1237 rinv20 = avx256_invsqrt_f(rsq20);
1238 rinv21 = avx256_invsqrt_f(rsq21);
1239 rinv22 = avx256_invsqrt_f(rsq22);
1241 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
1242 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
1243 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
1244 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
1245 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
1246 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
1247 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
1248 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
1249 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
1251 fjx0 = _mm256_setzero_ps();
1252 fjy0 = _mm256_setzero_ps();
1253 fjz0 = _mm256_setzero_ps();
1254 fjx1 = _mm256_setzero_ps();
1255 fjy1 = _mm256_setzero_ps();
1256 fjz1 = _mm256_setzero_ps();
1257 fjx2 = _mm256_setzero_ps();
1258 fjy2 = _mm256_setzero_ps();
1259 fjz2 = _mm256_setzero_ps();
1261 /**************************
1262 * CALCULATE INTERACTIONS *
1263 **************************/
1265 /* COULOMB ELECTROSTATICS */
1266 velec = _mm256_mul_ps(qq00,rinv00);
1267 felec = _mm256_mul_ps(velec,rinvsq00);
1269 /* LENNARD-JONES DISPERSION/REPULSION */
1271 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1272 fvdw = _mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_00,rinvsix),c6_00),_mm256_mul_ps(rinvsix,rinvsq00));
1274 fscal = _mm256_add_ps(felec,fvdw);
1276 /* Calculate temporary vectorial force */
1277 tx = _mm256_mul_ps(fscal,dx00);
1278 ty = _mm256_mul_ps(fscal,dy00);
1279 tz = _mm256_mul_ps(fscal,dz00);
1281 /* Update vectorial force */
1282 fix0 = _mm256_add_ps(fix0,tx);
1283 fiy0 = _mm256_add_ps(fiy0,ty);
1284 fiz0 = _mm256_add_ps(fiz0,tz);
1286 fjx0 = _mm256_add_ps(fjx0,tx);
1287 fjy0 = _mm256_add_ps(fjy0,ty);
1288 fjz0 = _mm256_add_ps(fjz0,tz);
1290 /**************************
1291 * CALCULATE INTERACTIONS *
1292 **************************/
1294 /* COULOMB ELECTROSTATICS */
1295 velec = _mm256_mul_ps(qq01,rinv01);
1296 felec = _mm256_mul_ps(velec,rinvsq01);
1300 /* Calculate temporary vectorial force */
1301 tx = _mm256_mul_ps(fscal,dx01);
1302 ty = _mm256_mul_ps(fscal,dy01);
1303 tz = _mm256_mul_ps(fscal,dz01);
1305 /* Update vectorial force */
1306 fix0 = _mm256_add_ps(fix0,tx);
1307 fiy0 = _mm256_add_ps(fiy0,ty);
1308 fiz0 = _mm256_add_ps(fiz0,tz);
1310 fjx1 = _mm256_add_ps(fjx1,tx);
1311 fjy1 = _mm256_add_ps(fjy1,ty);
1312 fjz1 = _mm256_add_ps(fjz1,tz);
1314 /**************************
1315 * CALCULATE INTERACTIONS *
1316 **************************/
1318 /* COULOMB ELECTROSTATICS */
1319 velec = _mm256_mul_ps(qq02,rinv02);
1320 felec = _mm256_mul_ps(velec,rinvsq02);
1324 /* Calculate temporary vectorial force */
1325 tx = _mm256_mul_ps(fscal,dx02);
1326 ty = _mm256_mul_ps(fscal,dy02);
1327 tz = _mm256_mul_ps(fscal,dz02);
1329 /* Update vectorial force */
1330 fix0 = _mm256_add_ps(fix0,tx);
1331 fiy0 = _mm256_add_ps(fiy0,ty);
1332 fiz0 = _mm256_add_ps(fiz0,tz);
1334 fjx2 = _mm256_add_ps(fjx2,tx);
1335 fjy2 = _mm256_add_ps(fjy2,ty);
1336 fjz2 = _mm256_add_ps(fjz2,tz);
1338 /**************************
1339 * CALCULATE INTERACTIONS *
1340 **************************/
