Remove all unnecessary HAVE_CONFIG_H
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_avx_256_single / nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_avx_256_single.c
1 /*
2  * This file is part of the GROMACS molecular simulation package.
3  *
4  * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6  * and including many others, as listed in the AUTHORS file in the
7  * top-level source directory and at http://www.gromacs.org.
8  *
9  * GROMACS is free software; you can redistribute it and/or
10  * modify it under the terms of the GNU Lesser General Public License
11  * as published by the Free Software Foundation; either version 2.1
12  * of the License, or (at your option) any later version.
13  *
14  * GROMACS is distributed in the hope that it will be useful,
15  * but WITHOUT ANY WARRANTY; without even the implied warranty of
16  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
17  * Lesser General Public License for more details.
18  *
19  * You should have received a copy of the GNU Lesser General Public
20  * License along with GROMACS; if not, see
21  * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22  * Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301  USA.
23  *
24  * If you want to redistribute modifications to GROMACS, please
25  * consider that scientific software is very special. Version
26  * control is crucial - bugs must be traceable. We will be happy to
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31  *
32  * To help us fund GROMACS development, we humbly ask that you cite
33  * the research papers on the package. Check out http://www.gromacs.org.
34  */
35 /*
36  * Note: this file was generated by the GROMACS avx_256_single kernel generator.
37  */
38 #include "config.h"
39
40 #include <math.h>
41
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "nrnb.h"
46
47 #include "gromacs/simd/math_x86_avx_256_single.h"
48 #include "kernelutil_x86_avx_256_single.h"
49
50 /*
51  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_VF_avx_256_single
52  * Electrostatics interaction: Coulomb
53  * VdW interaction:            CubicSplineTable
54  * Geometry:                   Water4-Water4
55  * Calculate force/pot:        PotentialAndForce
56  */
57 void
58 nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_VF_avx_256_single
59                     (t_nblist                    * gmx_restrict       nlist,
60                      rvec                        * gmx_restrict          xx,
61                      rvec                        * gmx_restrict          ff,
62                      t_forcerec                  * gmx_restrict          fr,
63                      t_mdatoms                   * gmx_restrict     mdatoms,
64                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65                      t_nrnb                      * gmx_restrict        nrnb)
66 {
67     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
68      * just 0 for non-waters.
69      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
70      * jnr indices corresponding to data put in the four positions in the SIMD register.
71      */
72     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
73     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74     int              jnrA,jnrB,jnrC,jnrD;
75     int              jnrE,jnrF,jnrG,jnrH;
76     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
77     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
78     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
79     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
80     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
81     real             rcutoff_scalar;
82     real             *shiftvec,*fshift,*x,*f;
83     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
84     real             scratch[4*DIM];
85     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86     real *           vdwioffsetptr0;
87     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
88     real *           vdwioffsetptr1;
89     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
90     real *           vdwioffsetptr2;
91     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
92     real *           vdwioffsetptr3;
93     __m256           ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
94     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
95     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
96     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
97     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
98     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
99     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
100     int              vdwjidx3A,vdwjidx3B,vdwjidx3C,vdwjidx3D,vdwjidx3E,vdwjidx3F,vdwjidx3G,vdwjidx3H;
101     __m256           jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
102     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
103     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
104     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
105     __m256           dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
106     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
107     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
108     __m256           dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
109     __m256           dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
110     __m256           dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
111     __m256           dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
112     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
113     real             *charge;
114     int              nvdwtype;
115     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
116     int              *vdwtype;
117     real             *vdwparam;
118     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
119     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
120     __m256i          vfitab;
121     __m128i          vfitab_lo,vfitab_hi;
122     __m128i          ifour       = _mm_set1_epi32(4);
123     __m256           rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
124     real             *vftab;
125     __m256           dummy_mask,cutoff_mask;
126     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
127     __m256           one     = _mm256_set1_ps(1.0);
128     __m256           two     = _mm256_set1_ps(2.0);
129     x                = xx[0];
130     f                = ff[0];
131
132     nri              = nlist->nri;
133     iinr             = nlist->iinr;
134     jindex           = nlist->jindex;
135     jjnr             = nlist->jjnr;
136     shiftidx         = nlist->shift;
137     gid              = nlist->gid;
138     shiftvec         = fr->shift_vec[0];
139     fshift           = fr->fshift[0];
140     facel            = _mm256_set1_ps(fr->epsfac);
141     charge           = mdatoms->chargeA;
142     nvdwtype         = fr->ntype;
143     vdwparam         = fr->nbfp;
144     vdwtype          = mdatoms->typeA;
145
146     vftab            = kernel_data->table_vdw->data;
147     vftabscale       = _mm256_set1_ps(kernel_data->table_vdw->scale);
148
149     /* Setup water-specific parameters */
150     inr              = nlist->iinr[0];
151     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
152     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
153     iq3              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+3]));
154     vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
155
156     jq1              = _mm256_set1_ps(charge[inr+1]);
157     jq2              = _mm256_set1_ps(charge[inr+2]);
158     jq3              = _mm256_set1_ps(charge[inr+3]);
159     vdwjidx0A        = 2*vdwtype[inr+0];
160     c6_00            = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
161     c12_00           = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
162     qq11             = _mm256_mul_ps(iq1,jq1);
163     qq12             = _mm256_mul_ps(iq1,jq2);
164     qq13             = _mm256_mul_ps(iq1,jq3);
165     qq21             = _mm256_mul_ps(iq2,jq1);
166     qq22             = _mm256_mul_ps(iq2,jq2);
167     qq23             = _mm256_mul_ps(iq2,jq3);
168     qq31             = _mm256_mul_ps(iq3,jq1);
169     qq32             = _mm256_mul_ps(iq3,jq2);
170     qq33             = _mm256_mul_ps(iq3,jq3);
171
172     /* Avoid stupid compiler warnings */
173     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
174     j_coord_offsetA = 0;
175     j_coord_offsetB = 0;
176     j_coord_offsetC = 0;
177     j_coord_offsetD = 0;
178     j_coord_offsetE = 0;
179     j_coord_offsetF = 0;
180     j_coord_offsetG = 0;
181     j_coord_offsetH = 0;
182
183     outeriter        = 0;
184     inneriter        = 0;
185
186     for(iidx=0;iidx<4*DIM;iidx++)
187     {
188         scratch[iidx] = 0.0;
189     }
190
191     /* Start outer loop over neighborlists */
192     for(iidx=0; iidx<nri; iidx++)
193     {
194         /* Load shift vector for this list */
195         i_shift_offset   = DIM*shiftidx[iidx];
196
197         /* Load limits for loop over neighbors */
198         j_index_start    = jindex[iidx];
199         j_index_end      = jindex[iidx+1];
200
201         /* Get outer coordinate index */
202         inr              = iinr[iidx];
203         i_coord_offset   = DIM*inr;
204
205         /* Load i particle coords and add shift vector */
206         gmx_mm256_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
207                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
208
209         fix0             = _mm256_setzero_ps();
210         fiy0             = _mm256_setzero_ps();
211         fiz0             = _mm256_setzero_ps();
212         fix1             = _mm256_setzero_ps();
213         fiy1             = _mm256_setzero_ps();
214         fiz1             = _mm256_setzero_ps();
215         fix2             = _mm256_setzero_ps();
216         fiy2             = _mm256_setzero_ps();
217         fiz2             = _mm256_setzero_ps();
218         fix3             = _mm256_setzero_ps();
219         fiy3             = _mm256_setzero_ps();
220         fiz3             = _mm256_setzero_ps();
221
222         /* Reset potential sums */
223         velecsum         = _mm256_setzero_ps();
224         vvdwsum          = _mm256_setzero_ps();
225
226         /* Start inner kernel loop */
227         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
228         {
229
230             /* Get j neighbor index, and coordinate index */
231             jnrA             = jjnr[jidx];
232             jnrB             = jjnr[jidx+1];
233             jnrC             = jjnr[jidx+2];
234             jnrD             = jjnr[jidx+3];
235             jnrE             = jjnr[jidx+4];
236             jnrF             = jjnr[jidx+5];
237             jnrG             = jjnr[jidx+6];
238             jnrH             = jjnr[jidx+7];
239             j_coord_offsetA  = DIM*jnrA;
240             j_coord_offsetB  = DIM*jnrB;
241             j_coord_offsetC  = DIM*jnrC;
242             j_coord_offsetD  = DIM*jnrD;
243             j_coord_offsetE  = DIM*jnrE;
244             j_coord_offsetF  = DIM*jnrF;
245             j_coord_offsetG  = DIM*jnrG;
246             j_coord_offsetH  = DIM*jnrH;
247
248             /* load j atom coordinates */
249             gmx_mm256_load_4rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
250                                                  x+j_coord_offsetC,x+j_coord_offsetD,
251                                                  x+j_coord_offsetE,x+j_coord_offsetF,
252                                                  x+j_coord_offsetG,x+j_coord_offsetH,
253                                                  &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
254                                                  &jy2,&jz2,&jx3,&jy3,&jz3);
255
256             /* Calculate displacement vector */
257             dx00             = _mm256_sub_ps(ix0,jx0);
258             dy00             = _mm256_sub_ps(iy0,jy0);
259             dz00             = _mm256_sub_ps(iz0,jz0);
260             dx11             = _mm256_sub_ps(ix1,jx1);
261             dy11             = _mm256_sub_ps(iy1,jy1);
262             dz11             = _mm256_sub_ps(iz1,jz1);
263             dx12             = _mm256_sub_ps(ix1,jx2);
264             dy12             = _mm256_sub_ps(iy1,jy2);
265             dz12             = _mm256_sub_ps(iz1,jz2);
266             dx13             = _mm256_sub_ps(ix1,jx3);
267             dy13             = _mm256_sub_ps(iy1,jy3);
268             dz13             = _mm256_sub_ps(iz1,jz3);
269             dx21             = _mm256_sub_ps(ix2,jx1);
270             dy21             = _mm256_sub_ps(iy2,jy1);
271             dz21             = _mm256_sub_ps(iz2,jz1);
272             dx22             = _mm256_sub_ps(ix2,jx2);
273             dy22             = _mm256_sub_ps(iy2,jy2);
274             dz22             = _mm256_sub_ps(iz2,jz2);
275             dx23             = _mm256_sub_ps(ix2,jx3);
276             dy23             = _mm256_sub_ps(iy2,jy3);
277             dz23             = _mm256_sub_ps(iz2,jz3);
278             dx31             = _mm256_sub_ps(ix3,jx1);
279             dy31             = _mm256_sub_ps(iy3,jy1);
280             dz31             = _mm256_sub_ps(iz3,jz1);
281             dx32             = _mm256_sub_ps(ix3,jx2);
282             dy32             = _mm256_sub_ps(iy3,jy2);
283             dz32             = _mm256_sub_ps(iz3,jz2);
284             dx33             = _mm256_sub_ps(ix3,jx3);
285             dy33             = _mm256_sub_ps(iy3,jy3);
286             dz33             = _mm256_sub_ps(iz3,jz3);
287
288             /* Calculate squared distance and things based on it */
289             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
290             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
291             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
292             rsq13            = gmx_mm256_calc_rsq_ps(dx13,dy13,dz13);
293             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
294             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
295             rsq23            = gmx_mm256_calc_rsq_ps(dx23,dy23,dz23);
296             rsq31            = gmx_mm256_calc_rsq_ps(dx31,dy31,dz31);
297             rsq32            = gmx_mm256_calc_rsq_ps(dx32,dy32,dz32);
298             rsq33            = gmx_mm256_calc_rsq_ps(dx33,dy33,dz33);
299
300             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
301             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
302             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
303             rinv13           = gmx_mm256_invsqrt_ps(rsq13);
304             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
305             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
306             rinv23           = gmx_mm256_invsqrt_ps(rsq23);
307             rinv31           = gmx_mm256_invsqrt_ps(rsq31);
308             rinv32           = gmx_mm256_invsqrt_ps(rsq32);
309             rinv33           = gmx_mm256_invsqrt_ps(rsq33);
310
311             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
312             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
313             rinvsq13         = _mm256_mul_ps(rinv13,rinv13);
314             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
315             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
316             rinvsq23         = _mm256_mul_ps(rinv23,rinv23);
317             rinvsq31         = _mm256_mul_ps(rinv31,rinv31);
318             rinvsq32         = _mm256_mul_ps(rinv32,rinv32);
319             rinvsq33         = _mm256_mul_ps(rinv33,rinv33);
320
321             fjx0             = _mm256_setzero_ps();
322             fjy0             = _mm256_setzero_ps();
323             fjz0             = _mm256_setzero_ps();
324             fjx1             = _mm256_setzero_ps();
325             fjy1             = _mm256_setzero_ps();
326             fjz1             = _mm256_setzero_ps();
327             fjx2             = _mm256_setzero_ps();
328             fjy2             = _mm256_setzero_ps();
329             fjz2             = _mm256_setzero_ps();
330             fjx3             = _mm256_setzero_ps();
331             fjy3             = _mm256_setzero_ps();
