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36 * Note: this file was generated by the GROMACS avx_256_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "types/simple.h"
46 #include "gromacs/math/vec.h"
49 #include "gromacs/simd/math_x86_avx_256_double.h"
50 #include "kernelutil_x86_avx_256_double.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_VF_avx_256_double
54 * Electrostatics interaction: Ewald
55 * VdW interaction: LJEwald
56 * Geometry: Water4-Water4
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_VF_avx_256_double
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B,C,D refer to j loop unrolling done with AVX, e.g. for the four different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
76 int jnrA,jnrB,jnrC,jnrD;
77 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
78 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
79 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
80 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
82 real *shiftvec,*fshift,*x,*f;
83 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
85 __m256d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
86 real * vdwioffsetptr0;
87 real * vdwgridioffsetptr0;
88 __m256d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
89 real * vdwioffsetptr1;
90 real * vdwgridioffsetptr1;
91 __m256d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
92 real * vdwioffsetptr2;
93 real * vdwgridioffsetptr2;
94 __m256d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
95 real * vdwioffsetptr3;
96 real * vdwgridioffsetptr3;
97 __m256d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
98 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
99 __m256d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
100 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
101 __m256d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
102 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
103 __m256d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
104 int vdwjidx3A,vdwjidx3B,vdwjidx3C,vdwjidx3D;
105 __m256d jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
106 __m256d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
107 __m256d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
108 __m256d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
109 __m256d dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
110 __m256d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
111 __m256d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
112 __m256d dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
113 __m256d dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
114 __m256d dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
115 __m256d dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
116 __m256d velec,felec,velecsum,facel,crf,krf,krf2;
119 __m256d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
122 __m256d one_sixth = _mm256_set1_pd(1.0/6.0);
123 __m256d one_twelfth = _mm256_set1_pd(1.0/12.0);
135 __m256d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
136 __m256d one_half = _mm256_set1_pd(0.5);
137 __m256d minus_one = _mm256_set1_pd(-1.0);
139 __m256d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
140 __m256d beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
142 __m256d dummy_mask,cutoff_mask;
143 __m128 tmpmask0,tmpmask1;
144 __m256d signbit = _mm256_castsi256_pd( _mm256_set1_epi32(0x80000000) );
145 __m256d one = _mm256_set1_pd(1.0);
146 __m256d two = _mm256_set1_pd(2.0);
152 jindex = nlist->jindex;
154 shiftidx = nlist->shift;
156 shiftvec = fr->shift_vec[0];
157 fshift = fr->fshift[0];
158 facel = _mm256_set1_pd(fr->epsfac);
159 charge = mdatoms->chargeA;
160 nvdwtype = fr->ntype;
162 vdwtype = mdatoms->typeA;
163 vdwgridparam = fr->ljpme_c6grid;
164 sh_lj_ewald = _mm256_set1_pd(fr->ic->sh_lj_ewald);
165 ewclj = _mm256_set1_pd(fr->ewaldcoeff_lj);
166 ewclj2 = _mm256_mul_pd(minus_one,_mm256_mul_pd(ewclj,ewclj));
168 sh_ewald = _mm256_set1_pd(fr->ic->sh_ewald);
169 beta = _mm256_set1_pd(fr->ic->ewaldcoeff_q);
170 beta2 = _mm256_mul_pd(beta,beta);
171 beta3 = _mm256_mul_pd(beta,beta2);
173 ewtab = fr->ic->tabq_coul_FDV0;
174 ewtabscale = _mm256_set1_pd(fr->ic->tabq_scale);
175 ewtabhalfspace = _mm256_set1_pd(0.5/fr->ic->tabq_scale);
177 /* Setup water-specific parameters */
178 inr = nlist->iinr[0];
179 iq1 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+1]));
180 iq2 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+2]));
181 iq3 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+3]));
182 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
183 vdwgridioffsetptr0 = vdwgridparam+2*nvdwtype*vdwtype[inr+0];
185 jq1 = _mm256_set1_pd(charge[inr+1]);
186 jq2 = _mm256_set1_pd(charge[inr+2]);
187 jq3 = _mm256_set1_pd(charge[inr+3]);
188 vdwjidx0A = 2*vdwtype[inr+0];
189 c6_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A]);
190 c12_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A+1]);
191 c6grid_00 = _mm256_set1_pd(vdwgridioffsetptr0[vdwjidx0A]);
192 qq11 = _mm256_mul_pd(iq1,jq1);
193 qq12 = _mm256_mul_pd(iq1,jq2);
194 qq13 = _mm256_mul_pd(iq1,jq3);
195 qq21 = _mm256_mul_pd(iq2,jq1);
196 qq22 = _mm256_mul_pd(iq2,jq2);
197 qq23 = _mm256_mul_pd(iq2,jq3);
198 qq31 = _mm256_mul_pd(iq3,jq1);
199 qq32 = _mm256_mul_pd(iq3,jq2);
200 qq33 = _mm256_mul_pd(iq3,jq3);
202 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
203 rcutoff_scalar = fr->rcoulomb;
204 rcutoff = _mm256_set1_pd(rcutoff_scalar);
205 rcutoff2 = _mm256_mul_pd(rcutoff,rcutoff);
207 sh_vdw_invrcut6 = _mm256_set1_pd(fr->ic->sh_invrc6);
208 rvdw = _mm256_set1_pd(fr->rvdw);
210 /* Avoid stupid compiler warnings */
211 jnrA = jnrB = jnrC = jnrD = 0;
220 for(iidx=0;iidx<4*DIM;iidx++)
225 /* Start outer loop over neighborlists */
226 for(iidx=0; iidx<nri; iidx++)
228 /* Load shift vector for this list */
229 i_shift_offset = DIM*shiftidx[iidx];
231 /* Load limits for loop over neighbors */
232 j_index_start = jindex[iidx];
233 j_index_end = jindex[iidx+1];
235 /* Get outer coordinate index */
237 i_coord_offset = DIM*inr;
239 /* Load i particle coords and add shift vector */
240 gmx_mm256_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
241 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
243 fix0 = _mm256_setzero_pd();
244 fiy0 = _mm256_setzero_pd();
245 fiz0 = _mm256_setzero_pd();
246 fix1 = _mm256_setzero_pd();
247 fiy1 = _mm256_setzero_pd();
248 fiz1 = _mm256_setzero_pd();
249 fix2 = _mm256_setzero_pd();
250 fiy2 = _mm256_setzero_pd();
251 fiz2 = _mm256_setzero_pd();
252 fix3 = _mm256_setzero_pd();
253 fiy3 = _mm256_setzero_pd();
254 fiz3 = _mm256_setzero_pd();
256 /* Reset potential sums */
257 velecsum = _mm256_setzero_pd();
258 vvdwsum = _mm256_setzero_pd();
260 /* Start inner kernel loop */
261 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
264 /* Get j neighbor index, and coordinate index */
269 j_coord_offsetA = DIM*jnrA;
270 j_coord_offsetB = DIM*jnrB;
271 j_coord_offsetC = DIM*jnrC;
272 j_coord_offsetD = DIM*jnrD;
274 /* load j atom coordinates */
