2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS avx_256_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
49 #include "gromacs/simd/math_x86_avx_256_double.h"
50 #include "kernelutil_x86_avx_256_double.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwCSTab_GeomW3W3_VF_avx_256_double
54 * Electrostatics interaction: Ewald
55 * VdW interaction: CubicSplineTable
56 * Geometry: Water3-Water3
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecEw_VdwCSTab_GeomW3W3_VF_avx_256_double
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B,C,D refer to j loop unrolling done with AVX, e.g. for the four different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
76 int jnrA,jnrB,jnrC,jnrD;
77 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
78 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
79 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
80 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
82 real *shiftvec,*fshift,*x,*f;
83 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
85 __m256d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86 real * vdwioffsetptr0;
87 __m256d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
88 real * vdwioffsetptr1;
89 __m256d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
90 real * vdwioffsetptr2;
91 __m256d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
92 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
93 __m256d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
94 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
95 __m256d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
96 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
97 __m256d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
98 __m256d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
99 __m256d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
100 __m256d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
101 __m256d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
102 __m256d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
103 __m256d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
104 __m256d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
105 __m256d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
106 __m256d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
107 __m256d velec,felec,velecsum,facel,crf,krf,krf2;
110 __m256d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
113 __m256d one_sixth = _mm256_set1_pd(1.0/6.0);
114 __m256d one_twelfth = _mm256_set1_pd(1.0/12.0);
116 __m128i ifour = _mm_set1_epi32(4);
117 __m256d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
120 __m256d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
121 __m256d beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
123 __m256d dummy_mask,cutoff_mask;
124 __m128 tmpmask0,tmpmask1;
125 __m256d signbit = _mm256_castsi256_pd( _mm256_set1_epi32(0x80000000) );
126 __m256d one = _mm256_set1_pd(1.0);
127 __m256d two = _mm256_set1_pd(2.0);
133 jindex = nlist->jindex;
135 shiftidx = nlist->shift;
137 shiftvec = fr->shift_vec[0];
138 fshift = fr->fshift[0];
139 facel = _mm256_set1_pd(fr->epsfac);
140 charge = mdatoms->chargeA;
141 nvdwtype = fr->ntype;
143 vdwtype = mdatoms->typeA;
145 vftab = kernel_data->table_vdw->data;
146 vftabscale = _mm256_set1_pd(kernel_data->table_vdw->scale);
148 sh_ewald = _mm256_set1_pd(fr->ic->sh_ewald);
149 beta = _mm256_set1_pd(fr->ic->ewaldcoeff_q);
150 beta2 = _mm256_mul_pd(beta,beta);
151 beta3 = _mm256_mul_pd(beta,beta2);
153 ewtab = fr->ic->tabq_coul_FDV0;
154 ewtabscale = _mm256_set1_pd(fr->ic->tabq_scale);
155 ewtabhalfspace = _mm256_set1_pd(0.5/fr->ic->tabq_scale);
157 /* Setup water-specific parameters */
158 inr = nlist->iinr[0];
159 iq0 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+0]));
160 iq1 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+1]));
161 iq2 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+2]));
162 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
164 jq0 = _mm256_set1_pd(charge[inr+0]);
165 jq1 = _mm256_set1_pd(charge[inr+1]);
166 jq2 = _mm256_set1_pd(charge[inr+2]);
167 vdwjidx0A = 2*vdwtype[inr+0];
168 qq00 = _mm256_mul_pd(iq0,jq0);
169 c6_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A]);
170 c12_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A+1]);
171 qq01 = _mm256_mul_pd(iq0,jq1);
172 qq02 = _mm256_mul_pd(iq0,jq2);
173 qq10 = _mm256_mul_pd(iq1,jq0);
174 qq11 = _mm256_mul_pd(iq1,jq1);
175 qq12 = _mm256_mul_pd(iq1,jq2);
176 qq20 = _mm256_mul_pd(iq2,jq0);
177 qq21 = _mm256_mul_pd(iq2,jq1);
178 qq22 = _mm256_mul_pd(iq2,jq2);
180 /* Avoid stupid compiler warnings */
181 jnrA = jnrB = jnrC = jnrD = 0;
190 for(iidx=0;iidx<4*DIM;iidx++)
195 /* Start outer loop over neighborlists */
196 for(iidx=0; iidx<nri; iidx++)
198 /* Load shift vector for this list */
199 i_shift_offset = DIM*shiftidx[iidx];
201 /* Load limits for loop over neighbors */
202 j_index_start = jindex[iidx];
203 j_index_end = jindex[iidx+1];
205 /* Get outer coordinate index */
207 i_coord_offset = DIM*inr;
209 /* Load i particle coords and add shift vector */
210 gmx_mm256_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
211 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
213 fix0 = _mm256_setzero_pd();
214 fiy0 = _mm256_setzero_pd();
215 fiz0 = _mm256_setzero_pd();
216 fix1 = _mm256_setzero_pd();
217 fiy1 = _mm256_setzero_pd();
218 fiz1 = _mm256_setzero_pd();
219 fix2 = _mm256_setzero_pd();
220 fiy2 = _mm256_setzero_pd();
221 fiz2 = _mm256_setzero_pd();
223 /* Reset potential sums */
224 velecsum = _mm256_setzero_pd();
225 vvdwsum = _mm256_setzero_pd();
227 /* Start inner kernel loop */
228 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
231 /* Get j neighbor index, and coordinate index */
236 j_coord_offsetA = DIM*jnrA;
237 j_coord_offsetB = DIM*jnrB;
238 j_coord_offsetC = DIM*jnrC;
239 j_coord_offsetD = DIM*jnrD;
241 /* load j atom coordinates */
242 gmx_mm256_load_3rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
243 x+j_coord_offsetC,x+j_coord_offsetD,
244 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
246 /* Calculate displacement vector */
247 dx00 = _mm256_sub_pd(ix0,jx0);
248 dy00 = _mm256_sub_pd(iy0,jy0);
249 dz00 = _mm256_sub_pd(iz0,jz0);
250 dx01 = _mm256_sub_pd(ix0,jx1);
251 dy01 = _mm256_sub_pd(iy0,jy1);
252 dz01 = _mm256_sub_pd(iz0,jz1);
253 dx02 = _mm256_sub_pd(ix0,jx2);
254 dy02 = _mm256_sub_pd(iy0,jy2);
255 dz02 = _mm256_sub_pd(iz0,jz2);
256 dx10 = _mm256_sub_pd(ix1,jx0);
257 dy10 = _mm256_sub_pd(iy1,jy0);
258 dz10 = _mm256_sub_pd(iz1,jz0);
259 dx11 = _mm256_sub_pd(ix1,jx1);
260 dy11 = _mm256_sub_pd(iy1,jy1);
261 dz11 = _mm256_sub_pd(iz1,jz1);
262 dx12 = _mm256_sub_pd(ix1,jx2);
263 dy12 = _mm256_sub_pd(iy1,jy2);
264 dz12 = _mm256_sub_pd(iz1,jz2);
265 dx20 = _mm256_sub_pd(ix2,jx0);
266 dy20 = _mm256_sub_pd(iy2,jy0);
267 dz20 = _mm256_sub_pd(iz2,jz0);
268 dx21 = _mm256_sub_pd(ix2,jx1);
269 dy21 = _mm256_sub_pd(iy2,jy1);
270 dz21 = _mm256_sub_pd(iz2,jz1);
271 dx22 = _mm256_sub_pd(ix2,jx2);
272 dy22 = _mm256_sub_pd(iy2,jy2);
273 dz22 = _mm256_sub_pd(iz2,jz2);
275 /* Calculate squared distance and things based on it */
276 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
277 rsq01 = gmx_mm256_calc_rsq_pd(dx01,dy01,dz01);
278 rsq02 = gmx_mm256_calc_rsq_pd(dx02,dy02,dz02);
279 rsq10 = gmx_mm256_calc_rsq_pd(dx10,dy10,dz10);
280 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
281 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
282 rsq20 = gmx_mm256_calc_rsq_pd(dx20,dy20,dz20);
283 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
284 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
286 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
287 rinv01 = gmx_mm256_invsqrt_pd(rsq01);
288 rinv02 = gmx_mm256_invsqrt_pd(rsq02);
289 rinv10 = gmx_mm256_invsqrt_pd(rsq10);
290 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
291 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
292 rinv20 = gmx_mm256_invsqrt_pd(rsq20);
293 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
294 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
296 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
297 rinvsq01 = _mm256_mul_pd(rinv01,rinv01);
298 rinvsq02 = _mm256_mul_pd(rinv02,rinv02);
299 rinvsq10 = _mm256_mul_pd(rinv10,rinv10);
300 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
301 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
302 rinvsq20 = _mm256_mul_pd(rinv20,rinv20);
303 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
304 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
306 fjx0 = _mm256_setzero_pd();
307 fjy0 = _mm256_setzero_pd();
308 fjz0 = _mm256_setzero_pd();
309 fjx1 = _mm256_setzero_pd();
310 fjy1 = _mm256_setzero_pd();
311 fjz1 = _mm256_setzero_pd();
312 fjx2 = _mm256_setzero_pd();
313 fjy2 = _mm256_setzero_pd();
314 fjz2 = _mm256_setzero_pd();
316 /**************************
317 * CALCULATE INTERACTIONS *
318 **************************/
320 r00 = _mm256_mul_pd(rsq00,rinv00);
322 /* Calculate table index by multiplying r with table scale and truncate to integer */
323 rt = _mm256_mul_pd(r00,vftabscale);
324 vfitab = _mm256_cvttpd_epi32(rt);
325 vfeps = _mm256_sub_pd(rt,_mm256_round_pd(rt, _MM_FROUND_FLOOR));
326 vfitab = _mm_slli_epi32(vfitab,3);
328 /* EWALD ELECTROSTATICS */
330 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
331 ewrt = _mm256_mul_pd(r00,ewtabscale);
332 ewitab = _mm256_cvttpd_epi32(ewrt);
333 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
334 ewitab = _mm_slli_epi32(ewitab,2);
335 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
336 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
337 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
338 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
339 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
340 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
341 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
342 velec = _mm256_mul_pd(qq00,_mm256_sub_pd(rinv00,velec));
343 felec = _mm256_mul_pd(_mm256_mul_pd(qq00,rinv00),_mm256_sub_pd(rinvsq00,felec));
345 /* CUBIC SPLINE TABLE DISPERSION */
346 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
347 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
348 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
349 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
350 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
351 Heps = _mm256_mul_pd(vfeps,H);
352 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
353 VV = _mm256_add_pd(Y,_mm256_mul_pd(vfeps,Fp));
354 vvdw6 = _mm256_mul_pd(c6_00,VV);
355 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
356 fvdw6 = _mm256_mul_pd(c6_00,FF);
358 /* CUBIC SPLINE TABLE REPULSION */
359 vfitab = _mm_add_epi32(vfitab,ifour);
360 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
361 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
362 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
363 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
364 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
365 Heps = _mm256_mul_pd(vfeps,H);
366 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
367 VV = _mm256_add_pd(Y,_mm256_mul_pd(vfeps,Fp));
368 vvdw12 = _mm256_mul_pd(c12_00,VV);
369 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
370 fvdw12 = _mm256_mul_pd(c12_00,FF);
371 vvdw = _mm256_add_pd(vvdw12,vvdw6);
372 fvdw = _mm256_xor_pd(signbit,_mm256_mul_pd(_mm256_add_pd(fvdw6,fvdw12),_mm256_mul_pd(vftabscale,rinv00)));
374 /* Update potential sum for this i atom from the interaction with this j atom. */
375 velecsum = _mm256_add_pd(velecsum,velec);
376 vvdwsum = _mm256_add_pd(vvdwsum,vvdw);
378 fscal = _mm256_add_pd(felec,fvdw);
380 /* Calculate temporary vectorial force */
381 tx = _mm256_mul_pd(fscal,dx00);
382 ty = _mm256_mul_pd(fscal,dy00);
383 tz = _mm256_mul_pd(fscal,dz00);
385 /* Update vectorial force */
386 fix0 = _mm256_add_pd(fix0,tx);
387 fiy0 = _mm256_add_pd(fiy0,ty);
388 fiz0 = _mm256_add_pd(fiz0,tz);
390 fjx0 = _mm256_add_pd(fjx0,tx);
391 fjy0 = _mm256_add_pd(fjy0,ty);
392 fjz0 = _mm256_add_pd(fjz0,tz);
394 /**************************
395 * CALCULATE INTERACTIONS *
396 **************************/