332             fjz3             = _mm256_setzero_ps();
333
334             /**************************
335              * CALCULATE INTERACTIONS *
336              **************************/
337
338             r00              = _mm256_mul_ps(rsq00,rinv00);
339
340             /* Calculate table index by multiplying r with table scale and truncate to integer */
341             rt               = _mm256_mul_ps(r00,vftabscale);
342             vfitab           = _mm256_cvttps_epi32(rt);
343             vfeps            = _mm256_sub_ps(rt,_mm256_round_ps(rt, _MM_FROUND_FLOOR));
344             /*         AVX1 does not support 256-bit integer operations, so now we go to 128-bit mode... */
345             vfitab_lo        = _mm256_extractf128_si256(vfitab,0x0);
346             vfitab_hi        = _mm256_extractf128_si256(vfitab,0x1);
347             vfitab_lo        = _mm_slli_epi32(vfitab_lo,3);
348             vfitab_hi        = _mm_slli_epi32(vfitab_hi,3);
349
350             /* CUBIC SPLINE TABLE DISPERSION */
351             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
352                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
353             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
354                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
355             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
356                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
357             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
358                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
359             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
360             Heps             = _mm256_mul_ps(vfeps,H);
361             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
362             VV               = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
363             vvdw6            = _mm256_mul_ps(c6_00,VV);
364             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
365             fvdw6            = _mm256_mul_ps(c6_00,FF);
366
367             /* CUBIC SPLINE TABLE REPULSION */
368             vfitab_lo        = _mm_add_epi32(vfitab_lo,ifour);
369             vfitab_hi        = _mm_add_epi32(vfitab_hi,ifour);
370             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
371                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
372             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
373                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
374             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
375                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
376             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
377                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
378             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
379             Heps             = _mm256_mul_ps(vfeps,H);
380             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
381             VV               = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
382             vvdw12           = _mm256_mul_ps(c12_00,VV);
383             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
384             fvdw12           = _mm256_mul_ps(c12_00,FF);
385             vvdw             = _mm256_add_ps(vvdw12,vvdw6);
386             fvdw             = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_add_ps(fvdw6,fvdw12),_mm256_mul_ps(vftabscale,rinv00)));
387
388             /* Update potential sum for this i atom from the interaction with this j atom. */
389             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
390
391             fscal            = fvdw;
392
393             /* Calculate temporary vectorial force */
394             tx               = _mm256_mul_ps(fscal,dx00);
395             ty               = _mm256_mul_ps(fscal,dy00);
396             tz               = _mm256_mul_ps(fscal,dz00);
397
398             /* Update vectorial force */
399             fix0             = _mm256_add_ps(fix0,tx);
400             fiy0             = _mm256_add_ps(fiy0,ty);
401             fiz0             = _mm256_add_ps(fiz0,tz);
402
403             fjx0             = _mm256_add_ps(fjx0,tx);
404             fjy0             = _mm256_add_ps(fjy0,ty);
405             fjz0             = _mm256_add_ps(fjz0,tz);
406
407             /**************************
408              * CALCULATE INTERACTIONS *
409              **************************/
410
411             /* COULOMB ELECTROSTATICS */
412             velec            = _mm256_mul_ps(qq11,rinv11);
413             felec            = _mm256_mul_ps(velec,rinvsq11);
414
415             /* Update potential sum for this i atom from the interaction with this j atom. */
416             velecsum         = _mm256_add_ps(velecsum,velec);
417
418             fscal            = felec;
419
420             /* Calculate temporary vectorial force */
421             tx               = _mm256_mul_ps(fscal,dx11);
422             ty               = _mm256_mul_ps(fscal,dy11);
423             tz               = _mm256_mul_ps(fscal,dz11);
424
425             /* Update vectorial force */
426             fix1             = _mm256_add_ps(fix1,tx);
427             fiy1             = _mm256_add_ps(fiy1,ty);
428             fiz1             = _mm256_add_ps(fiz1,tz);
429
430             fjx1             = _mm256_add_ps(fjx1,tx);
431             fjy1             = _mm256_add_ps(fjy1,ty);
432             fjz1             = _mm256_add_ps(fjz1,tz);
433
434             /**************************
435              * CALCULATE INTERACTIONS *
436              **************************/
437
438             /* COULOMB ELECTROSTATICS */
439             velec            = _mm256_mul_ps(qq12,rinv12);
440             felec            = _mm256_mul_ps(velec,rinvsq12);
441
442             /* Update potential sum for this i atom from the interaction with this j atom. */
443             velecsum         = _mm256_add_ps(velecsum,velec);
444
445             fscal            = felec;
446
447             /* Calculate temporary vectorial force */
448             tx               = _mm256_mul_ps(fscal,dx12);
449             ty               = _mm256_mul_ps(fscal,dy12);
450             tz               = _mm256_mul_ps(fscal,dz12);
451
452             /* Update vectorial force */
453             fix1             = _mm256_add_ps(fix1,tx);
454             fiy1             = _mm256_add_ps(fiy1,ty);
455             fiz1             = _mm256_add_ps(fiz1,tz);
456
457             fjx2             = _mm256_add_ps(fjx2,tx);
458             fjy2             = _mm256_add_ps(fjy2,ty);
459             fjz2             = _mm256_add_ps(fjz2,tz);
460
461             /**************************
462              * CALCULATE INTERACTIONS *
463              **************************/
464
465             /* COULOMB ELECTROSTATICS */
466             velec            = _mm256_mul_ps(qq13,rinv13);
467             felec            = _mm256_mul_ps(velec,rinvsq13);
468
469             /* Update potential sum for this i atom from the interaction with this j atom. */
470             velecsum         = _mm256_add_ps(velecsum,velec);
471
472             fscal            = felec;
473
474             /* Calculate temporary vectorial force */
475             tx               = _mm256_mul_ps(fscal,dx13);
476             ty               = _mm256_mul_ps(fscal,dy13);
477             tz               = _mm256_mul_ps(fscal,dz13);
478
479             /* Update vectorial force */
480             fix1             = _mm256_add_ps(fix1,tx);
481             fiy1             = _mm256_add_ps(fiy1,ty);
482             fiz1             = _mm256_add_ps(fiz1,tz);
483
484             fjx3             = _mm256_add_ps(fjx3,tx);
485             fjy3             = _mm256_add_ps(fjy3,ty);
486             fjz3             = _mm256_add_ps(fjz3,tz);
487
488             /**************************
489              * CALCULATE INTERACTIONS *
490              **************************/
491
492             /* COULOMB ELECTROSTATICS */
493             velec            = _mm256_mul_ps(qq21,rinv21);
494             felec            = _mm256_mul_ps(velec,rinvsq21);
495
496             /* Update potential sum for this i atom from the interaction with this j atom. */
497             velecsum         = _mm256_add_ps(velecsum,velec);
498
499             fscal            = felec;
500
501             /* Calculate temporary vectorial force */
502             tx               = _mm256_mul_ps(fscal,dx21);
503             ty               = _mm256_mul_ps(fscal,dy21);
504             tz               = _mm256_mul_ps(fscal,dz21);
505
506             /* Update vectorial force */
507             fix2             = _mm256_add_ps(fix2,tx);
508             fiy2             = _mm256_add_ps(fiy2,ty);
509             fiz2             = _mm256_add_ps(fiz2,tz);
510
511             fjx1             = _mm256_add_ps(fjx1,tx);
512             fjy1             = _mm256_add_ps(fjy1,ty);
513             fjz1             = _mm256_add_ps(fjz1,tz);
514
515             /**************************
516              * CALCULATE INTERACTIONS *
517              **************************/
518
519             /* COULOMB ELECTROSTATICS */
520             velec            = _mm256_mul_ps(qq22,rinv22);
521             felec            = _mm256_mul_ps(velec,rinvsq22);
522
523             /* Update potential sum for this i atom from the interaction with this j atom. */
524             velecsum         = _mm256_add_ps(velecsum,velec);
525
526             fscal            = felec;
527
528             /* Calculate temporary vectorial force */
529             tx               = _mm256_mul_ps(fscal,dx22);
530             ty               = _mm256_mul_ps(fscal,dy22);
531             tz               = _mm256_mul_ps(fscal,dz22);
532
533             /* Update vectorial force */
534             fix2             = _mm256_add_ps(fix2,tx);
535             fiy2             = _mm256_add_ps(fiy2,ty);
536             fiz2             = _mm256_add_ps(fiz2,tz);
537
538             fjx2             = _mm256_add_ps(fjx2,tx);
539             fjy2             = _mm256_add_ps(fjy2,ty);
540             fjz2             = _mm256_add_ps(fjz2,tz);
541
542             /**************************
543              * CALCULATE INTERACTIONS *
544              **************************/
545
546             /* COULOMB ELECTROSTATICS */
547             velec            = _mm256_mul_ps(qq23,rinv23);
548             felec            = _mm256_mul_ps(velec,rinvsq23);
549
550             /* Update potential sum for this i atom from the interaction with this j atom. */
551             velecsum         = _mm256_add_ps(velecsum,velec);
552
553             fscal            = felec;
554
555             /* Calculate temporary vectorial force */
556             tx               = _mm256_mul_ps(fscal,dx23);
557             ty               = _mm256_mul_ps(fscal,dy23);
558             tz               = _mm256_mul_ps(fscal,dz23);
559
560             /* Update vectorial force */
561             fix2             = _mm256_add_ps(fix2,tx);
562             fiy2             = _mm256_add_ps(fiy2,ty);
563             fiz2             = _mm256_add_ps(fiz2,tz);
564
565             fjx3             = _mm256_add_ps(fjx3,tx);
566             fjy3             = _mm256_add_ps(fjy3,ty);
567             fjz3             = _mm256_add_ps(fjz3,tz);
568
569             /**************************
570              * CALCULATE INTERACTIONS *
571              **************************/
572
573             /* COULOMB ELECTROSTATICS */
574             velec            = _mm256_mul_ps(qq31,rinv31);
575             felec            = _mm256_mul_ps(velec,rinvsq31);
576
577             /* Update potential sum for this i atom from the interaction with this j atom. */
578             velecsum         = _mm256_add_ps(velecsum,velec);
579
580             fscal            = felec;
581
582             /* Calculate temporary vectorial force */
583             tx               = _mm256_mul_ps(fscal,dx31);
584             ty               = _mm256_mul_ps(fscal,dy31);
585             tz               = _mm256_mul_ps(fscal,dz31);
586
587             /* Update vectorial force */
588             fix3             = _mm256_add_ps(fix3,tx);
589             fiy3             = _mm256_add_ps(fiy3,ty);
590             fiz3             = _mm256_add_ps(fiz3,tz);
591
592             fjx1             = _mm256_add_ps(fjx1,tx);
593             fjy1             = _mm256_add_ps(fjy1,ty);
594             fjz1             = _mm256_add_ps(fjz1,tz);
595
596             /**************************
597              * CALCULATE INTERACTIONS *
598              **************************/
599
600             /* COULOMB ELECTROSTATICS */
601             velec            = _mm256_mul_ps(qq32,rinv32);
602             felec            = _mm256_mul_ps(velec,rinvsq32);
603
604             /* Update potential sum for this i atom from the interaction with this j atom. */
605             velecsum         = _mm256_add_ps(velecsum,velec);
606
607             fscal            = felec;
608
609             /* Calculate temporary vectorial force */
610             tx               = _mm256_mul_ps(fscal,dx32);
611             ty               = _mm256_mul_ps(fscal,dy32);
612             tz               = _mm256_mul_ps(fscal,dz32);
613
614             /* Update vectorial force */
615             fix3             = _mm256_add_ps(fix3,tx);
616             fiy3             = _mm256_add_ps(fiy3,ty);
617             fiz3             = _mm256_add_ps(fiz3,tz);
618
619             fjx2             = _mm256_add_ps(fjx2,tx);
620             fjy2             = _mm256_add_ps(fjy2,ty);
621             fjz2             = _mm256_add_ps(fjz2,tz);
622
623             /**************************
624              * CALCULATE INTERACTIONS *
625              **************************/
626
627             /* COULOMB ELECTROSTATICS */
628             velec            = _mm256_mul_ps(qq33,rinv33);
629             felec            = _mm256_mul_ps(velec,rinvsq33);
630
631             /* Update potential sum for this i atom from the interaction with this j atom. */
632             velecsum         = _mm256_add_ps(velecsum,velec);
633
634             fscal            = felec;
635
636             /* Calculate temporary vectorial force */
637             tx               = _mm256_mul_ps(fscal,dx33);
638             ty               = _mm256_mul_ps(fscal,dy33);
639             tz               = _mm256_mul_ps(fscal,dz33);
640
641             /* Update vectorial force */
642             fix3             = _mm256_add_ps(fix3,tx);
643             fiy3             = _mm256_add_ps(fiy3,ty);
644             fiz3             = _mm256_add_ps(fiz3,tz);
645
646             fjx3             = _mm256_add_ps(fjx3,tx);
647             fjy3             = _mm256_add_ps(fjy3,ty);
648             fjz3             = _mm256_add_ps(fjz3,tz);
649
650             fjptrA             = f+j_coord_offsetA;
651             fjptrB             = f+j_coord_offsetB;
652             fjptrC             = f+j_coord_offsetC;
653             fjptrD             = f+j_coord_offsetD;
654             fjptrE             = f+j_coord_offsetE;
655             fjptrF             = f+j_coord_offsetF;
656             fjptrG             = f+j_coord_offsetG;
657             fjptrH             = f+j_coord_offsetH;
658
659             gmx_mm256_decrement_4rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
660                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
661                                                       fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
662
663             /* Inner loop uses 302 flops */
664         }
665
666         if(jidx<j_index_end)
667         {
668
669             /* Get j neighbor index, and coordinate index */
670             jnrlistA         = jjnr[jidx];
671             jnrlistB         = jjnr[jidx+1];
672             jnrlistC         = jjnr[jidx+2];
673             jnrlistD         = jjnr[jidx+3];
674             jnrlistE         = jjnr[jidx+4];
675             jnrlistF         = jjnr[jidx+5];
676             jnrlistG         = jjnr[jidx+6];
677             jnrlistH         = jjnr[jidx+7];
678             /* Sign of each element will be negative for non-real atoms.
