Compile nonbonded kernels as C++
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_avx_256_single / nb_kernel_ElecCoul_VdwLJ_GeomW3W3_avx_256_single.cpp
1 /*
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4  * Copyright (c) 2012,2013,2014,2015,2017,2018, by the GROMACS development team, led by
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35 /*
36  * Note: this file was generated by the GROMACS avx_256_single kernel generator.
37  */
38 #include "gmxpre.h"
39
40 #include "config.h"
41
42 #include <math.h>
43
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
46
47 #include "kernelutil_x86_avx_256_single.h"
48
49 /*
50  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_256_single
51  * Electrostatics interaction: Coulomb
52  * VdW interaction:            LennardJones
53  * Geometry:                   Water3-Water3
54  * Calculate force/pot:        PotentialAndForce
55  */
56 void
57 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_256_single
58                     (t_nblist                    * gmx_restrict       nlist,
59                      rvec                        * gmx_restrict          xx,
60                      rvec                        * gmx_restrict          ff,
61                      struct t_forcerec           * gmx_restrict          fr,
62                      t_mdatoms                   * gmx_restrict     mdatoms,
63                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64                      t_nrnb                      * gmx_restrict        nrnb)
65 {
66     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
67      * just 0 for non-waters.
68      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
69      * jnr indices corresponding to data put in the four positions in the SIMD register.
70      */
71     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
72     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73     int              jnrA,jnrB,jnrC,jnrD;
74     int              jnrE,jnrF,jnrG,jnrH;
75     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
77     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
78     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
79     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
80     real             rcutoff_scalar;
81     real             *shiftvec,*fshift,*x,*f;
82     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
83     real             scratch[4*DIM];
84     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
85     real *           vdwioffsetptr0;
86     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
87     real *           vdwioffsetptr1;
88     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
89     real *           vdwioffsetptr2;
90     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
91     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
92     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
93     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
94     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
95     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
96     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
97     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
98     __m256           dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
99     __m256           dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
100     __m256           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
101     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
102     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
103     __m256           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
104     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
105     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
106     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
107     real             *charge;
108     int              nvdwtype;
109     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
110     int              *vdwtype;
111     real             *vdwparam;
112     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
113     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
114     __m256           dummy_mask,cutoff_mask;
115     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
116     __m256           one     = _mm256_set1_ps(1.0);
117     __m256           two     = _mm256_set1_ps(2.0);
118     x                = xx[0];
119     f                = ff[0];
120
121     nri              = nlist->nri;
122     iinr             = nlist->iinr;
123     jindex           = nlist->jindex;
124     jjnr             = nlist->jjnr;
125     shiftidx         = nlist->shift;
126     gid              = nlist->gid;
127     shiftvec         = fr->shift_vec[0];
128     fshift           = fr->fshift[0];
129     facel            = _mm256_set1_ps(fr->ic->epsfac);
130     charge           = mdatoms->chargeA;
131     nvdwtype         = fr->ntype;
132     vdwparam         = fr->nbfp;
133     vdwtype          = mdatoms->typeA;
134
135     /* Setup water-specific parameters */
136     inr              = nlist->iinr[0];
137     iq0              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
138     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
139     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
140     vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
141
142     jq0              = _mm256_set1_ps(charge[inr+0]);
143     jq1              = _mm256_set1_ps(charge[inr+1]);
144     jq2              = _mm256_set1_ps(charge[inr+2]);
145     vdwjidx0A        = 2*vdwtype[inr+0];
146     qq00             = _mm256_mul_ps(iq0,jq0);
147     c6_00            = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
148     c12_00           = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
149     qq01             = _mm256_mul_ps(iq0,jq1);
150     qq02             = _mm256_mul_ps(iq0,jq2);
151     qq10             = _mm256_mul_ps(iq1,jq0);
152     qq11             = _mm256_mul_ps(iq1,jq1);
153     qq12             = _mm256_mul_ps(iq1,jq2);
154     qq20             = _mm256_mul_ps(iq2,jq0);
155     qq21             = _mm256_mul_ps(iq2,jq1);
156     qq22             = _mm256_mul_ps(iq2,jq2);
157
158     /* Avoid stupid compiler warnings */
159     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
160     j_coord_offsetA = 0;
161     j_coord_offsetB = 0;
162     j_coord_offsetC = 0;
163     j_coord_offsetD = 0;
164     j_coord_offsetE = 0;
165     j_coord_offsetF = 0;
166     j_coord_offsetG = 0;
167     j_coord_offsetH = 0;
168
169     outeriter        = 0;
170     inneriter        = 0;
171
172     for(iidx=0;iidx<4*DIM;iidx++)
173     {
174         scratch[iidx] = 0.0;
175     }
176
177     /* Start outer loop over neighborlists */
178     for(iidx=0; iidx<nri; iidx++)
179     {
180         /* Load shift vector for this list */
181         i_shift_offset   = DIM*shiftidx[iidx];
182
183         /* Load limits for loop over neighbors */
184         j_index_start    = jindex[iidx];
185         j_index_end      = jindex[iidx+1];
186
187         /* Get outer coordinate index */
188         inr              = iinr[iidx];
189         i_coord_offset   = DIM*inr;
190
191         /* Load i particle coords and add shift vector */
192         gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
193                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
194
195         fix0             = _mm256_setzero_ps();
196         fiy0             = _mm256_setzero_ps();
197         fiz0             = _mm256_setzero_ps();
198         fix1             = _mm256_setzero_ps();
199         fiy1             = _mm256_setzero_ps();
200         fiz1             = _mm256_setzero_ps();
201         fix2             = _mm256_setzero_ps();
202         fiy2             = _mm256_setzero_ps();
203         fiz2             = _mm256_setzero_ps();
204
205         /* Reset potential sums */
206         velecsum         = _mm256_setzero_ps();
207         vvdwsum          = _mm256_setzero_ps();
208
209         /* Start inner kernel loop */
210         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
211         {
212
213             /* Get j neighbor index, and coordinate index */
214             jnrA             = jjnr[jidx];
215             jnrB             = jjnr[jidx+1];
216             jnrC             = jjnr[jidx+2];
217             jnrD             = jjnr[jidx+3];
218             jnrE             = jjnr[jidx+4];
219             jnrF             = jjnr[jidx+5];
220             jnrG             = jjnr[jidx+6];
221             jnrH             = jjnr[jidx+7];
222             j_coord_offsetA  = DIM*jnrA;
223             j_coord_offsetB  = DIM*jnrB;
224             j_coord_offsetC  = DIM*jnrC;
225             j_coord_offsetD  = DIM*jnrD;
226             j_coord_offsetE  = DIM*jnrE;
227             j_coord_offsetF  = DIM*jnrF;
228             j_coord_offsetG  = DIM*jnrG;
229             j_coord_offsetH  = DIM*jnrH;
230
231             /* load j atom coordinates */
232             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
233                                                  x+j_coord_offsetC,x+j_coord_offsetD,
234                                                  x+j_coord_offsetE,x+j_coord_offsetF,
235                                                  x+j_coord_offsetG,x+j_coord_offsetH,
236                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
237
238             /* Calculate displacement vector */
239             dx00             = _mm256_sub_ps(ix0,jx0);
240             dy00             = _mm256_sub_ps(iy0,jy0);
241             dz00             = _mm256_sub_ps(iz0,jz0);
242             dx01             = _mm256_sub_ps(ix0,jx1);
243             dy01             = _mm256_sub_ps(iy0,jy1);
244             dz01             = _mm256_sub_ps(iz0,jz1);
245             dx02             = _mm256_sub_ps(ix0,jx2);
246             dy02             = _mm256_sub_ps(iy0,jy2);
247             dz02             = _mm256_sub_ps(iz0,jz2);
248             dx10             = _mm256_sub_ps(ix1,jx0);
249             dy10             = _mm256_sub_ps(iy1,jy0);
250             dz10             = _mm256_sub_ps(iz1,jz0);
251             dx11             = _mm256_sub_ps(ix1,jx1);
252             dy11             = _mm256_sub_ps(iy1,jy1);
253             dz11             = _mm256_sub_ps(iz1,jz1);
254             dx12             = _mm256_sub_ps(ix1,jx2);
255             dy12             = _mm256_sub_ps(iy1,jy2);
256             dz12             = _mm256_sub_ps(iz1,jz2);
257             dx20             = _mm256_sub_ps(ix2,jx0);
258             dy20             = _mm256_sub_ps(iy2,jy0);
259             dz20             = _mm256_sub_ps(iz2,jz0);
260             dx21             = _mm256_sub_ps(ix2,jx1);
261             dy21             = _mm256_sub_ps(iy2,jy1);
262             dz21             = _mm256_sub_ps(iz2,jz1);
263             dx22             = _mm256_sub_ps(ix2,jx2);
264             dy22             = _mm256_sub_ps(iy2,jy2);
265             dz22             = _mm256_sub_ps(iz2,jz2);
266
267             /* Calculate squared distance and things based on it */
268             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
269             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
270             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
271             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
272             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
273             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
274             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
275             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