398 r01 = _mm256_mul_pd(rsq01,rinv01);
400 /* EWALD ELECTROSTATICS */
402 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
403 ewrt = _mm256_mul_pd(r01,ewtabscale);
404 ewitab = _mm256_cvttpd_epi32(ewrt);
405 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
406 ewitab = _mm_slli_epi32(ewitab,2);
407 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
408 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
409 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
410 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
411 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
412 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
413 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
414 velec = _mm256_mul_pd(qq01,_mm256_sub_pd(rinv01,velec));
415 felec = _mm256_mul_pd(_mm256_mul_pd(qq01,rinv01),_mm256_sub_pd(rinvsq01,felec));
417 /* Update potential sum for this i atom from the interaction with this j atom. */
418 velecsum = _mm256_add_pd(velecsum,velec);
422 /* Calculate temporary vectorial force */
423 tx = _mm256_mul_pd(fscal,dx01);
424 ty = _mm256_mul_pd(fscal,dy01);
425 tz = _mm256_mul_pd(fscal,dz01);
427 /* Update vectorial force */
428 fix0 = _mm256_add_pd(fix0,tx);
429 fiy0 = _mm256_add_pd(fiy0,ty);
430 fiz0 = _mm256_add_pd(fiz0,tz);
432 fjx1 = _mm256_add_pd(fjx1,tx);
433 fjy1 = _mm256_add_pd(fjy1,ty);
434 fjz1 = _mm256_add_pd(fjz1,tz);
436 /**************************
437 * CALCULATE INTERACTIONS *
438 **************************/
440 r02 = _mm256_mul_pd(rsq02,rinv02);
442 /* EWALD ELECTROSTATICS */
444 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
445 ewrt = _mm256_mul_pd(r02,ewtabscale);
446 ewitab = _mm256_cvttpd_epi32(ewrt);
447 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
448 ewitab = _mm_slli_epi32(ewitab,2);
449 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
450 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
451 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
452 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
453 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
454 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
455 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
456 velec = _mm256_mul_pd(qq02,_mm256_sub_pd(rinv02,velec));
457 felec = _mm256_mul_pd(_mm256_mul_pd(qq02,rinv02),_mm256_sub_pd(rinvsq02,felec));
459 /* Update potential sum for this i atom from the interaction with this j atom. */
460 velecsum = _mm256_add_pd(velecsum,velec);
464 /* Calculate temporary vectorial force */
465 tx = _mm256_mul_pd(fscal,dx02);
466 ty = _mm256_mul_pd(fscal,dy02);
467 tz = _mm256_mul_pd(fscal,dz02);
469 /* Update vectorial force */
470 fix0 = _mm256_add_pd(fix0,tx);
471 fiy0 = _mm256_add_pd(fiy0,ty);
472 fiz0 = _mm256_add_pd(fiz0,tz);
474 fjx2 = _mm256_add_pd(fjx2,tx);
475 fjy2 = _mm256_add_pd(fjy2,ty);
476 fjz2 = _mm256_add_pd(fjz2,tz);
478 /**************************
479 * CALCULATE INTERACTIONS *
480 **************************/
482 r10 = _mm256_mul_pd(rsq10,rinv10);
484 /* EWALD ELECTROSTATICS */
486 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
487 ewrt = _mm256_mul_pd(r10,ewtabscale);
488 ewitab = _mm256_cvttpd_epi32(ewrt);
489 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
490 ewitab = _mm_slli_epi32(ewitab,2);
491 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
492 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
493 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
494 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
495 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
496 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
497 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
498 velec = _mm256_mul_pd(qq10,_mm256_sub_pd(rinv10,velec));
499 felec = _mm256_mul_pd(_mm256_mul_pd(qq10,rinv10),_mm256_sub_pd(rinvsq10,felec));
501 /* Update potential sum for this i atom from the interaction with this j atom. */
502 velecsum = _mm256_add_pd(velecsum,velec);
506 /* Calculate temporary vectorial force */
507 tx = _mm256_mul_pd(fscal,dx10);
508 ty = _mm256_mul_pd(fscal,dy10);
509 tz = _mm256_mul_pd(fscal,dz10);
511 /* Update vectorial force */
512 fix1 = _mm256_add_pd(fix1,tx);
513 fiy1 = _mm256_add_pd(fiy1,ty);
514 fiz1 = _mm256_add_pd(fiz1,tz);
516 fjx0 = _mm256_add_pd(fjx0,tx);
517 fjy0 = _mm256_add_pd(fjy0,ty);
518 fjz0 = _mm256_add_pd(fjz0,tz);
520 /**************************
521 * CALCULATE INTERACTIONS *
522 **************************/
524 r11 = _mm256_mul_pd(rsq11,rinv11);
526 /* EWALD ELECTROSTATICS */
528 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
529 ewrt = _mm256_mul_pd(r11,ewtabscale);
530 ewitab = _mm256_cvttpd_epi32(ewrt);
531 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
532 ewitab = _mm_slli_epi32(ewitab,2);
533 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
534 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
535 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
536 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
537 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
538 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
539 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
540 velec = _mm256_mul_pd(qq11,_mm256_sub_pd(rinv11,velec));
541 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
543 /* Update potential sum for this i atom from the interaction with this j atom. */
544 velecsum = _mm256_add_pd(velecsum,velec);
548 /* Calculate temporary vectorial force */
549 tx = _mm256_mul_pd(fscal,dx11);
550 ty = _mm256_mul_pd(fscal,dy11);
551 tz = _mm256_mul_pd(fscal,dz11);
553 /* Update vectorial force */
554 fix1 = _mm256_add_pd(fix1,tx);
555 fiy1 = _mm256_add_pd(fiy1,ty);
556 fiz1 = _mm256_add_pd(fiz1,tz);
558 fjx1 = _mm256_add_pd(fjx1,tx);
559 fjy1 = _mm256_add_pd(fjy1,ty);
560 fjz1 = _mm256_add_pd(fjz1,tz);
562 /**************************
563 * CALCULATE INTERACTIONS *
564 **************************/
566 r12 = _mm256_mul_pd(rsq12,rinv12);
568 /* EWALD ELECTROSTATICS */
570 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
571 ewrt = _mm256_mul_pd(r12,ewtabscale);
572 ewitab = _mm256_cvttpd_epi32(ewrt);
573 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
574 ewitab = _mm_slli_epi32(ewitab,2);
575 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
576 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
577 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
578 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
579 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
580 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
581 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
582 velec = _mm256_mul_pd(qq12,_mm256_sub_pd(rinv12,velec));
583 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
585 /* Update potential sum for this i atom from the interaction with this j atom. */
586 velecsum = _mm256_add_pd(velecsum,velec);
590 /* Calculate temporary vectorial force */
591 tx = _mm256_mul_pd(fscal,dx12);
592 ty = _mm256_mul_pd(fscal,dy12);
593 tz = _mm256_mul_pd(fscal,dz12);
595 /* Update vectorial force */
596 fix1 = _mm256_add_pd(fix1,tx);
597 fiy1 = _mm256_add_pd(fiy1,ty);
598 fiz1 = _mm256_add_pd(fiz1,tz);
600 fjx2 = _mm256_add_pd(fjx2,tx);
601 fjy2 = _mm256_add_pd(fjy2,ty);
602 fjz2 = _mm256_add_pd(fjz2,tz);
604 /**************************
605 * CALCULATE INTERACTIONS *
606 **************************/
608 r20 = _mm256_mul_pd(rsq20,rinv20);
610 /* EWALD ELECTROSTATICS */
612 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
613 ewrt = _mm256_mul_pd(r20,ewtabscale);
614 ewitab = _mm256_cvttpd_epi32(ewrt);
615 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
616 ewitab = _mm_slli_epi32(ewitab,2);
617 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
618 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
619 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
620 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
621 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
622 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
623 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
624 velec = _mm256_mul_pd(qq20,_mm256_sub_pd(rinv20,velec));
625 felec = _mm256_mul_pd(_mm256_mul_pd(qq20,rinv20),_mm256_sub_pd(rinvsq20,felec));
627 /* Update potential sum for this i atom from the interaction with this j atom. */
628 velecsum = _mm256_add_pd(velecsum,velec);
632 /* Calculate temporary vectorial force */
633 tx = _mm256_mul_pd(fscal,dx20);
634 ty = _mm256_mul_pd(fscal,dy20);
635 tz = _mm256_mul_pd(fscal,dz20);
637 /* Update vectorial force */
638 fix2 = _mm256_add_pd(fix2,tx);
639 fiy2 = _mm256_add_pd(fiy2,ty);
640 fiz2 = _mm256_add_pd(fiz2,tz);
642 fjx0 = _mm256_add_pd(fjx0,tx);
643 fjy0 = _mm256_add_pd(fjy0,ty);
644 fjz0 = _mm256_add_pd(fjz0,tz);
646 /**************************
647 * CALCULATE INTERACTIONS *
648 **************************/
650 r21 = _mm256_mul_pd(rsq21,rinv21);
652 /* EWALD ELECTROSTATICS */
654 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
655 ewrt = _mm256_mul_pd(r21,ewtabscale);
656 ewitab = _mm256_cvttpd_epi32(ewrt);
657 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
658 ewitab = _mm_slli_epi32(ewitab,2);
659 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
660 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
661 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
662 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
663 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
664 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
665 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
666 velec = _mm256_mul_pd(qq21,_mm256_sub_pd(rinv21,velec));
667 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
669 /* Update potential sum for this i atom from the interaction with this j atom. */
670 velecsum = _mm256_add_pd(velecsum,velec);
674 /* Calculate temporary vectorial force */
675 tx = _mm256_mul_pd(fscal,dx21);
676 ty = _mm256_mul_pd(fscal,dy21);
677 tz = _mm256_mul_pd(fscal,dz21);
679 /* Update vectorial force */
680 fix2 = _mm256_add_pd(fix2,tx);
681 fiy2 = _mm256_add_pd(fiy2,ty);
682 fiz2 = _mm256_add_pd(fiz2,tz);
684 fjx1 = _mm256_add_pd(fjx1,tx);
685 fjy1 = _mm256_add_pd(fjy1,ty);
686 fjz1 = _mm256_add_pd(fjz1,tz);
688 /**************************
689 * CALCULATE INTERACTIONS *
690 **************************/
692 r22 = _mm256_mul_pd(rsq22,rinv22);
694 /* EWALD ELECTROSTATICS */
696 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
697 ewrt = _mm256_mul_pd(r22,ewtabscale);
698 ewitab = _mm256_cvttpd_epi32(ewrt);
699 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
700 ewitab = _mm_slli_epi32(ewitab,2);
701 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
702 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
703 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
704 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
705 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
706 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
707 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
708 velec = _mm256_mul_pd(qq22,_mm256_sub_pd(rinv22,velec));
709 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
711 /* Update potential sum for this i atom from the interaction with this j atom. */
712 velecsum = _mm256_add_pd(velecsum,velec);
716 /* Calculate temporary vectorial force */
717 tx = _mm256_mul_pd(fscal,dx22);
718 ty = _mm256_mul_pd(fscal,dy22);
719 tz = _mm256_mul_pd(fscal,dz22);
721 /* Update vectorial force */
722 fix2 = _mm256_add_pd(fix2,tx);
723 fiy2 = _mm256_add_pd(fiy2,ty);
724 fiz2 = _mm256_add_pd(fiz2,tz);
726 fjx2 = _mm256_add_pd(fjx2,tx);
727 fjy2 = _mm256_add_pd(fjy2,ty);
728 fjz2 = _mm256_add_pd(fjz2,tz);
730 fjptrA = f+j_coord_offsetA;
731 fjptrB = f+j_coord_offsetB;
732 fjptrC = f+j_coord_offsetC;
733 fjptrD = f+j_coord_offsetD;
735 gmx_mm256_decrement_3rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
736 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
738 /* Inner loop uses 403 flops */
744 /* Get j neighbor index, and coordinate index */
745 jnrlistA = jjnr[jidx];
746 jnrlistB = jjnr[jidx+1];
747 jnrlistC = jjnr[jidx+2];
748 jnrlistD = jjnr[jidx+3];
749 /* Sign of each element will be negative for non-real atoms.