679              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
680              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
681              */
682             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
683                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
684                                             
685             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
686             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
687             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
688             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
689             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
690             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
691             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
692             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
693             j_coord_offsetA  = DIM*jnrA;
694             j_coord_offsetB  = DIM*jnrB;
695             j_coord_offsetC  = DIM*jnrC;
696             j_coord_offsetD  = DIM*jnrD;
697             j_coord_offsetE  = DIM*jnrE;
698             j_coord_offsetF  = DIM*jnrF;
699             j_coord_offsetG  = DIM*jnrG;
700             j_coord_offsetH  = DIM*jnrH;
701
702             /* load j atom coordinates */
703             gmx_mm256_load_4rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
704                                                  x+j_coord_offsetC,x+j_coord_offsetD,
705                                                  x+j_coord_offsetE,x+j_coord_offsetF,
706                                                  x+j_coord_offsetG,x+j_coord_offsetH,
707                                                  &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
708                                                  &jy2,&jz2,&jx3,&jy3,&jz3);
709
710             /* Calculate displacement vector */
711             dx00             = _mm256_sub_ps(ix0,jx0);
712             dy00             = _mm256_sub_ps(iy0,jy0);
713             dz00             = _mm256_sub_ps(iz0,jz0);
714             dx11             = _mm256_sub_ps(ix1,jx1);
715             dy11             = _mm256_sub_ps(iy1,jy1);
716             dz11             = _mm256_sub_ps(iz1,jz1);
717             dx12             = _mm256_sub_ps(ix1,jx2);
718             dy12             = _mm256_sub_ps(iy1,jy2);
719             dz12             = _mm256_sub_ps(iz1,jz2);
720             dx13             = _mm256_sub_ps(ix1,jx3);
721             dy13             = _mm256_sub_ps(iy1,jy3);
722             dz13             = _mm256_sub_ps(iz1,jz3);
723             dx21             = _mm256_sub_ps(ix2,jx1);
724             dy21             = _mm256_sub_ps(iy2,jy1);
725             dz21             = _mm256_sub_ps(iz2,jz1);
726             dx22             = _mm256_sub_ps(ix2,jx2);
727             dy22             = _mm256_sub_ps(iy2,jy2);
728             dz22             = _mm256_sub_ps(iz2,jz2);
729             dx23             = _mm256_sub_ps(ix2,jx3);
730             dy23             = _mm256_sub_ps(iy2,jy3);
731             dz23             = _mm256_sub_ps(iz2,jz3);
732             dx31             = _mm256_sub_ps(ix3,jx1);
733             dy31             = _mm256_sub_ps(iy3,jy1);
734             dz31             = _mm256_sub_ps(iz3,jz1);
735             dx32             = _mm256_sub_ps(ix3,jx2);
736             dy32             = _mm256_sub_ps(iy3,jy2);
737             dz32             = _mm256_sub_ps(iz3,jz2);
738             dx33             = _mm256_sub_ps(ix3,jx3);
739             dy33             = _mm256_sub_ps(iy3,jy3);
740             dz33             = _mm256_sub_ps(iz3,jz3);
741
742             /* Calculate squared distance and things based on it */
743             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
744             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
745             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
746             rsq13            = gmx_mm256_calc_rsq_ps(dx13,dy13,dz13);
747             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
748             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
749             rsq23            = gmx_mm256_calc_rsq_ps(dx23,dy23,dz23);
750             rsq31            = gmx_mm256_calc_rsq_ps(dx31,dy31,dz31);
751             rsq32            = gmx_mm256_calc_rsq_ps(dx32,dy32,dz32);
752             rsq33            = gmx_mm256_calc_rsq_ps(dx33,dy33,dz33);
753
754             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
755             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
756             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
757             rinv13           = gmx_mm256_invsqrt_ps(rsq13);
758             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
759             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
760             rinv23           = gmx_mm256_invsqrt_ps(rsq23);
761             rinv31           = gmx_mm256_invsqrt_ps(rsq31);
762             rinv32           = gmx_mm256_invsqrt_ps(rsq32);
763             rinv33           = gmx_mm256_invsqrt_ps(rsq33);
764
765             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
766             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
767             rinvsq13         = _mm256_mul_ps(rinv13,rinv13);
768             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
769             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
770             rinvsq23         = _mm256_mul_ps(rinv23,rinv23);
771             rinvsq31         = _mm256_mul_ps(rinv31,rinv31);
772             rinvsq32         = _mm256_mul_ps(rinv32,rinv32);
773             rinvsq33         = _mm256_mul_ps(rinv33,rinv33);
774
775             fjx0             = _mm256_setzero_ps();
776             fjy0             = _mm256_setzero_ps();
777             fjz0             = _mm256_setzero_ps();
778             fjx1             = _mm256_setzero_ps();
779             fjy1             = _mm256_setzero_ps();
780             fjz1             = _mm256_setzero_ps();
781             fjx2             = _mm256_setzero_ps();
782             fjy2             = _mm256_setzero_ps();
783             fjz2             = _mm256_setzero_ps();
784             fjx3             = _mm256_setzero_ps();
785             fjy3             = _mm256_setzero_ps();
786             fjz3             = _mm256_setzero_ps();
787
788             /**************************
789              * CALCULATE INTERACTIONS *
790              **************************/
791
792             r00              = _mm256_mul_ps(rsq00,rinv00);
793             r00              = _mm256_andnot_ps(dummy_mask,r00);
794
795             /* Calculate table index by multiplying r with table scale and truncate to integer */
796             rt               = _mm256_mul_ps(r00,vftabscale);
797             vfitab           = _mm256_cvttps_epi32(rt);
798             vfeps            = _mm256_sub_ps(rt,_mm256_round_ps(rt, _MM_FROUND_FLOOR));
799             /*         AVX1 does not support 256-bit integer operations, so now we go to 128-bit mode... */
800             vfitab_lo        = _mm256_extractf128_si256(vfitab,0x0);
801             vfitab_hi        = _mm256_extractf128_si256(vfitab,0x1);
802             vfitab_lo        = _mm_slli_epi32(vfitab_lo,3);
803             vfitab_hi        = _mm_slli_epi32(vfitab_hi,3);
804
805             /* CUBIC SPLINE TABLE DISPERSION */
806             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
807                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
808             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
809                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
810             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
811                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
812             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
813                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
814             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
815             Heps             = _mm256_mul_ps(vfeps,H);
816             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
817             VV               = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
818             vvdw6            = _mm256_mul_ps(c6_00,VV);
819             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
820             fvdw6            = _mm256_mul_ps(c6_00,FF);
821
822             /* CUBIC SPLINE TABLE REPULSION */
823             vfitab_lo        = _mm_add_epi32(vfitab_lo,ifour);
824             vfitab_hi        = _mm_add_epi32(vfitab_hi,ifour);
825             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
826                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
827             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
828                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
829             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
830                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
831             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
832                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
833             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
834             Heps             = _mm256_mul_ps(vfeps,H);
835             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
836             VV               = _mm256_add_ps(Y,_mm256_mul_ps(vfeps,Fp));
837             vvdw12           = _mm256_mul_ps(c12_00,VV);
838             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
839             fvdw12           = _mm256_mul_ps(c12_00,FF);
840             vvdw             = _mm256_add_ps(vvdw12,vvdw6);
841             fvdw             = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_add_ps(fvdw6,fvdw12),_mm256_mul_ps(vftabscale,rinv00)));
842
843             /* Update potential sum for this i atom from the interaction with this j atom. */
844             vvdw             = _mm256_andnot_ps(dummy_mask,vvdw);
845             vvdwsum          = _mm256_add_ps(vvdwsum,vvdw);
846
847             fscal            = fvdw;
848
849             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
850
851             /* Calculate temporary vectorial force */
852             tx               = _mm256_mul_ps(fscal,dx00);
853             ty               = _mm256_mul_ps(fscal,dy00);
854             tz               = _mm256_mul_ps(fscal,dz00);
855
856             /* Update vectorial force */
857             fix0             = _mm256_add_ps(fix0,tx);
858             fiy0             = _mm256_add_ps(fiy0,ty);
859             fiz0             = _mm256_add_ps(fiz0,tz);
860
861             fjx0             = _mm256_add_ps(fjx0,tx);
862             fjy0             = _mm256_add_ps(fjy0,ty);
863             fjz0             = _mm256_add_ps(fjz0,tz);
864
865             /**************************
866              * CALCULATE INTERACTIONS *
867              **************************/
868
869             /* COULOMB ELECTROSTATICS */
870             velec            = _mm256_mul_ps(qq11,rinv11);
871             felec            = _mm256_mul_ps(velec,rinvsq11);
872
873             /* Update potential sum for this i atom from the interaction with this j atom. */
874             velec            = _mm256_andnot_ps(dummy_mask,velec);
875             velecsum         = _mm256_add_ps(velecsum,velec);
876
877             fscal            = felec;
878
879             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
880
881             /* Calculate temporary vectorial force */
882             tx               = _mm256_mul_ps(fscal,dx11);
883             ty               = _mm256_mul_ps(fscal,dy11);
884             tz               = _mm256_mul_ps(fscal,dz11);
885
886             /* Update vectorial force */
887             fix1             = _mm256_add_ps(fix1,tx);
888             fiy1             = _mm256_add_ps(fiy1,ty);
889             fiz1             = _mm256_add_ps(fiz1,tz);
890
891             fjx1             = _mm256_add_ps(fjx1,tx);
892             fjy1             = _mm256_add_ps(fjy1,ty);
893             fjz1             = _mm256_add_ps(fjz1,tz);
894
895             /**************************
896              * CALCULATE INTERACTIONS *
897              **************************/
898
899             /* COULOMB ELECTROSTATICS */
900             velec            = _mm256_mul_ps(qq12,rinv12);
901             felec            = _mm256_mul_ps(velec,rinvsq12);
902
903             /* Update potential sum for this i atom from the interaction with this j atom. */
904             velec            = _mm256_andnot_ps(dummy_mask,velec);
905             velecsum         = _mm256_add_ps(velecsum,velec);
906
907             fscal            = felec;
908
909             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