276             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
277
278             rinv00           = avx256_invsqrt_f(rsq00);
279             rinv01           = avx256_invsqrt_f(rsq01);
280             rinv02           = avx256_invsqrt_f(rsq02);
281             rinv10           = avx256_invsqrt_f(rsq10);
282             rinv11           = avx256_invsqrt_f(rsq11);
283             rinv12           = avx256_invsqrt_f(rsq12);
284             rinv20           = avx256_invsqrt_f(rsq20);
285             rinv21           = avx256_invsqrt_f(rsq21);
286             rinv22           = avx256_invsqrt_f(rsq22);
287
288             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
289             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
290             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
291             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
292             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
293             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
294             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
295             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
296             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
297
298             fjx0             = _mm256_setzero_ps();
299             fjy0             = _mm256_setzero_ps();
300             fjz0             = _mm256_setzero_ps();
301             fjx1             = _mm256_setzero_ps();
302             fjy1             = _mm256_setzero_ps();
303             fjz1             = _mm256_setzero_ps();
304             fjx2             = _mm256_setzero_ps();
305             fjy2             = _mm256_setzero_ps();
306             fjz2             = _mm256_setzero_ps();
307
308             /**************************
309              * CALCULATE INTERACTIONS *
310              **************************/
311
312             /* COULOMB ELECTROSTATICS */
313             velec            = _mm256_mul_ps(qq00,rinv00);
314             felec            = _mm256_mul_ps(velec,rinvsq00);
315
316             /* LENNARD-JONES DISPERSION/REPULSION */
317
318             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
319             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
320             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
321             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
322             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
323
324             /* Update potential sum for this i atom from the interaction with this j atom. */
325             velecsum         = _mm256_add_ps(velecsum,velec);
326             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
327
328             fscal            = _mm256_add_ps(felec,fvdw);
329
330             /* Calculate temporary vectorial force */
331             tx               = _mm256_mul_ps(fscal,dx00);
332             ty               = _mm256_mul_ps(fscal,dy00);
333             tz               = _mm256_mul_ps(fscal,dz00);
334
335             /* Update vectorial force */
336             fix0             = _mm256_add_ps(fix0,tx);
337             fiy0             = _mm256_add_ps(fiy0,ty);
338             fiz0             = _mm256_add_ps(fiz0,tz);
339
340             fjx0             = _mm256_add_ps(fjx0,tx);
341             fjy0             = _mm256_add_ps(fjy0,ty);
342             fjz0             = _mm256_add_ps(fjz0,tz);
343
344             /**************************
345              * CALCULATE INTERACTIONS *
346              **************************/
347
348             /* COULOMB ELECTROSTATICS */
349             velec            = _mm256_mul_ps(qq01,rinv01);
350             felec            = _mm256_mul_ps(velec,rinvsq01);
351
352             /* Update potential sum for this i atom from the interaction with this j atom. */
353             velecsum         = _mm256_add_ps(velecsum,velec);
354
355             fscal            = felec;
356
357             /* Calculate temporary vectorial force */
358             tx               = _mm256_mul_ps(fscal,dx01);
359             ty               = _mm256_mul_ps(fscal,dy01);
360             tz               = _mm256_mul_ps(fscal,dz01);
361
362             /* Update vectorial force */
363             fix0             = _mm256_add_ps(fix0,tx);
364             fiy0             = _mm256_add_ps(fiy0,ty);
365             fiz0             = _mm256_add_ps(fiz0,tz);
366
367             fjx1             = _mm256_add_ps(fjx1,tx);
368             fjy1             = _mm256_add_ps(fjy1,ty);
369             fjz1             = _mm256_add_ps(fjz1,tz);
370
371             /**************************
372              * CALCULATE INTERACTIONS *
373              **************************/
374
375             /* COULOMB ELECTROSTATICS */
376             velec            = _mm256_mul_ps(qq02,rinv02);
377             felec            = _mm256_mul_ps(velec,rinvsq02);
378
379             /* Update potential sum for this i atom from the interaction with this j atom. */
380             velecsum         = _mm256_add_ps(velecsum,velec);
381
382             fscal            = felec;
383
384             /* Calculate temporary vectorial force */
385             tx               = _mm256_mul_ps(fscal,dx02);
386             ty               = _mm256_mul_ps(fscal,dy02);
387             tz               = _mm256_mul_ps(fscal,dz02);
388
389             /* Update vectorial force */
390             fix0             = _mm256_add_ps(fix0,tx);
391             fiy0             = _mm256_add_ps(fiy0,ty);
392             fiz0             = _mm256_add_ps(fiz0,tz);
393
394             fjx2             = _mm256_add_ps(fjx2,tx);
395             fjy2             = _mm256_add_ps(fjy2,ty);
396             fjz2             = _mm256_add_ps(fjz2,tz);
397
398             /**************************
399              * CALCULATE INTERACTIONS *
400              **************************/
401
402             /* COULOMB ELECTROSTATICS */
403             velec            = _mm256_mul_ps(qq10,rinv10);
404             felec            = _mm256_mul_ps(velec,rinvsq10);
405
406             /* Update potential sum for this i atom from the interaction with this j atom. */
407             velecsum         = _mm256_add_ps(velecsum,velec);
408
409             fscal            = felec;
410
411             /* Calculate temporary vectorial force */
412             tx               = _mm256_mul_ps(fscal,dx10);
413             ty               = _mm256_mul_ps(fscal,dy10);
414             tz               = _mm256_mul_ps(fscal,dz10);
415
416             /* Update vectorial force */
417             fix1             = _mm256_add_ps(fix1,tx);
418             fiy1             = _mm256_add_ps(fiy1,ty);
419             fiz1             = _mm256_add_ps(fiz1,tz);
420
421             fjx0             = _mm256_add_ps(fjx0,tx);
422             fjy0             = _mm256_add_ps(fjy0,ty);
423             fjz0             = _mm256_add_ps(fjz0,tz);
424
425             /**************************
426              * CALCULATE INTERACTIONS *
427              **************************/
428
429             /* COULOMB ELECTROSTATICS */
430             velec            = _mm256_mul_ps(qq11,rinv11);
431             felec            = _mm256_mul_ps(velec,rinvsq11);
432
433             /* Update potential sum for this i atom from the interaction with this j atom. */
434             velecsum         = _mm256_add_ps(velecsum,velec);
435
436             fscal            = felec;
437
438             /* Calculate temporary vectorial force */
439             tx               = _mm256_mul_ps(fscal,dx11);
440             ty               = _mm256_mul_ps(fscal,dy11);
441             tz               = _mm256_mul_ps(fscal,dz11);
442
443             /* Update vectorial force */
444             fix1             = _mm256_add_ps(fix1,tx);
445             fiy1             = _mm256_add_ps(fiy1,ty);
446             fiz1             = _mm256_add_ps(fiz1,tz);
447
448             fjx1             = _mm256_add_ps(fjx1,tx);
449             fjy1             = _mm256_add_ps(fjy1,ty);
450             fjz1             = _mm256_add_ps(fjz1,tz);
451
452             /**************************
453              * CALCULATE INTERACTIONS *
454              **************************/
455
456             /* COULOMB ELECTROSTATICS */
457             velec            = _mm256_mul_ps(qq12,rinv12);
458             felec            = _mm256_mul_ps(velec,rinvsq12);
459
460             /* Update potential sum for this i atom from the interaction with this j atom. */
461             velecsum         = _mm256_add_ps(velecsum,velec);
462
463             fscal            = felec;
464
465             /* Calculate temporary vectorial force */
466             tx               = _mm256_mul_ps(fscal,dx12);
467             ty               = _mm256_mul_ps(fscal,dy12);
468             tz               = _mm256_mul_ps(fscal,dz12);
469
470             /* Update vectorial force */
471             fix1             = _mm256_add_ps(fix1,tx);
472             fiy1             = _mm256_add_ps(fiy1,ty);
473             fiz1             = _mm256_add_ps(fiz1,tz);
474
475             fjx2             = _mm256_add_ps(fjx2,tx);
476             fjy2             = _mm256_add_ps(fjy2,ty);
477             fjz2             = _mm256_add_ps(fjz2,tz);
478
479             /**************************
480              * CALCULATE INTERACTIONS *
481              **************************/
482
483             /* COULOMB ELECTROSTATICS */
484             velec            = _mm256_mul_ps(qq20,rinv20);
485             felec            = _mm256_mul_ps(velec,rinvsq20);
486
487             /* Update potential sum for this i atom from the interaction with this j atom. */
488             velecsum         = _mm256_add_ps(velecsum,velec);
489
490             fscal            = felec;
491
492             /* Calculate temporary vectorial force */
493             tx               = _mm256_mul_ps(fscal,dx20);
494             ty               = _mm256_mul_ps(fscal,dy20);
495             tz               = _mm256_mul_ps(fscal,dz20);
496
497             /* Update vectorial force */
498             fix2             = _mm256_add_ps(fix2,tx);
499             fiy2             = _mm256_add_ps(fiy2,ty);
500             fiz2             = _mm256_add_ps(fiz2,tz);
501
502             fjx0             = _mm256_add_ps(fjx0,tx);
503             fjy0             = _mm256_add_ps(fjy0,ty);
504             fjz0             = _mm256_add_ps(fjz0,tz);
505
506             /**************************
507              * CALCULATE INTERACTIONS *
508              **************************/
509
510             /* COULOMB ELECTROSTATICS */
511             velec            = _mm256_mul_ps(qq21,rinv21);
512             felec            = _mm256_mul_ps(velec,rinvsq21);
513
514             /* Update potential sum for this i atom from the interaction with this j atom. */
515             velecsum         = _mm256_add_ps(velecsum,velec);
516
517             fscal            = felec;
518
519             /* Calculate temporary vectorial force */
520             tx               = _mm256_mul_ps(fscal,dx21);
521             ty               = _mm256_mul_ps(fscal,dy21);
522             tz               = _mm256_mul_ps(fscal,dz21);
523
524             /* Update vectorial force */
525             fix2             = _mm256_add_ps(fix2,tx);
526             fiy2             = _mm256_add_ps(fiy2,ty);
527             fiz2             = _mm256_add_ps(fiz2,tz);
528
529             fjx1             = _mm256_add_ps(fjx1,tx);
530             fjy1             = _mm256_add_ps(fjy1,ty);
531             fjz1             = _mm256_add_ps(fjz1,tz);
532