750 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
751 * so use it as val = _mm_andnot_pd(mask,val) to clear dummy entries.
753 tmpmask0 = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
755 tmpmask1 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(3,3,2,2));
756 tmpmask0 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(1,1,0,0));
757 dummy_mask = _mm256_castps_pd(gmx_mm256_set_m128(tmpmask1,tmpmask0));
759 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
760 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
761 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
762 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
763 j_coord_offsetA = DIM*jnrA;
764 j_coord_offsetB = DIM*jnrB;
765 j_coord_offsetC = DIM*jnrC;
766 j_coord_offsetD = DIM*jnrD;
768 /* load j atom coordinates */
769 gmx_mm256_load_3rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
770 x+j_coord_offsetC,x+j_coord_offsetD,
771 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
773 /* Calculate displacement vector */
774 dx00 = _mm256_sub_pd(ix0,jx0);
775 dy00 = _mm256_sub_pd(iy0,jy0);
776 dz00 = _mm256_sub_pd(iz0,jz0);
777 dx01 = _mm256_sub_pd(ix0,jx1);
778 dy01 = _mm256_sub_pd(iy0,jy1);
779 dz01 = _mm256_sub_pd(iz0,jz1);
780 dx02 = _mm256_sub_pd(ix0,jx2);
781 dy02 = _mm256_sub_pd(iy0,jy2);
782 dz02 = _mm256_sub_pd(iz0,jz2);
783 dx10 = _mm256_sub_pd(ix1,jx0);
784 dy10 = _mm256_sub_pd(iy1,jy0);
785 dz10 = _mm256_sub_pd(iz1,jz0);
786 dx11 = _mm256_sub_pd(ix1,jx1);
787 dy11 = _mm256_sub_pd(iy1,jy1);
788 dz11 = _mm256_sub_pd(iz1,jz1);
789 dx12 = _mm256_sub_pd(ix1,jx2);
790 dy12 = _mm256_sub_pd(iy1,jy2);
791 dz12 = _mm256_sub_pd(iz1,jz2);
792 dx20 = _mm256_sub_pd(ix2,jx0);
793 dy20 = _mm256_sub_pd(iy2,jy0);
794 dz20 = _mm256_sub_pd(iz2,jz0);
795 dx21 = _mm256_sub_pd(ix2,jx1);
796 dy21 = _mm256_sub_pd(iy2,jy1);
797 dz21 = _mm256_sub_pd(iz2,jz1);
798 dx22 = _mm256_sub_pd(ix2,jx2);
799 dy22 = _mm256_sub_pd(iy2,jy2);
800 dz22 = _mm256_sub_pd(iz2,jz2);
802 /* Calculate squared distance and things based on it */
803 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
804 rsq01 = gmx_mm256_calc_rsq_pd(dx01,dy01,dz01);
805 rsq02 = gmx_mm256_calc_rsq_pd(dx02,dy02,dz02);
806 rsq10 = gmx_mm256_calc_rsq_pd(dx10,dy10,dz10);
807 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
808 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
809 rsq20 = gmx_mm256_calc_rsq_pd(dx20,dy20,dz20);
810 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
811 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
813 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
814 rinv01 = gmx_mm256_invsqrt_pd(rsq01);
815 rinv02 = gmx_mm256_invsqrt_pd(rsq02);
816 rinv10 = gmx_mm256_invsqrt_pd(rsq10);
817 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
818 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
819 rinv20 = gmx_mm256_invsqrt_pd(rsq20);
820 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
821 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
823 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
824 rinvsq01 = _mm256_mul_pd(rinv01,rinv01);
825 rinvsq02 = _mm256_mul_pd(rinv02,rinv02);
826 rinvsq10 = _mm256_mul_pd(rinv10,rinv10);
827 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
828 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
829 rinvsq20 = _mm256_mul_pd(rinv20,rinv20);
830 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
831 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
833 fjx0 = _mm256_setzero_pd();
834 fjy0 = _mm256_setzero_pd();
835 fjz0 = _mm256_setzero_pd();
836 fjx1 = _mm256_setzero_pd();
837 fjy1 = _mm256_setzero_pd();
838 fjz1 = _mm256_setzero_pd();
839 fjx2 = _mm256_setzero_pd();
840 fjy2 = _mm256_setzero_pd();
841 fjz2 = _mm256_setzero_pd();
843 /**************************
844 * CALCULATE INTERACTIONS *
845 **************************/
847 r00 = _mm256_mul_pd(rsq00,rinv00);
848 r00 = _mm256_andnot_pd(dummy_mask,r00);
850 /* Calculate table index by multiplying r with table scale and truncate to integer */
851 rt = _mm256_mul_pd(r00,vftabscale);
852 vfitab = _mm256_cvttpd_epi32(rt);
853 vfeps = _mm256_sub_pd(rt,_mm256_round_pd(rt, _MM_FROUND_FLOOR));
854 vfitab = _mm_slli_epi32(vfitab,3);
856 /* EWALD ELECTROSTATICS */
858 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
859 ewrt = _mm256_mul_pd(r00,ewtabscale);
860 ewitab = _mm256_cvttpd_epi32(ewrt);
861 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
862 ewitab = _mm_slli_epi32(ewitab,2);
863 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
864 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
865 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
866 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
867 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
868 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
869 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
870 velec = _mm256_mul_pd(qq00,_mm256_sub_pd(rinv00,velec));
871 felec = _mm256_mul_pd(_mm256_mul_pd(qq00,rinv00),_mm256_sub_pd(rinvsq00,felec));
873 /* CUBIC SPLINE TABLE DISPERSION */
874 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
875 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
876 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
877 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
878 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
879 Heps = _mm256_mul_pd(vfeps,H);
880 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
881 VV = _mm256_add_pd(Y,_mm256_mul_pd(vfeps,Fp));
882 vvdw6 = _mm256_mul_pd(c6_00,VV);
883 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
884 fvdw6 = _mm256_mul_pd(c6_00,FF);
886 /* CUBIC SPLINE TABLE REPULSION */
887 vfitab = _mm_add_epi32(vfitab,ifour);
888 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
889 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
890 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
891 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
892 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
893 Heps = _mm256_mul_pd(vfeps,H);
894 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
895 VV = _mm256_add_pd(Y,_mm256_mul_pd(vfeps,Fp));
896 vvdw12 = _mm256_mul_pd(c12_00,VV);
897 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
898 fvdw12 = _mm256_mul_pd(c12_00,FF);
899 vvdw = _mm256_add_pd(vvdw12,vvdw6);
900 fvdw = _mm256_xor_pd(signbit,_mm256_mul_pd(_mm256_add_pd(fvdw6,fvdw12),_mm256_mul_pd(vftabscale,rinv00)));
902 /* Update potential sum for this i atom from the interaction with this j atom. */
903 velec = _mm256_andnot_pd(dummy_mask,velec);
904 velecsum = _mm256_add_pd(velecsum,velec);
905 vvdw = _mm256_andnot_pd(dummy_mask,vvdw);
906 vvdwsum = _mm256_add_pd(vvdwsum,vvdw);
908 fscal = _mm256_add_pd(felec,fvdw);
910 fscal = _mm256_andnot_pd(dummy_mask,fscal);
912 /* Calculate temporary vectorial force */
913 tx = _mm256_mul_pd(fscal,dx00);
914 ty = _mm256_mul_pd(fscal,dy00);
915 tz = _mm256_mul_pd(fscal,dz00);
917 /* Update vectorial force */
918 fix0 = _mm256_add_pd(fix0,tx);
919 fiy0 = _mm256_add_pd(fiy0,ty);
920 fiz0 = _mm256_add_pd(fiz0,tz);
922 fjx0 = _mm256_add_pd(fjx0,tx);
923 fjy0 = _mm256_add_pd(fjy0,ty);
924 fjz0 = _mm256_add_pd(fjz0,tz);
926 /**************************
927 * CALCULATE INTERACTIONS *
928 **************************/
930 r01 = _mm256_mul_pd(rsq01,rinv01);
931 r01 = _mm256_andnot_pd(dummy_mask,r01);
933 /* EWALD ELECTROSTATICS */
935 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
936 ewrt = _mm256_mul_pd(r01,ewtabscale);
937 ewitab = _mm256_cvttpd_epi32(ewrt);
938 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
939 ewitab = _mm_slli_epi32(ewitab,2);
940 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
941 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
942 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
943 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
944 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
945 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
946 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
947 velec = _mm256_mul_pd(qq01,_mm256_sub_pd(rinv01,velec));
948 felec = _mm256_mul_pd(_mm256_mul_pd(qq01,rinv01),_mm256_sub_pd(rinvsq01,felec));
950 /* Update potential sum for this i atom from the interaction with this j atom. */
951 velec = _mm256_andnot_pd(dummy_mask,velec);
952 velecsum = _mm256_add_pd(velecsum,velec);
956 fscal = _mm256_andnot_pd(dummy_mask,fscal);
958 /* Calculate temporary vectorial force */
959 tx = _mm256_mul_pd(fscal,dx01);
960 ty = _mm256_mul_pd(fscal,dy01);
961 tz = _mm256_mul_pd(fscal,dz01);
963 /* Update vectorial force */
964 fix0 = _mm256_add_pd(fix0,tx);
965 fiy0 = _mm256_add_pd(fiy0,ty);
966 fiz0 = _mm256_add_pd(fiz0,tz);
968 fjx1 = _mm256_add_pd(fjx1,tx);
969 fjy1 = _mm256_add_pd(fjy1,ty);
970 fjz1 = _mm256_add_pd(fjz1,tz);
972 /**************************
973 * CALCULATE INTERACTIONS *
974 **************************/
976 r02 = _mm256_mul_pd(rsq02,rinv02);
977 r02 = _mm256_andnot_pd(dummy_mask,r02);
979 /* EWALD ELECTROSTATICS */
981 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
982 ewrt = _mm256_mul_pd(r02,ewtabscale);
983 ewitab = _mm256_cvttpd_epi32(ewrt);
984 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
985 ewitab = _mm_slli_epi32(ewitab,2);
986 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
987 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
988 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
989 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
990 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
991 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
992 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
993 velec = _mm256_mul_pd(qq02,_mm256_sub_pd(rinv02,velec));