275 gmx_mm256_load_4rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
276 x+j_coord_offsetC,x+j_coord_offsetD,
277 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
278 &jy2,&jz2,&jx3,&jy3,&jz3);
280 /* Calculate displacement vector */
281 dx00 = _mm256_sub_pd(ix0,jx0);
282 dy00 = _mm256_sub_pd(iy0,jy0);
283 dz00 = _mm256_sub_pd(iz0,jz0);
284 dx11 = _mm256_sub_pd(ix1,jx1);
285 dy11 = _mm256_sub_pd(iy1,jy1);
286 dz11 = _mm256_sub_pd(iz1,jz1);
287 dx12 = _mm256_sub_pd(ix1,jx2);
288 dy12 = _mm256_sub_pd(iy1,jy2);
289 dz12 = _mm256_sub_pd(iz1,jz2);
290 dx13 = _mm256_sub_pd(ix1,jx3);
291 dy13 = _mm256_sub_pd(iy1,jy3);
292 dz13 = _mm256_sub_pd(iz1,jz3);
293 dx21 = _mm256_sub_pd(ix2,jx1);
294 dy21 = _mm256_sub_pd(iy2,jy1);
295 dz21 = _mm256_sub_pd(iz2,jz1);
296 dx22 = _mm256_sub_pd(ix2,jx2);
297 dy22 = _mm256_sub_pd(iy2,jy2);
298 dz22 = _mm256_sub_pd(iz2,jz2);
299 dx23 = _mm256_sub_pd(ix2,jx3);
300 dy23 = _mm256_sub_pd(iy2,jy3);
301 dz23 = _mm256_sub_pd(iz2,jz3);
302 dx31 = _mm256_sub_pd(ix3,jx1);
303 dy31 = _mm256_sub_pd(iy3,jy1);
304 dz31 = _mm256_sub_pd(iz3,jz1);
305 dx32 = _mm256_sub_pd(ix3,jx2);
306 dy32 = _mm256_sub_pd(iy3,jy2);
307 dz32 = _mm256_sub_pd(iz3,jz2);
308 dx33 = _mm256_sub_pd(ix3,jx3);
309 dy33 = _mm256_sub_pd(iy3,jy3);
310 dz33 = _mm256_sub_pd(iz3,jz3);
312 /* Calculate squared distance and things based on it */
313 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
314 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
315 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
316 rsq13 = gmx_mm256_calc_rsq_pd(dx13,dy13,dz13);
317 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
318 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
319 rsq23 = gmx_mm256_calc_rsq_pd(dx23,dy23,dz23);
320 rsq31 = gmx_mm256_calc_rsq_pd(dx31,dy31,dz31);
321 rsq32 = gmx_mm256_calc_rsq_pd(dx32,dy32,dz32);
322 rsq33 = gmx_mm256_calc_rsq_pd(dx33,dy33,dz33);
324 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
325 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
326 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
327 rinv13 = gmx_mm256_invsqrt_pd(rsq13);
328 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
329 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
330 rinv23 = gmx_mm256_invsqrt_pd(rsq23);
331 rinv31 = gmx_mm256_invsqrt_pd(rsq31);
332 rinv32 = gmx_mm256_invsqrt_pd(rsq32);
333 rinv33 = gmx_mm256_invsqrt_pd(rsq33);
335 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
336 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
337 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
338 rinvsq13 = _mm256_mul_pd(rinv13,rinv13);
339 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
340 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
341 rinvsq23 = _mm256_mul_pd(rinv23,rinv23);
342 rinvsq31 = _mm256_mul_pd(rinv31,rinv31);
343 rinvsq32 = _mm256_mul_pd(rinv32,rinv32);
344 rinvsq33 = _mm256_mul_pd(rinv33,rinv33);
346 fjx0 = _mm256_setzero_pd();
347 fjy0 = _mm256_setzero_pd();
348 fjz0 = _mm256_setzero_pd();
349 fjx1 = _mm256_setzero_pd();
350 fjy1 = _mm256_setzero_pd();
351 fjz1 = _mm256_setzero_pd();
352 fjx2 = _mm256_setzero_pd();
353 fjy2 = _mm256_setzero_pd();
354 fjz2 = _mm256_setzero_pd();
355 fjx3 = _mm256_setzero_pd();
356 fjy3 = _mm256_setzero_pd();
357 fjz3 = _mm256_setzero_pd();
359 /**************************
360 * CALCULATE INTERACTIONS *
361 **************************/
363 if (gmx_mm256_any_lt(rsq00,rcutoff2))
366 r00 = _mm256_mul_pd(rsq00,rinv00);
368 /* Analytical LJ-PME */
369 rinvsix = _mm256_mul_pd(_mm256_mul_pd(rinvsq00,rinvsq00),rinvsq00);
370 ewcljrsq = _mm256_mul_pd(ewclj2,rsq00);
371 ewclj6 = _mm256_mul_pd(ewclj2,_mm256_mul_pd(ewclj2,ewclj2));
372 exponent = gmx_simd_exp_d(ewcljrsq);
373 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
374 poly = _mm256_mul_pd(exponent,_mm256_add_pd(_mm256_sub_pd(one,ewcljrsq),_mm256_mul_pd(_mm256_mul_pd(ewcljrsq,ewcljrsq),one_half)));
375 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
376 vvdw6 = _mm256_mul_pd(_mm256_sub_pd(c6_00,_mm256_mul_pd(c6grid_00,_mm256_sub_pd(one,poly))),rinvsix);
377 vvdw12 = _mm256_mul_pd(c12_00,_mm256_mul_pd(rinvsix,rinvsix));
378 vvdw = _mm256_sub_pd(_mm256_mul_pd( _mm256_sub_pd(vvdw12 , _mm256_mul_pd(c12_00,_mm256_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
379 _mm256_mul_pd( _mm256_sub_pd(vvdw6,_mm256_add_pd(_mm256_mul_pd(c6_00,sh_vdw_invrcut6),_mm256_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
380 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
381 fvdw = _mm256_mul_pd(_mm256_sub_pd(vvdw12,_mm256_sub_pd(vvdw6,_mm256_mul_pd(_mm256_mul_pd(c6grid_00,one_sixth),_mm256_mul_pd(exponent,ewclj6)))),rinvsq00);
383 cutoff_mask = _mm256_cmp_pd(rsq00,rcutoff2,_CMP_LT_OQ);
385 /* Update potential sum for this i atom from the interaction with this j atom. */
386 vvdw = _mm256_and_pd(vvdw,cutoff_mask);
387 vvdwsum = _mm256_add_pd(vvdwsum,vvdw);
391 fscal = _mm256_and_pd(fscal,cutoff_mask);
393 /* Calculate temporary vectorial force */
394 tx = _mm256_mul_pd(fscal,dx00);
395 ty = _mm256_mul_pd(fscal,dy00);
396 tz = _mm256_mul_pd(fscal,dz00);
398 /* Update vectorial force */
399 fix0 = _mm256_add_pd(fix0,tx);
400 fiy0 = _mm256_add_pd(fiy0,ty);
401 fiz0 = _mm256_add_pd(fiz0,tz);
403 fjx0 = _mm256_add_pd(fjx0,tx);
404 fjy0 = _mm256_add_pd(fjy0,ty);
405 fjz0 = _mm256_add_pd(fjz0,tz);
409 /**************************
410 * CALCULATE INTERACTIONS *
411 **************************/
413 if (gmx_mm256_any_lt(rsq11,rcutoff2))
416 r11 = _mm256_mul_pd(rsq11,rinv11);
418 /* EWALD ELECTROSTATICS */
420 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
421 ewrt = _mm256_mul_pd(r11,ewtabscale);
422 ewitab = _mm256_cvttpd_epi32(ewrt);
423 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
424 ewitab = _mm_slli_epi32(ewitab,2);
425 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
426 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
427 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
428 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
429 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
430 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
431 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
432 velec = _mm256_mul_pd(qq11,_mm256_sub_pd(_mm256_sub_pd(rinv11,sh_ewald),velec));
433 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
435 cutoff_mask = _mm256_cmp_pd(rsq11,rcutoff2,_CMP_LT_OQ);
437 /* Update potential sum for this i atom from the interaction with this j atom. */
438 velec = _mm256_and_pd(velec,cutoff_mask);
439 velecsum = _mm256_add_pd(velecsum,velec);
443 fscal = _mm256_and_pd(fscal,cutoff_mask);
445 /* Calculate temporary vectorial force */
446 tx = _mm256_mul_pd(fscal,dx11);
447 ty = _mm256_mul_pd(fscal,dy11);
448 tz = _mm256_mul_pd(fscal,dz11);
450 /* Update vectorial force */
451 fix1 = _mm256_add_pd(fix1,tx);
452 fiy1 = _mm256_add_pd(fiy1,ty);
453 fiz1 = _mm256_add_pd(fiz1,tz);
455 fjx1 = _mm256_add_pd(fjx1,tx);
456 fjy1 = _mm256_add_pd(fjy1,ty);
457 fjz1 = _mm256_add_pd(fjz1,tz);
461 /**************************