910
911             /* Calculate temporary vectorial force */
912             tx               = _mm256_mul_ps(fscal,dx12);
913             ty               = _mm256_mul_ps(fscal,dy12);
914             tz               = _mm256_mul_ps(fscal,dz12);
915
916             /* Update vectorial force */
917             fix1             = _mm256_add_ps(fix1,tx);
918             fiy1             = _mm256_add_ps(fiy1,ty);
919             fiz1             = _mm256_add_ps(fiz1,tz);
920
921             fjx2             = _mm256_add_ps(fjx2,tx);
922             fjy2             = _mm256_add_ps(fjy2,ty);
923             fjz2             = _mm256_add_ps(fjz2,tz);
924
925             /**************************
926              * CALCULATE INTERACTIONS *
927              **************************/
928
929             /* COULOMB ELECTROSTATICS */
930             velec            = _mm256_mul_ps(qq13,rinv13);
931             felec            = _mm256_mul_ps(velec,rinvsq13);
932
933             /* Update potential sum for this i atom from the interaction with this j atom. */
934             velec            = _mm256_andnot_ps(dummy_mask,velec);
935             velecsum         = _mm256_add_ps(velecsum,velec);
936
937             fscal            = felec;
938
939             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
940
941             /* Calculate temporary vectorial force */
942             tx               = _mm256_mul_ps(fscal,dx13);
943             ty               = _mm256_mul_ps(fscal,dy13);
944             tz               = _mm256_mul_ps(fscal,dz13);
945
946             /* Update vectorial force */
947             fix1             = _mm256_add_ps(fix1,tx);
948             fiy1             = _mm256_add_ps(fiy1,ty);
949             fiz1             = _mm256_add_ps(fiz1,tz);
950
951             fjx3             = _mm256_add_ps(fjx3,tx);
952             fjy3             = _mm256_add_ps(fjy3,ty);
953             fjz3             = _mm256_add_ps(fjz3,tz);
954
955             /**************************
956              * CALCULATE INTERACTIONS *
957              **************************/
958
959             /* COULOMB ELECTROSTATICS */
960             velec            = _mm256_mul_ps(qq21,rinv21);
961             felec            = _mm256_mul_ps(velec,rinvsq21);
962
963             /* Update potential sum for this i atom from the interaction with this j atom. */
964             velec            = _mm256_andnot_ps(dummy_mask,velec);
965             velecsum         = _mm256_add_ps(velecsum,velec);
966
967             fscal            = felec;
968
969             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
970
971             /* Calculate temporary vectorial force */
972             tx               = _mm256_mul_ps(fscal,dx21);
973             ty               = _mm256_mul_ps(fscal,dy21);
974             tz               = _mm256_mul_ps(fscal,dz21);
975
976             /* Update vectorial force */
977             fix2             = _mm256_add_ps(fix2,tx);
978             fiy2             = _mm256_add_ps(fiy2,ty);
979             fiz2             = _mm256_add_ps(fiz2,tz);
980
981             fjx1             = _mm256_add_ps(fjx1,tx);
982             fjy1             = _mm256_add_ps(fjy1,ty);
983             fjz1             = _mm256_add_ps(fjz1,tz);
984
985             /**************************
986              * CALCULATE INTERACTIONS *
987              **************************/
988
989             /* COULOMB ELECTROSTATICS */
990             velec            = _mm256_mul_ps(qq22,rinv22);
991             felec            = _mm256_mul_ps(velec,rinvsq22);
992
993             /* Update potential sum for this i atom from the interaction with this j atom. */
994             velec            = _mm256_andnot_ps(dummy_mask,velec);
995             velecsum         = _mm256_add_ps(velecsum,velec);
996
997             fscal            = felec;
998
999             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1000
1001             /* Calculate temporary vectorial force */
1002             tx               = _mm256_mul_ps(fscal,dx22);
1003             ty               = _mm256_mul_ps(fscal,dy22);
1004             tz               = _mm256_mul_ps(fscal,dz22);
1005
1006             /* Update vectorial force */
1007             fix2             = _mm256_add_ps(fix2,tx);
1008             fiy2             = _mm256_add_ps(fiy2,ty);
1009             fiz2             = _mm256_add_ps(fiz2,tz);
1010
1011             fjx2             = _mm256_add_ps(fjx2,tx);
1012             fjy2             = _mm256_add_ps(fjy2,ty);
1013             fjz2             = _mm256_add_ps(fjz2,tz);
1014
1015             /**************************
1016              * CALCULATE INTERACTIONS *
1017              **************************/
1018
1019             /* COULOMB ELECTROSTATICS */
1020             velec            = _mm256_mul_ps(qq23,rinv23);
1021             felec            = _mm256_mul_ps(velec,rinvsq23);
1022
1023             /* Update potential sum for this i atom from the interaction with this j atom. */
1024             velec            = _mm256_andnot_ps(dummy_mask,velec);
1025             velecsum         = _mm256_add_ps(velecsum,velec);
1026
1027             fscal            = felec;
1028
1029             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1030
1031             /* Calculate temporary vectorial force */
1032             tx               = _mm256_mul_ps(fscal,dx23);
1033             ty               = _mm256_mul_ps(fscal,dy23);
1034             tz               = _mm256_mul_ps(fscal,dz23);
1035
1036             /* Update vectorial force */
1037             fix2             = _mm256_add_ps(fix2,tx);
1038             fiy2             = _mm256_add_ps(fiy2,ty);
1039             fiz2             = _mm256_add_ps(fiz2,tz);
1040
1041             fjx3             = _mm256_add_ps(fjx3,tx);
1042             fjy3             = _mm256_add_ps(fjy3,ty);
1043             fjz3             = _mm256_add_ps(fjz3,tz);
1044
1045             /**************************
1046              * CALCULATE INTERACTIONS *
1047              **************************/
1048
1049             /* COULOMB ELECTROSTATICS */
1050             velec            = _mm256_mul_ps(qq31,rinv31);
1051             felec            = _mm256_mul_ps(velec,rinvsq31);
1052
1053             /* Update potential sum for this i atom from the interaction with this j atom. */
1054             velec            = _mm256_andnot_ps(dummy_mask,velec);
1055             velecsum         = _mm256_add_ps(velecsum,velec);
1056
1057             fscal            = felec;
1058
1059             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1060
1061             /* Calculate temporary vectorial force */
1062             tx               = _mm256_mul_ps(fscal,dx31);
1063             ty               = _mm256_mul_ps(fscal,dy31);
1064             tz               = _mm256_mul_ps(fscal,dz31);
1065
1066             /* Update vectorial force */
1067             fix3             = _mm256_add_ps(fix3,tx);
1068             fiy3             = _mm256_add_ps(fiy3,ty);
1069             fiz3             = _mm256_add_ps(fiz3,tz);
1070
1071             fjx1             = _mm256_add_ps(fjx1,tx);
1072             fjy1             = _mm256_add_ps(fjy1,ty);
1073             fjz1             = _mm256_add_ps(fjz1,tz);
1074
1075             /**************************
1076              * CALCULATE INTERACTIONS *
1077              **************************/
1078
1079             /* COULOMB ELECTROSTATICS */
1080             velec            = _mm256_mul_ps(qq32,rinv32);
1081             felec            = _mm256_mul_ps(velec,rinvsq32);
1082
1083             /* Update potential sum for this i atom from the interaction with this j atom. */
1084             velec            = _mm256_andnot_ps(dummy_mask,velec);
1085             velecsum         = _mm256_add_ps(velecsum,velec);
1086
1087             fscal            = felec;
1088
1089             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1090
1091             /* Calculate temporary vectorial force */
1092             tx               = _mm256_mul_ps(fscal,dx32);
1093             ty               = _mm256_mul_ps(fscal,dy32);
1094             tz               = _mm256_mul_ps(fscal,dz32);
1095
1096             /* Update vectorial force */
1097             fix3             = _mm256_add_ps(fix3,tx);
1098             fiy3             = _mm256_add_ps(fiy3,ty);
1099             fiz3             = _mm256_add_ps(fiz3,tz);
1100
1101             fjx2             = _mm256_add_ps(fjx2,tx);
1102             fjy2             = _mm256_add_ps(fjy2,ty);
1103             fjz2             = _mm256_add_ps(fjz2,tz);
1104
1105             /**************************
1106              * CALCULATE INTERACTIONS *
1107              **************************/
1108
1109             /* COULOMB ELECTROSTATICS */
1110             velec            = _mm256_mul_ps(qq33,rinv33);
1111             felec            = _mm256_mul_ps(velec,rinvsq33);
1112
1113             /* Update potential sum for this i atom from the interaction with this j atom. */
1114             velec            = _mm256_andnot_ps(dummy_mask,velec);
1115             velecsum         = _mm256_add_ps(velecsum,velec);
1116
1117             fscal            = felec;
1118
1119             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1120
1121             /* Calculate temporary vectorial force */
1122             tx               = _mm256_mul_ps(fscal,dx33);
1123             ty               = _mm256_mul_ps(fscal,dy33);
1124             tz               = _mm256_mul_ps(fscal,dz33);
1125
1126             /* Update vectorial force */
1127             fix3             = _mm256_add_ps(fix3,tx);
1128             fiy3             = _mm256_add_ps(fiy3,ty);
1129             fiz3             = _mm256_add_ps(fiz3,tz);
1130
1131             fjx3             = _mm256_add_ps(fjx3,tx);
1132             fjy3             = _mm256_add_ps(fjy3,ty);
1133             fjz3             = _mm256_add_ps(fjz3,tz);
1134
1135             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1136             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1137             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1138             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1139             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
1140             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
1141             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
1142             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
1143
1144             gmx_mm256_decrement_4rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1145                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
1146                                                       fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1147
1148             /* Inner loop uses 303 flops */
1149         }
1150
1151         /* End of innermost loop */
1152
1153         gmx_mm256_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1154                                                  f+i_coord_offset,fshift+i_shift_offset);
1155
1156         ggid                        = gid[iidx];
1157         /* Update potential energies */
1158         gmx_mm256_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1159         gmx_mm256_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1160
1161         /* Increment number of inner iterations */
1162         inneriter                  += j_index_end - j_index_start;
1163
1164         /* Outer loop uses 26 flops */
1165     }
1166
1167     /* Increment number of outer iterations */
1168     outeriter        += nri;
1169
1170     /* Update outer/inner flops */
1171
1172     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_VF,outeriter*26 + inneriter*303);
1173 }
1174 /*
1175  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_F_avx_256_single
1176  * Electrostatics interaction: Coulomb
1177  * VdW interaction:            CubicSplineTable
1178  * Geometry:                   Water4-Water4
1179  * Calculate force/pot:        Force
1180  */
1181 void
1182 nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_F_avx_256_single
1183                     (t_nblist                    * gmx_restrict       nlist,
1184                      rvec                        * gmx_restrict          xx,
1185                      rvec                        * gmx_restrict          ff,
1186                      t_forcerec                  * gmx_restrict          fr,
1187                      t_mdatoms                   * gmx_restrict     mdatoms,
1188                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1189                      t_nrnb                      * gmx_restrict        nrnb)
1190 {
1191     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
1192      * just 0 for non-waters.