994 felec = _mm256_mul_pd(_mm256_mul_pd(qq02,rinv02),_mm256_sub_pd(rinvsq02,felec));
996 /* Update potential sum for this i atom from the interaction with this j atom. */
997 velec = _mm256_andnot_pd(dummy_mask,velec);
998 velecsum = _mm256_add_pd(velecsum,velec);
1002 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1004 /* Calculate temporary vectorial force */
1005 tx = _mm256_mul_pd(fscal,dx02);
1006 ty = _mm256_mul_pd(fscal,dy02);
1007 tz = _mm256_mul_pd(fscal,dz02);
1009 /* Update vectorial force */
1010 fix0 = _mm256_add_pd(fix0,tx);
1011 fiy0 = _mm256_add_pd(fiy0,ty);
1012 fiz0 = _mm256_add_pd(fiz0,tz);
1014 fjx2 = _mm256_add_pd(fjx2,tx);
1015 fjy2 = _mm256_add_pd(fjy2,ty);
1016 fjz2 = _mm256_add_pd(fjz2,tz);
1018 /**************************
1019 * CALCULATE INTERACTIONS *
1020 **************************/
1022 r10 = _mm256_mul_pd(rsq10,rinv10);
1023 r10 = _mm256_andnot_pd(dummy_mask,r10);
1025 /* EWALD ELECTROSTATICS */
1027 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1028 ewrt = _mm256_mul_pd(r10,ewtabscale);
1029 ewitab = _mm256_cvttpd_epi32(ewrt);
1030 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1031 ewitab = _mm_slli_epi32(ewitab,2);
1032 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1033 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1034 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1035 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1036 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1037 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1038 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1039 velec = _mm256_mul_pd(qq10,_mm256_sub_pd(rinv10,velec));
1040 felec = _mm256_mul_pd(_mm256_mul_pd(qq10,rinv10),_mm256_sub_pd(rinvsq10,felec));
1042 /* Update potential sum for this i atom from the interaction with this j atom. */
1043 velec = _mm256_andnot_pd(dummy_mask,velec);
1044 velecsum = _mm256_add_pd(velecsum,velec);
1048 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1050 /* Calculate temporary vectorial force */
1051 tx = _mm256_mul_pd(fscal,dx10);
1052 ty = _mm256_mul_pd(fscal,dy10);
1053 tz = _mm256_mul_pd(fscal,dz10);
1055 /* Update vectorial force */
1056 fix1 = _mm256_add_pd(fix1,tx);
1057 fiy1 = _mm256_add_pd(fiy1,ty);
1058 fiz1 = _mm256_add_pd(fiz1,tz);
1060 fjx0 = _mm256_add_pd(fjx0,tx);
1061 fjy0 = _mm256_add_pd(fjy0,ty);
1062 fjz0 = _mm256_add_pd(fjz0,tz);
1064 /**************************
1065 * CALCULATE INTERACTIONS *
1066 **************************/
1068 r11 = _mm256_mul_pd(rsq11,rinv11);
1069 r11 = _mm256_andnot_pd(dummy_mask,r11);
1071 /* EWALD ELECTROSTATICS */
1073 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1074 ewrt = _mm256_mul_pd(r11,ewtabscale);
1075 ewitab = _mm256_cvttpd_epi32(ewrt);
1076 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1077 ewitab = _mm_slli_epi32(ewitab,2);
1078 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1079 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1080 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1081 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1082 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1083 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1084 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1085 velec = _mm256_mul_pd(qq11,_mm256_sub_pd(rinv11,velec));
1086 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
1088 /* Update potential sum for this i atom from the interaction with this j atom. */
1089 velec = _mm256_andnot_pd(dummy_mask,velec);
1090 velecsum = _mm256_add_pd(velecsum,velec);
1094 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1096 /* Calculate temporary vectorial force */
1097 tx = _mm256_mul_pd(fscal,dx11);
1098 ty = _mm256_mul_pd(fscal,dy11);
1099 tz = _mm256_mul_pd(fscal,dz11);
1101 /* Update vectorial force */
1102 fix1 = _mm256_add_pd(fix1,tx);
1103 fiy1 = _mm256_add_pd(fiy1,ty);
1104 fiz1 = _mm256_add_pd(fiz1,tz);
1106 fjx1 = _mm256_add_pd(fjx1,tx);
1107 fjy1 = _mm256_add_pd(fjy1,ty);
1108 fjz1 = _mm256_add_pd(fjz1,tz);
1110 /**************************
1111 * CALCULATE INTERACTIONS *
1112 **************************/
1114 r12 = _mm256_mul_pd(rsq12,rinv12);
1115 r12 = _mm256_andnot_pd(dummy_mask,r12);
1117 /* EWALD ELECTROSTATICS */
1119 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1120 ewrt = _mm256_mul_pd(r12,ewtabscale);
1121 ewitab = _mm256_cvttpd_epi32(ewrt);
1122 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1123 ewitab = _mm_slli_epi32(ewitab,2);
1124 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1125 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1126 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1127 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1128 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1129 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1130 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1131 velec = _mm256_mul_pd(qq12,_mm256_sub_pd(rinv12,velec));
1132 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
1134 /* Update potential sum for this i atom from the interaction with this j atom. */
1135 velec = _mm256_andnot_pd(dummy_mask,velec);
1136 velecsum = _mm256_add_pd(velecsum,velec);
1140 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1142 /* Calculate temporary vectorial force */
1143 tx = _mm256_mul_pd(fscal,dx12);
1144 ty = _mm256_mul_pd(fscal,dy12);
1145 tz = _mm256_mul_pd(fscal,dz12);
1147 /* Update vectorial force */
1148 fix1 = _mm256_add_pd(fix1,tx);
1149 fiy1 = _mm256_add_pd(fiy1,ty);
1150 fiz1 = _mm256_add_pd(fiz1,tz);
1152 fjx2 = _mm256_add_pd(fjx2,tx);
1153 fjy2 = _mm256_add_pd(fjy2,ty);
1154 fjz2 = _mm256_add_pd(fjz2,tz);
1156 /**************************
1157 * CALCULATE INTERACTIONS *
1158 **************************/
1160 r20 = _mm256_mul_pd(rsq20,rinv20);
1161 r20 = _mm256_andnot_pd(dummy_mask,r20);
1163 /* EWALD ELECTROSTATICS */
1165 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1166 ewrt = _mm256_mul_pd(r20,ewtabscale);
1167 ewitab = _mm256_cvttpd_epi32(ewrt);
1168 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1169 ewitab = _mm_slli_epi32(ewitab,2);
1170 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1171 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1172 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1173 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1174 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1175 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1176 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1177 velec = _mm256_mul_pd(qq20,_mm256_sub_pd(rinv20,velec));
1178 felec = _mm256_mul_pd(_mm256_mul_pd(qq20,rinv20),_mm256_sub_pd(rinvsq20,felec));
1180 /* Update potential sum for this i atom from the interaction with this j atom. */
1181 velec = _mm256_andnot_pd(dummy_mask,velec);
1182 velecsum = _mm256_add_pd(velecsum,velec);
1186 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1188 /* Calculate temporary vectorial force */
1189 tx = _mm256_mul_pd(fscal,dx20);
1190 ty = _mm256_mul_pd(fscal,dy20);
1191 tz = _mm256_mul_pd(fscal,dz20);
1193 /* Update vectorial force */
1194 fix2 = _mm256_add_pd(fix2,tx);
1195 fiy2 = _mm256_add_pd(fiy2,ty);
1196 fiz2 = _mm256_add_pd(fiz2,tz);
1198 fjx0 = _mm256_add_pd(fjx0,tx);
1199 fjy0 = _mm256_add_pd(fjy0,ty);
1200 fjz0 = _mm256_add_pd(fjz0,tz);
1202 /**************************
1203 * CALCULATE INTERACTIONS *
1204 **************************/
1206 r21 = _mm256_mul_pd(rsq21,rinv21);
1207 r21 = _mm256_andnot_pd(dummy_mask,r21);
1209 /* EWALD ELECTROSTATICS */
1211 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1212 ewrt = _mm256_mul_pd(r21,ewtabscale);
1213 ewitab = _mm256_cvttpd_epi32(ewrt);
1214 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1215 ewitab = _mm_slli_epi32(ewitab,2);
1216 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1217 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1218 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1219 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1220 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1221 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1222 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1223 velec = _mm256_mul_pd(qq21,_mm256_sub_pd(rinv21,velec));
1224 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
1226 /* Update potential sum for this i atom from the interaction with this j atom. */
1227 velec = _mm256_andnot_pd(dummy_mask,velec);
1228 velecsum = _mm256_add_pd(velecsum,velec);
1232 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1234 /* Calculate temporary vectorial force */
1235 tx = _mm256_mul_pd(fscal,dx21);
1236 ty = _mm256_mul_pd(fscal,dy21);
1237 tz = _mm256_mul_pd(fscal,dz21);
1239 /* Update vectorial force */
1240 fix2 = _mm256_add_pd(fix2,tx);
1241 fiy2 = _mm256_add_pd(fiy2,ty);
1242 fiz2 = _mm256_add_pd(fiz2,tz);
1244 fjx1 = _mm256_add_pd(fjx1,tx);
1245 fjy1 = _mm256_add_pd(fjy1,ty);
1246 fjz1 = _mm256_add_pd(fjz1,tz);
1248 /**************************
1249 * CALCULATE INTERACTIONS *
1250 **************************/
1252 r22 = _mm256_mul_pd(rsq22,rinv22);
1253 r22 = _mm256_andnot_pd(dummy_mask,r22);
1255 /* EWALD ELECTROSTATICS */
1257 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1258 ewrt = _mm256_mul_pd(r22,ewtabscale);
1259 ewitab = _mm256_cvttpd_epi32(ewrt);
1260 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1261 ewitab = _mm_slli_epi32(ewitab,2);
1262 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1263 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1264 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1265 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1266 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1267 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1268 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1269 velec = _mm256_mul_pd(qq22,_mm256_sub_pd(rinv22,velec));