462 * CALCULATE INTERACTIONS *
463 **************************/
465 if (gmx_mm256_any_lt(rsq12,rcutoff2))
468 r12 = _mm256_mul_pd(rsq12,rinv12);
470 /* EWALD ELECTROSTATICS */
472 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
473 ewrt = _mm256_mul_pd(r12,ewtabscale);
474 ewitab = _mm256_cvttpd_epi32(ewrt);
475 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
476 ewitab = _mm_slli_epi32(ewitab,2);
477 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
478 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
479 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
480 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
481 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
482 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
483 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
484 velec = _mm256_mul_pd(qq12,_mm256_sub_pd(_mm256_sub_pd(rinv12,sh_ewald),velec));
485 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
487 cutoff_mask = _mm256_cmp_pd(rsq12,rcutoff2,_CMP_LT_OQ);
489 /* Update potential sum for this i atom from the interaction with this j atom. */
490 velec = _mm256_and_pd(velec,cutoff_mask);
491 velecsum = _mm256_add_pd(velecsum,velec);
495 fscal = _mm256_and_pd(fscal,cutoff_mask);
497 /* Calculate temporary vectorial force */
498 tx = _mm256_mul_pd(fscal,dx12);
499 ty = _mm256_mul_pd(fscal,dy12);
500 tz = _mm256_mul_pd(fscal,dz12);
502 /* Update vectorial force */
503 fix1 = _mm256_add_pd(fix1,tx);
504 fiy1 = _mm256_add_pd(fiy1,ty);
505 fiz1 = _mm256_add_pd(fiz1,tz);
507 fjx2 = _mm256_add_pd(fjx2,tx);
508 fjy2 = _mm256_add_pd(fjy2,ty);
509 fjz2 = _mm256_add_pd(fjz2,tz);
513 /**************************
514 * CALCULATE INTERACTIONS *
515 **************************/
517 if (gmx_mm256_any_lt(rsq13,rcutoff2))
520 r13 = _mm256_mul_pd(rsq13,rinv13);
522 /* EWALD ELECTROSTATICS */
524 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
525 ewrt = _mm256_mul_pd(r13,ewtabscale);
526 ewitab = _mm256_cvttpd_epi32(ewrt);
527 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
528 ewitab = _mm_slli_epi32(ewitab,2);
529 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
530 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
531 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
532 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
533 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
534 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
535 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
536 velec = _mm256_mul_pd(qq13,_mm256_sub_pd(_mm256_sub_pd(rinv13,sh_ewald),velec));
537 felec = _mm256_mul_pd(_mm256_mul_pd(qq13,rinv13),_mm256_sub_pd(rinvsq13,felec));
539 cutoff_mask = _mm256_cmp_pd(rsq13,rcutoff2,_CMP_LT_OQ);
541 /* Update potential sum for this i atom from the interaction with this j atom. */
542 velec = _mm256_and_pd(velec,cutoff_mask);
543 velecsum = _mm256_add_pd(velecsum,velec);
547 fscal = _mm256_and_pd(fscal,cutoff_mask);
549 /* Calculate temporary vectorial force */
550 tx = _mm256_mul_pd(fscal,dx13);
551 ty = _mm256_mul_pd(fscal,dy13);
552 tz = _mm256_mul_pd(fscal,dz13);
554 /* Update vectorial force */
555 fix1 = _mm256_add_pd(fix1,tx);
556 fiy1 = _mm256_add_pd(fiy1,ty);
557 fiz1 = _mm256_add_pd(fiz1,tz);
559 fjx3 = _mm256_add_pd(fjx3,tx);
560 fjy3 = _mm256_add_pd(fjy3,ty);
561 fjz3 = _mm256_add_pd(fjz3,tz);
565 /**************************
566 * CALCULATE INTERACTIONS *
567 **************************/
569 if (gmx_mm256_any_lt(rsq21,rcutoff2))
572 r21 = _mm256_mul_pd(rsq21,rinv21);
574 /* EWALD ELECTROSTATICS */
576 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
577 ewrt = _mm256_mul_pd(r21,ewtabscale);
578 ewitab = _mm256_cvttpd_epi32(ewrt);
579 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
580 ewitab = _mm_slli_epi32(ewitab,2);
581 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
582 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
583 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
584 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
585 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
586 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
587 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
588 velec = _mm256_mul_pd(qq21,_mm256_sub_pd(_mm256_sub_pd(rinv21,sh_ewald),velec));
589 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
591 cutoff_mask = _mm256_cmp_pd(rsq21,rcutoff2,_CMP_LT_OQ);
593 /* Update potential sum for this i atom from the interaction with this j atom. */
594 velec = _mm256_and_pd(velec,cutoff_mask);
595 velecsum = _mm256_add_pd(velecsum,velec);
599 fscal = _mm256_and_pd(fscal,cutoff_mask);
601 /* Calculate temporary vectorial force */
602 tx = _mm256_mul_pd(fscal,dx21);
603 ty = _mm256_mul_pd(fscal,dy21);
604 tz = _mm256_mul_pd(fscal,dz21);
606 /* Update vectorial force */
607 fix2 = _mm256_add_pd(fix2,tx);
608 fiy2 = _mm256_add_pd(fiy2,ty);
609 fiz2 = _mm256_add_pd(fiz2,tz);
611 fjx1 = _mm256_add_pd(fjx1,tx);
612 fjy1 = _mm256_add_pd(fjy1,ty);
613 fjz1 = _mm256_add_pd(fjz1,tz);
617 /**************************
618 * CALCULATE INTERACTIONS *
619 **************************/
621 if (gmx_mm256_any_lt(rsq22,rcutoff2))
624 r22 = _mm256_mul_pd(rsq22,rinv22);
626 /* EWALD ELECTROSTATICS */
628 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
629 ewrt = _mm256_mul_pd(r22,ewtabscale);
630 ewitab = _mm256_cvttpd_epi32(ewrt);
631 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
632 ewitab = _mm_slli_epi32(ewitab,2);
633 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
634 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
635 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
636 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
637 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
638 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
639 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
640 velec = _mm256_mul_pd(qq22,_mm256_sub_pd(_mm256_sub_pd(rinv22,sh_ewald),velec));
641 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
643 cutoff_mask = _mm256_cmp_pd(rsq22,rcutoff2,_CMP_LT_OQ);
645 /* Update potential sum for this i atom from the interaction with this j atom. */
646 velec = _mm256_and_pd(velec,cutoff_mask);
647 velecsum = _mm256_add_pd(velecsum,velec);
651 fscal = _mm256_and_pd(fscal,cutoff_mask);
653 /* Calculate temporary vectorial force */
654 tx = _mm256_mul_pd(fscal,dx22);
655 ty = _mm256_mul_pd(fscal,dy22);
656 tz = _mm256_mul_pd(fscal,dz22);
658 /* Update vectorial force */
659 fix2 = _mm256_add_pd(fix2,tx);
660 fiy2 = _mm256_add_pd(fiy2,ty);
661 fiz2 = _mm256_add_pd(fiz2,tz);
663 fjx2 = _mm256_add_pd(fjx2,tx);
664 fjy2 = _mm256_add_pd(fjy2,ty);
665 fjz2 = _mm256_add_pd(fjz2,tz);
669 /**************************
670 * CALCULATE INTERACTIONS *
671 **************************/
673 if (gmx_mm256_any_lt(rsq23,rcutoff2))
676 r23 = _mm256_mul_pd(rsq23,rinv23);
678 /* EWALD ELECTROSTATICS */
680 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
681 ewrt = _mm256_mul_pd(r23,ewtabscale);
682 ewitab = _mm256_cvttpd_epi32(ewrt);