1193      * Suffixes A,B,C,D,E,F,G,H refer to j loop unrolling done with AVX, e.g. for the eight different
1194      * jnr indices corresponding to data put in the four positions in the SIMD register.
1195      */
1196     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
1197     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1198     int              jnrA,jnrB,jnrC,jnrD;
1199     int              jnrE,jnrF,jnrG,jnrH;
1200     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1201     int              jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1202     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1203     int              j_coord_offsetE,j_coord_offsetF,j_coord_offsetG,j_coord_offsetH;
1204     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
1205     real             rcutoff_scalar;
1206     real             *shiftvec,*fshift,*x,*f;
1207     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD,*fjptrE,*fjptrF,*fjptrG,*fjptrH;
1208     real             scratch[4*DIM];
1209     __m256           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1210     real *           vdwioffsetptr0;
1211     __m256           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1212     real *           vdwioffsetptr1;
1213     __m256           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1214     real *           vdwioffsetptr2;
1215     __m256           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1216     real *           vdwioffsetptr3;
1217     __m256           ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
1218     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D,vdwjidx0E,vdwjidx0F,vdwjidx0G,vdwjidx0H;
1219     __m256           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1220     int              vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D,vdwjidx1E,vdwjidx1F,vdwjidx1G,vdwjidx1H;
1221     __m256           jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1222     int              vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D,vdwjidx2E,vdwjidx2F,vdwjidx2G,vdwjidx2H;
1223     __m256           jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1224     int              vdwjidx3A,vdwjidx3B,vdwjidx3C,vdwjidx3D,vdwjidx3E,vdwjidx3F,vdwjidx3G,vdwjidx3H;
1225     __m256           jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
1226     __m256           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1227     __m256           dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1228     __m256           dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1229     __m256           dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
1230     __m256           dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1231     __m256           dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1232     __m256           dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
1233     __m256           dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
1234     __m256           dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
1235     __m256           dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
1236     __m256           velec,felec,velecsum,facel,crf,krf,krf2;
1237     real             *charge;
1238     int              nvdwtype;
1239     __m256           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1240     int              *vdwtype;
1241     real             *vdwparam;
1242     __m256           one_sixth   = _mm256_set1_ps(1.0/6.0);
1243     __m256           one_twelfth = _mm256_set1_ps(1.0/12.0);
1244     __m256i          vfitab;
1245     __m128i          vfitab_lo,vfitab_hi;
1246     __m128i          ifour       = _mm_set1_epi32(4);
1247     __m256           rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
1248     real             *vftab;
1249     __m256           dummy_mask,cutoff_mask;
1250     __m256           signbit = _mm256_castsi256_ps( _mm256_set1_epi32(0x80000000) );
1251     __m256           one     = _mm256_set1_ps(1.0);
1252     __m256           two     = _mm256_set1_ps(2.0);
1253     x                = xx[0];
1254     f                = ff[0];
1255
1256     nri              = nlist->nri;
1257     iinr             = nlist->iinr;
1258     jindex           = nlist->jindex;
1259     jjnr             = nlist->jjnr;
1260     shiftidx         = nlist->shift;
1261     gid              = nlist->gid;
1262     shiftvec         = fr->shift_vec[0];
1263     fshift           = fr->fshift[0];
1264     facel            = _mm256_set1_ps(fr->epsfac);
1265     charge           = mdatoms->chargeA;
1266     nvdwtype         = fr->ntype;
1267     vdwparam         = fr->nbfp;
1268     vdwtype          = mdatoms->typeA;
1269
1270     vftab            = kernel_data->table_vdw->data;
1271     vftabscale       = _mm256_set1_ps(kernel_data->table_vdw->scale);
1272
1273     /* Setup water-specific parameters */
1274     inr              = nlist->iinr[0];
1275     iq1              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+1]));
1276     iq2              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+2]));
1277     iq3              = _mm256_mul_ps(facel,_mm256_set1_ps(charge[inr+3]));
1278     vdwioffsetptr0   = vdwparam+2*nvdwtype*vdwtype[inr+0];
1279
1280     jq1              = _mm256_set1_ps(charge[inr+1]);
1281     jq2              = _mm256_set1_ps(charge[inr+2]);
1282     jq3              = _mm256_set1_ps(charge[inr+3]);
1283     vdwjidx0A        = 2*vdwtype[inr+0];
1284     c6_00            = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A]);
1285     c12_00           = _mm256_set1_ps(vdwioffsetptr0[vdwjidx0A+1]);
1286     qq11             = _mm256_mul_ps(iq1,jq1);
1287     qq12             = _mm256_mul_ps(iq1,jq2);
1288     qq13             = _mm256_mul_ps(iq1,jq3);
1289     qq21             = _mm256_mul_ps(iq2,jq1);
1290     qq22             = _mm256_mul_ps(iq2,jq2);
1291     qq23             = _mm256_mul_ps(iq2,jq3);
1292     qq31             = _mm256_mul_ps(iq3,jq1);
1293     qq32             = _mm256_mul_ps(iq3,jq2);
1294     qq33             = _mm256_mul_ps(iq3,jq3);
1295
1296     /* Avoid stupid compiler warnings */
1297     jnrA = jnrB = jnrC = jnrD = jnrE = jnrF = jnrG = jnrH = 0;
1298     j_coord_offsetA = 0;
1299     j_coord_offsetB = 0;
1300     j_coord_offsetC = 0;
1301     j_coord_offsetD = 0;
1302     j_coord_offsetE = 0;
1303     j_coord_offsetF = 0;
1304     j_coord_offsetG = 0;
1305     j_coord_offsetH = 0;
1306
1307     outeriter        = 0;
1308     inneriter        = 0;
1309
1310     for(iidx=0;iidx<4*DIM;iidx++)
1311     {
1312         scratch[iidx] = 0.0;
1313     }
1314
1315     /* Start outer loop over neighborlists */
1316     for(iidx=0; iidx<nri; iidx++)
1317     {
1318         /* Load shift vector for this list */
1319         i_shift_offset   = DIM*shiftidx[iidx];
1320
1321         /* Load limits for loop over neighbors */
1322         j_index_start    = jindex[iidx];
1323         j_index_end      = jindex[iidx+1];
1324
1325         /* Get outer coordinate index */
1326         inr              = iinr[iidx];
1327         i_coord_offset   = DIM*inr;
1328
1329         /* Load i particle coords and add shift vector */
1330         gmx_mm256_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1331                                                     &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
1332
1333         fix0             = _mm256_setzero_ps();
1334         fiy0             = _mm256_setzero_ps();
1335         fiz0             = _mm256_setzero_ps();
1336         fix1             = _mm256_setzero_ps();
1337         fiy1             = _mm256_setzero_ps();
1338         fiz1             = _mm256_setzero_ps();
1339         fix2             = _mm256_setzero_ps();
1340         fiy2             = _mm256_setzero_ps();
1341         fiz2             = _mm256_setzero_ps();
1342         fix3             = _mm256_setzero_ps();
1343         fiy3             = _mm256_setzero_ps();
1344         fiz3             = _mm256_setzero_ps();
1345
1346         /* Start inner kernel loop */
1347         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+7]>=0; jidx+=8)
1348         {
1349
1350             /* Get j neighbor index, and coordinate index */
1351             jnrA             = jjnr[jidx];
1352             jnrB             = jjnr[jidx+1];
1353             jnrC             = jjnr[jidx+2];
1354             jnrD             = jjnr[jidx+3];
1355             jnrE             = jjnr[jidx+4];
1356             jnrF             = jjnr[jidx+5];
1357             jnrG             = jjnr[jidx+6];
1358             jnrH             = jjnr[jidx+7];
1359             j_coord_offsetA  = DIM*jnrA;
1360             j_coord_offsetB  = DIM*jnrB;
1361             j_coord_offsetC  = DIM*jnrC;
1362             j_coord_offsetD  = DIM*jnrD;
1363             j_coord_offsetE  = DIM*jnrE;
1364             j_coord_offsetF  = DIM*jnrF;
1365             j_coord_offsetG  = DIM*jnrG;
1366             j_coord_offsetH  = DIM*jnrH;
1367
1368             /* load j atom coordinates */
1369             gmx_mm256_load_4rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1370                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1371                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1372                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1373                                                  &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
1374                                                  &jy2,&jz2,&jx3,&jy3,&jz3);
1375
1376             /* Calculate displacement vector */
1377             dx00             = _mm256_sub_ps(ix0,jx0);
1378             dy00             = _mm256_sub_ps(iy0,jy0);
1379             dz00             = _mm256_sub_ps(iz0,jz0);
1380             dx11             = _mm256_sub_ps(ix1,jx1);
1381             dy11             = _mm256_sub_ps(iy1,jy1);
1382             dz11             = _mm256_sub_ps(iz1,jz1);
1383             dx12             = _mm256_sub_ps(ix1,jx2);
1384             dy12             = _mm256_sub_ps(iy1,jy2);
1385             dz12             = _mm256_sub_ps(iz1,jz2);
1386             dx13             = _mm256_sub_ps(ix1,jx3);
1387             dy13             = _mm256_sub_ps(iy1,jy3);
1388             dz13             = _mm256_sub_ps(iz1,jz3);
1389             dx21             = _mm256_sub_ps(ix2,jx1);
1390             dy21             = _mm256_sub_ps(iy2,jy1);
1391             dz21             = _mm256_sub_ps(iz2,jz1);
1392             dx22             = _mm256_sub_ps(ix2,jx2);
1393             dy22             = _mm256_sub_ps(iy2,jy2);
1394             dz22             = _mm256_sub_ps(iz2,jz2);
1395             dx23             = _mm256_sub_ps(ix2,jx3);
1396             dy23             = _mm256_sub_ps(iy2,jy3);
1397             dz23             = _mm256_sub_ps(iz2,jz3);
1398             dx31             = _mm256_sub_ps(ix3,jx1);
1399             dy31             = _mm256_sub_ps(iy3,jy1);
1400             dz31             = _mm256_sub_ps(iz3,jz1);
1401             dx32             = _mm256_sub_ps(ix3,jx2);
1402             dy32             = _mm256_sub_ps(iy3,jy2);
1403             dz32             = _mm256_sub_ps(iz3,jz2);
1404             dx33             = _mm256_sub_ps(ix3,jx3);
1405             dy33             = _mm256_sub_ps(iy3,jy3);
1406             dz33             = _mm256_sub_ps(iz3,jz3);
1407
1408             /* Calculate squared distance and things based on it */
1409             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1410             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1411             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1412             rsq13            = gmx_mm256_calc_rsq_ps(dx13,dy13,dz13);
1413             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1414             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1415             rsq23            = gmx_mm256_calc_rsq_ps(dx23,dy23,dz23);
1416             rsq31            = gmx_mm256_calc_rsq_ps(dx31,dy31,dz31);
1417             rsq32            = gmx_mm256_calc_rsq_ps(dx32,dy32,dz32);
1418             rsq33            = gmx_mm256_calc_rsq_ps(dx33,dy33,dz33);
1419
1420             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
1421             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
1422             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
1423             rinv13           = gmx_mm256_invsqrt_ps(rsq13);
1424             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
1425             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
1426             rinv23           = gmx_mm256_invsqrt_ps(rsq23);
1427             rinv31           = gmx_mm256_invsqrt_ps(rsq31);
1428             rinv32           = gmx_mm256_invsqrt_ps(rsq32);
1429             rinv33           = gmx_mm256_invsqrt_ps(rsq33);
1430
1431             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1432             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1433             rinvsq13         = _mm256_mul_ps(rinv13,rinv13);
1434             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1435             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1436             rinvsq23         = _mm256_mul_ps(rinv23,rinv23);
1437             rinvsq31         = _mm256_mul_ps(rinv31,rinv31);
1438             rinvsq32         = _mm256_mul_ps(rinv32,rinv32);
1439             rinvsq33         = _mm256_mul_ps(rinv33,rinv33);
1440
1441             fjx0             = _mm256_setzero_ps();
1442             fjy0             = _mm256_setzero_ps();
1443             fjz0             = _mm256_setzero_ps();
1444             fjx1             = _mm256_setzero_ps();
1445             fjy1             = _mm256_setzero_ps();
1446             fjz1             = _mm256_setzero_ps();
1447             fjx2             = _mm256_setzero_ps();
1448             fjy2             = _mm256_setzero_ps();
1449             fjz2             = _mm256_setzero_ps();
1450             fjx3             = _mm256_setzero_ps();
1451             fjy3             = _mm256_setzero_ps();
1452             fjz3             = _mm256_setzero_ps();
1453
1454             /**************************
1455              * CALCULATE INTERACTIONS *
1456              **************************/
1457
1458             r00              = _mm256_mul_ps(rsq00,rinv00);