533             /**************************
534              * CALCULATE INTERACTIONS *
535              **************************/
536
537             /* COULOMB ELECTROSTATICS */
538             velec            = _mm256_mul_ps(qq22,rinv22);
539             felec            = _mm256_mul_ps(velec,rinvsq22);
540
541             /* Update potential sum for this i atom from the interaction with this j atom. */
542             velecsum         = _mm256_add_ps(velecsum,velec);
543
544             fscal            = felec;
545
546             /* Calculate temporary vectorial force */
547             tx               = _mm256_mul_ps(fscal,dx22);
548             ty               = _mm256_mul_ps(fscal,dy22);
549             tz               = _mm256_mul_ps(fscal,dz22);
550
551             /* Update vectorial force */
552             fix2             = _mm256_add_ps(fix2,tx);
553             fiy2             = _mm256_add_ps(fiy2,ty);
554             fiz2             = _mm256_add_ps(fiz2,tz);
555
556             fjx2             = _mm256_add_ps(fjx2,tx);
557             fjy2             = _mm256_add_ps(fjy2,ty);
558             fjz2             = _mm256_add_ps(fjz2,tz);
559
560             fjptrA             = f+j_coord_offsetA;
561             fjptrB             = f+j_coord_offsetB;
562             fjptrC             = f+j_coord_offsetC;
563             fjptrD             = f+j_coord_offsetD;
564             fjptrE             = f+j_coord_offsetE;
565             fjptrF             = f+j_coord_offsetF;
566             fjptrG             = f+j_coord_offsetG;
567             fjptrH             = f+j_coord_offsetH;
568
569             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
570                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
571
572             /* Inner loop uses 255 flops */
573         }
574
575         if(jidx<j_index_end)
576         {
577
578             /* Get j neighbor index, and coordinate index */
579             jnrlistA         = jjnr[jidx];
580             jnrlistB         = jjnr[jidx+1];
581             jnrlistC         = jjnr[jidx+2];
582             jnrlistD         = jjnr[jidx+3];
583             jnrlistE         = jjnr[jidx+4];
584             jnrlistF         = jjnr[jidx+5];
585             jnrlistG         = jjnr[jidx+6];
586             jnrlistH         = jjnr[jidx+7];
587             /* Sign of each element will be negative for non-real atoms.
588              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
589              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
590              */
591             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
592                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
593                                             
594             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
595             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
596             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
597             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
598             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
599             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
600             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
601             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
602             j_coord_offsetA  = DIM*jnrA;
603             j_coord_offsetB  = DIM*jnrB;
604             j_coord_offsetC  = DIM*jnrC;
605             j_coord_offsetD  = DIM*jnrD;
606             j_coord_offsetE  = DIM*jnrE;
607             j_coord_offsetF  = DIM*jnrF;
608             j_coord_offsetG  = DIM*jnrG;
609             j_coord_offsetH  = DIM*jnrH;
610
611             /* load j atom coordinates */
612             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
613                                                  x+j_coord_offsetC,x+j_coord_offsetD,
614                                                  x+j_coord_offsetE,x+j_coord_offsetF,
615                                                  x+j_coord_offsetG,x+j_coord_offsetH,
616                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
617
618             /* Calculate displacement vector */
619             dx00             = _mm256_sub_ps(ix0,jx0);
620             dy00             = _mm256_sub_ps(iy0,jy0);
621             dz00             = _mm256_sub_ps(iz0,jz0);
622             dx01             = _mm256_sub_ps(ix0,jx1);
623             dy01             = _mm256_sub_ps(iy0,jy1);
624             dz01             = _mm256_sub_ps(iz0,jz1);
625             dx02             = _mm256_sub_ps(ix0,jx2);
626             dy02             = _mm256_sub_ps(iy0,jy2);
627             dz02             = _mm256_sub_ps(iz0,jz2);
628             dx10             = _mm256_sub_ps(ix1,jx0);
629             dy10             = _mm256_sub_ps(iy1,jy0);
630             dz10             = _mm256_sub_ps(iz1,jz0);
631             dx11             = _mm256_sub_ps(ix1,jx1);
632             dy11             = _mm256_sub_ps(iy1,jy1);
633             dz11             = _mm256_sub_ps(iz1,jz1);
634             dx12             = _mm256_sub_ps(ix1,jx2);
635             dy12             = _mm256_sub_ps(iy1,jy2);
636             dz12             = _mm256_sub_ps(iz1,jz2);
637             dx20             = _mm256_sub_ps(ix2,jx0);
638             dy20             = _mm256_sub_ps(iy2,jy0);
639             dz20             = _mm256_sub_ps(iz2,jz0);
640             dx21             = _mm256_sub_ps(ix2,jx1);
641             dy21             = _mm256_sub_ps(iy2,jy1);
642             dz21             = _mm256_sub_ps(iz2,jz1);
643             dx22             = _mm256_sub_ps(ix2,jx2);
644             dy22             = _mm256_sub_ps(iy2,jy2);
645             dz22             = _mm256_sub_ps(iz2,jz2);
646
647             /* Calculate squared distance and things based on it */
648             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
649             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
650             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
651             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
652             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
653             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
654             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
655             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
656             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
657
658             rinv00           = avx256_invsqrt_f(rsq00);
659             rinv01           = avx256_invsqrt_f(rsq01);
660             rinv02           = avx256_invsqrt_f(rsq02);
661             rinv10           = avx256_invsqrt_f(rsq10);
662             rinv11           = avx256_invsqrt_f(rsq11);
663             rinv12           = avx256_invsqrt_f(rsq12);
664             rinv20           = avx256_invsqrt_f(rsq20);
665             rinv21           = avx256_invsqrt_f(rsq21);
666             rinv22           = avx256_invsqrt_f(rsq22);
667
668             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
669             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
670             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
671             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
672             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
673             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
674             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
675             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
676             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
677
678             fjx0             = _mm256_setzero_ps();
679             fjy0             = _mm256_setzero_ps();
680             fjz0             = _mm256_setzero_ps();
681             fjx1             = _mm256_setzero_ps();
682             fjy1             = _mm256_setzero_ps();
683             fjz1             = _mm256_setzero_ps();
684             fjx2             = _mm256_setzero_ps();
685             fjy2             = _mm256_setzero_ps();
686             fjz2             = _mm256_setzero_ps();
687
688             /**************************
689              * CALCULATE INTERACTIONS *
690              **************************/
691
692             /* COULOMB ELECTROSTATICS */
693             velec            = _mm256_mul_ps(qq00,rinv00);
694             felec            = _mm256_mul_ps(velec,rinvsq00);
695
696             /* LENNARD-JONES DISPERSION/REPULSION */
697
698             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
699             vvdw6            = _mm256_mul_ps(c6_00,rinvsix);
700             vvdw12           = _mm256_mul_ps(c12_00,_mm256_mul_ps(rinvsix,rinvsix));
701             vvdw             = _mm256_sub_ps( _mm256_mul_ps(vvdw12,one_twelfth) , _mm256_mul_ps(vvdw6,one_sixth) );
702             fvdw             = _mm256_mul_ps(_mm256_sub_ps(vvdw12,vvdw6),rinvsq00);
703
704             /* Update potential sum for this i atom from the interaction with this j atom. */
705             velec            = _mm256_andnot_ps(dummy_mask,velec);
706             velecsum         = _mm256_add_ps(velecsum,velec);
707             vvdw             = _mm256_andnot_ps(dummy_mask,vvdw);
708             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
709
710             fscal            = _mm256_add_ps(felec,fvdw);
711
712             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
713
714             /* Calculate temporary vectorial force */
715             tx               = _mm256_mul_ps(fscal,dx00);
716             ty               = _mm256_mul_ps(fscal,dy00);
717             tz               = _mm256_mul_ps(fscal,dz00);
718
719             /* Update vectorial force */
720             fix0             = _mm256_add_ps(fix0,tx);
721             fiy0             = _mm256_add_ps(fiy0,ty);
722             fiz0             = _mm256_add_ps(fiz0,tz);
723
724             fjx0             = _mm256_add_ps(fjx0,tx);
725             fjy0             = _mm256_add_ps(fjy0,ty);
726             fjz0             = _mm256_add_ps(fjz0,tz);
727
728             /**************************
729              * CALCULATE INTERACTIONS *
730              **************************/
731
732             /* COULOMB ELECTROSTATICS */
733             velec            = _mm256_mul_ps(qq01,rinv01);
734             felec            = _mm256_mul_ps(velec,rinvsq01);
735
736             /* Update potential sum for this i atom from the interaction with this j atom. */
737             velec            = _mm256_andnot_ps(dummy_mask,velec);
738             velecsum         = _mm256_add_ps(velecsum,velec);
739
740             fscal            = felec;
741
742             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
743
744             /* Calculate temporary vectorial force */
745             tx               = _mm256_mul_ps(fscal,dx01);
746             ty               = _mm256_mul_ps(fscal,dy01);
747             tz               = _mm256_mul_ps(fscal,dz01);
748
749             /* Update vectorial force */
750             fix0             = _mm256_add_ps(fix0,tx);
751             fiy0             = _mm256_add_ps(fiy0,ty);
752             fiz0             = _mm256_add_ps(fiz0,tz);
753
754             fjx1             = _mm256_add_ps(fjx1,tx);
755             fjy1             = _mm256_add_ps(fjy1,ty);
756             fjz1             = _mm256_add_ps(fjz1,tz);
757
758             /**************************
759              * CALCULATE INTERACTIONS *
760              **************************/
761
762             /* COULOMB ELECTROSTATICS */
763             velec            = _mm256_mul_ps(qq02,rinv02);