683 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
684 ewitab = _mm_slli_epi32(ewitab,2);
685 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
686 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
687 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
688 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
689 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
690 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
691 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
692 velec = _mm256_mul_pd(qq23,_mm256_sub_pd(_mm256_sub_pd(rinv23,sh_ewald),velec));
693 felec = _mm256_mul_pd(_mm256_mul_pd(qq23,rinv23),_mm256_sub_pd(rinvsq23,felec));
695 cutoff_mask = _mm256_cmp_pd(rsq23,rcutoff2,_CMP_LT_OQ);
697 /* Update potential sum for this i atom from the interaction with this j atom. */
698 velec = _mm256_and_pd(velec,cutoff_mask);
699 velecsum = _mm256_add_pd(velecsum,velec);
703 fscal = _mm256_and_pd(fscal,cutoff_mask);
705 /* Calculate temporary vectorial force */
706 tx = _mm256_mul_pd(fscal,dx23);
707 ty = _mm256_mul_pd(fscal,dy23);
708 tz = _mm256_mul_pd(fscal,dz23);
710 /* Update vectorial force */
711 fix2 = _mm256_add_pd(fix2,tx);
712 fiy2 = _mm256_add_pd(fiy2,ty);
713 fiz2 = _mm256_add_pd(fiz2,tz);
715 fjx3 = _mm256_add_pd(fjx3,tx);
716 fjy3 = _mm256_add_pd(fjy3,ty);
717 fjz3 = _mm256_add_pd(fjz3,tz);
721 /**************************
722 * CALCULATE INTERACTIONS *
723 **************************/
725 if (gmx_mm256_any_lt(rsq31,rcutoff2))
728 r31 = _mm256_mul_pd(rsq31,rinv31);
730 /* EWALD ELECTROSTATICS */
732 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
733 ewrt = _mm256_mul_pd(r31,ewtabscale);
734 ewitab = _mm256_cvttpd_epi32(ewrt);
735 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
736 ewitab = _mm_slli_epi32(ewitab,2);
737 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
738 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
739 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
740 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
741 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
742 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
743 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
744 velec = _mm256_mul_pd(qq31,_mm256_sub_pd(_mm256_sub_pd(rinv31,sh_ewald),velec));
745 felec = _mm256_mul_pd(_mm256_mul_pd(qq31,rinv31),_mm256_sub_pd(rinvsq31,felec));
747 cutoff_mask = _mm256_cmp_pd(rsq31,rcutoff2,_CMP_LT_OQ);
749 /* Update potential sum for this i atom from the interaction with this j atom. */
750 velec = _mm256_and_pd(velec,cutoff_mask);
751 velecsum = _mm256_add_pd(velecsum,velec);
755 fscal = _mm256_and_pd(fscal,cutoff_mask);
757 /* Calculate temporary vectorial force */
758 tx = _mm256_mul_pd(fscal,dx31);
759 ty = _mm256_mul_pd(fscal,dy31);
760 tz = _mm256_mul_pd(fscal,dz31);
762 /* Update vectorial force */
763 fix3 = _mm256_add_pd(fix3,tx);
764 fiy3 = _mm256_add_pd(fiy3,ty);
765 fiz3 = _mm256_add_pd(fiz3,tz);
767 fjx1 = _mm256_add_pd(fjx1,tx);
768 fjy1 = _mm256_add_pd(fjy1,ty);
769 fjz1 = _mm256_add_pd(fjz1,tz);
773 /**************************
774 * CALCULATE INTERACTIONS *
775 **************************/
777 if (gmx_mm256_any_lt(rsq32,rcutoff2))
780 r32 = _mm256_mul_pd(rsq32,rinv32);
782 /* EWALD ELECTROSTATICS */
784 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
785 ewrt = _mm256_mul_pd(r32,ewtabscale);
786 ewitab = _mm256_cvttpd_epi32(ewrt);
787 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
788 ewitab = _mm_slli_epi32(ewitab,2);
789 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
790 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
791 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
792 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
793 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
794 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
795 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
796 velec = _mm256_mul_pd(qq32,_mm256_sub_pd(_mm256_sub_pd(rinv32,sh_ewald),velec));
797 felec = _mm256_mul_pd(_mm256_mul_pd(qq32,rinv32),_mm256_sub_pd(rinvsq32,felec));
799 cutoff_mask = _mm256_cmp_pd(rsq32,rcutoff2,_CMP_LT_OQ);
801 /* Update potential sum for this i atom from the interaction with this j atom. */
802 velec = _mm256_and_pd(velec,cutoff_mask);
803 velecsum = _mm256_add_pd(velecsum,velec);
807 fscal = _mm256_and_pd(fscal,cutoff_mask);
809 /* Calculate temporary vectorial force */
810 tx = _mm256_mul_pd(fscal,dx32);
811 ty = _mm256_mul_pd(fscal,dy32);
812 tz = _mm256_mul_pd(fscal,dz32);
814 /* Update vectorial force */
815 fix3 = _mm256_add_pd(fix3,tx);
816 fiy3 = _mm256_add_pd(fiy3,ty);
817 fiz3 = _mm256_add_pd(fiz3,tz);
819 fjx2 = _mm256_add_pd(fjx2,tx);
820 fjy2 = _mm256_add_pd(fjy2,ty);
821 fjz2 = _mm256_add_pd(fjz2,tz);
825 /**************************
826 * CALCULATE INTERACTIONS *
827 **************************/
829 if (gmx_mm256_any_lt(rsq33,rcutoff2))
832 r33 = _mm256_mul_pd(rsq33,rinv33);
834 /* EWALD ELECTROSTATICS */
836 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
837 ewrt = _mm256_mul_pd(r33,ewtabscale);
838 ewitab = _mm256_cvttpd_epi32(ewrt);
839 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
840 ewitab = _mm_slli_epi32(ewitab,2);
841 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
842 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
843 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
844 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
845 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
846 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
847 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
848 velec = _mm256_mul_pd(qq33,_mm256_sub_pd(_mm256_sub_pd(rinv33,sh_ewald),velec));
849 felec = _mm256_mul_pd(_mm256_mul_pd(qq33,rinv33),_mm256_sub_pd(rinvsq33,felec));
851 cutoff_mask = _mm256_cmp_pd(rsq33,rcutoff2,_CMP_LT_OQ);
853 /* Update potential sum for this i atom from the interaction with this j atom. */
854 velec = _mm256_and_pd(velec,cutoff_mask);
855 velecsum = _mm256_add_pd(velecsum,velec);
859 fscal = _mm256_and_pd(fscal,cutoff_mask);
861 /* Calculate temporary vectorial force */
862 tx = _mm256_mul_pd(fscal,dx33);
863 ty = _mm256_mul_pd(fscal,dy33);
864 tz = _mm256_mul_pd(fscal,dz33);
866 /* Update vectorial force */
867 fix3 = _mm256_add_pd(fix3,tx);
868 fiy3 = _mm256_add_pd(fiy3,ty);
869 fiz3 = _mm256_add_pd(fiz3,tz);
871 fjx3 = _mm256_add_pd(fjx3,tx);
872 fjy3 = _mm256_add_pd(fjy3,ty);
873 fjz3 = _mm256_add_pd(fjz3,tz);
877 fjptrA = f+j_coord_offsetA;
878 fjptrB = f+j_coord_offsetB;
879 fjptrC = f+j_coord_offsetC;
880 fjptrD = f+j_coord_offsetD;
882 gmx_mm256_decrement_4rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
883 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
884 fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
886 /* Inner loop uses 479 flops */
892 /* Get j neighbor index, and coordinate index */
893 jnrlistA = jjnr[jidx];
894 jnrlistB = jjnr[jidx+1];
895 jnrlistC = jjnr[jidx+2];
896 jnrlistD = jjnr[jidx+3];
897 /* Sign of each element will be negative for non-real atoms.