1459
1460             /* Calculate table index by multiplying r with table scale and truncate to integer */
1461             rt               = _mm256_mul_ps(r00,vftabscale);
1462             vfitab           = _mm256_cvttps_epi32(rt);
1463             vfeps            = _mm256_sub_ps(rt,_mm256_round_ps(rt, _MM_FROUND_FLOOR));
1464             /*         AVX1 does not support 256-bit integer operations, so now we go to 128-bit mode... */
1465             vfitab_lo        = _mm256_extractf128_si256(vfitab,0x0);
1466             vfitab_hi        = _mm256_extractf128_si256(vfitab,0x1);
1467             vfitab_lo        = _mm_slli_epi32(vfitab_lo,3);
1468             vfitab_hi        = _mm_slli_epi32(vfitab_hi,3);
1469
1470             /* CUBIC SPLINE TABLE DISPERSION */
1471             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
1472                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
1473             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
1474                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
1475             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
1476                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
1477             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
1478                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
1479             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
1480             Heps             = _mm256_mul_ps(vfeps,H);
1481             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
1482             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
1483             fvdw6            = _mm256_mul_ps(c6_00,FF);
1484
1485             /* CUBIC SPLINE TABLE REPULSION */
1486             vfitab_lo        = _mm_add_epi32(vfitab_lo,ifour);
1487             vfitab_hi        = _mm_add_epi32(vfitab_hi,ifour);
1488             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
1489                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
1490             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
1491                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
1492             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
1493                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
1494             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
1495                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
1496             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
1497             Heps             = _mm256_mul_ps(vfeps,H);
1498             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
1499             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
1500             fvdw12           = _mm256_mul_ps(c12_00,FF);
1501             fvdw             = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_add_ps(fvdw6,fvdw12),_mm256_mul_ps(vftabscale,rinv00)));
1502
1503             fscal            = fvdw;
1504
1505             /* Calculate temporary vectorial force */
1506             tx               = _mm256_mul_ps(fscal,dx00);
1507             ty               = _mm256_mul_ps(fscal,dy00);
1508             tz               = _mm256_mul_ps(fscal,dz00);
1509
1510             /* Update vectorial force */
1511             fix0             = _mm256_add_ps(fix0,tx);
1512             fiy0             = _mm256_add_ps(fiy0,ty);
1513             fiz0             = _mm256_add_ps(fiz0,tz);
1514
1515             fjx0             = _mm256_add_ps(fjx0,tx);
1516             fjy0             = _mm256_add_ps(fjy0,ty);
1517             fjz0             = _mm256_add_ps(fjz0,tz);
1518
1519             /**************************
1520              * CALCULATE INTERACTIONS *
1521              **************************/
1522
1523             /* COULOMB ELECTROSTATICS */
1524             velec            = _mm256_mul_ps(qq11,rinv11);
1525             felec            = _mm256_mul_ps(velec,rinvsq11);
1526
1527             fscal            = felec;
1528
1529             /* Calculate temporary vectorial force */
1530             tx               = _mm256_mul_ps(fscal,dx11);
1531             ty               = _mm256_mul_ps(fscal,dy11);
1532             tz               = _mm256_mul_ps(fscal,dz11);
1533
1534             /* Update vectorial force */
1535             fix1             = _mm256_add_ps(fix1,tx);
1536             fiy1             = _mm256_add_ps(fiy1,ty);
1537             fiz1             = _mm256_add_ps(fiz1,tz);
1538
1539             fjx1             = _mm256_add_ps(fjx1,tx);
1540             fjy1             = _mm256_add_ps(fjy1,ty);
1541             fjz1             = _mm256_add_ps(fjz1,tz);
1542
1543             /**************************
1544              * CALCULATE INTERACTIONS *
1545              **************************/
1546
1547             /* COULOMB ELECTROSTATICS */
1548             velec            = _mm256_mul_ps(qq12,rinv12);
1549             felec            = _mm256_mul_ps(velec,rinvsq12);
1550
1551             fscal            = felec;
1552
1553             /* Calculate temporary vectorial force */
1554             tx               = _mm256_mul_ps(fscal,dx12);
1555             ty               = _mm256_mul_ps(fscal,dy12);
1556             tz               = _mm256_mul_ps(fscal,dz12);
1557
1558             /* Update vectorial force */
1559             fix1             = _mm256_add_ps(fix1,tx);
1560             fiy1             = _mm256_add_ps(fiy1,ty);
1561             fiz1             = _mm256_add_ps(fiz1,tz);
1562
1563             fjx2             = _mm256_add_ps(fjx2,tx);
1564             fjy2             = _mm256_add_ps(fjy2,ty);
1565             fjz2             = _mm256_add_ps(fjz2,tz);
1566
1567             /**************************
1568              * CALCULATE INTERACTIONS *
1569              **************************/
1570
1571             /* COULOMB ELECTROSTATICS */
1572             velec            = _mm256_mul_ps(qq13,rinv13);
1573             felec            = _mm256_mul_ps(velec,rinvsq13);
1574
1575             fscal            = felec;
1576
1577             /* Calculate temporary vectorial force */
1578             tx               = _mm256_mul_ps(fscal,dx13);
1579             ty               = _mm256_mul_ps(fscal,dy13);
1580             tz               = _mm256_mul_ps(fscal,dz13);
1581
1582             /* Update vectorial force */
1583             fix1             = _mm256_add_ps(fix1,tx);
1584             fiy1             = _mm256_add_ps(fiy1,ty);
1585             fiz1             = _mm256_add_ps(fiz1,tz);
1586
1587             fjx3             = _mm256_add_ps(fjx3,tx);
1588             fjy3             = _mm256_add_ps(fjy3,ty);
1589             fjz3             = _mm256_add_ps(fjz3,tz);
1590
1591             /**************************
1592              * CALCULATE INTERACTIONS *
1593              **************************/
1594
1595             /* COULOMB ELECTROSTATICS */
1596             velec            = _mm256_mul_ps(qq21,rinv21);
1597             felec            = _mm256_mul_ps(velec,rinvsq21);
1598
1599             fscal            = felec;
1600
1601             /* Calculate temporary vectorial force */
1602             tx               = _mm256_mul_ps(fscal,dx21);
1603             ty               = _mm256_mul_ps(fscal,dy21);
1604             tz               = _mm256_mul_ps(fscal,dz21);
1605
1606             /* Update vectorial force */
1607             fix2             = _mm256_add_ps(fix2,tx);
1608             fiy2             = _mm256_add_ps(fiy2,ty);
1609             fiz2             = _mm256_add_ps(fiz2,tz);
1610
1611             fjx1             = _mm256_add_ps(fjx1,tx);
1612             fjy1             = _mm256_add_ps(fjy1,ty);
1613             fjz1             = _mm256_add_ps(fjz1,tz);
1614
1615             /**************************
1616              * CALCULATE INTERACTIONS *
1617              **************************/
1618
1619             /* COULOMB ELECTROSTATICS */
1620             velec            = _mm256_mul_ps(qq22,rinv22);
1621             felec            = _mm256_mul_ps(velec,rinvsq22);
1622
1623             fscal            = felec;
1624
1625             /* Calculate temporary vectorial force */
1626             tx               = _mm256_mul_ps(fscal,dx22);
1627             ty               = _mm256_mul_ps(fscal,dy22);
1628             tz               = _mm256_mul_ps(fscal,dz22);
1629
1630             /* Update vectorial force */
1631             fix2             = _mm256_add_ps(fix2,tx);
1632             fiy2             = _mm256_add_ps(fiy2,ty);
1633             fiz2             = _mm256_add_ps(fiz2,tz);
1634
1635             fjx2             = _mm256_add_ps(fjx2,tx);
1636             fjy2             = _mm256_add_ps(fjy2,ty);
1637             fjz2             = _mm256_add_ps(fjz2,tz);
1638
1639             /**************************
1640              * CALCULATE INTERACTIONS *
1641              **************************/
1642
1643             /* COULOMB ELECTROSTATICS */
1644             velec            = _mm256_mul_ps(qq23,rinv23);
1645             felec            = _mm256_mul_ps(velec,rinvsq23);
1646
1647             fscal            = felec;
1648
1649             /* Calculate temporary vectorial force */
1650             tx               = _mm256_mul_ps(fscal,dx23);
1651             ty               = _mm256_mul_ps(fscal,dy23);
1652             tz               = _mm256_mul_ps(fscal,dz23);
1653
1654             /* Update vectorial force */
1655             fix2             = _mm256_add_ps(fix2,tx);
1656             fiy2             = _mm256_add_ps(fiy2,ty);
1657             fiz2             = _mm256_add_ps(fiz2,tz);
1658
1659             fjx3             = _mm256_add_ps(fjx3,tx);
1660             fjy3             = _mm256_add_ps(fjy3,ty);
1661             fjz3             = _mm256_add_ps(fjz3,tz);
1662
1663             /**************************
1664              * CALCULATE INTERACTIONS *
1665              **************************/
1666
1667             /* COULOMB ELECTROSTATICS */
1668             velec            = _mm256_mul_ps(qq31,rinv31);
1669             felec            = _mm256_mul_ps(velec,rinvsq31);
1670
1671             fscal            = felec;
1672
1673             /* Calculate temporary vectorial force */
1674             tx               = _mm256_mul_ps(fscal,dx31);
1675             ty               = _mm256_mul_ps(fscal,dy31);
1676             tz               = _mm256_mul_ps(fscal,dz31);
1677
1678             /* Update vectorial force */
1679             fix3             = _mm256_add_ps(fix3,tx);
1680             fiy3             = _mm256_add_ps(fiy3,ty);
1681             fiz3             = _mm256_add_ps(fiz3,tz);
1682
1683             fjx1             = _mm256_add_ps(fjx1,tx);
1684             fjy1             = _mm256_add_ps(fjy1,ty);
1685             fjz1             = _mm256_add_ps(fjz1,tz);
1686
1687             /**************************
1688              * CALCULATE INTERACTIONS *
1689              **************************/
1690
1691             /* COULOMB ELECTROSTATICS */
1692             velec            = _mm256_mul_ps(qq32,rinv32);
1693             felec            = _mm256_mul_ps(velec,rinvsq32);
1694
1695             fscal            = felec;
1696
1697             /* Calculate temporary vectorial force */
1698             tx               = _mm256_mul_ps(fscal,dx32);
1699             ty               = _mm256_mul_ps(fscal,dy32);
1700             tz               = _mm256_mul_ps(fscal,dz32);
1701
1702             /* Update vectorial force */
1703             fix3             = _mm256_add_ps(fix3,tx);
1704             fiy3             = _mm256_add_ps(fiy3,ty);
1705             fiz3             = _mm256_add_ps(fiz3,tz);
1706
1707             fjx2             = _mm256_add_ps(fjx2,tx);
1708             fjy2             = _mm256_add_ps(fjy2,ty);
1709             fjz2             = _mm256_add_ps(fjz2,tz);
1710
1711             /**************************
1712              * CALCULATE INTERACTIONS *
1713              **************************/
1714
1715             /* COULOMB ELECTROSTATICS */
1716             velec            = _mm256_mul_ps(qq33,rinv33);
1717             felec            = _mm256_mul_ps(velec,rinvsq33);
1718
1719             fscal            = felec;
1720
1721             /* Calculate temporary vectorial force */
1722             tx               = _mm256_mul_ps(fscal,dx33);
1723             ty               = _mm256_mul_ps(fscal,dy33);
1724             tz               = _mm256_mul_ps(fscal,dz33);
1725
1726             /* Update vectorial force */
1727             fix3             = _mm256_add_ps(fix3,tx);
1728             fiy3             = _mm256_add_ps(fiy3,ty);
1729             fiz3             = _mm256_add_ps(fiz3,tz);
1730
1731             fjx3             = _mm256_add_ps(fjx3,tx);
1732             fjy3             = _mm256_add_ps(fjy3,ty);
1733             fjz3             = _mm256_add_ps(fjz3,tz);
1734
1735             fjptrA             = f+j_coord_offsetA;
1736             fjptrB             = f+j_coord_offsetB;
1737             fjptrC             = f+j_coord_offsetC;
1738             fjptrD             = f+j_coord_offsetD;
1739             fjptrE             = f+j_coord_offsetE;
1740             fjptrF             = f+j_coord_offsetF;
1741             fjptrG             = f+j_coord_offsetG;
1742             fjptrH             = f+j_coord_offsetH;
1743
1744             gmx_mm256_decrement_4rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
1745                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
1746                                                       fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1747
1748             /* Inner loop uses 285 flops */
1749         }
1750
1751         if(jidx<j_index_end)
1752         {
1753
1754             /* Get j neighbor index, and coordinate index */
1755             jnrlistA         = jjnr[jidx];
1756             jnrlistB         = jjnr[jidx+1];
1757             jnrlistC         = jjnr[jidx+2];
1758             jnrlistD         = jjnr[jidx+3];
1759             jnrlistE         = jjnr[jidx+4];
1760             jnrlistF         = jjnr[jidx+5];
1761             jnrlistG         = jjnr[jidx+6];
1762             jnrlistH         = jjnr[jidx+7];
1763             /* Sign of each element will be negative for non-real atoms.