764             felec            = _mm256_mul_ps(velec,rinvsq02);
765
766             /* Update potential sum for this i atom from the interaction with this j atom. */
767             velec            = _mm256_andnot_ps(dummy_mask,velec);
768             velecsum         = _mm256_add_ps(velecsum,velec);
769
770             fscal            = felec;
771
772             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
773
774             /* Calculate temporary vectorial force */
775             tx               = _mm256_mul_ps(fscal,dx02);
776             ty               = _mm256_mul_ps(fscal,dy02);
777             tz               = _mm256_mul_ps(fscal,dz02);
778
779             /* Update vectorial force */
780             fix0             = _mm256_add_ps(fix0,tx);
781             fiy0             = _mm256_add_ps(fiy0,ty);
782             fiz0             = _mm256_add_ps(fiz0,tz);
783
784             fjx2             = _mm256_add_ps(fjx2,tx);
785             fjy2             = _mm256_add_ps(fjy2,ty);
786             fjz2             = _mm256_add_ps(fjz2,tz);
787
788             /**************************
789              * CALCULATE INTERACTIONS *
790              **************************/
791
792             /* COULOMB ELECTROSTATICS */
793             velec            = _mm256_mul_ps(qq10,rinv10);
794             felec            = _mm256_mul_ps(velec,rinvsq10);
795
796             /* Update potential sum for this i atom from the interaction with this j atom. */
797             velec            = _mm256_andnot_ps(dummy_mask,velec);
798             velecsum         = _mm256_add_ps(velecsum,velec);
799
800             fscal            = felec;
801
802             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
803
804             /* Calculate temporary vectorial force */
805             tx               = _mm256_mul_ps(fscal,dx10);
806             ty               = _mm256_mul_ps(fscal,dy10);
807             tz               = _mm256_mul_ps(fscal,dz10);
808
809             /* Update vectorial force */
810             fix1             = _mm256_add_ps(fix1,tx);
811             fiy1             = _mm256_add_ps(fiy1,ty);
812             fiz1             = _mm256_add_ps(fiz1,tz);
813
814             fjx0             = _mm256_add_ps(fjx0,tx);
815             fjy0             = _mm256_add_ps(fjy0,ty);
816             fjz0             = _mm256_add_ps(fjz0,tz);
817
818             /**************************
819              * CALCULATE INTERACTIONS *
820              **************************/
821
822             /* COULOMB ELECTROSTATICS */
823             velec            = _mm256_mul_ps(qq11,rinv11);
824             felec            = _mm256_mul_ps(velec,rinvsq11);
825
826             /* Update potential sum for this i atom from the interaction with this j atom. */
827             velec            = _mm256_andnot_ps(dummy_mask,velec);
828             velecsum         = _mm256_add_ps(velecsum,velec);
829
830             fscal            = felec;
831
832             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
833
834             /* Calculate temporary vectorial force */
835             tx               = _mm256_mul_ps(fscal,dx11);
836             ty               = _mm256_mul_ps(fscal,dy11);
837             tz               = _mm256_mul_ps(fscal,dz11);
838
839             /* Update vectorial force */
840             fix1             = _mm256_add_ps(fix1,tx);
841             fiy1             = _mm256_add_ps(fiy1,ty);
842             fiz1             = _mm256_add_ps(fiz1,tz);
843
844             fjx1             = _mm256_add_ps(fjx1,tx);
845             fjy1             = _mm256_add_ps(fjy1,ty);
846             fjz1             = _mm256_add_ps(fjz1,tz);
847
848             /**************************
849              * CALCULATE INTERACTIONS *
850              **************************/
851
852             /* COULOMB ELECTROSTATICS */
853             velec            = _mm256_mul_ps(qq12,rinv12);
854             felec            = _mm256_mul_ps(velec,rinvsq12);
855
856             /* Update potential sum for this i atom from the interaction with this j atom. */
857             velec            = _mm256_andnot_ps(dummy_mask,velec);
858             velecsum         = _mm256_add_ps(velecsum,velec);
859
860             fscal            = felec;
861
862             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
863
864             /* Calculate temporary vectorial force */
865             tx               = _mm256_mul_ps(fscal,dx12);
866             ty               = _mm256_mul_ps(fscal,dy12);
867             tz               = _mm256_mul_ps(fscal,dz12);
868
869             /* Update vectorial force */
870             fix1             = _mm256_add_ps(fix1,tx);
871             fiy1             = _mm256_add_ps(fiy1,ty);
872             fiz1             = _mm256_add_ps(fiz1,tz);
873
874             fjx2             = _mm256_add_ps(fjx2,tx);
875             fjy2             = _mm256_add_ps(fjy2,ty);
876             fjz2             = _mm256_add_ps(fjz2,tz);
877
878             /**************************
879              * CALCULATE INTERACTIONS *
880              **************************/
881
882             /* COULOMB ELECTROSTATICS */
883             velec            = _mm256_mul_ps(qq20,rinv20);
884             felec            = _mm256_mul_ps(velec,rinvsq20);
885
886             /* Update potential sum for this i atom from the interaction with this j atom. */
887             velec            = _mm256_andnot_ps(dummy_mask,velec);
888             velecsum         = _mm256_add_ps(velecsum,velec);
889
890             fscal            = felec;
891
892             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
893
894             /* Calculate temporary vectorial force */
895             tx               = _mm256_mul_ps(fscal,dx20);
896             ty               = _mm256_mul_ps(fscal,dy20);
897             tz               = _mm256_mul_ps(fscal,dz20);
898
899             /* Update vectorial force */
900             fix2             = _mm256_add_ps(fix2,tx);
901             fiy2             = _mm256_add_ps(fiy2,ty);
902             fiz2             = _mm256_add_ps(fiz2,tz);
903
904             fjx0             = _mm256_add_ps(fjx0,tx);
905             fjy0             = _mm256_add_ps(fjy0,ty);
906             fjz0             = _mm256_add_ps(fjz0,tz);
907
908             /**************************
909              * CALCULATE INTERACTIONS *
910              **************************/
911
912             /* COULOMB ELECTROSTATICS */
913             velec            = _mm256_mul_ps(qq21,rinv21);
914             felec            = _mm256_mul_ps(velec,rinvsq21);
915
916             /* Update potential sum for this i atom from the interaction with this j atom. */
917             velec            = _mm256_andnot_ps(dummy_mask,velec);
918             velecsum         = _mm256_add_ps(velecsum,velec);
919
920             fscal            = felec;
921
922             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
923
924             /* Calculate temporary vectorial force */
925             tx               = _mm256_mul_ps(fscal,dx21);
926             ty               = _mm256_mul_ps(fscal,dy21);
927             tz               = _mm256_mul_ps(fscal,dz21);
928
929             /* Update vectorial force */
930             fix2             = _mm256_add_ps(fix2,tx);
931             fiy2             = _mm256_add_ps(fiy2,ty);
932             fiz2             = _mm256_add_ps(fiz2,tz);
933
934             fjx1             = _mm256_add_ps(fjx1,tx);
935             fjy1             = _mm256_add_ps(fjy1,ty);
936             fjz1             = _mm256_add_ps(fjz1,tz);
937
938             /**************************
939              * CALCULATE INTERACTIONS *
940              **************************/
941
942             /* COULOMB ELECTROSTATICS */
943             velec            = _mm256_mul_ps(qq22,rinv22);
944             felec            = _mm256_mul_ps(velec,rinvsq22);
945
946             /* Update potential sum for this i atom from the interaction with this j atom. */
947             velec            = _mm256_andnot_ps(dummy_mask,velec);
948             velecsum         = _mm256_add_ps(velecsum,velec);
949
950             fscal            = felec;
951
952             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
953
954             /* Calculate temporary vectorial force */
955             tx               = _mm256_mul_ps(fscal,dx22);
956             ty               = _mm256_mul_ps(fscal,dy22);
957             tz               = _mm256_mul_ps(fscal,dz22);
958
959             /* Update vectorial force */
960             fix2             = _mm256_add_ps(fix2,tx);
961             fiy2             = _mm256_add_ps(fiy2,ty);
962             fiz2             = _mm256_add_ps(fiz2,tz);
963
964             fjx2             = _mm256_add_ps(fjx2,tx);
965             fjy2             = _mm256_add_ps(fjy2,ty);
966             fjz2             = _mm256_add_ps(fjz2,tz);
967
968             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
969             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
970             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
971             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
972             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
973             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
974             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
975             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
976
977             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
978                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
979
980             /* Inner loop uses 255 flops */
981         }
982
983         /* End of innermost loop */
984
985         gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
986                                                  f+i_coord_offset,fshift+i_shift_offset);
987
988         ggid                        = gid[iidx];
989         /* Update potential energies */
990         gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
991         gmx_mm256_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
992
993         /* Increment number of inner iterations */
994         inneriter                  += j_index_end - j_index_start;
995
996         /* Outer loop uses 20 flops */
997     }
998
999     /* Increment number of outer iterations */
1000     outeriter        += nri;
1001
1002     /* Update outer/inner flops */
1003
1004     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*255);
1005 }
1006 /*
1007  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_256_single
1008  * Electrostatics interaction: Coulomb
1009  * VdW interaction:            LennardJones
1010  * Geometry:                   Water3-Water3
1011  * Calculate force/pot:        Force
1012  */
1013 void
1014 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_256_single
1015                     (t_nblist                    * gmx_restrict       nlist,
1016                      rvec                        * gmx_restrict          xx,
1017                      rvec                        * gmx_restrict          ff,
1018                      struct t_forcerec           * gmx_restrict          fr,
1019                      t_mdatoms                   * gmx_restrict     mdatoms,
1020                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1021                      t_nrnb                      * gmx_restrict        nrnb)
1022 {
1023     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
1024      * just 0 for non-waters.