898 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
899 * so use it as val = _mm_andnot_pd(mask,val) to clear dummy entries.
901 tmpmask0 = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
903 tmpmask1 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(3,3,2,2));
904 tmpmask0 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(1,1,0,0));
905 dummy_mask = _mm256_castps_pd(gmx_mm256_set_m128(tmpmask1,tmpmask0));
907 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
908 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
909 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
910 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
911 j_coord_offsetA = DIM*jnrA;
912 j_coord_offsetB = DIM*jnrB;
913 j_coord_offsetC = DIM*jnrC;
914 j_coord_offsetD = DIM*jnrD;
916 /* load j atom coordinates */
917 gmx_mm256_load_4rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
918 x+j_coord_offsetC,x+j_coord_offsetD,
919 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
920 &jy2,&jz2,&jx3,&jy3,&jz3);
922 /* Calculate displacement vector */
923 dx00 = _mm256_sub_pd(ix0,jx0);
924 dy00 = _mm256_sub_pd(iy0,jy0);
925 dz00 = _mm256_sub_pd(iz0,jz0);
926 dx11 = _mm256_sub_pd(ix1,jx1);
927 dy11 = _mm256_sub_pd(iy1,jy1);
928 dz11 = _mm256_sub_pd(iz1,jz1);
929 dx12 = _mm256_sub_pd(ix1,jx2);
930 dy12 = _mm256_sub_pd(iy1,jy2);
931 dz12 = _mm256_sub_pd(iz1,jz2);
932 dx13 = _mm256_sub_pd(ix1,jx3);
933 dy13 = _mm256_sub_pd(iy1,jy3);
934 dz13 = _mm256_sub_pd(iz1,jz3);
935 dx21 = _mm256_sub_pd(ix2,jx1);
936 dy21 = _mm256_sub_pd(iy2,jy1);
937 dz21 = _mm256_sub_pd(iz2,jz1);
938 dx22 = _mm256_sub_pd(ix2,jx2);
939 dy22 = _mm256_sub_pd(iy2,jy2);
940 dz22 = _mm256_sub_pd(iz2,jz2);
941 dx23 = _mm256_sub_pd(ix2,jx3);
942 dy23 = _mm256_sub_pd(iy2,jy3);
943 dz23 = _mm256_sub_pd(iz2,jz3);
944 dx31 = _mm256_sub_pd(ix3,jx1);
945 dy31 = _mm256_sub_pd(iy3,jy1);
946 dz31 = _mm256_sub_pd(iz3,jz1);
947 dx32 = _mm256_sub_pd(ix3,jx2);
948 dy32 = _mm256_sub_pd(iy3,jy2);
949 dz32 = _mm256_sub_pd(iz3,jz2);
950 dx33 = _mm256_sub_pd(ix3,jx3);
951 dy33 = _mm256_sub_pd(iy3,jy3);
952 dz33 = _mm256_sub_pd(iz3,jz3);
954 /* Calculate squared distance and things based on it */
955 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
956 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
957 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
958 rsq13 = gmx_mm256_calc_rsq_pd(dx13,dy13,dz13);
959 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
960 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
961 rsq23 = gmx_mm256_calc_rsq_pd(dx23,dy23,dz23);
962 rsq31 = gmx_mm256_calc_rsq_pd(dx31,dy31,dz31);
963 rsq32 = gmx_mm256_calc_rsq_pd(dx32,dy32,dz32);
964 rsq33 = gmx_mm256_calc_rsq_pd(dx33,dy33,dz33);
966 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
967 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
968 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
969 rinv13 = gmx_mm256_invsqrt_pd(rsq13);
970 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
971 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
972 rinv23 = gmx_mm256_invsqrt_pd(rsq23);
973 rinv31 = gmx_mm256_invsqrt_pd(rsq31);
974 rinv32 = gmx_mm256_invsqrt_pd(rsq32);
975 rinv33 = gmx_mm256_invsqrt_pd(rsq33);
977 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
978 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
979 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
980 rinvsq13 = _mm256_mul_pd(rinv13,rinv13);
981 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
982 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
983 rinvsq23 = _mm256_mul_pd(rinv23,rinv23);
984 rinvsq31 = _mm256_mul_pd(rinv31,rinv31);
985 rinvsq32 = _mm256_mul_pd(rinv32,rinv32);
986 rinvsq33 = _mm256_mul_pd(rinv33,rinv33);
988 fjx0 = _mm256_setzero_pd();
989 fjy0 = _mm256_setzero_pd();
990 fjz0 = _mm256_setzero_pd();
991 fjx1 = _mm256_setzero_pd();
992 fjy1 = _mm256_setzero_pd();
993 fjz1 = _mm256_setzero_pd();
994 fjx2 = _mm256_setzero_pd();
995 fjy2 = _mm256_setzero_pd();
996 fjz2 = _mm256_setzero_pd();
997 fjx3 = _mm256_setzero_pd();
998 fjy3 = _mm256_setzero_pd();
999 fjz3 = _mm256_setzero_pd();
1001 /**************************
1002 * CALCULATE INTERACTIONS *
1003 **************************/
1005 if (gmx_mm256_any_lt(rsq00,rcutoff2))
1008 r00 = _mm256_mul_pd(rsq00,rinv00);
1009 r00 = _mm256_andnot_pd(dummy_mask,r00);
1011 /* Analytical LJ-PME */
1012 rinvsix = _mm256_mul_pd(_mm256_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1013 ewcljrsq = _mm256_mul_pd(ewclj2,rsq00);
1014 ewclj6 = _mm256_mul_pd(ewclj2,_mm256_mul_pd(ewclj2,ewclj2));
1015 exponent = gmx_simd_exp_d(ewcljrsq);
1016 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1017 poly = _mm256_mul_pd(exponent,_mm256_add_pd(_mm256_sub_pd(one,ewcljrsq),_mm256_mul_pd(_mm256_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1018 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
1019 vvdw6 = _mm256_mul_pd(_mm256_sub_pd(c6_00,_mm256_mul_pd(c6grid_00,_mm256_sub_pd(one,poly))),rinvsix);
1020 vvdw12 = _mm256_mul_pd(c12_00,_mm256_mul_pd(rinvsix,rinvsix));
1021 vvdw = _mm256_sub_pd(_mm256_mul_pd( _mm256_sub_pd(vvdw12 , _mm256_mul_pd(c12_00,_mm256_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
1022 _mm256_mul_pd( _mm256_sub_pd(vvdw6,_mm256_add_pd(_mm256_mul_pd(c6_00,sh_vdw_invrcut6),_mm256_mul_pd(c6grid_00,sh_lj_ewald))),one_sixth));
1023 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
1024 fvdw = _mm256_mul_pd(_mm256_sub_pd(vvdw12,_mm256_sub_pd(vvdw6,_mm256_mul_pd(_mm256_mul_pd(c6grid_00,one_sixth),_mm256_mul_pd(exponent,ewclj6)))),rinvsq00);
1026 cutoff_mask = _mm256_cmp_pd(rsq00,rcutoff2,_CMP_LT_OQ);
1028 /* Update potential sum for this i atom from the interaction with this j atom. */
1029 vvdw = _mm256_and_pd(vvdw,cutoff_mask);
1030 vvdw = _mm256_andnot_pd(dummy_mask,vvdw);
1031 vvdwsum = _mm256_add_pd(vvdwsum,vvdw);
1035 fscal = _mm256_and_pd(fscal,cutoff_mask);
1037 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1039 /* Calculate temporary vectorial force */
1040 tx = _mm256_mul_pd(fscal,dx00);
1041 ty = _mm256_mul_pd(fscal,dy00);
1042 tz = _mm256_mul_pd(fscal,dz00);
1044 /* Update vectorial force */