1764              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1765              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1766              */
1767             dummy_mask = gmx_mm256_set_m128(gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx+4)),_mm_setzero_si128())),
1768                                             gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128())));
1769                                             
1770             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
1771             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
1772             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
1773             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
1774             jnrE       = (jnrlistE>=0) ? jnrlistE : 0;
1775             jnrF       = (jnrlistF>=0) ? jnrlistF : 0;
1776             jnrG       = (jnrlistG>=0) ? jnrlistG : 0;
1777             jnrH       = (jnrlistH>=0) ? jnrlistH : 0;
1778             j_coord_offsetA  = DIM*jnrA;
1779             j_coord_offsetB  = DIM*jnrB;
1780             j_coord_offsetC  = DIM*jnrC;
1781             j_coord_offsetD  = DIM*jnrD;
1782             j_coord_offsetE  = DIM*jnrE;
1783             j_coord_offsetF  = DIM*jnrF;
1784             j_coord_offsetG  = DIM*jnrG;
1785             j_coord_offsetH  = DIM*jnrH;
1786
1787             /* load j atom coordinates */
1788             gmx_mm256_load_4rvec_8ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1789                                                  x+j_coord_offsetC,x+j_coord_offsetD,
1790                                                  x+j_coord_offsetE,x+j_coord_offsetF,
1791                                                  x+j_coord_offsetG,x+j_coord_offsetH,
1792                                                  &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
1793                                                  &jy2,&jz2,&jx3,&jy3,&jz3);
1794
1795             /* Calculate displacement vector */
1796             dx00             = _mm256_sub_ps(ix0,jx0);
1797             dy00             = _mm256_sub_ps(iy0,jy0);
1798             dz00             = _mm256_sub_ps(iz0,jz0);
1799             dx11             = _mm256_sub_ps(ix1,jx1);
1800             dy11             = _mm256_sub_ps(iy1,jy1);
1801             dz11             = _mm256_sub_ps(iz1,jz1);
1802             dx12             = _mm256_sub_ps(ix1,jx2);
1803             dy12             = _mm256_sub_ps(iy1,jy2);
1804             dz12             = _mm256_sub_ps(iz1,jz2);
1805             dx13             = _mm256_sub_ps(ix1,jx3);
1806             dy13             = _mm256_sub_ps(iy1,jy3);
1807             dz13             = _mm256_sub_ps(iz1,jz3);
1808             dx21             = _mm256_sub_ps(ix2,jx1);
1809             dy21             = _mm256_sub_ps(iy2,jy1);
1810             dz21             = _mm256_sub_ps(iz2,jz1);
1811             dx22             = _mm256_sub_ps(ix2,jx2);
1812             dy22             = _mm256_sub_ps(iy2,jy2);
1813             dz22             = _mm256_sub_ps(iz2,jz2);
1814             dx23             = _mm256_sub_ps(ix2,jx3);
1815             dy23             = _mm256_sub_ps(iy2,jy3);
1816             dz23             = _mm256_sub_ps(iz2,jz3);
1817             dx31             = _mm256_sub_ps(ix3,jx1);
1818             dy31             = _mm256_sub_ps(iy3,jy1);
1819             dz31             = _mm256_sub_ps(iz3,jz1);
1820             dx32             = _mm256_sub_ps(ix3,jx2);
1821             dy32             = _mm256_sub_ps(iy3,jy2);
1822             dz32             = _mm256_sub_ps(iz3,jz2);
1823             dx33             = _mm256_sub_ps(ix3,jx3);
1824             dy33             = _mm256_sub_ps(iy3,jy3);
1825             dz33             = _mm256_sub_ps(iz3,jz3);
1826
1827             /* Calculate squared distance and things based on it */
1828             rsq00            = gmx_mm256_calc_rsq_ps(dx00,dy00,dz00);
1829             rsq11            = gmx_mm256_calc_rsq_ps(dx11,dy11,dz11);
1830             rsq12            = gmx_mm256_calc_rsq_ps(dx12,dy12,dz12);
1831             rsq13            = gmx_mm256_calc_rsq_ps(dx13,dy13,dz13);
1832             rsq21            = gmx_mm256_calc_rsq_ps(dx21,dy21,dz21);
1833             rsq22            = gmx_mm256_calc_rsq_ps(dx22,dy22,dz22);
1834             rsq23            = gmx_mm256_calc_rsq_ps(dx23,dy23,dz23);
1835             rsq31            = gmx_mm256_calc_rsq_ps(dx31,dy31,dz31);
1836             rsq32            = gmx_mm256_calc_rsq_ps(dx32,dy32,dz32);
1837             rsq33            = gmx_mm256_calc_rsq_ps(dx33,dy33,dz33);
1838
1839             rinv00           = gmx_mm256_invsqrt_ps(rsq00);
1840             rinv11           = gmx_mm256_invsqrt_ps(rsq11);
1841             rinv12           = gmx_mm256_invsqrt_ps(rsq12);
1842             rinv13           = gmx_mm256_invsqrt_ps(rsq13);
1843             rinv21           = gmx_mm256_invsqrt_ps(rsq21);
1844             rinv22           = gmx_mm256_invsqrt_ps(rsq22);
1845             rinv23           = gmx_mm256_invsqrt_ps(rsq23);
1846             rinv31           = gmx_mm256_invsqrt_ps(rsq31);
1847             rinv32           = gmx_mm256_invsqrt_ps(rsq32);
1848             rinv33           = gmx_mm256_invsqrt_ps(rsq33);
1849
1850             rinvsq11         = _mm256_mul_ps(rinv11,rinv11);
1851             rinvsq12         = _mm256_mul_ps(rinv12,rinv12);
1852             rinvsq13         = _mm256_mul_ps(rinv13,rinv13);
1853             rinvsq21         = _mm256_mul_ps(rinv21,rinv21);
1854             rinvsq22         = _mm256_mul_ps(rinv22,rinv22);
1855             rinvsq23         = _mm256_mul_ps(rinv23,rinv23);
1856             rinvsq31         = _mm256_mul_ps(rinv31,rinv31);
1857             rinvsq32         = _mm256_mul_ps(rinv32,rinv32);
1858             rinvsq33         = _mm256_mul_ps(rinv33,rinv33);
1859
1860             fjx0             = _mm256_setzero_ps();
1861             fjy0             = _mm256_setzero_ps();
1862             fjz0             = _mm256_setzero_ps();
1863             fjx1             = _mm256_setzero_ps();
1864             fjy1             = _mm256_setzero_ps();
1865             fjz1             = _mm256_setzero_ps();
1866             fjx2             = _mm256_setzero_ps();
1867             fjy2             = _mm256_setzero_ps();
1868             fjz2             = _mm256_setzero_ps();
1869             fjx3             = _mm256_setzero_ps();
1870             fjy3             = _mm256_setzero_ps();
1871             fjz3             = _mm256_setzero_ps();
1872
1873             /**************************
1874              * CALCULATE INTERACTIONS *
1875              **************************/
1876
1877             r00              = _mm256_mul_ps(rsq00,rinv00);
1878             r00              = _mm256_andnot_ps(dummy_mask,r00);
1879
1880             /* Calculate table index by multiplying r with table scale and truncate to integer */
1881             rt               = _mm256_mul_ps(r00,vftabscale);
1882             vfitab           = _mm256_cvttps_epi32(rt);
1883             vfeps            = _mm256_sub_ps(rt,_mm256_round_ps(rt, _MM_FROUND_FLOOR));
1884             /*         AVX1 does not support 256-bit integer operations, so now we go to 128-bit mode... */
1885             vfitab_lo        = _mm256_extractf128_si256(vfitab,0x0);
1886             vfitab_hi        = _mm256_extractf128_si256(vfitab,0x1);
1887             vfitab_lo        = _mm_slli_epi32(vfitab_lo,3);
1888             vfitab_hi        = _mm_slli_epi32(vfitab_hi,3);
1889
1890             /* CUBIC SPLINE TABLE DISPERSION */
1891             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
1892                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
1893             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
1894                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
1895             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
1896                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
1897             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
1898                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
1899             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
1900             Heps             = _mm256_mul_ps(vfeps,H);
1901             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
1902             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
1903             fvdw6            = _mm256_mul_ps(c6_00,FF);
1904
1905             /* CUBIC SPLINE TABLE REPULSION */
1906             vfitab_lo        = _mm_add_epi32(vfitab_lo,ifour);
1907             vfitab_hi        = _mm_add_epi32(vfitab_hi,ifour);
1908             Y                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,0)),
1909                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,0)));
1910             F                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,1)),
1911                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,1)));
1912             G                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,2)),
1913                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,2)));
1914             H                = gmx_mm256_set_m128(_mm_load_ps(vftab + _mm_extract_epi32(vfitab_hi,3)),
1915                                                   _mm_load_ps(vftab + _mm_extract_epi32(vfitab_lo,3)));
1916             GMX_MM256_HALFTRANSPOSE4_PS(Y,F,G,H);
1917             Heps             = _mm256_mul_ps(vfeps,H);
1918             Fp               = _mm256_add_ps(F,_mm256_mul_ps(vfeps,_mm256_add_ps(G,Heps)));
1919             FF               = _mm256_add_ps(Fp,_mm256_mul_ps(vfeps,_mm256_add_ps(G,_mm256_add_ps(Heps,Heps))));
1920             fvdw12           = _mm256_mul_ps(c12_00,FF);
1921             fvdw             = _mm256_xor_ps(signbit,_mm256_mul_ps(_mm256_add_ps(fvdw6,fvdw12),_mm256_mul_ps(vftabscale,rinv00)));
1922
1923             fscal            = fvdw;
1924
1925             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1926
1927             /* Calculate temporary vectorial force */
1928             tx               = _mm256_mul_ps(fscal,dx00);
1929             ty               = _mm256_mul_ps(fscal,dy00);
1930             tz               = _mm256_mul_ps(fscal,dz00);
1931
1932             /* Update vectorial force */
1933             fix0             = _mm256_add_ps(fix0,tx);
1934             fiy0             = _mm256_add_ps(fiy0,ty);
1935             fiz0             = _mm256_add_ps(fiz0,tz);
1936
1937             fjx0             = _mm256_add_ps(fjx0,tx);
1938             fjy0             = _mm256_add_ps(fjy0,ty);
1939             fjz0             = _mm256_add_ps(fjz0,tz);
1940
1941             /**************************
1942              * CALCULATE INTERACTIONS *
1943              **************************/
1944
1945             /* COULOMB ELECTROSTATICS */
1946             velec            = _mm256_mul_ps(qq11,rinv11);
1947             felec            = _mm256_mul_ps(velec,rinvsq11);
1948
1949             fscal            = felec;
1950
1951             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1952