1270 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
1272 /* Update potential sum for this i atom from the interaction with this j atom. */
1273 velec = _mm256_andnot_pd(dummy_mask,velec);
1274 velecsum = _mm256_add_pd(velecsum,velec);
1278 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1280 /* Calculate temporary vectorial force */
1281 tx = _mm256_mul_pd(fscal,dx22);
1282 ty = _mm256_mul_pd(fscal,dy22);
1283 tz = _mm256_mul_pd(fscal,dz22);
1285 /* Update vectorial force */
1286 fix2 = _mm256_add_pd(fix2,tx);
1287 fiy2 = _mm256_add_pd(fiy2,ty);
1288 fiz2 = _mm256_add_pd(fiz2,tz);
1290 fjx2 = _mm256_add_pd(fjx2,tx);
1291 fjy2 = _mm256_add_pd(fjy2,ty);
1292 fjz2 = _mm256_add_pd(fjz2,tz);
1294 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1295 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1296 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1297 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1299 gmx_mm256_decrement_3rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
1300 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1302 /* Inner loop uses 412 flops */
1305 /* End of innermost loop */
1307 gmx_mm256_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1308 f+i_coord_offset,fshift+i_shift_offset);
1311 /* Update potential energies */
1312 gmx_mm256_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1313 gmx_mm256_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1315 /* Increment number of inner iterations */
1316 inneriter += j_index_end - j_index_start;
1318 /* Outer loop uses 20 flops */
1321 /* Increment number of outer iterations */
1324 /* Update outer/inner flops */
1326 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*412);
1329 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwCSTab_GeomW3W3_F_avx_256_double
1330 * Electrostatics interaction: Ewald
1331 * VdW interaction: CubicSplineTable
1332 * Geometry: Water3-Water3
1333 * Calculate force/pot: Force
1336 nb_kernel_ElecEw_VdwCSTab_GeomW3W3_F_avx_256_double
1337 (t_nblist * gmx_restrict nlist,
1338 rvec * gmx_restrict xx,
1339 rvec * gmx_restrict ff,
1340 t_forcerec * gmx_restrict fr,
1341 t_mdatoms * gmx_restrict mdatoms,
1342 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1343 t_nrnb * gmx_restrict nrnb)
1345 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1346 * just 0 for non-waters.
1347 * Suffixes A,B,C,D refer to j loop unrolling done with AVX, e.g. for the four different
1348 * jnr indices corresponding to data put in the four positions in the SIMD register.
1350 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1351 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1352 int jnrA,jnrB,jnrC,jnrD;
1353 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1354 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1355 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1356 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1357 real rcutoff_scalar;
1358 real *shiftvec,*fshift,*x,*f;
1359 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
1360 real scratch[4*DIM];
1361 __m256d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1362 real * vdwioffsetptr0;
1363 __m256d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1364 real * vdwioffsetptr1;
1365 __m256d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1366 real * vdwioffsetptr2;
1367 __m256d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1368 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1369 __m256d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1370 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1371 __m256d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1372 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1373 __m256d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1374 __m256d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1375 __m256d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1376 __m256d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1377 __m256d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1378 __m256d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1379 __m256d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1380 __m256d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1381 __m256d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1382 __m256d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1383 __m256d velec,felec,velecsum,facel,crf,krf,krf2;
1386 __m256d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1389 __m256d one_sixth = _mm256_set1_pd(1.0/6.0);
1390 __m256d one_twelfth = _mm256_set1_pd(1.0/12.0);
1392 __m128i ifour = _mm_set1_epi32(4);
1393 __m256d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
1396 __m256d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1397 __m256d beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
1399 __m256d dummy_mask,cutoff_mask;
1400 __m128 tmpmask0,tmpmask1;
1401 __m256d signbit = _mm256_castsi256_pd( _mm256_set1_epi32(0x80000000) );
1402 __m256d one = _mm256_set1_pd(1.0);
1403 __m256d two = _mm256_set1_pd(2.0);
1409 jindex = nlist->jindex;
1411 shiftidx = nlist->shift;
1413 shiftvec = fr->shift_vec[0];
1414 fshift = fr->fshift[0];
1415 facel = _mm256_set1_pd(fr->epsfac);
1416 charge = mdatoms->chargeA;
1417 nvdwtype = fr->ntype;
1418 vdwparam = fr->nbfp;
1419 vdwtype = mdatoms->typeA;
1421 vftab = kernel_data->table_vdw->data;
1422 vftabscale = _mm256_set1_pd(kernel_data->table_vdw->scale);
1424 sh_ewald = _mm256_set1_pd(fr->ic->sh_ewald);
1425 beta = _mm256_set1_pd(fr->ic->ewaldcoeff_q);
1426 beta2 = _mm256_mul_pd(beta,beta);
1427 beta3 = _mm256_mul_pd(beta,beta2);
1429 ewtab = fr->ic->tabq_coul_F;
1430 ewtabscale = _mm256_set1_pd(fr->ic->tabq_scale);
1431 ewtabhalfspace = _mm256_set1_pd(0.5/fr->ic->tabq_scale);
1433 /* Setup water-specific parameters */
1434 inr = nlist->iinr[0];
1435 iq0 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+0]));
1436 iq1 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+1]));
1437 iq2 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+2]));
1438 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
1440 jq0 = _mm256_set1_pd(charge[inr+0]);
1441 jq1 = _mm256_set1_pd(charge[inr+1]);
1442 jq2 = _mm256_set1_pd(charge[inr+2]);
1443 vdwjidx0A = 2*vdwtype[inr+0];
1444 qq00 = _mm256_mul_pd(iq0,jq0);
1445 c6_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A]);
1446 c12_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A+1]);
1447 qq01 = _mm256_mul_pd(iq0,jq1);
1448 qq02 = _mm256_mul_pd(iq0,jq2);
1449 qq10 = _mm256_mul_pd(iq1,jq0);
1450 qq11 = _mm256_mul_pd(iq1,jq1);
1451 qq12 = _mm256_mul_pd(iq1,jq2);
1452 qq20 = _mm256_mul_pd(iq2,jq0);
1453 qq21 = _mm256_mul_pd(iq2,jq1);
1454 qq22 = _mm256_mul_pd(iq2,jq2);
1456 /* Avoid stupid compiler warnings */
1457 jnrA = jnrB = jnrC = jnrD = 0;
1458 j_coord_offsetA = 0;
1459 j_coord_offsetB = 0;
1460 j_coord_offsetC = 0;
1461 j_coord_offsetD = 0;
1466 for(iidx=0;iidx<4*DIM;iidx++)
1468 scratch[iidx] = 0.0;
1471 /* Start outer loop over neighborlists */
1472 for(iidx=0; iidx<nri; iidx++)
1474 /* Load shift vector for this list */
1475 i_shift_offset = DIM*shiftidx[iidx];
1477 /* Load limits for loop over neighbors */
1478 j_index_start = jindex[iidx];
1479 j_index_end = jindex[iidx+1];
1481 /* Get outer coordinate index */
1483 i_coord_offset = DIM*inr;
1485 /* Load i particle coords and add shift vector */
1486 gmx_mm256_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1487 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1489 fix0 = _mm256_setzero_pd();
1490 fiy0 = _mm256_setzero_pd();
1491 fiz0 = _mm256_setzero_pd();
1492 fix1 = _mm256_setzero_pd();
1493 fiy1 = _mm256_setzero_pd();
1494 fiz1 = _mm256_setzero_pd();
1495 fix2 = _mm256_setzero_pd();
1496 fiy2 = _mm256_setzero_pd();
1497 fiz2 = _mm256_setzero_pd();
1499 /* Start inner kernel loop */
1500 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1503 /* Get j neighbor index, and coordinate index */
1505 jnrB = jjnr[jidx+1];
1506 jnrC = jjnr[jidx+2];
1507 jnrD = jjnr[jidx+3];
1508 j_coord_offsetA = DIM*jnrA;
1509 j_coord_offsetB = DIM*jnrB;
1510 j_coord_offsetC = DIM*jnrC;
1511 j_coord_offsetD = DIM*jnrD;
1513 /* load j atom coordinates */
1514 gmx_mm256_load_3rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1515 x+j_coord_offsetC,x+j_coord_offsetD,
1516 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1518 /* Calculate displacement vector */
1519 dx00 = _mm256_sub_pd(ix0,jx0);
1520 dy00 = _mm256_sub_pd(iy0,jy0);
1521 dz00 = _mm256_sub_pd(iz0,jz0);
1522 dx01 = _mm256_sub_pd(ix0,jx1);
1523 dy01 = _mm256_sub_pd(iy0,jy1);
1524 dz01 = _mm256_sub_pd(iz0,jz1);
1525 dx02 = _mm256_sub_pd(ix0,jx2);
1526 dy02 = _mm256_sub_pd(iy0,jy2);
1527 dz02 = _mm256_sub_pd(iz0,jz2);
1528 dx10 = _mm256_sub_pd(ix1,jx0);
1529 dy10 = _mm256_sub_pd(iy1,jy0);
1530 dz10 = _mm256_sub_pd(iz1,jz0);
1531 dx11 = _mm256_sub_pd(ix1,jx1);
1532 dy11 = _mm256_sub_pd(iy1,jy1);
1533 dz11 = _mm256_sub_pd(iz1,jz1);
1534 dx12 = _mm256_sub_pd(ix1,jx2);
1535 dy12 = _mm256_sub_pd(iy1,jy2);
1536 dz12 = _mm256_sub_pd(iz1,jz2);
1537 dx20 = _mm256_sub_pd(ix2,jx0);
1538 dy20 = _mm256_sub_pd(iy2,jy0);
1539 dz20 = _mm256_sub_pd(iz2,jz0);
1540 dx21 = _mm256_sub_pd(ix2,jx1);
1541 dy21 = _mm256_sub_pd(iy2,jy1);
1542 dz21 = _mm256_sub_pd(iz2,jz1);
1543 dx22 = _mm256_sub_pd(ix2,jx2);
1544 dy22 = _mm256_sub_pd(iy2,jy2);
1545 dz22 = _mm256_sub_pd(iz2,jz2);
1547 /* Calculate squared distance and things based on it */
1548 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
1549 rsq01 = gmx_mm256_calc_rsq_pd(dx01,dy01,dz01);
1550 rsq02 = gmx_mm256_calc_rsq_pd(dx02,dy02,dz02);
1551 rsq10 = gmx_mm256_calc_rsq_pd(dx10,dy10,dz10);