1045 fix0 = _mm256_add_pd(fix0,tx);
1046 fiy0 = _mm256_add_pd(fiy0,ty);
1047 fiz0 = _mm256_add_pd(fiz0,tz);
1049 fjx0 = _mm256_add_pd(fjx0,tx);
1050 fjy0 = _mm256_add_pd(fjy0,ty);
1051 fjz0 = _mm256_add_pd(fjz0,tz);
1055 /**************************
1056 * CALCULATE INTERACTIONS *
1057 **************************/
1059 if (gmx_mm256_any_lt(rsq11,rcutoff2))
1062 r11 = _mm256_mul_pd(rsq11,rinv11);
1063 r11 = _mm256_andnot_pd(dummy_mask,r11);
1065 /* EWALD ELECTROSTATICS */
1067 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1068 ewrt = _mm256_mul_pd(r11,ewtabscale);
1069 ewitab = _mm256_cvttpd_epi32(ewrt);
1070 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1071 ewitab = _mm_slli_epi32(ewitab,2);
1072 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1073 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1074 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1075 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1076 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1077 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1078 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1079 velec = _mm256_mul_pd(qq11,_mm256_sub_pd(_mm256_sub_pd(rinv11,sh_ewald),velec));
1080 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
1082 cutoff_mask = _mm256_cmp_pd(rsq11,rcutoff2,_CMP_LT_OQ);
1084 /* Update potential sum for this i atom from the interaction with this j atom. */
1085 velec = _mm256_and_pd(velec,cutoff_mask);
1086 velec = _mm256_andnot_pd(dummy_mask,velec);
1087 velecsum = _mm256_add_pd(velecsum,velec);
1091 fscal = _mm256_and_pd(fscal,cutoff_mask);
1093 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1095 /* Calculate temporary vectorial force */
1096 tx = _mm256_mul_pd(fscal,dx11);
1097 ty = _mm256_mul_pd(fscal,dy11);
1098 tz = _mm256_mul_pd(fscal,dz11);
1100 /* Update vectorial force */
1101 fix1 = _mm256_add_pd(fix1,tx);
1102 fiy1 = _mm256_add_pd(fiy1,ty);
1103 fiz1 = _mm256_add_pd(fiz1,tz);
1105 fjx1 = _mm256_add_pd(fjx1,tx);
1106 fjy1 = _mm256_add_pd(fjy1,ty);
1107 fjz1 = _mm256_add_pd(fjz1,tz);
1111 /**************************
1112 * CALCULATE INTERACTIONS *
1113 **************************/
1115 if (gmx_mm256_any_lt(rsq12,rcutoff2))
1118 r12 = _mm256_mul_pd(rsq12,rinv12);
1119 r12 = _mm256_andnot_pd(dummy_mask,r12);
1121 /* EWALD ELECTROSTATICS */
1123 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1124 ewrt = _mm256_mul_pd(r12,ewtabscale);
1125 ewitab = _mm256_cvttpd_epi32(ewrt);
1126 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1127 ewitab = _mm_slli_epi32(ewitab,2);
1128 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1129 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1130 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1131 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1132 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1133 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1134 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1135 velec = _mm256_mul_pd(qq12,_mm256_sub_pd(_mm256_sub_pd(rinv12,sh_ewald),velec));
1136 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
1138 cutoff_mask = _mm256_cmp_pd(rsq12,rcutoff2,_CMP_LT_OQ);
1140 /* Update potential sum for this i atom from the interaction with this j atom. */
1141 velec = _mm256_and_pd(velec,cutoff_mask);
1142 velec = _mm256_andnot_pd(dummy_mask,velec);
1143 velecsum = _mm256_add_pd(velecsum,velec);
1147 fscal = _mm256_and_pd(fscal,cutoff_mask);
1149 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1151 /* Calculate temporary vectorial force */
1152 tx = _mm256_mul_pd(fscal,dx12);
1153 ty = _mm256_mul_pd(fscal,dy12);
1154 tz = _mm256_mul_pd(fscal,dz12);
1156 /* Update vectorial force */
1157 fix1 = _mm256_add_pd(fix1,tx);
1158 fiy1 = _mm256_add_pd(fiy1,ty);
1159 fiz1 = _mm256_add_pd(fiz1,tz);
1161 fjx2 = _mm256_add_pd(fjx2,tx);
1162 fjy2 = _mm256_add_pd(fjy2,ty);
1163 fjz2 = _mm256_add_pd(fjz2,tz);
1167 /**************************
1168 * CALCULATE INTERACTIONS *
1169 **************************/
1171 if (gmx_mm256_any_lt(rsq13,rcutoff2))
1174 r13 = _mm256_mul_pd(rsq13,rinv13);
1175 r13 = _mm256_andnot_pd(dummy_mask,r13);
1177 /* EWALD ELECTROSTATICS */
1179 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1180 ewrt = _mm256_mul_pd(r13,ewtabscale);
1181 ewitab = _mm256_cvttpd_epi32(ewrt);
1182 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1183 ewitab = _mm_slli_epi32(ewitab,2);
1184 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1185 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1186 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1187 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1188 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1189 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1190 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1191 velec = _mm256_mul_pd(qq13,_mm256_sub_pd(_mm256_sub_pd(rinv13,sh_ewald),velec));
1192 felec = _mm256_mul_pd(_mm256_mul_pd(qq13,rinv13),_mm256_sub_pd(rinvsq13,felec));
1194 cutoff_mask = _mm256_cmp_pd(rsq13,rcutoff2,_CMP_LT_OQ);
1196 /* Update potential sum for this i atom from the interaction with this j atom. */
1197 velec = _mm256_and_pd(velec,cutoff_mask);
1198 velec = _mm256_andnot_pd(dummy_mask,velec);
1199 velecsum = _mm256_add_pd(velecsum,velec);
1203 fscal = _mm256_and_pd(fscal,cutoff_mask);
1205 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1207 /* Calculate temporary vectorial force */
1208 tx = _mm256_mul_pd(fscal,dx13);
1209 ty = _mm256_mul_pd(fscal,dy13);
1210 tz = _mm256_mul_pd(fscal,dz13);
1212 /* Update vectorial force */
1213 fix1 = _mm256_add_pd(fix1,tx);
1214 fiy1 = _mm256_add_pd(fiy1,ty);
1215 fiz1 = _mm256_add_pd(fiz1,tz);
1217 fjx3 = _mm256_add_pd(fjx3,tx);
1218 fjy3 = _mm256_add_pd(fjy3,ty);
1219 fjz3 = _mm256_add_pd(fjz3,tz);
1223 /**************************
1224 * CALCULATE INTERACTIONS *
1225 **************************/
1227 if (gmx_mm256_any_lt(rsq21,rcutoff2))
1230 r21 = _mm256_mul_pd(rsq21,rinv21);
1231 r21 = _mm256_andnot_pd(dummy_mask,r21);
1233 /* EWALD ELECTROSTATICS */
1235 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1236 ewrt = _mm256_mul_pd(r21,ewtabscale);