1342 /* COULOMB ELECTROSTATICS */
1343 velec = _mm256_mul_ps(qq10,rinv10);
1344 felec = _mm256_mul_ps(velec,rinvsq10);
1348 /* Calculate temporary vectorial force */
1349 tx = _mm256_mul_ps(fscal,dx10);
1350 ty = _mm256_mul_ps(fscal,dy10);
1351 tz = _mm256_mul_ps(fscal,dz10);
1353 /* Update vectorial force */
1354 fix1 = _mm256_add_ps(fix1,tx);
1355 fiy1 = _mm256_add_ps(fiy1,ty);
1356 fiz1 = _mm256_add_ps(fiz1,tz);
1358 fjx0 = _mm256_add_ps(fjx0,tx);
1359 fjy0 = _mm256_add_ps(fjy0,ty);
1360 fjz0 = _mm256_add_ps(fjz0,tz);
1362 /**************************
1363 * CALCULATE INTERACTIONS *
1364 **************************/
1366 /* COULOMB ELECTROSTATICS */
1367 velec = _mm256_mul_ps(qq11,rinv11);
1368 felec = _mm256_mul_ps(velec,rinvsq11);
1372 /* Calculate temporary vectorial force */
1373 tx = _mm256_mul_ps(fscal,dx11);
1374 ty = _mm256_mul_ps(fscal,dy11);
1375 tz = _mm256_mul_ps(fscal,dz11);
1377 /* Update vectorial force */
1378 fix1 = _mm256_add_ps(fix1,tx);
1379 fiy1 = _mm256_add_ps(fiy1,ty);
1380 fiz1 = _mm256_add_ps(fiz1,tz);
1382 fjx1 = _mm256_add_ps(fjx1,tx);
1383 fjy1 = _mm256_add_ps(fjy1,ty);
1384 fjz1 = _mm256_add_ps(fjz1,tz);
1386 /**************************
1387 * CALCULATE INTERACTIONS *
1388 **************************/
1390 /* COULOMB ELECTROSTATICS */
1391 velec = _mm256_mul_ps(qq12,rinv12);
1392 felec = _mm256_mul_ps(velec,rinvsq12);
1396 /* Calculate temporary vectorial force */
1397 tx = _mm256_mul_ps(fscal,dx12);
1398 ty = _mm256_mul_ps(fscal,dy12);
1399 tz = _mm256_mul_ps(fscal,dz12);
1401 /* Update vectorial force */
1402 fix1 = _mm256_add_ps(fix1,tx);
1403 fiy1 = _mm256_add_ps(fiy1,ty);
1404 fiz1 = _mm256_add_ps(fiz1,tz);
1406 fjx2 = _mm256_add_ps(fjx2,tx);
1407 fjy2 = _mm256_add_ps(fjy2,ty);
1408 fjz2 = _mm256_add_ps(fjz2,tz);
1410 /**************************
1411 * CALCULATE INTERACTIONS *
1412 **************************/
1414 /* COULOMB ELECTROSTATICS */
1415 velec = _mm256_mul_ps(qq20,rinv20);
1416 felec = _mm256_mul_ps(velec,rinvsq20);
1420 /* Calculate temporary vectorial force */
1421 tx = _mm256_mul_ps(fscal,dx20);
1422 ty = _mm256_mul_ps(fscal,dy20);
1423 tz = _mm256_mul_ps(fscal,dz20);
1425 /* Update vectorial force */
1426 fix2 = _mm256_add_ps(fix2,tx);
1427 fiy2 = _mm256_add_ps(fiy2,ty);
1428 fiz2 = _mm256_add_ps(fiz2,tz);
1430 fjx0 = _mm256_add_ps(fjx0,tx);
1431 fjy0 = _mm256_add_ps(fjy0,ty);
1432 fjz0 = _mm256_add_ps(fjz0,tz);
1434 /**************************
1435 * CALCULATE INTERACTIONS *
1436 **************************/
1438 /* COULOMB ELECTROSTATICS */
1439 velec = _mm256_mul_ps(qq21,rinv21);
1440 felec = _mm256_mul_ps(velec,rinvsq21);
1444 /* Calculate temporary vectorial force */
1445 tx = _mm256_mul_ps(fscal,dx21);
1446 ty = _mm256_mul_ps(fscal,dy21);
1447 tz = _mm256_mul_ps(fscal,dz21);
1449 /* Update vectorial force */
1450 fix2 = _mm256_add_ps(fix2,tx);
1451 fiy2 = _mm256_add_ps(fiy2,ty);
1452 fiz2 = _mm256_add_ps(fiz2,tz);
1454 fjx1 = _mm256_add_ps(fjx1,tx);
1455 fjy1 = _mm256_add_ps(fjy1,ty);
1456 fjz1 = _mm256_add_ps(fjz1,tz);
1458 /**************************
1459 * CALCULATE INTERACTIONS *
1460 **************************/
1462 /* COULOMB ELECTROSTATICS */