1552 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
1553 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
1554 rsq20 = gmx_mm256_calc_rsq_pd(dx20,dy20,dz20);
1555 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
1556 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
1558 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
1559 rinv01 = gmx_mm256_invsqrt_pd(rsq01);
1560 rinv02 = gmx_mm256_invsqrt_pd(rsq02);
1561 rinv10 = gmx_mm256_invsqrt_pd(rsq10);
1562 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
1563 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
1564 rinv20 = gmx_mm256_invsqrt_pd(rsq20);
1565 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
1566 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
1568 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
1569 rinvsq01 = _mm256_mul_pd(rinv01,rinv01);
1570 rinvsq02 = _mm256_mul_pd(rinv02,rinv02);
1571 rinvsq10 = _mm256_mul_pd(rinv10,rinv10);
1572 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
1573 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
1574 rinvsq20 = _mm256_mul_pd(rinv20,rinv20);
1575 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
1576 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
1578 fjx0 = _mm256_setzero_pd();
1579 fjy0 = _mm256_setzero_pd();
1580 fjz0 = _mm256_setzero_pd();
1581 fjx1 = _mm256_setzero_pd();
1582 fjy1 = _mm256_setzero_pd();
1583 fjz1 = _mm256_setzero_pd();
1584 fjx2 = _mm256_setzero_pd();
1585 fjy2 = _mm256_setzero_pd();
1586 fjz2 = _mm256_setzero_pd();
1588 /**************************
1589 * CALCULATE INTERACTIONS *
1590 **************************/
1592 r00 = _mm256_mul_pd(rsq00,rinv00);
1594 /* Calculate table index by multiplying r with table scale and truncate to integer */
1595 rt = _mm256_mul_pd(r00,vftabscale);
1596 vfitab = _mm256_cvttpd_epi32(rt);
1597 vfeps = _mm256_sub_pd(rt,_mm256_round_pd(rt, _MM_FROUND_FLOOR));
1598 vfitab = _mm_slli_epi32(vfitab,3);
1600 /* EWALD ELECTROSTATICS */
1602 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1603 ewrt = _mm256_mul_pd(r00,ewtabscale);
1604 ewitab = _mm256_cvttpd_epi32(ewrt);
1605 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1606 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1607 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1609 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1610 felec = _mm256_mul_pd(_mm256_mul_pd(qq00,rinv00),_mm256_sub_pd(rinvsq00,felec));
1612 /* CUBIC SPLINE TABLE DISPERSION */
1613 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
1614 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
1615 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
1616 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
1617 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
1618 Heps = _mm256_mul_pd(vfeps,H);
1619 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
1620 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
1621 fvdw6 = _mm256_mul_pd(c6_00,FF);
1623 /* CUBIC SPLINE TABLE REPULSION */
1624 vfitab = _mm_add_epi32(vfitab,ifour);
1625 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
1626 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
1627 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
1628 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
1629 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
1630 Heps = _mm256_mul_pd(vfeps,H);
1631 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
1632 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
1633 fvdw12 = _mm256_mul_pd(c12_00,FF);
1634 fvdw = _mm256_xor_pd(signbit,_mm256_mul_pd(_mm256_add_pd(fvdw6,fvdw12),_mm256_mul_pd(vftabscale,rinv00)));
1636 fscal = _mm256_add_pd(felec,fvdw);
1638 /* Calculate temporary vectorial force */
1639 tx = _mm256_mul_pd(fscal,dx00);
1640 ty = _mm256_mul_pd(fscal,dy00);
1641 tz = _mm256_mul_pd(fscal,dz00);
1643 /* Update vectorial force */
1644 fix0 = _mm256_add_pd(fix0,tx);
1645 fiy0 = _mm256_add_pd(fiy0,ty);
1646 fiz0 = _mm256_add_pd(fiz0,tz);
1648 fjx0 = _mm256_add_pd(fjx0,tx);
1649 fjy0 = _mm256_add_pd(fjy0,ty);
1650 fjz0 = _mm256_add_pd(fjz0,tz);
1652 /**************************
1653 * CALCULATE INTERACTIONS *
1654 **************************/
1656 r01 = _mm256_mul_pd(rsq01,rinv01);
1658 /* EWALD ELECTROSTATICS */
1660 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1661 ewrt = _mm256_mul_pd(r01,ewtabscale);
1662 ewitab = _mm256_cvttpd_epi32(ewrt);
1663 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1664 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1665 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1667 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1668 felec = _mm256_mul_pd(_mm256_mul_pd(qq01,rinv01),_mm256_sub_pd(rinvsq01,felec));
1672 /* Calculate temporary vectorial force */
1673 tx = _mm256_mul_pd(fscal,dx01);
1674 ty = _mm256_mul_pd(fscal,dy01);
1675 tz = _mm256_mul_pd(fscal,dz01);
1677 /* Update vectorial force */
1678 fix0 = _mm256_add_pd(fix0,tx);
1679 fiy0 = _mm256_add_pd(fiy0,ty);
1680 fiz0 = _mm256_add_pd(fiz0,tz);
1682 fjx1 = _mm256_add_pd(fjx1,tx);
1683 fjy1 = _mm256_add_pd(fjy1,ty);
1684 fjz1 = _mm256_add_pd(fjz1,tz);
1686 /**************************
1687 * CALCULATE INTERACTIONS *
1688 **************************/
1690 r02 = _mm256_mul_pd(rsq02,rinv02);
1692 /* EWALD ELECTROSTATICS */
1694 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1695 ewrt = _mm256_mul_pd(r02,ewtabscale);
1696 ewitab = _mm256_cvttpd_epi32(ewrt);
1697 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1698 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1699 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1701 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1702 felec = _mm256_mul_pd(_mm256_mul_pd(qq02,rinv02),_mm256_sub_pd(rinvsq02,felec));
1706 /* Calculate temporary vectorial force */
1707 tx = _mm256_mul_pd(fscal,dx02);
1708 ty = _mm256_mul_pd(fscal,dy02);
1709 tz = _mm256_mul_pd(fscal,dz02);
1711 /* Update vectorial force */
1712 fix0 = _mm256_add_pd(fix0,tx);
1713 fiy0 = _mm256_add_pd(fiy0,ty);
1714 fiz0 = _mm256_add_pd(fiz0,tz);
1716 fjx2 = _mm256_add_pd(fjx2,tx);
1717 fjy2 = _mm256_add_pd(fjy2,ty);
1718 fjz2 = _mm256_add_pd(fjz2,tz);
1720 /**************************
1721 * CALCULATE INTERACTIONS *
1722 **************************/
1724 r10 = _mm256_mul_pd(rsq10,rinv10);
1726 /* EWALD ELECTROSTATICS */
1728 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1729 ewrt = _mm256_mul_pd(r10,ewtabscale);
1730 ewitab = _mm256_cvttpd_epi32(ewrt);
1731 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1732 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1733 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1735 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1736 felec = _mm256_mul_pd(_mm256_mul_pd(qq10,rinv10),_mm256_sub_pd(rinvsq10,felec));
1740 /* Calculate temporary vectorial force */
1741 tx = _mm256_mul_pd(fscal,dx10);
1742 ty = _mm256_mul_pd(fscal,dy10);
1743 tz = _mm256_mul_pd(fscal,dz10);
1745 /* Update vectorial force */
1746 fix1 = _mm256_add_pd(fix1,tx);
1747 fiy1 = _mm256_add_pd(fiy1,ty);
1748 fiz1 = _mm256_add_pd(fiz1,tz);
1750 fjx0 = _mm256_add_pd(fjx0,tx);
1751 fjy0 = _mm256_add_pd(fjy0,ty);
1752 fjz0 = _mm256_add_pd(fjz0,tz);
1754 /**************************
1755 * CALCULATE INTERACTIONS *
1756 **************************/
1758 r11 = _mm256_mul_pd(rsq11,rinv11);
1760 /* EWALD ELECTROSTATICS */
1762 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1763 ewrt = _mm256_mul_pd(r11,ewtabscale);
1764 ewitab = _mm256_cvttpd_epi32(ewrt);
1765 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1766 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1767 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1769 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1770 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
1774 /* Calculate temporary vectorial force */
1775 tx = _mm256_mul_pd(fscal,dx11);
1776 ty = _mm256_mul_pd(fscal,dy11);
1777 tz = _mm256_mul_pd(fscal,dz11);
1779 /* Update vectorial force */
1780 fix1 = _mm256_add_pd(fix1,tx);
1781 fiy1 = _mm256_add_pd(fiy1,ty);
1782 fiz1 = _mm256_add_pd(fiz1,tz);
1784 fjx1 = _mm256_add_pd(fjx1,tx);
1785 fjy1 = _mm256_add_pd(fjy1,ty);
1786 fjz1 = _mm256_add_pd(fjz1,tz);
1788 /**************************
1789 * CALCULATE INTERACTIONS *
1790 **************************/
1792 r12 = _mm256_mul_pd(rsq12,rinv12);
1794 /* EWALD ELECTROSTATICS */
1796 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1797 ewrt = _mm256_mul_pd(r12,ewtabscale);
1798 ewitab = _mm256_cvttpd_epi32(ewrt);
1799 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1800 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1801 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1803 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1804 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
1808 /* Calculate temporary vectorial force */
1809 tx = _mm256_mul_pd(fscal,dx12);
1810 ty = _mm256_mul_pd(fscal,dy12);
1811 tz = _mm256_mul_pd(fscal,dz12);
1813 /* Update vectorial force */
1814 fix1 = _mm256_add_pd(fix1,tx);
1815 fiy1 = _mm256_add_pd(fiy1,ty);
1816 fiz1 = _mm256_add_pd(fiz1,tz);
1818 fjx2 = _mm256_add_pd(fjx2,tx);
1819 fjy2 = _mm256_add_pd(fjy2,ty);
1820 fjz2 = _mm256_add_pd(fjz2,tz);
1822 /**************************
1823 * CALCULATE INTERACTIONS *
1824 **************************/
1826 r20 = _mm256_mul_pd(rsq20,rinv20);
1828 /* EWALD ELECTROSTATICS */
1830 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1831 ewrt = _mm256_mul_pd(r20,ewtabscale);
1832 ewitab = _mm256_cvttpd_epi32(ewrt);
1833 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1834 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1835 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1837 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1838 felec = _mm256_mul_pd(_mm256_mul_pd(qq20,rinv20),_mm256_sub_pd(rinvsq20,felec));