1237 ewitab = _mm256_cvttpd_epi32(ewrt);
1238 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1239 ewitab = _mm_slli_epi32(ewitab,2);
1240 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1241 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1242 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1243 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1244 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1245 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1246 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1247 velec = _mm256_mul_pd(qq21,_mm256_sub_pd(_mm256_sub_pd(rinv21,sh_ewald),velec));
1248 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
1250 cutoff_mask = _mm256_cmp_pd(rsq21,rcutoff2,_CMP_LT_OQ);
1252 /* Update potential sum for this i atom from the interaction with this j atom. */
1253 velec = _mm256_and_pd(velec,cutoff_mask);
1254 velec = _mm256_andnot_pd(dummy_mask,velec);
1255 velecsum = _mm256_add_pd(velecsum,velec);
1259 fscal = _mm256_and_pd(fscal,cutoff_mask);
1261 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1263 /* Calculate temporary vectorial force */
1264 tx = _mm256_mul_pd(fscal,dx21);
1265 ty = _mm256_mul_pd(fscal,dy21);
1266 tz = _mm256_mul_pd(fscal,dz21);
1268 /* Update vectorial force */
1269 fix2 = _mm256_add_pd(fix2,tx);
1270 fiy2 = _mm256_add_pd(fiy2,ty);
1271 fiz2 = _mm256_add_pd(fiz2,tz);
1273 fjx1 = _mm256_add_pd(fjx1,tx);
1274 fjy1 = _mm256_add_pd(fjy1,ty);
1275 fjz1 = _mm256_add_pd(fjz1,tz);
1279 /**************************
1280 * CALCULATE INTERACTIONS *
1281 **************************/
1283 if (gmx_mm256_any_lt(rsq22,rcutoff2))
1286 r22 = _mm256_mul_pd(rsq22,rinv22);
1287 r22 = _mm256_andnot_pd(dummy_mask,r22);
1289 /* EWALD ELECTROSTATICS */
1291 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1292 ewrt = _mm256_mul_pd(r22,ewtabscale);
1293 ewitab = _mm256_cvttpd_epi32(ewrt);
1294 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1295 ewitab = _mm_slli_epi32(ewitab,2);
1296 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1297 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1298 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1299 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1300 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1301 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1302 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1303 velec = _mm256_mul_pd(qq22,_mm256_sub_pd(_mm256_sub_pd(rinv22,sh_ewald),velec));
1304 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
1306 cutoff_mask = _mm256_cmp_pd(rsq22,rcutoff2,_CMP_LT_OQ);
1308 /* Update potential sum for this i atom from the interaction with this j atom. */
1309 velec = _mm256_and_pd(velec,cutoff_mask);
1310 velec = _mm256_andnot_pd(dummy_mask,velec);
1311 velecsum = _mm256_add_pd(velecsum,velec);
1315 fscal = _mm256_and_pd(fscal,cutoff_mask);
1317 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1319 /* Calculate temporary vectorial force */
1320 tx = _mm256_mul_pd(fscal,dx22);
1321 ty = _mm256_mul_pd(fscal,dy22);
1322 tz = _mm256_mul_pd(fscal,dz22);
1324 /* Update vectorial force */
1325 fix2 = _mm256_add_pd(fix2,tx);
1326 fiy2 = _mm256_add_pd(fiy2,ty);
1327 fiz2 = _mm256_add_pd(fiz2,tz);
1329 fjx2 = _mm256_add_pd(fjx2,tx);
1330 fjy2 = _mm256_add_pd(fjy2,ty);
1331 fjz2 = _mm256_add_pd(fjz2,tz);
1335 /**************************
1336 * CALCULATE INTERACTIONS *
1337 **************************/
1339 if (gmx_mm256_any_lt(rsq23,rcutoff2))
1342 r23 = _mm256_mul_pd(rsq23,rinv23);
1343 r23 = _mm256_andnot_pd(dummy_mask,r23);
1345 /* EWALD ELECTROSTATICS */
1347 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1348 ewrt = _mm256_mul_pd(r23,ewtabscale);
1349 ewitab = _mm256_cvttpd_epi32(ewrt);
1350 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1351 ewitab = _mm_slli_epi32(ewitab,2);
1352 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1353 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1354 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1355 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1356 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1357 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1358 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1359 velec = _mm256_mul_pd(qq23,_mm256_sub_pd(_mm256_sub_pd(rinv23,sh_ewald),velec));
1360 felec = _mm256_mul_pd(_mm256_mul_pd(qq23,rinv23),_mm256_sub_pd(rinvsq23,felec));
1362 cutoff_mask = _mm256_cmp_pd(rsq23,rcutoff2,_CMP_LT_OQ);
1364 /* Update potential sum for this i atom from the interaction with this j atom. */
1365 velec = _mm256_and_pd(velec,cutoff_mask);
1366 velec = _mm256_andnot_pd(dummy_mask,velec);
1367 velecsum = _mm256_add_pd(velecsum,velec);
1371 fscal = _mm256_and_pd(fscal,cutoff_mask);
1373 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1375 /* Calculate temporary vectorial force */
1376 tx = _mm256_mul_pd(fscal,dx23);
1377 ty = _mm256_mul_pd(fscal,dy23);
1378 tz = _mm256_mul_pd(fscal,dz23);
1380 /* Update vectorial force */
1381 fix2 = _mm256_add_pd(fix2,tx);
1382 fiy2 = _mm256_add_pd(fiy2,ty);
1383 fiz2 = _mm256_add_pd(fiz2,tz);
1385 fjx3 = _mm256_add_pd(fjx3,tx);
1386 fjy3 = _mm256_add_pd(fjy3,ty);
1387 fjz3 = _mm256_add_pd(fjz3,tz);
1391 /**************************
1392 * CALCULATE INTERACTIONS *
1393 **************************/
1395 if (gmx_mm256_any_lt(rsq31,rcutoff2))
1398 r31 = _mm256_mul_pd(rsq31,rinv31);
1399 r31 = _mm256_andnot_pd(dummy_mask,r31);
1401 /* EWALD ELECTROSTATICS */
1403 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1404 ewrt = _mm256_mul_pd(r31,ewtabscale);
1405 ewitab = _mm256_cvttpd_epi32(ewrt);
1406 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1407 ewitab = _mm_slli_epi32(ewitab,2);
1408 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1409 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1410 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1411 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1412 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1413 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1414 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1415 velec = _mm256_mul_pd(qq31,_mm256_sub_pd(_mm256_sub_pd(rinv31,sh_ewald),velec));