1025      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
1026      * jnr indices corresponding to data put in the four positions in the SIMD register.
1027      */
1028     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
1029     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1030     int              jnrA,jnrB,jnrC,jnrD;
1031     int              jnrE,jnrF,jnrG,jnrH;
1032     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1033     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1034     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1035     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
1036     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
1037     real             rcutoff_scalar;
1038     real             *shiftvec,*fshift,*x,*f;
1039     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
1040     real             scratch[4*DIM];
1041     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1042     real *           vdwioffsetptr0;
1043     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1044     real *           vdwioffsetptr1;
1045     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1046     real *           vdwioffsetptr2;
1047     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1048     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
1049     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1050     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
1051     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1052     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
1053     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1054     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1055     __m256           dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1056     __m256           dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1057     __m256           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1058     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1059     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1060     __m256           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1061     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1062     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1063     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
1064     real             *charge;
1065     int              nvdwtype;
1066     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1067     int              *vdwtype;
1068     real             *vdwparam;
1069     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
1070     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
1071     __m256           dummy_mask,cutoff_mask;
1072     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
1073     __m256           one     = _mm256_set1_ps(1.0);
1074     __m256           two     = _mm256_set1_ps(2.0);
1075     x                = xx[0];
1076     f                = ff[0];
1077
1078     nri              = nlist->nri;
1079     iinr             = nlist->iinr;
1080     jindex           = nlist->jindex;
1081     jjnr             = nlist->jjnr;
1082     shiftidx         = nlist->shift;
1083     gid              = nlist->gid;
1084     shiftvec         = fr->shift_vec[0];
1085     fshift           = fr->fshift[0];
1086     facel            = _mm256_set1_ps(fr->ic->epsfac);
1087     charge           = mdatoms->chargeA;
1088     nvdwtype         = fr->ntype;
1089     vdwparam         = fr->nbfp;
1090     vdwtype          = mdatoms->typeA;
1091
1092     /* Setup water-specific parameters */
1093     inr              = nlist->iinr[0];
1094     iq0              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+0]));
1095     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
1096     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
1097     vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
1098
1099     jq0              = _mm256_set1_ps(charge[inr+0]);
1100     jq1              = _mm256_set1_ps(charge[inr+1]);
1101     jq2              = _mm256_set1_ps(charge[inr+2]);
1102     vdwjidx0A        = 2*vdwtype[inr+0];
1103     qq00             = _mm256_mul_ps(iq0,jq0);
1104     c6_00            = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
1105     c12_00           = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
1106     qq01             = _mm256_mul_ps(iq0,jq1);
1107     qq02             = _mm256_mul_ps(iq0,jq2);
1108     qq10             = _mm256_mul_ps(iq1,jq0);
1109     qq11             = _mm256_mul_ps(iq1,jq1);
1110     qq12             = _mm256_mul_ps(iq1,jq2);
1111     qq20             = _mm256_mul_ps(iq2,jq0);
1112     qq21             = _mm256_mul_ps(iq2,jq1);
1113     qq22             = _mm256_mul_ps(iq2,jq2);
1114
1115     /* Avoid stupid compiler warnings */
1116     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
1117     j_coord_offsetA = 0;
1118     j_coord_offsetB = 0;
1119     j_coord_offsetC = 0;
1120     j_coord_offsetD = 0;
1121     j_coord_offsetE = 0;
1122     j_coord_offsetF = 0;
1123     j_coord_offsetG = 0;
1124     j_coord_offsetH = 0;
1125
1126     outeriter        = 0;
1127     inneriter        = 0;
1128
1129     for(iidx=0;iidx<4*DIM;iidx++)
1130     {
1131         scratch[iidx] = 0.0;
1132     }
1133
1134     /* Start outer loop over neighborlists */
1135     for(iidx=0; iidx<nri; iidx++)
1136     {
1137         /* Load shift vector for this list */
1138         i_shift_offset   = DIM*shiftidx[iidx];
1139
1140         /* Load limits for loop over neighbors */
1141         j_index_start    = jindex[iidx];
1142         j_index_end      = jindex[iidx+1];
1143
1144         /* Get outer coordinate index */
1145         inr              = iinr[iidx];
1146         i_coord_offset   = DIM*inr;
1147
1148         /* Load i particle coords and add shift vector */
1149         gmx_mm256_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1150                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1151
1152         fix0             = _mm256_setzero_ps();
1153         fiy0             = _mm256_setzero_ps();
1154         fiz0             = _mm256_setzero_ps();
1155         fix1             = _mm256_setzero_ps();
1156         fiy1             = _mm256_setzero_ps();
1157         fiz1             = _mm256_setzero_ps();
1158         fix2             = _mm256_setzero_ps();
1159         fiy2             = _mm256_setzero_ps();
1160         fiz2             = _mm256_setzero_ps();
1161
1162         /* Start inner kernel loop */
1163         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
1164         {
1165
1166             /* Get j neighbor index, and coordinate index */
1167             jnrA             = jjnr[jidx];
1168             jnrB             = jjnr[jidx+1];
1169             jnrC             = jjnr[jidx+2];
1170             jnrD             = jjnr[jidx+3];
1171             jnrE             = jjnr[jidx+4];
1172             jnrF             = jjnr[jidx+5];
1173             jnrG             = jjnr[jidx+6];
1174             jnrH             = jjnr[jidx+7];
1175             j_coord_offsetA  = DIM*jnrA;
1176             j_coord_offsetB  = DIM*jnrB;
1177             j_coord_offsetC  = DIM*jnrC;
1178             j_coord_offsetD  = DIM*jnrD;
1179             j_coord_offsetE  = DIM*jnrE;
1180             j_coord_offsetF  = DIM*jnrF;
1181             j_coord_offsetG  = DIM*jnrG;
1182             j_coord_offsetH  = DIM*jnrH;
1183
1184             /* load j atom coordinates */
1185             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1186                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1187                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1188                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1189                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1190
1191             /* Calculate displacement vector */
1192             dx00             = _mm256_sub_ps(ix0,jx0);
1193             dy00             = _mm256_sub_ps(iy0,jy0);
1194             dz00             = _mm256_sub_ps(iz0,jz0);
1195             dx01             = _mm256_sub_ps(ix0,jx1);
1196             dy01             = _mm256_sub_ps(iy0,jy1);
1197             dz01             = _mm256_sub_ps(iz0,jz1);
1198             dx02             = _mm256_sub_ps(ix0,jx2);
1199             dy02             = _mm256_sub_ps(iy0,jy2);
1200             dz02             = _mm256_sub_ps(iz0,jz2);
1201             dx10             = _mm256_sub_ps(ix1,jx0);
1202             dy10             = _mm256_sub_ps(iy1,jy0);
1203             dz10             = _mm256_sub_ps(iz1,jz0);
1204             dx11             = _mm256_sub_ps(ix1,jx1);
1205             dy11             = _mm256_sub_ps(iy1,jy1);
1206             dz11             = _mm256_sub_ps(iz1,jz1);
1207             dx12             = _mm256_sub_ps(ix1,jx2);
1208             dy12             = _mm256_sub_ps(iy1,jy2);
1209             dz12             = _mm256_sub_ps(iz1,jz2);
1210             dx20             = _mm256_sub_ps(ix2,jx0);
1211             dy20             = _mm256_sub_ps(iy2,jy0);
1212             dz20             = _mm256_sub_ps(iz2,jz0);
1213             dx21             = _mm256_sub_ps(ix2,jx1);
1214             dy21             = _mm256_sub_ps(iy2,jy1);
1215             dz21             = _mm256_sub_ps(iz2,jz1);
1216             dx22             = _mm256_sub_ps(ix2,jx2);
1217             dy22             = _mm256_sub_ps(iy2,jy2);
1218             dz22             = _mm256_sub_ps(iz2,jz2);
1219
1220             /* Calculate squared distance and things based on it */
1221             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1222             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1223             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1224             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1225             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1226             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1227             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1228             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1229             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1230