1463 velec = _mm256_mul_ps(qq22,rinv22);
1464 felec = _mm256_mul_ps(velec,rinvsq22);
1468 /* Calculate temporary vectorial force */
1469 tx = _mm256_mul_ps(fscal,dx22);
1470 ty = _mm256_mul_ps(fscal,dy22);
1471 tz = _mm256_mul_ps(fscal,dz22);
1473 /* Update vectorial force */
1474 fix2 = _mm256_add_ps(fix2,tx);
1475 fiy2 = _mm256_add_ps(fiy2,ty);
1476 fiz2 = _mm256_add_ps(fiz2,tz);
1478 fjx2 = _mm256_add_ps(fjx2,tx);
1479 fjy2 = _mm256_add_ps(fjy2,ty);
1480 fjz2 = _mm256_add_ps(fjz2,tz);
1482 fjptrA = f+j_coord_offsetA;
1483 fjptrB = f+j_coord_offsetB;
1484 fjptrC = f+j_coord_offsetC;
1485 fjptrD = f+j_coord_offsetD;
1486 fjptrE = f+j_coord_offsetE;
1487 fjptrF = f+j_coord_offsetF;
1488 fjptrG = f+j_coord_offsetG;
1489 fjptrH = f+j_coord_offsetH;
1491 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1492 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1494 /* Inner loop uses 241 flops */
1497 if(jidx<j_index_end)
1500 /* Get j neighbor index, and coordinate index */
1501 jnrlistA = jjnr[jidx];
1502 jnrlistB = jjnr[jidx+1];
1503 jnrlistC = jjnr[jidx+2];
1504 jnrlistD = jjnr[jidx+3];
1505 jnrlistE = jjnr[jidx+4];
1506 jnrlistF = jjnr[jidx+5];
1507 jnrlistG = jjnr[jidx+6];
1508 jnrlistH = jjnr[jidx+7];
1509 /* Sign of each element will be negative for non-real atoms.
1510 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1511 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1513 dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
1514 gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
1516 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1517 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1518 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1519 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1520 jnrE = (jnrlistE>=0) ? jnrlistE : 0;
1521 jnrF = (jnrlistF>=0) ? jnrlistF : 0;
1522 jnrG = (jnrlistG>=0) ? jnrlistG : 0;
1523 jnrH = (jnrlistH>=0) ? jnrlistH : 0;
1524 j_coord_offsetA = DIM*jnrA;
1525 j_coord_offsetB = DIM*jnrB;
1526 j_coord_offsetC = DIM*jnrC;
1527 j_coord_offsetD = DIM*jnrD;
1528 j_coord_offsetE = DIM*jnrE;
1529 j_coord_offsetF = DIM*jnrF;
1530 j_coord_offsetG = DIM*jnrG;
1531 j_coord_offsetH = DIM*jnrH;
1533 /* load j atom coordinates */
1534 gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1535 x+j_coord_offsetC,x+j_coord_offsetD,
1536 x+j_coord_offsetE,x+j_coord_offsetF,
1537 x+j_coord_offsetG,x+j_coord_offsetH,
1538 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1540 /* Calculate displacement vector */
1541 dx00 = _mm256_sub_ps(ix0,jx0);
1542 dy00 = _mm256_sub_ps(iy0,jy0);
1543 dz00 = _mm256_sub_ps(iz0,jz0);
1544 dx01 = _mm256_sub_ps(ix0,jx1);
1545 dy01 = _mm256_sub_ps(iy0,jy1);
1546 dz01 = _mm256_sub_ps(iz0,jz1);
1547 dx02 = _mm256_sub_ps(ix0,jx2);
1548 dy02 = _mm256_sub_ps(iy0,jy2);
1549 dz02 = _mm256_sub_ps(iz0,jz2);
1550 dx10 = _mm256_sub_ps(ix1,jx0);
1551 dy10 = _mm256_sub_ps(iy1,jy0);
1552 dz10 = _mm256_sub_ps(iz1,jz0);
1553 dx11 = _mm256_sub_ps(ix1,jx1);
1554 dy11 = _mm256_sub_ps(iy1,jy1);
1555 dz11 = _mm256_sub_ps(iz1,jz1);
1556 dx12 = _mm256_sub_ps(ix1,jx2);
1557 dy12 = _mm256_sub_ps(iy1,jy2);
1558 dz12 = _mm256_sub_ps(iz1,jz2);