1953             /* Calculate temporary vectorial force */
1954             tx               = _mm256_mul_ps(fscal,dx11);
1955             ty               = _mm256_mul_ps(fscal,dy11);
1956             tz               = _mm256_mul_ps(fscal,dz11);
1957
1958             /* Update vectorial force */
1959             fix1             = _mm256_add_ps(fix1,tx);
1960             fiy1             = _mm256_add_ps(fiy1,ty);
1961             fiz1             = _mm256_add_ps(fiz1,tz);
1962
1963             fjx1             = _mm256_add_ps(fjx1,tx);
1964             fjy1             = _mm256_add_ps(fjy1,ty);
1965             fjz1             = _mm256_add_ps(fjz1,tz);
1966
1967             /**************************
1968              * CALCULATE INTERACTIONS *
1969              **************************/
1970
1971             /* COULOMB ELECTROSTATICS */
1972             velec            = _mm256_mul_ps(qq12,rinv12);
1973             felec            = _mm256_mul_ps(velec,rinvsq12);
1974
1975             fscal            = felec;
1976
1977             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
1978
1979             /* Calculate temporary vectorial force */
1980             tx               = _mm256_mul_ps(fscal,dx12);
1981             ty               = _mm256_mul_ps(fscal,dy12);
1982             tz               = _mm256_mul_ps(fscal,dz12);
1983
1984             /* Update vectorial force */
1985             fix1             = _mm256_add_ps(fix1,tx);
1986             fiy1             = _mm256_add_ps(fiy1,ty);
1987             fiz1             = _mm256_add_ps(fiz1,tz);
1988
1989             fjx2             = _mm256_add_ps(fjx2,tx);
1990             fjy2             = _mm256_add_ps(fjy2,ty);
1991             fjz2             = _mm256_add_ps(fjz2,tz);
1992
1993             /**************************
1994              * CALCULATE INTERACTIONS *
1995              **************************/
1996
1997             /* COULOMB ELECTROSTATICS */
1998             velec            = _mm256_mul_ps(qq13,rinv13);
1999             felec            = _mm256_mul_ps(velec,rinvsq13);
2000
2001             fscal            = felec;
2002
2003             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2004
2005             /* Calculate temporary vectorial force */
2006             tx               = _mm256_mul_ps(fscal,dx13);
2007             ty               = _mm256_mul_ps(fscal,dy13);
2008             tz               = _mm256_mul_ps(fscal,dz13);
2009
2010             /* Update vectorial force */
2011             fix1             = _mm256_add_ps(fix1,tx);
2012             fiy1             = _mm256_add_ps(fiy1,ty);
2013             fiz1             = _mm256_add_ps(fiz1,tz);
2014
2015             fjx3             = _mm256_add_ps(fjx3,tx);
2016             fjy3             = _mm256_add_ps(fjy3,ty);
2017             fjz3             = _mm256_add_ps(fjz3,tz);
2018
2019             /**************************
2020              * CALCULATE INTERACTIONS *
2021              **************************/
2022
2023             /* COULOMB ELECTROSTATICS */
2024             velec            = _mm256_mul_ps(qq21,rinv21);
2025             felec            = _mm256_mul_ps(velec,rinvsq21);
2026
2027             fscal            = felec;
2028
2029             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2030
2031             /* Calculate temporary vectorial force */
2032             tx               = _mm256_mul_ps(fscal,dx21);
2033             ty               = _mm256_mul_ps(fscal,dy21);
2034             tz               = _mm256_mul_ps(fscal,dz21);
2035
2036             /* Update vectorial force */
2037             fix2             = _mm256_add_ps(fix2,tx);
2038             fiy2             = _mm256_add_ps(fiy2,ty);
2039             fiz2             = _mm256_add_ps(fiz2,tz);
2040
2041             fjx1             = _mm256_add_ps(fjx1,tx);
2042             fjy1             = _mm256_add_ps(fjy1,ty);
2043             fjz1             = _mm256_add_ps(fjz1,tz);
2044
2045             /**************************
2046              * CALCULATE INTERACTIONS *
2047              **************************/
2048
2049             /* COULOMB ELECTROSTATICS */
2050             velec            = _mm256_mul_ps(qq22,rinv22);
2051             felec            = _mm256_mul_ps(velec,rinvsq22);
2052
2053             fscal            = felec;
2054
2055             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2056
2057             /* Calculate temporary vectorial force */
2058             tx               = _mm256_mul_ps(fscal,dx22);
2059             ty               = _mm256_mul_ps(fscal,dy22);
2060             tz               = _mm256_mul_ps(fscal,dz22);
2061
2062             /* Update vectorial force */
2063             fix2             = _mm256_add_ps(fix2,tx);
2064             fiy2             = _mm256_add_ps(fiy2,ty);
2065             fiz2             = _mm256_add_ps(fiz2,tz);
2066
2067             fjx2             = _mm256_add_ps(fjx2,tx);
2068             fjy2             = _mm256_add_ps(fjy2,ty);
2069             fjz2             = _mm256_add_ps(fjz2,tz);
2070
2071             /**************************
2072              * CALCULATE INTERACTIONS *
2073              **************************/
2074
2075             /* COULOMB ELECTROSTATICS */
2076             velec            = _mm256_mul_ps(qq23,rinv23);
2077             felec            = _mm256_mul_ps(velec,rinvsq23);
2078
2079             fscal            = felec;
2080
2081             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2082
2083             /* Calculate temporary vectorial force */
2084             tx               = _mm256_mul_ps(fscal,dx23);
2085             ty               = _mm256_mul_ps(fscal,dy23);
2086             tz               = _mm256_mul_ps(fscal,dz23);
2087
2088             /* Update vectorial force */
2089             fix2             = _mm256_add_ps(fix2,tx);
2090             fiy2             = _mm256_add_ps(fiy2,ty);
2091             fiz2             = _mm256_add_ps(fiz2,tz);
2092
2093             fjx3             = _mm256_add_ps(fjx3,tx);
2094             fjy3             = _mm256_add_ps(fjy3,ty);
2095             fjz3             = _mm256_add_ps(fjz3,tz);
2096
2097             /**************************
2098              * CALCULATE INTERACTIONS *
2099              **************************/
2100
2101             /* COULOMB ELECTROSTATICS */
2102             velec            = _mm256_mul_ps(qq31,rinv31);
2103             felec            = _mm256_mul_ps(velec,rinvsq31);
2104
2105             fscal            = felec;
2106
2107             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2108
2109             /* Calculate temporary vectorial force */
2110             tx               = _mm256_mul_ps(fscal,dx31);
2111             ty               = _mm256_mul_ps(fscal,dy31);
2112             tz               = _mm256_mul_ps(fscal,dz31);
2113
2114             /* Update vectorial force */
2115             fix3             = _mm256_add_ps(fix3,tx);
2116             fiy3             = _mm256_add_ps(fiy3,ty);
2117             fiz3             = _mm256_add_ps(fiz3,tz);
2118
2119             fjx1             = _mm256_add_ps(fjx1,tx);
2120             fjy1             = _mm256_add_ps(fjy1,ty);
2121             fjz1             = _mm256_add_ps(fjz1,tz);
2122
2123             /**************************
2124              * CALCULATE INTERACTIONS *
2125              **************************/
2126
2127             /* COULOMB ELECTROSTATICS */
2128             velec            = _mm256_mul_ps(qq32,rinv32);
2129             felec            = _mm256_mul_ps(velec,rinvsq32);
2130
2131             fscal            = felec;
2132
2133             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2134
2135             /* Calculate temporary vectorial force */
2136             tx               = _mm256_mul_ps(fscal,dx32);
2137             ty               = _mm256_mul_ps(fscal,dy32);
2138             tz               = _mm256_mul_ps(fscal,dz32);
2139
2140             /* Update vectorial force */
2141             fix3             = _mm256_add_ps(fix3,tx);
2142             fiy3             = _mm256_add_ps(fiy3,ty);
2143             fiz3             = _mm256_add_ps(fiz3,tz);
2144
2145             fjx2             = _mm256_add_ps(fjx2,tx);
2146             fjy2             = _mm256_add_ps(fjy2,ty);
2147             fjz2             = _mm256_add_ps(fjz2,tz);
2148
2149             /**************************
2150              * CALCULATE INTERACTIONS *
2151              **************************/
2152
2153             /* COULOMB ELECTROSTATICS */
2154             velec            = _mm256_mul_ps(qq33,rinv33);
2155             felec            = _mm256_mul_ps(velec,rinvsq33);
2156
2157             fscal            = felec;
2158
2159             fscal            = _mm256_andnot_ps(dummy_mask,fscal);
2160
2161             /* Calculate temporary vectorial force */
2162             tx               = _mm256_mul_ps(fscal,dx33);
2163             ty               = _mm256_mul_ps(fscal,dy33);
2164             tz               = _mm256_mul_ps(fscal,dz33);
2165
2166             /* Update vectorial force */
2167             fix3             = _mm256_add_ps(fix3,tx);
2168             fiy3             = _mm256_add_ps(fiy3,ty);
2169             fiz3             = _mm256_add_ps(fiz3,tz);
2170
2171             fjx3             = _mm256_add_ps(fjx3,tx);
2172             fjy3             = _mm256_add_ps(fjy3,ty);
2173             fjz3             = _mm256_add_ps(fjz3,tz);
2174
2175             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
2176             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
2177             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
2178             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
2179             fjptrE             = (jnrlistE>=0) ? f+j_coord_offsetE : scratch;
2180             fjptrF             = (jnrlistF>=0) ? f+j_coord_offsetF : scratch;
2181             fjptrG             = (jnrlistG>=0) ? f+j_coord_offsetG : scratch;
2182             fjptrH             = (jnrlistH>=0) ? f+j_coord_offsetH : scratch;
2183
2184             gmx_mm256_decrement_4rvec_8ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjptrE,fjptrF,fjptrG,fjptrH,
2185                                                       fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
2186                                                       fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
2187
2188             /* Inner loop uses 286 flops */
2189         }
2190
2191         /* End of innermost loop */
2192
2193         gmx_mm256_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
2194                                                  f+i_coord_offset,fshift+i_shift_offset);
2195
2196         /* Increment number of inner iterations */
2197         inneriter                  += j_index_end - j_index_start;
2198
2199         /* Outer loop uses 24 flops */
2200     }
2201
2202     /* Increment number of outer iterations */
2203     outeriter        += nri;
2204
2205     /* Update outer/inner flops */
2206
2207     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_F,outeriter*24 + inneriter*286);
2208 }