1231             rinv00           = avx256_invsqrt_f(rsq00);
1232             rinv01           = avx256_invsqrt_f(rsq01);
1233             rinv02           = avx256_invsqrt_f(rsq02);
1234             rinv10           = avx256_invsqrt_f(rsq10);
1235             rinv11           = avx256_invsqrt_f(rsq11);
1236             rinv12           = avx256_invsqrt_f(rsq12);
1237             rinv20           = avx256_invsqrt_f(rsq20);
1238             rinv21           = avx256_invsqrt_f(rsq21);
1239             rinv22           = avx256_invsqrt_f(rsq22);
1240
1241             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
1242             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
1243             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
1244             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
1245             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1246             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1247             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
1248             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1249             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1250
1251             fjx0             = _mm256_setzero_ps();
1252             fjy0             = _mm256_setzero_ps();
1253             fjz0             = _mm256_setzero_ps();
1254             fjx1             = _mm256_setzero_ps();
1255             fjy1             = _mm256_setzero_ps();
1256             fjz1             = _mm256_setzero_ps();
1257             fjx2             = _mm256_setzero_ps();
1258             fjy2             = _mm256_setzero_ps();
1259             fjz2             = _mm256_setzero_ps();
1260
1261             /**************************
1262              * CALCULATE INTERACTIONS *
1263              **************************/
1264
1265             /* COULOMB ELECTROSTATICS */
1266             velec            = _mm256_mul_ps(qq00,rinv00);
1267             felec            = _mm256_mul_ps(velec,rinvsq00);
1268
1269             /* LENNARD-JONES DISPERSION/REPULSION */
1270
1271             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1272             fvdw             = _mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_00,rinvsix),c6_00),_mm256_mul_ps(rinvsix,rinvsq00));
1273
1274             fscal            = _mm256_add_ps(felec,fvdw);
1275
1276             /* Calculate temporary vectorial force */
1277             tx               = _mm256_mul_ps(fscal,dx00);
1278             ty               = _mm256_mul_ps(fscal,dy00);
1279             tz               = _mm256_mul_ps(fscal,dz00);
1280
1281             /* Update vectorial force */
1282             fix0             = _mm256_add_ps(fix0,tx);
1283             fiy0             = _mm256_add_ps(fiy0,ty);
1284             fiz0             = _mm256_add_ps(fiz0,tz);
1285
1286             fjx0             = _mm256_add_ps(fjx0,tx);
1287             fjy0             = _mm256_add_ps(fjy0,ty);
1288             fjz0             = _mm256_add_ps(fjz0,tz);
1289
1290             /**************************
1291              * CALCULATE INTERACTIONS *
1292              **************************/
1293
1294             /* COULOMB ELECTROSTATICS */
1295             velec            = _mm256_mul_ps(qq01,rinv01);
1296             felec            = _mm256_mul_ps(velec,rinvsq01);
1297
1298             fscal            = felec;
1299
1300             /* Calculate temporary vectorial force */
1301             tx               = _mm256_mul_ps(fscal,dx01);
1302             ty               = _mm256_mul_ps(fscal,dy01);
1303             tz               = _mm256_mul_ps(fscal,dz01);
1304
1305             /* Update vectorial force */
1306             fix0             = _mm256_add_ps(fix0,tx);
1307             fiy0             = _mm256_add_ps(fiy0,ty);
1308             fiz0             = _mm256_add_ps(fiz0,tz);
1309
1310             fjx1             = _mm256_add_ps(fjx1,tx);
1311             fjy1             = _mm256_add_ps(fjy1,ty);
1312             fjz1             = _mm256_add_ps(fjz1,tz);
1313
1314             /**************************
1315              * CALCULATE INTERACTIONS *
1316              **************************/
1317
1318             /* COULOMB ELECTROSTATICS */
1319             velec            = _mm256_mul_ps(qq02,rinv02);
1320             felec            = _mm256_mul_ps(velec,rinvsq02);
1321
1322             fscal            = felec;
1323
1324             /* Calculate temporary vectorial force */
1325             tx               = _mm256_mul_ps(fscal,dx02);
1326             ty               = _mm256_mul_ps(fscal,dy02);
1327             tz               = _mm256_mul_ps(fscal,dz02);
1328
1329             /* Update vectorial force */
1330             fix0             = _mm256_add_ps(fix0,tx);
1331             fiy0             = _mm256_add_ps(fiy0,ty);
1332             fiz0             = _mm256_add_ps(fiz0,tz);
1333
1334             fjx2             = _mm256_add_ps(fjx2,tx);
1335             fjy2             = _mm256_add_ps(fjy2,ty);
1336             fjz2             = _mm256_add_ps(fjz2,tz);
1337
1338             /**************************
1339              * CALCULATE INTERACTIONS *
1340              **************************/
1341
1342             /* COULOMB ELECTROSTATICS */
1343             velec            = _mm256_mul_ps(qq10,rinv10);
1344             felec            = _mm256_mul_ps(velec,rinvsq10);
1345
1346             fscal            = felec;
1347
1348             /* Calculate temporary vectorial force */
1349             tx               = _mm256_mul_ps(fscal,dx10);
1350             ty               = _mm256_mul_ps(fscal,dy10);
1351             tz               = _mm256_mul_ps(fscal,dz10);
1352
1353             /* Update vectorial force */
1354             fix1             = _mm256_add_ps(fix1,tx);
1355             fiy1             = _mm256_add_ps(fiy1,ty);
1356             fiz1             = _mm256_add_ps(fiz1,tz);
1357
1358             fjx0             = _mm256_add_ps(fjx0,tx);
1359             fjy0             = _mm256_add_ps(fjy0,ty);
1360             fjz0             = _mm256_add_ps(fjz0,tz);
1361
1362             /**************************
1363              * CALCULATE INTERACTIONS *
1364              **************************/
1365
1366             /* COULOMB ELECTROSTATICS */
1367             velec            = _mm256_mul_ps(qq11,rinv11);
1368             felec            = _mm256_mul_ps(velec,rinvsq11);
1369
1370             fscal            = felec;
1371
1372             /* Calculate temporary vectorial force */
1373             tx               = _mm256_mul_ps(fscal,dx11);
1374             ty               = _mm256_mul_ps(fscal,dy11);
1375             tz               = _mm256_mul_ps(fscal,dz11);
1376
1377             /* Update vectorial force */
1378             fix1             = _mm256_add_ps(fix1,tx);
1379             fiy1             = _mm256_add_ps(fiy1,ty);
1380             fiz1             = _mm256_add_ps(fiz1,tz);
1381
1382             fjx1             = _mm256_add_ps(fjx1,tx);
1383             fjy1             = _mm256_add_ps(fjy1,ty);
1384             fjz1             = _mm256_add_ps(fjz1,tz);
1385
1386             /**************************
1387              * CALCULATE INTERACTIONS *
1388              **************************/
1389
1390             /* COULOMB ELECTROSTATICS */
1391             velec            = _mm256_mul_ps(qq12,rinv12);
1392             felec            = _mm256_mul_ps(velec,rinvsq12);
1393
1394             fscal            = felec;
1395
1396             /* Calculate temporary vectorial force */
1397             tx               = _mm256_mul_ps(fscal,dx12);
1398             ty               = _mm256_mul_ps(fscal,dy12);
1399             tz               = _mm256_mul_ps(fscal,dz12);
1400
1401             /* Update vectorial force */
1402             fix1             = _mm256_add_ps(fix1,tx);
1403             fiy1             = _mm256_add_ps(fiy1,ty);
1404             fiz1             = _mm256_add_ps(fiz1,tz);
1405
1406             fjx2             = _mm256_add_ps(fjx2,tx);
1407             fjy2             = _mm256_add_ps(fjy2,ty);
1408             fjz2             = _mm256_add_ps(fjz2,tz);
1409
1410             /**************************
1411              * CALCULATE INTERACTIONS *
1412              **************************/
1413
1414             /* COULOMB ELECTROSTATICS */
1415             velec            = _mm256_mul_ps(qq20,rinv20);
1416             felec            = _mm256_mul_ps(velec,rinvsq20);
1417
1418             fscal            = felec;
1419
1420             /* Calculate temporary vectorial force */
1421             tx               = _mm256_mul_ps(fscal,dx20);
1422             ty               = _mm256_mul_ps(fscal,dy20);
1423             tz               = _mm256_mul_ps(fscal,dz20);
1424
1425             /* Update vectorial force */
1426             fix2             = _mm256_add_ps(fix2,tx);
1427             fiy2             = _mm256_add_ps(fiy2,ty);
1428             fiz2             = _mm256_add_ps(fiz2,tz);
1429
1430             fjx0             = _mm256_add_ps(fjx0,tx);
1431             fjy0             = _mm256_add_ps(fjy0,ty);
1432             fjz0             = _mm256_add_ps(fjz0,tz);
1433
1434             /**************************
1435              * CALCULATE INTERACTIONS *
1436              **************************/
1437
1438             /* COULOMB ELECTROSTATICS */
1439             velec            = _mm256_mul_ps(qq21,rinv21);
1440             felec            = _mm256_mul_ps(velec,rinvsq21);
1441
1442             fscal            = felec;
1443
1444             /* Calculate temporary vectorial force */
1445             tx               = _mm256_mul_ps(fscal,dx21);
1446             ty               = _mm256_mul_ps(fscal,dy21);
1447             tz               = _mm256_mul_ps(fscal,dz21);
1448
1449             /* Update vectorial force */
1450             fix2             = _mm256_add_ps(fix2,tx);