1559 dx20 = _mm256_sub_ps(ix2,jx0);
1560 dy20 = _mm256_sub_ps(iy2,jy0);
1561 dz20 = _mm256_sub_ps(iz2,jz0);
1562 dx21 = _mm256_sub_ps(ix2,jx1);
1563 dy21 = _mm256_sub_ps(iy2,jy1);
1564 dz21 = _mm256_sub_ps(iz2,jz1);
1565 dx22 = _mm256_sub_ps(ix2,jx2);
1566 dy22 = _mm256_sub_ps(iy2,jy2);
1567 dz22 = _mm256_sub_ps(iz2,jz2);
1569 /* Calculate squared distance and things based on it */
1570 rsq00 = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1571 rsq01 = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1572 rsq02 = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1573 rsq10 = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1574 rsq11 = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1575 rsq12 = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1576 rsq20 = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1577 rsq21 = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1578 rsq22 = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1580 rinv00 = avx256_invsqrt_f(rsq00);
1581 rinv01 = avx256_invsqrt_f(rsq01);
1582 rinv02 = avx256_invsqrt_f(rsq02);
1583 rinv10 = avx256_invsqrt_f(rsq10);
1584 rinv11 = avx256_invsqrt_f(rsq11);
1585 rinv12 = avx256_invsqrt_f(rsq12);
1586 rinv20 = avx256_invsqrt_f(rsq20);
1587 rinv21 = avx256_invsqrt_f(rsq21);
1588 rinv22 = avx256_invsqrt_f(rsq22);
1590 rinvsq00 = _mm256_mul_ps(rinv00,rinv00);
1591 rinvsq01 = _mm256_mul_ps(rinv01,rinv01);
1592 rinvsq02 = _mm256_mul_ps(rinv02,rinv02);
1593 rinvsq10 = _mm256_mul_ps(rinv10,rinv10);
1594 rinvsq11 = _mm256_mul_ps(rinv11,rinv11);
1595 rinvsq12 = _mm256_mul_ps(rinv12,rinv12);
1596 rinvsq20 = _mm256_mul_ps(rinv20,rinv20);
1597 rinvsq21 = _mm256_mul_ps(rinv21,rinv21);
1598 rinvsq22 = _mm256_mul_ps(rinv22,rinv22);
1600 fjx0 = _mm256_setzero_ps();
1601 fjy0 = _mm256_setzero_ps();
1602 fjz0 = _mm256_setzero_ps();
1603 fjx1 = _mm256_setzero_ps();
1604 fjy1 = _mm256_setzero_ps();
1605 fjz1 = _mm256_setzero_ps();
1606 fjx2 = _mm256_setzero_ps();
1607 fjy2 = _mm256_setzero_ps();
1608 fjz2 = _mm256_setzero_ps();
1610 /**************************
1611 * CALCULATE INTERACTIONS *
1612 **************************/
1614 /* COULOMB ELECTROSTATICS */
1615 velec = _mm256_mul_ps(qq00,rinv00);
1616 felec = _mm256_mul_ps(velec,rinvsq00);
1618 /* LENNARD-JONES DISPERSION/REPULSION */
1620 rinvsix = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1621 fvdw = _mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_00,rinvsix),c6_00),_mm256_mul_ps(rinvsix,rinvsq00));
1623 fscal = _mm256_add_ps(felec,fvdw);
1625 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1627 /* Calculate temporary vectorial force */
1628 tx = _mm256_mul_ps(fscal,dx00);
1629 ty = _mm256_mul_ps(fscal,dy00);
1630 tz = _mm256_mul_ps(fscal,dz00);
1632 /* Update vectorial force */
1633 fix0 = _mm256_add_ps(fix0,tx);
1634 fiy0 = _mm256_add_ps(fiy0,ty);
1635 fiz0 = _mm256_add_ps(fiz0,tz);
1637 fjx0 = _mm256_add_ps(fjx0,tx);
1638 fjy0 = _mm256_add_ps(fjy0,ty);
1639 fjz0 = _mm256_add_ps(fjz0,tz);
1641 /**************************
1642 * CALCULATE INTERACTIONS *
1643 **************************/
1645 /* COULOMB ELECTROSTATICS */
1646 velec = _mm256_mul_ps(qq01,rinv01);