1842 /* Calculate temporary vectorial force */
1843 tx = _mm256_mul_pd(fscal,dx20);
1844 ty = _mm256_mul_pd(fscal,dy20);
1845 tz = _mm256_mul_pd(fscal,dz20);
1847 /* Update vectorial force */
1848 fix2 = _mm256_add_pd(fix2,tx);
1849 fiy2 = _mm256_add_pd(fiy2,ty);
1850 fiz2 = _mm256_add_pd(fiz2,tz);
1852 fjx0 = _mm256_add_pd(fjx0,tx);
1853 fjy0 = _mm256_add_pd(fjy0,ty);
1854 fjz0 = _mm256_add_pd(fjz0,tz);
1856 /**************************
1857 * CALCULATE INTERACTIONS *
1858 **************************/
1860 r21 = _mm256_mul_pd(rsq21,rinv21);
1862 /* EWALD ELECTROSTATICS */
1864 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1865 ewrt = _mm256_mul_pd(r21,ewtabscale);
1866 ewitab = _mm256_cvttpd_epi32(ewrt);
1867 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1868 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1869 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1871 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1872 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
1876 /* Calculate temporary vectorial force */
1877 tx = _mm256_mul_pd(fscal,dx21);
1878 ty = _mm256_mul_pd(fscal,dy21);
1879 tz = _mm256_mul_pd(fscal,dz21);
1881 /* Update vectorial force */
1882 fix2 = _mm256_add_pd(fix2,tx);
1883 fiy2 = _mm256_add_pd(fiy2,ty);
1884 fiz2 = _mm256_add_pd(fiz2,tz);
1886 fjx1 = _mm256_add_pd(fjx1,tx);
1887 fjy1 = _mm256_add_pd(fjy1,ty);
1888 fjz1 = _mm256_add_pd(fjz1,tz);
1890 /**************************
1891 * CALCULATE INTERACTIONS *
1892 **************************/
1894 r22 = _mm256_mul_pd(rsq22,rinv22);
1896 /* EWALD ELECTROSTATICS */
1898 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1899 ewrt = _mm256_mul_pd(r22,ewtabscale);
1900 ewitab = _mm256_cvttpd_epi32(ewrt);
1901 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1902 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1903 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1905 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1906 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
1910 /* Calculate temporary vectorial force */
1911 tx = _mm256_mul_pd(fscal,dx22);
1912 ty = _mm256_mul_pd(fscal,dy22);
1913 tz = _mm256_mul_pd(fscal,dz22);
1915 /* Update vectorial force */
1916 fix2 = _mm256_add_pd(fix2,tx);
1917 fiy2 = _mm256_add_pd(fiy2,ty);
1918 fiz2 = _mm256_add_pd(fiz2,tz);
1920 fjx2 = _mm256_add_pd(fjx2,tx);
1921 fjy2 = _mm256_add_pd(fjy2,ty);
1922 fjz2 = _mm256_add_pd(fjz2,tz);
1924 fjptrA = f+j_coord_offsetA;
1925 fjptrB = f+j_coord_offsetB;
1926 fjptrC = f+j_coord_offsetC;
1927 fjptrD = f+j_coord_offsetD;
1929 gmx_mm256_decrement_3rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
1930 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1932 /* Inner loop uses 350 flops */
1935 if(jidx<j_index_end)
1938 /* Get j neighbor index, and coordinate index */
1939 jnrlistA = jjnr[jidx];
1940 jnrlistB = jjnr[jidx+1];
1941 jnrlistC = jjnr[jidx+2];
1942 jnrlistD = jjnr[jidx+3];
1943 /* Sign of each element will be negative for non-real atoms.
1944 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1945 * so use it as val = _mm_andnot_pd(mask,val) to clear dummy entries.
1947 tmpmask0 = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1949 tmpmask1 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(3,3,2,2));
1950 tmpmask0 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(1,1,0,0));
1951 dummy_mask = _mm256_castps_pd(gmx_mm256_set_m128(tmpmask1,tmpmask0));
1953 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1954 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1955 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1956 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1957 j_coord_offsetA = DIM*jnrA;
1958 j_coord_offsetB = DIM*jnrB;
1959 j_coord_offsetC = DIM*jnrC;
1960 j_coord_offsetD = DIM*jnrD;
1962 /* load j atom coordinates */
1963 gmx_mm256_load_3rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1964 x+j_coord_offsetC,x+j_coord_offsetD,
1965 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1967 /* Calculate displacement vector */
1968 dx00 = _mm256_sub_pd(ix0,jx0);
1969 dy00 = _mm256_sub_pd(iy0,jy0);
1970 dz00 = _mm256_sub_pd(iz0,jz0);
1971 dx01 = _mm256_sub_pd(ix0,jx1);
1972 dy01 = _mm256_sub_pd(iy0,jy1);
1973 dz01 = _mm256_sub_pd(iz0,jz1);
1974 dx02 = _mm256_sub_pd(ix0,jx2);
1975 dy02 = _mm256_sub_pd(iy0,jy2);
1976 dz02 = _mm256_sub_pd(iz0,jz2);
1977 dx10 = _mm256_sub_pd(ix1,jx0);
1978 dy10 = _mm256_sub_pd(iy1,jy0);
1979 dz10 = _mm256_sub_pd(iz1,jz0);
1980 dx11 = _mm256_sub_pd(ix1,jx1);
1981 dy11 = _mm256_sub_pd(iy1,jy1);
1982 dz11 = _mm256_sub_pd(iz1,jz1);
1983 dx12 = _mm256_sub_pd(ix1,jx2);
1984 dy12 = _mm256_sub_pd(iy1,jy2);
1985 dz12 = _mm256_sub_pd(iz1,jz2);
1986 dx20 = _mm256_sub_pd(ix2,jx0);
1987 dy20 = _mm256_sub_pd(iy2,jy0);
1988 dz20 = _mm256_sub_pd(iz2,jz0);
1989 dx21 = _mm256_sub_pd(ix2,jx1);
1990 dy21 = _mm256_sub_pd(iy2,jy1);
1991 dz21 = _mm256_sub_pd(iz2,jz1);
1992 dx22 = _mm256_sub_pd(ix2,jx2);
1993 dy22 = _mm256_sub_pd(iy2,jy2);
1994 dz22 = _mm256_sub_pd(iz2,jz2);
1996 /* Calculate squared distance and things based on it */
1997 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
1998 rsq01 = gmx_mm256_calc_rsq_pd(dx01,dy01,dz01);
1999 rsq02 = gmx_mm256_calc_rsq_pd(dx02,dy02,dz02);
2000 rsq10 = gmx_mm256_calc_rsq_pd(dx10,dy10,dz10);
2001 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
2002 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
2003 rsq20 = gmx_mm256_calc_rsq_pd(dx20,dy20,dz20);
2004 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
2005 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
2007 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
2008 rinv01 = gmx_mm256_invsqrt_pd(rsq01);
2009 rinv02 = gmx_mm256_invsqrt_pd(rsq02);
2010 rinv10 = gmx_mm256_invsqrt_pd(rsq10);
2011 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
2012 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
2013 rinv20 = gmx_mm256_invsqrt_pd(rsq20);
2014 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
2015 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
2017 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
2018 rinvsq01 = _mm256_mul_pd(rinv01,rinv01);
2019 rinvsq02 = _mm256_mul_pd(rinv02,rinv02);
2020 rinvsq10 = _mm256_mul_pd(rinv10,rinv10);
2021 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
2022 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
2023 rinvsq20 = _mm256_mul_pd(rinv20,rinv20);
2024 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
2025 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
2027 fjx0 = _mm256_setzero_pd();
2028 fjy0 = _mm256_setzero_pd();
2029 fjz0 = _mm256_setzero_pd();
2030 fjx1 = _mm256_setzero_pd();
2031 fjy1 = _mm256_setzero_pd();
2032 fjz1 = _mm256_setzero_pd();
2033 fjx2 = _mm256_setzero_pd();
2034 fjy2 = _mm256_setzero_pd();
2035 fjz2 = _mm256_setzero_pd();
2037 /**************************
2038 * CALCULATE INTERACTIONS *
2039 **************************/
2041 r00 = _mm256_mul_pd(rsq00,rinv00);
2042 r00 = _mm256_andnot_pd(dummy_mask,r00);
2044 /* Calculate table index by multiplying r with table scale and truncate to integer */
2045 rt = _mm256_mul_pd(r00,vftabscale);
2046 vfitab = _mm256_cvttpd_epi32(rt);
2047 vfeps = _mm256_sub_pd(rt,_mm256_round_pd(rt, _MM_FROUND_FLOOR));
2048 vfitab = _mm_slli_epi32(vfitab,3);
2050 /* EWALD ELECTROSTATICS */
2052 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2053 ewrt = _mm256_mul_pd(r00,ewtabscale);
2054 ewitab = _mm256_cvttpd_epi32(ewrt);
2055 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2056 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2057 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2059 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2060 felec = _mm256_mul_pd(_mm256_mul_pd(qq00,rinv00),_mm256_sub_pd(rinvsq00,felec));
2062 /* CUBIC SPLINE TABLE DISPERSION */
2063 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
2064 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
2065 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
2066 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
2067 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
2068 Heps = _mm256_mul_pd(vfeps,H);
2069 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
2070 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
2071 fvdw6 = _mm256_mul_pd(c6_00,FF);
2073 /* CUBIC SPLINE TABLE REPULSION */
2074 vfitab = _mm_add_epi32(vfitab,ifour);
2075 Y = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
2076 F = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
2077 G = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,2) );
2078 H = _mm256_load_pd( vftab + _mm_extract_epi32(vfitab,3) );
2079 GMX_MM256_FULLTRANSPOSE4_PD(Y,F,G,H);
2080 Heps = _mm256_mul_pd(vfeps,H);
2081 Fp = _mm256_add_pd(F,_mm256_mul_pd(vfeps,_mm256_add_pd(G,Heps)));
2082 FF = _mm256_add_pd(Fp,_mm256_mul_pd(vfeps,_mm256_add_pd(G,_mm256_add_pd(Heps,Heps))));
2083 fvdw12 = _mm256_mul_pd(c12_00,FF);
2084 fvdw = _mm256_xor_pd(signbit,_mm256_mul_pd(_mm256_add_pd(fvdw6,fvdw12),_mm256_mul_pd(vftabscale,rinv00)));
2086 fscal = _mm256_add_pd(felec,fvdw);
2088 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2090 /* Calculate temporary vectorial force */
2091 tx = _mm256_mul_pd(fscal,dx00);
2092 ty = _mm256_mul_pd(fscal,dy00);
2093 tz = _mm256_mul_pd(fscal,dz00);
2095 /* Update vectorial force */
2096 fix0 = _mm256_add_pd(fix0,tx);
2097 fiy0 = _mm256_add_pd(fiy0,ty);
2098 fiz0 = _mm256_add_pd(fiz0,tz);
2100 fjx0 = _mm256_add_pd(fjx0,tx);
2101 fjy0 = _mm256_add_pd(fjy0,ty);
2102 fjz0 = _mm256_add_pd(fjz0,tz);
2104 /**************************
2105 * CALCULATE INTERACTIONS *
2106 **************************/