1451             fiy2             = _mm256_add_ps(fiy2,ty);
1452             fiz2             = _mm256_add_ps(fiz2,tz);
1453
1454             fjx1             = _mm256_add_ps(fjx1,tx);
1455             fjy1             = _mm256_add_ps(fjy1,ty);
1456             fjz1             = _mm256_add_ps(fjz1,tz);
1457
1458             /**************************
1459              * CALCULATE INTERACTIONS *
1460              **************************/
1461
1462             /* COULOMB ELECTROSTATICS */
1463             velec            = _mm256_mul_ps(qq22,rinv22);
1464             felec            = _mm256_mul_ps(velec,rinvsq22);
1465
1466             fscal            = felec;
1467
1468             /* Calculate temporary vectorial force */
1469             tx               = _mm256_mul_ps(fscal,dx22);
1470             ty               = _mm256_mul_ps(fscal,dy22);
1471             tz               = _mm256_mul_ps(fscal,dz22);
1472
1473             /* Update vectorial force */
1474             fix2             = _mm256_add_ps(fix2,tx);
1475             fiy2             = _mm256_add_ps(fiy2,ty);
1476             fiz2             = _mm256_add_ps(fiz2,tz);
1477
1478             fjx2             = _mm256_add_ps(fjx2,tx);
1479             fjy2             = _mm256_add_ps(fjy2,ty);
1480             fjz2             = _mm256_add_ps(fjz2,tz);
1481
1482             fjptrA             = f+j_coord_offsetA;
1483             fjptrB             = f+j_coord_offsetB;
1484             fjptrC             = f+j_coord_offsetC;
1485             fjptrD             = f+j_coord_offsetD;
1486             fjptrE             = f+j_coord_offsetE;
1487             fjptrF             = f+j_coord_offsetF;
1488             fjptrG             = f+j_coord_offsetG;
1489             fjptrH             = f+j_coord_offsetH;
1490
1491             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1492                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1493
1494             /* Inner loop uses 241 flops */
1495         }
1496
1497         if(jidx<j_index_end)
1498         {
1499
1500             /* Get j neighbor index, and coordinate index */
1501             jnrlistA         = jjnr[jidx];
1502             jnrlistB         = jjnr[jidx+1];
1503             jnrlistC         = jjnr[jidx+2];
1504             jnrlistD         = jjnr[jidx+3];
1505             jnrlistE         = jjnr[jidx+4];
1506             jnrlistF         = jjnr[jidx+5];
1507             jnrlistG         = jjnr[jidx+6];
1508             jnrlistH         = jjnr[jidx+7];
1509             /* Sign of each element will be negative for non-real atoms.
1510              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1511              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1512              */
1513             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
1514                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
1515                                             
1516             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
1517             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
1518             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
1519             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
1520             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
1521             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
1522             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
1523             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
1524             j_coord_offsetA  = DIM*jnrA;
1525             j_coord_offsetB  = DIM*jnrB;
1526             j_coord_offsetC  = DIM*jnrC;
1527             j_coord_offsetD  = DIM*jnrD;
1528             j_coord_offsetE  = DIM*jnrE;
1529             j_coord_offsetF  = DIM*jnrF;
1530             j_coord_offsetG  = DIM*jnrG;
1531             j_coord_offsetH  = DIM*jnrH;
1532
1533             /* load j atom coordinates */
1534             gmx_mm256_load_3rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1535                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1536                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1537                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1538                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1539
1540             /* Calculate displacement vector */
1541             dx00             = _mm256_sub_ps(ix0,jx0);
1542             dy00             = _mm256_sub_ps(iy0,jy0);
1543             dz00             = _mm256_sub_ps(iz0,jz0);
1544             dx01             = _mm256_sub_ps(ix0,jx1);
1545             dy01             = _mm256_sub_ps(iy0,jy1);
1546             dz01             = _mm256_sub_ps(iz0,jz1);
1547             dx02             = _mm256_sub_ps(ix0,jx2);
1548             dy02             = _mm256_sub_ps(iy0,jy2);
1549             dz02             = _mm256_sub_ps(iz0,jz2);
1550             dx10             = _mm256_sub_ps(ix1,jx0);
1551             dy10             = _mm256_sub_ps(iy1,jy0);
1552             dz10             = _mm256_sub_ps(iz1,jz0);
1553             dx11             = _mm256_sub_ps(ix1,jx1);
1554             dy11             = _mm256_sub_ps(iy1,jy1);
1555             dz11             = _mm256_sub_ps(iz1,jz1);
1556             dx12             = _mm256_sub_ps(ix1,jx2);
1557             dy12             = _mm256_sub_ps(iy1,jy2);
1558             dz12             = _mm256_sub_ps(iz1,jz2);
1559             dx20             = _mm256_sub_ps(ix2,jx0);
1560             dy20             = _mm256_sub_ps(iy2,jy0);
1561             dz20             = _mm256_sub_ps(iz2,jz0);
1562             dx21             = _mm256_sub_ps(ix2,jx1);
1563             dy21             = _mm256_sub_ps(iy2,jy1);
1564             dz21             = _mm256_sub_ps(iz2,jz1);
1565             dx22             = _mm256_sub_ps(ix2,jx2);
1566             dy22             = _mm256_sub_ps(iy2,jy2);
1567             dz22             = _mm256_sub_ps(iz2,jz2);
1568
1569             /* Calculate squared distance and things based on it */
1570             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1571             rsq01            = gmx_mm256_calc_rsq_ps(dx01,dy01,dz01);
1572             rsq02            = gmx_mm256_calc_rsq_ps(dx02,dy02,dz02);
1573             rsq10            = gmx_mm256_calc_rsq_ps(dx10,dy10,dz10);
1574             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1575             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1576             rsq20            = gmx_mm256_calc_rsq_ps(dx20,dy20,dz20);
1577             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1578             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1579
1580             rinv00           = avx256_invsqrt_f(rsq00);
1581             rinv01           = avx256_invsqrt_f(rsq01);
1582             rinv02           = avx256_invsqrt_f(rsq02);
1583             rinv10           = avx256_invsqrt_f(rsq10);
1584             rinv11           = avx256_invsqrt_f(rsq11);
1585             rinv12           = avx256_invsqrt_f(rsq12);
1586             rinv20           = avx256_invsqrt_f(rsq20);
1587             rinv21           = avx256_invsqrt_f(rsq21);
1588             rinv22           = avx256_invsqrt_f(rsq22);
1589
1590             rinvsq00         = _mm256_mul_ps(rinv00,rinv00);
1591             rinvsq01         = _mm256_mul_ps(rinv01,rinv01);
1592             rinvsq02         = _mm256_mul_ps(rinv02,rinv02);
1593             rinvsq10         = _mm256_mul_ps(rinv10,rinv10);
1594             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1595             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1596             rinvsq20         = _mm256_mul_ps(rinv20,rinv20);
1597             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1598             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1599
1600             fjx0             = _mm256_setzero_ps();
1601             fjy0             = _mm256_setzero_ps();
1602             fjz0             = _mm256_setzero_ps();
1603             fjx1             = _mm256_setzero_ps();
1604             fjy1             = _mm256_setzero_ps();
1605             fjz1             = _mm256_setzero_ps();
1606             fjx2             = _mm256_setzero_ps();
1607             fjy2             = _mm256_setzero_ps();
1608             fjz2             = _mm256_setzero_ps();
1609
1610             /**************************
1611              * CALCULATE INTERACTIONS *
1612              **************************/
1613
1614             /* COULOMB ELECTROSTATICS */
1615             velec            = _mm256_mul_ps(qq00,rinv00);
1616             felec            = _mm256_mul_ps(velec,rinvsq00);
1617
1618             /* LENNARD-JONES DISPERSION/REPULSION */
1619
1620             rinvsix          = _mm256_mul_ps(_mm256_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1621             fvdw             = _mm256_mul_ps(_mm256_sub_ps(_mm256_mul_ps(c12_00,rinvsix),c6_00),_mm256_mul_ps(rinvsix,rinvsq00));
1622
1623             fscal            = _mm256_add_ps(felec,fvdw);
1624
1625             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1626
1627             /* Calculate temporary vectorial force */
1628             tx               = _mm256_mul_ps(fscal,dx00);
1629             ty               = _mm256_mul_ps(fscal,dy00);
1630             tz               = _mm256_mul_ps(fscal,dz00);
1631
1632             /* Update vectorial force */
1633             fix0             = _mm256_add_ps(fix0,tx);
1634             fiy0             = _mm256_add_ps(fiy0,ty);
1635             fiz0             = _mm256_add_ps(fiz0,tz);
1636
1637             fjx0             = _mm256_add_ps(fjx0,tx);
1638             fjy0             = _mm256_add_ps(fjy0,ty);
1639             fjz0             = _mm256_add_ps(fjz0,tz);
1640
1641             /**************************
1642              * CALCULATE INTERACTIONS *
1643              **************************/
1644
1645             /* COULOMB ELECTROSTATICS */