1647 felec = _mm256_mul_ps(velec,rinvsq01);
1651 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1653 /* Calculate temporary vectorial force */
1654 tx = _mm256_mul_ps(fscal,dx01);
1655 ty = _mm256_mul_ps(fscal,dy01);
1656 tz = _mm256_mul_ps(fscal,dz01);
1658 /* Update vectorial force */
1659 fix0 = _mm256_add_ps(fix0,tx);
1660 fiy0 = _mm256_add_ps(fiy0,ty);
1661 fiz0 = _mm256_add_ps(fiz0,tz);
1663 fjx1 = _mm256_add_ps(fjx1,tx);
1664 fjy1 = _mm256_add_ps(fjy1,ty);
1665 fjz1 = _mm256_add_ps(fjz1,tz);
1667 /**************************
1668 * CALCULATE INTERACTIONS *
1669 **************************/
1671 /* COULOMB ELECTROSTATICS */
1672 velec = _mm256_mul_ps(qq02,rinv02);
1673 felec = _mm256_mul_ps(velec,rinvsq02);
1677 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1679 /* Calculate temporary vectorial force */
1680 tx = _mm256_mul_ps(fscal,dx02);
1681 ty = _mm256_mul_ps(fscal,dy02);
1682 tz = _mm256_mul_ps(fscal,dz02);
1684 /* Update vectorial force */
1685 fix0 = _mm256_add_ps(fix0,tx);
1686 fiy0 = _mm256_add_ps(fiy0,ty);
1687 fiz0 = _mm256_add_ps(fiz0,tz);
1689 fjx2 = _mm256_add_ps(fjx2,tx);
1690 fjy2 = _mm256_add_ps(fjy2,ty);
1691 fjz2 = _mm256_add_ps(fjz2,tz);
1693 /**************************
1694 * CALCULATE INTERACTIONS *
1695 **************************/
1697 /* COULOMB ELECTROSTATICS */
1698 velec = _mm256_mul_ps(qq10,rinv10);
1699 felec = _mm256_mul_ps(velec,rinvsq10);
1703 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1705 /* Calculate temporary vectorial force */
1706 tx = _mm256_mul_ps(fscal,dx10);
1707 ty = _mm256_mul_ps(fscal,dy10);
1708 tz = _mm256_mul_ps(fscal,dz10);
1710 /* Update vectorial force */
1711 fix1 = _mm256_add_ps(fix1,tx);
1712 fiy1 = _mm256_add_ps(fiy1,ty);
1713 fiz1 = _mm256_add_ps(fiz1,tz);
1715 fjx0 = _mm256_add_ps(fjx0,tx);
1716 fjy0 = _mm256_add_ps(fjy0,ty);
1717 fjz0 = _mm256_add_ps(fjz0,tz);
1719 /**************************
1720 * CALCULATE INTERACTIONS *
1721 **************************/
1723 /* COULOMB ELECTROSTATICS */
1724 velec = _mm256_mul_ps(qq11,rinv11);
1725 felec = _mm256_mul_ps(velec,rinvsq11);
1729 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1731 /* Calculate temporary vectorial force */
1732 tx = _mm256_mul_ps(fscal,dx11);
1733 ty = _mm256_mul_ps(fscal,dy11);
1734 tz = _mm256_mul_ps(fscal,dz11);
1736 /* Update vectorial force */
1737 fix1 = _mm256_add_ps(fix1,tx);
1738 fiy1 = _mm256_add_ps(fiy1,ty);
1739 fiz1 = _mm256_add_ps(fiz1,tz);
1741 fjx1 = _mm256_add_ps(fjx1,tx);
1742 fjy1 = _mm256_add_ps(fjy1,ty);
1743 fjz1 = _mm256_add_ps(fjz1,tz);
1745 /**************************
1746 * CALCULATE INTERACTIONS *
1747 **************************/
1749 /* COULOMB ELECTROSTATICS */
1750 velec = _mm256_mul_ps(qq12,rinv12);
1751 felec = _mm256_mul_ps(velec,rinvsq12);
1755 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1757 /* Calculate temporary vectorial force */
1758 tx = _mm256_mul_ps(fscal,dx12);
1759 ty = _mm256_mul_ps(fscal,dy12);
1760 tz = _mm256_mul_ps(fscal,dz12);
1762 /* Update vectorial force */
1763 fix1 = _mm256_add_ps(fix1,tx);
1764 fiy1 = _mm256_add_ps(fiy1,ty);
1765 fiz1 = _mm256_add_ps(fiz1,tz);
1767 fjx2 = _mm256_add_ps(fjx2,tx);