2108 r01 = _mm256_mul_pd(rsq01,rinv01);
2109 r01 = _mm256_andnot_pd(dummy_mask,r01);
2111 /* EWALD ELECTROSTATICS */
2113 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2114 ewrt = _mm256_mul_pd(r01,ewtabscale);
2115 ewitab = _mm256_cvttpd_epi32(ewrt);
2116 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2117 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2118 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2120 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2121 felec = _mm256_mul_pd(_mm256_mul_pd(qq01,rinv01),_mm256_sub_pd(rinvsq01,felec));
2125 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2127 /* Calculate temporary vectorial force */
2128 tx = _mm256_mul_pd(fscal,dx01);
2129 ty = _mm256_mul_pd(fscal,dy01);
2130 tz = _mm256_mul_pd(fscal,dz01);
2132 /* Update vectorial force */
2133 fix0 = _mm256_add_pd(fix0,tx);
2134 fiy0 = _mm256_add_pd(fiy0,ty);
2135 fiz0 = _mm256_add_pd(fiz0,tz);
2137 fjx1 = _mm256_add_pd(fjx1,tx);
2138 fjy1 = _mm256_add_pd(fjy1,ty);
2139 fjz1 = _mm256_add_pd(fjz1,tz);
2141 /**************************
2142 * CALCULATE INTERACTIONS *
2143 **************************/
2145 r02 = _mm256_mul_pd(rsq02,rinv02);
2146 r02 = _mm256_andnot_pd(dummy_mask,r02);
2148 /* EWALD ELECTROSTATICS */
2150 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2151 ewrt = _mm256_mul_pd(r02,ewtabscale);
2152 ewitab = _mm256_cvttpd_epi32(ewrt);
2153 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2154 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2155 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2157 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2158 felec = _mm256_mul_pd(_mm256_mul_pd(qq02,rinv02),_mm256_sub_pd(rinvsq02,felec));
2162 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2164 /* Calculate temporary vectorial force */
2165 tx = _mm256_mul_pd(fscal,dx02);
2166 ty = _mm256_mul_pd(fscal,dy02);
2167 tz = _mm256_mul_pd(fscal,dz02);
2169 /* Update vectorial force */
2170 fix0 = _mm256_add_pd(fix0,tx);
2171 fiy0 = _mm256_add_pd(fiy0,ty);
2172 fiz0 = _mm256_add_pd(fiz0,tz);
2174 fjx2 = _mm256_add_pd(fjx2,tx);
2175 fjy2 = _mm256_add_pd(fjy2,ty);
2176 fjz2 = _mm256_add_pd(fjz2,tz);
2178 /**************************
2179 * CALCULATE INTERACTIONS *
2180 **************************/
2182 r10 = _mm256_mul_pd(rsq10,rinv10);
2183 r10 = _mm256_andnot_pd(dummy_mask,r10);
2185 /* EWALD ELECTROSTATICS */
2187 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2188 ewrt = _mm256_mul_pd(r10,ewtabscale);
2189 ewitab = _mm256_cvttpd_epi32(ewrt);
2190 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2191 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2192 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2194 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2195 felec = _mm256_mul_pd(_mm256_mul_pd(qq10,rinv10),_mm256_sub_pd(rinvsq10,felec));
2199 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2201 /* Calculate temporary vectorial force */
2202 tx = _mm256_mul_pd(fscal,dx10);
2203 ty = _mm256_mul_pd(fscal,dy10);
2204 tz = _mm256_mul_pd(fscal,dz10);
2206 /* Update vectorial force */
2207 fix1 = _mm256_add_pd(fix1,tx);
2208 fiy1 = _mm256_add_pd(fiy1,ty);
2209 fiz1 = _mm256_add_pd(fiz1,tz);
2211 fjx0 = _mm256_add_pd(fjx0,tx);
2212 fjy0 = _mm256_add_pd(fjy0,ty);
2213 fjz0 = _mm256_add_pd(fjz0,tz);
2215 /**************************
2216 * CALCULATE INTERACTIONS *
2217 **************************/
2219 r11 = _mm256_mul_pd(rsq11,rinv11);
2220 r11 = _mm256_andnot_pd(dummy_mask,r11);
2222 /* EWALD ELECTROSTATICS */
2224 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2225 ewrt = _mm256_mul_pd(r11,ewtabscale);
2226 ewitab = _mm256_cvttpd_epi32(ewrt);
2227 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2228 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2229 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2231 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2232 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
2236 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2238 /* Calculate temporary vectorial force */
2239 tx = _mm256_mul_pd(fscal,dx11);
2240 ty = _mm256_mul_pd(fscal,dy11);
2241 tz = _mm256_mul_pd(fscal,dz11);
2243 /* Update vectorial force */
2244 fix1 = _mm256_add_pd(fix1,tx);
2245 fiy1 = _mm256_add_pd(fiy1,ty);
2246 fiz1 = _mm256_add_pd(fiz1,tz);
2248 fjx1 = _mm256_add_pd(fjx1,tx);
2249 fjy1 = _mm256_add_pd(fjy1,ty);
2250 fjz1 = _mm256_add_pd(fjz1,tz);
2252 /**************************
2253 * CALCULATE INTERACTIONS *
2254 **************************/
2256 r12 = _mm256_mul_pd(rsq12,rinv12);
2257 r12 = _mm256_andnot_pd(dummy_mask,r12);
2259 /* EWALD ELECTROSTATICS */
2261 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2262 ewrt = _mm256_mul_pd(r12,ewtabscale);
2263 ewitab = _mm256_cvttpd_epi32(ewrt);
2264 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2265 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2266 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2268 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2269 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
2273 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2275 /* Calculate temporary vectorial force */
2276 tx = _mm256_mul_pd(fscal,dx12);
2277 ty = _mm256_mul_pd(fscal,dy12);
2278 tz = _mm256_mul_pd(fscal,dz12);
2280 /* Update vectorial force */
2281 fix1 = _mm256_add_pd(fix1,tx);
2282 fiy1 = _mm256_add_pd(fiy1,ty);
2283 fiz1 = _mm256_add_pd(fiz1,tz);
2285 fjx2 = _mm256_add_pd(fjx2,tx);
2286 fjy2 = _mm256_add_pd(fjy2,ty);
2287 fjz2 = _mm256_add_pd(fjz2,tz);
2289 /**************************
2290 * CALCULATE INTERACTIONS *
2291 **************************/
2293 r20 = _mm256_mul_pd(rsq20,rinv20);
2294 r20 = _mm256_andnot_pd(dummy_mask,r20);
2296 /* EWALD ELECTROSTATICS */
2298 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2299 ewrt = _mm256_mul_pd(r20,ewtabscale);
2300 ewitab = _mm256_cvttpd_epi32(ewrt);
2301 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2302 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2303 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2305 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2306 felec = _mm256_mul_pd(_mm256_mul_pd(qq20,rinv20),_mm256_sub_pd(rinvsq20,felec));
2310 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2312 /* Calculate temporary vectorial force */
2313 tx = _mm256_mul_pd(fscal,dx20);
2314 ty = _mm256_mul_pd(fscal,dy20);
2315 tz = _mm256_mul_pd(fscal,dz20);
2317 /* Update vectorial force */
2318 fix2 = _mm256_add_pd(fix2,tx);
2319 fiy2 = _mm256_add_pd(fiy2,ty);
2320 fiz2 = _mm256_add_pd(fiz2,tz);
2322 fjx0 = _mm256_add_pd(fjx0,tx);
2323 fjy0 = _mm256_add_pd(fjy0,ty);
2324 fjz0 = _mm256_add_pd(fjz0,tz);
2326 /**************************
2327 * CALCULATE INTERACTIONS *
2328 **************************/
2330 r21 = _mm256_mul_pd(rsq21,rinv21);
2331 r21 = _mm256_andnot_pd(dummy_mask,r21);
2333 /* EWALD ELECTROSTATICS */
2335 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2336 ewrt = _mm256_mul_pd(r21,ewtabscale);
2337 ewitab = _mm256_cvttpd_epi32(ewrt);
2338 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2339 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2340 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2342 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2343 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
2347 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2349 /* Calculate temporary vectorial force */
2350 tx = _mm256_mul_pd(fscal,dx21);
2351 ty = _mm256_mul_pd(fscal,dy21);
2352 tz = _mm256_mul_pd(fscal,dz21);
2354 /* Update vectorial force */
2355 fix2 = _mm256_add_pd(fix2,tx);
2356 fiy2 = _mm256_add_pd(fiy2,ty);
2357 fiz2 = _mm256_add_pd(fiz2,tz);
2359 fjx1 = _mm256_add_pd(fjx1,tx);
2360 fjy1 = _mm256_add_pd(fjy1,ty);
2361 fjz1 = _mm256_add_pd(fjz1,tz);
2363 /**************************
2364 * CALCULATE INTERACTIONS *
2365 **************************/
2367 r22 = _mm256_mul_pd(rsq22,rinv22);
2368 r22 = _mm256_andnot_pd(dummy_mask,r22);
2370 /* EWALD ELECTROSTATICS */
2372 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2373 ewrt = _mm256_mul_pd(r22,ewtabscale);
2374 ewitab = _mm256_cvttpd_epi32(ewrt);
2375 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2376 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2377 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2379 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2380 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
2384 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2386 /* Calculate temporary vectorial force */
2387 tx = _mm256_mul_pd(fscal,dx22);
2388 ty = _mm256_mul_pd(fscal,dy22);
2389 tz = _mm256_mul_pd(fscal,dz22);
2391 /* Update vectorial force */
2392 fix2 = _mm256_add_pd(fix2,tx);
2393 fiy2 = _mm256_add_pd(fiy2,ty);
2394 fiz2 = _mm256_add_pd(fiz2,tz);
2396 fjx2 = _mm256_add_pd(fjx2,tx);
2397 fjy2 = _mm256_add_pd(fjy2,ty);
2398 fjz2 = _mm256_add_pd(fjz2,tz);
2400 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
2401 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
2402 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
2403 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
2405 gmx_mm256_decrement_3rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
2406 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2408 /* Inner loop uses 359 flops */
2411 /* End of innermost loop */
2413 gmx_mm256_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2414 f+i_coord_offset,fshift+i_shift_offset);
2416 /* Increment number of inner iterations */
2417 inneriter += j_index_end - j_index_start;
2419 /* Outer loop uses 18 flops */
2422 /* Increment number of outer iterations */
2425 /* Update outer/inner flops */
2427 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*359);