1646             velec            = _mm256_mul_ps(qq01,rinv01);
1647             felec            = _mm256_mul_ps(velec,rinvsq01);
1648
1649             fscal            = felec;
1650
1651             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1652
1653             /* Calculate temporary vectorial force */
1654             tx               = _mm256_mul_ps(fscal,dx01);
1655             ty               = _mm256_mul_ps(fscal,dy01);
1656             tz               = _mm256_mul_ps(fscal,dz01);
1657
1658             /* Update vectorial force */
1659             fix0             = _mm256_add_ps(fix0,tx);
1660             fiy0             = _mm256_add_ps(fiy0,ty);
1661             fiz0             = _mm256_add_ps(fiz0,tz);
1662
1663             fjx1             = _mm256_add_ps(fjx1,tx);
1664             fjy1             = _mm256_add_ps(fjy1,ty);
1665             fjz1             = _mm256_add_ps(fjz1,tz);
1666
1667             /**************************
1668              * CALCULATE INTERACTIONS *
1669              **************************/
1670
1671             /* COULOMB ELECTROSTATICS */
1672             velec            = _mm256_mul_ps(qq02,rinv02);
1673             felec            = _mm256_mul_ps(velec,rinvsq02);
1674
1675             fscal            = felec;
1676
1677             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1678
1679             /* Calculate temporary vectorial force */
1680             tx               = _mm256_mul_ps(fscal,dx02);
1681             ty               = _mm256_mul_ps(fscal,dy02);
1682             tz               = _mm256_mul_ps(fscal,dz02);
1683
1684             /* Update vectorial force */
1685             fix0             = _mm256_add_ps(fix0,tx);
1686             fiy0             = _mm256_add_ps(fiy0,ty);
1687             fiz0             = _mm256_add_ps(fiz0,tz);
1688
1689             fjx2             = _mm256_add_ps(fjx2,tx);
1690             fjy2             = _mm256_add_ps(fjy2,ty);
1691             fjz2             = _mm256_add_ps(fjz2,tz);
1692
1693             /**************************
1694              * CALCULATE INTERACTIONS *
1695              **************************/
1696
1697             /* COULOMB ELECTROSTATICS */
1698             velec            = _mm256_mul_ps(qq10,rinv10);
1699             felec            = _mm256_mul_ps(velec,rinvsq10);
1700
1701             fscal            = felec;
1702
1703             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1704
1705             /* Calculate temporary vectorial force */
1706             tx               = _mm256_mul_ps(fscal,dx10);
1707             ty               = _mm256_mul_ps(fscal,dy10);
1708             tz               = _mm256_mul_ps(fscal,dz10);
1709
1710             /* Update vectorial force */
1711             fix1             = _mm256_add_ps(fix1,tx);
1712             fiy1             = _mm256_add_ps(fiy1,ty);
1713             fiz1             = _mm256_add_ps(fiz1,tz);
1714
1715             fjx0             = _mm256_add_ps(fjx0,tx);
1716             fjy0             = _mm256_add_ps(fjy0,ty);
1717             fjz0             = _mm256_add_ps(fjz0,tz);
1718
1719             /**************************
1720              * CALCULATE INTERACTIONS *
1721              **************************/
1722
1723             /* COULOMB ELECTROSTATICS */
1724             velec            = _mm256_mul_ps(qq11,rinv11);
1725             felec            = _mm256_mul_ps(velec,rinvsq11);
1726
1727             fscal            = felec;
1728
1729             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1730
1731             /* Calculate temporary vectorial force */
1732             tx               = _mm256_mul_ps(fscal,dx11);
1733             ty               = _mm256_mul_ps(fscal,dy11);
1734             tz               = _mm256_mul_ps(fscal,dz11);
1735
1736             /* Update vectorial force */
1737             fix1             = _mm256_add_ps(fix1,tx);
1738             fiy1             = _mm256_add_ps(fiy1,ty);
1739             fiz1             = _mm256_add_ps(fiz1,tz);
1740
1741             fjx1             = _mm256_add_ps(fjx1,tx);
1742             fjy1             = _mm256_add_ps(fjy1,ty);
1743             fjz1             = _mm256_add_ps(fjz1,tz);
1744
1745             /**************************
1746              * CALCULATE INTERACTIONS *
1747              **************************/
1748
1749             /* COULOMB ELECTROSTATICS */
1750             velec            = _mm256_mul_ps(qq12,rinv12);
1751             felec            = _mm256_mul_ps(velec,rinvsq12);
1752
1753             fscal            = felec;
1754
1755             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1756
1757             /* Calculate temporary vectorial force */
1758             tx               = _mm256_mul_ps(fscal,dx12);
1759             ty               = _mm256_mul_ps(fscal,dy12);
1760             tz               = _mm256_mul_ps(fscal,dz12);
1761
1762             /* Update vectorial force */
1763             fix1             = _mm256_add_ps(fix1,tx);
1764             fiy1             = _mm256_add_ps(fiy1,ty);
1765             fiz1             = _mm256_add_ps(fiz1,tz);
1766
1767             fjx2             = _mm256_add_ps(fjx2,tx);
1768             fjy2             = _mm256_add_ps(fjy2,ty);
1769             fjz2             = _mm256_add_ps(fjz2,tz);
1770
1771             /**************************
1772              * CALCULATE INTERACTIONS *
1773              **************************/
1774
1775             /* COULOMB ELECTROSTATICS */
1776             velec            = _mm256_mul_ps(qq20,rinv20);
1777             felec            = _mm256_mul_ps(velec,rinvsq20);
1778
1779             fscal            = felec;
1780
1781             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1782
1783             /* Calculate temporary vectorial force */
1784             tx               = _mm256_mul_ps(fscal,dx20);
1785             ty               = _mm256_mul_ps(fscal,dy20);
1786             tz               = _mm256_mul_ps(fscal,dz20);
1787
1788             /* Update vectorial force */
1789             fix2             = _mm256_add_ps(fix2,tx);
1790             fiy2             = _mm256_add_ps(fiy2,ty);
1791             fiz2             = _mm256_add_ps(fiz2,tz);
1792
1793             fjx0             = _mm256_add_ps(fjx0,tx);
1794             fjy0             = _mm256_add_ps(fjy0,ty);
1795             fjz0             = _mm256_add_ps(fjz0,tz);
1796
1797             /**************************
1798              * CALCULATE INTERACTIONS *
1799              **************************/
1800
1801             /* COULOMB ELECTROSTATICS */
1802             velec            = _mm256_mul_ps(qq21,rinv21);
1803             felec            = _mm256_mul_ps(velec,rinvsq21);
1804
1805             fscal            = felec;
1806
1807             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1808
1809             /* Calculate temporary vectorial force */
1810             tx               = _mm256_mul_ps(fscal,dx21);
1811             ty               = _mm256_mul_ps(fscal,dy21);
1812             tz               = _mm256_mul_ps(fscal,dz21);
1813
1814             /* Update vectorial force */
1815             fix2             = _mm256_add_ps(fix2,tx);
1816             fiy2             = _mm256_add_ps(fiy2,ty);
1817             fiz2             = _mm256_add_ps(fiz2,tz);
1818
1819             fjx1             = _mm256_add_ps(fjx1,tx);
1820             fjy1             = _mm256_add_ps(fjy1,ty);
1821             fjz1             = _mm256_add_ps(fjz1,tz);
1822
1823             /**************************
1824              * CALCULATE INTERACTIONS *
1825              **************************/
1826
1827             /* COULOMB ELECTROSTATICS */
1828             velec            = _mm256_mul_ps(qq22,rinv22);
1829             felec            = _mm256_mul_ps(velec,rinvsq22);
1830
1831             fscal            = felec;
1832
1833             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1834
1835             /* Calculate temporary vectorial force */
1836             tx               = _mm256_mul_ps(fscal,dx22);
1837             ty               = _mm256_mul_ps(fscal,dy22);
1838             tz               = _mm256_mul_ps(fscal,dz22);
1839
1840             /* Update vectorial force */
1841             fix2             = _mm256_add_ps(fix2,tx);
1842             fiy2             = _mm256_add_ps(fiy2,ty);
1843             fiz2             = _mm256_add_ps(fiz2,tz);
1844
1845             fjx2             = _mm256_add_ps(fjx2,tx);
1846             fjy2             = _mm256_add_ps(fjy2,ty);
1847             fjz2             = _mm256_add_ps(fjz2,tz);
1848
1849             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1850             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1851             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1852             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1853             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1854             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1855             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1856             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1857
1858             gmx_mm256_decrement_3rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1859                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1860
1861             /* Inner loop uses 241 flops */
1862         }
1863
1864         /* End of innermost loop */
1865
1866         gmx_mm256_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1867                                                  f+i_coord_offset,fshift+i_shift_offset);
1868
1869         /* Increment number of inner iterations */
1870         inneriter                  += j_index_end - j_index_start;
1871
1872         /* Outer loop uses 18 flops */
1873     }
1874
1875     /* Increment number of outer iterations */
1876     outeriter        += nri;
1877
1878     /* Update outer/inner flops */
1879
1880     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*241);
1881 }