1768 fjy2 = _mm256_add_ps(fjy2,ty);
1769 fjz2 = _mm256_add_ps(fjz2,tz);
1771 /**************************
1772 * CALCULATE INTERACTIONS *
1773 **************************/
1775 /* COULOMB ELECTROSTATICS */
1776 velec = _mm256_mul_ps(qq20,rinv20);
1777 felec = _mm256_mul_ps(velec,rinvsq20);
1781 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1783 /* Calculate temporary vectorial force */
1784 tx = _mm256_mul_ps(fscal,dx20);
1785 ty = _mm256_mul_ps(fscal,dy20);
1786 tz = _mm256_mul_ps(fscal,dz20);
1788 /* Update vectorial force */
1789 fix2 = _mm256_add_ps(fix2,tx);
1790 fiy2 = _mm256_add_ps(fiy2,ty);
1791 fiz2 = _mm256_add_ps(fiz2,tz);
1793 fjx0 = _mm256_add_ps(fjx0,tx);
1794 fjy0 = _mm256_add_ps(fjy0,ty);
1795 fjz0 = _mm256_add_ps(fjz0,tz);
1797 /**************************
1798 * CALCULATE INTERACTIONS *
1799 **************************/
1801 /* COULOMB ELECTROSTATICS */
1802 velec = _mm256_mul_ps(qq21,rinv21);
1803 felec = _mm256_mul_ps(velec,rinvsq21);
1807 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1809 /* Calculate temporary vectorial force */
1810 tx = _mm256_mul_ps(fscal,dx21);
1811 ty = _mm256_mul_ps(fscal,dy21);
1812 tz = _mm256_mul_ps(fscal,dz21);
1814 /* Update vectorial force */
1815 fix2 = _mm256_add_ps(fix2,tx);
1816 fiy2 = _mm256_add_ps(fiy2,ty);
1817 fiz2 = _mm256_add_ps(fiz2,tz);
1819 fjx1 = _mm256_add_ps(fjx1,tx);
1820 fjy1 = _mm256_add_ps(fjy1,ty);
1821 fjz1 = _mm256_add_ps(fjz1,tz);
1823 /**************************
1824 * CALCULATE INTERACTIONS *
1825 **************************/
1827 /* COULOMB ELECTROSTATICS */
1828 velec = _mm256_mul_ps(qq22,rinv22);
1829 felec = _mm256_mul_ps(velec,rinvsq22);
1833 fscal = _mm256_andnot_ps(dummy_mask,fscal);
1835 /* Calculate temporary vectorial force */
1836 tx = _mm256_mul_ps(fscal,dx22);
1837 ty = _mm256_mul_ps(fscal,dy22);
1838 tz = _mm256_mul_ps(fscal,dz22);
1840 /* Update vectorial force */
1841 fix2 = _mm256_add_ps(fix2,tx);
1842 fiy2 = _mm256_add_ps(fiy2,ty);
1843 fiz2 = _mm256_add_ps(fiz2,tz);
1845 fjx2 = _mm256_add_ps(fjx2,tx);
1846 fjy2 = _mm256_add_ps(fjy2,ty);
1847 fjz2 = _mm256_add_ps(fjz2,tz);
1849 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1850 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1851 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1852 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1853 fjptrE = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1854 fjptrF = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1855 fjptrG = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1856 fjptrH = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1858 gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1859 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1861 /* Inner loop uses 241 flops */
1864 /* End of innermost loop */
1866 gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1867 f+i_coord_offset,fshift+i_shift_offset);
1869 /* Increment number of inner iterations */
1870 inneriter += j_index_end - j_index_start;
1872 /* Outer loop uses 18 flops */
1875 /* Increment number of outer iterations */
1878 /* Update outer/inner flops */
1880 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*241);