1416 felec = _mm256_mul_pd(_mm256_mul_pd(qq31,rinv31),_mm256_sub_pd(rinvsq31,felec));
1418 cutoff_mask = _mm256_cmp_pd(rsq31,rcutoff2,_CMP_LT_OQ);
1420 /* Update potential sum for this i atom from the interaction with this j atom. */
1421 velec = _mm256_and_pd(velec,cutoff_mask);
1422 velec = _mm256_andnot_pd(dummy_mask,velec);
1423 velecsum = _mm256_add_pd(velecsum,velec);
1427 fscal = _mm256_and_pd(fscal,cutoff_mask);
1429 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1431 /* Calculate temporary vectorial force */
1432 tx = _mm256_mul_pd(fscal,dx31);
1433 ty = _mm256_mul_pd(fscal,dy31);
1434 tz = _mm256_mul_pd(fscal,dz31);
1436 /* Update vectorial force */
1437 fix3 = _mm256_add_pd(fix3,tx);
1438 fiy3 = _mm256_add_pd(fiy3,ty);
1439 fiz3 = _mm256_add_pd(fiz3,tz);
1441 fjx1 = _mm256_add_pd(fjx1,tx);
1442 fjy1 = _mm256_add_pd(fjy1,ty);
1443 fjz1 = _mm256_add_pd(fjz1,tz);
1447 /**************************
1448 * CALCULATE INTERACTIONS *
1449 **************************/
1451 if (gmx_mm256_any_lt(rsq32,rcutoff2))
1454 r32 = _mm256_mul_pd(rsq32,rinv32);
1455 r32 = _mm256_andnot_pd(dummy_mask,r32);
1457 /* EWALD ELECTROSTATICS */
1459 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1460 ewrt = _mm256_mul_pd(r32,ewtabscale);
1461 ewitab = _mm256_cvttpd_epi32(ewrt);
1462 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1463 ewitab = _mm_slli_epi32(ewitab,2);
1464 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1465 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1466 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1467 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1468 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1469 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1470 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1471 velec = _mm256_mul_pd(qq32,_mm256_sub_pd(_mm256_sub_pd(rinv32,sh_ewald),velec));
1472 felec = _mm256_mul_pd(_mm256_mul_pd(qq32,rinv32),_mm256_sub_pd(rinvsq32,felec));
1474 cutoff_mask = _mm256_cmp_pd(rsq32,rcutoff2,_CMP_LT_OQ);
1476 /* Update potential sum for this i atom from the interaction with this j atom. */
1477 velec = _mm256_and_pd(velec,cutoff_mask);
1478 velec = _mm256_andnot_pd(dummy_mask,velec);
1479 velecsum = _mm256_add_pd(velecsum,velec);
1483 fscal = _mm256_and_pd(fscal,cutoff_mask);
1485 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1487 /* Calculate temporary vectorial force */
1488 tx = _mm256_mul_pd(fscal,dx32);
1489 ty = _mm256_mul_pd(fscal,dy32);
1490 tz = _mm256_mul_pd(fscal,dz32);
1492 /* Update vectorial force */
1493 fix3 = _mm256_add_pd(fix3,tx);
1494 fiy3 = _mm256_add_pd(fiy3,ty);
1495 fiz3 = _mm256_add_pd(fiz3,tz);
1497 fjx2 = _mm256_add_pd(fjx2,tx);
1498 fjy2 = _mm256_add_pd(fjy2,ty);
1499 fjz2 = _mm256_add_pd(fjz2,tz);
1503 /**************************
1504 * CALCULATE INTERACTIONS *
1505 **************************/
1507 if (gmx_mm256_any_lt(rsq33,rcutoff2))
1510 r33 = _mm256_mul_pd(rsq33,rinv33);
1511 r33 = _mm256_andnot_pd(dummy_mask,r33);
1513 /* EWALD ELECTROSTATICS */
1515 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1516 ewrt = _mm256_mul_pd(r33,ewtabscale);
1517 ewitab = _mm256_cvttpd_epi32(ewrt);
1518 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1519 ewitab = _mm_slli_epi32(ewitab,2);
1520 ewtabF = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,0) );
1521 ewtabD = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,1) );
1522 ewtabV = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,2) );
1523 ewtabFn = _mm256_load_pd( ewtab + _mm_extract_epi32(ewitab,3) );
1524 GMX_MM256_FULLTRANSPOSE4_PD(ewtabF,ewtabD,ewtabV,ewtabFn);
1525 felec = _mm256_add_pd(ewtabF,_mm256_mul_pd(eweps,ewtabD));
1526 velec = _mm256_sub_pd(ewtabV,_mm256_mul_pd(_mm256_mul_pd(ewtabhalfspace,eweps),_mm256_add_pd(ewtabF,felec)));
1527 velec = _mm256_mul_pd(qq33,_mm256_sub_pd(_mm256_sub_pd(rinv33,sh_ewald),velec));
1528 felec = _mm256_mul_pd(_mm256_mul_pd(qq33,rinv33),_mm256_sub_pd(rinvsq33,felec));
1530 cutoff_mask = _mm256_cmp_pd(rsq33,rcutoff2,_CMP_LT_OQ);
1532 /* Update potential sum for this i atom from the interaction with this j atom. */
1533 velec = _mm256_and_pd(velec,cutoff_mask);
1534 velec = _mm256_andnot_pd(dummy_mask,velec);
1535 velecsum = _mm256_add_pd(velecsum,velec);
1539 fscal = _mm256_and_pd(fscal,cutoff_mask);
1541 fscal = _mm256_andnot_pd(dummy_mask,fscal);
1543 /* Calculate temporary vectorial force */
1544 tx = _mm256_mul_pd(fscal,dx33);
1545 ty = _mm256_mul_pd(fscal,dy33);
1546 tz = _mm256_mul_pd(fscal,dz33);
1548 /* Update vectorial force */
1549 fix3 = _mm256_add_pd(fix3,tx);
1550 fiy3 = _mm256_add_pd(fiy3,ty);
1551 fiz3 = _mm256_add_pd(fiz3,tz);
1553 fjx3 = _mm256_add_pd(fjx3,tx);
1554 fjy3 = _mm256_add_pd(fjy3,ty);
1555 fjz3 = _mm256_add_pd(fjz3,tz);
1559 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1560 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1561 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1562 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1564 gmx_mm256_decrement_4rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
1565 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
1566 fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1568 /* Inner loop uses 489 flops */
1571 /* End of innermost loop */
1573 gmx_mm256_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1574 f+i_coord_offset,fshift+i_shift_offset);
1577 /* Update potential energies */
1578 gmx_mm256_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1579 gmx_mm256_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1581 /* Increment number of inner iterations */
1582 inneriter += j_index_end - j_index_start;
1584 /* Outer loop uses 26 flops */
1587 /* Increment number of outer iterations */
1590 /* Update outer/inner flops */
1592 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_VF,outeriter*26 + inneriter*489);
1595 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_F_avx_256_double
1596 * Electrostatics interaction: Ewald
1597 * VdW interaction: LJEwald
1598 * Geometry: Water4-Water4
1599 * Calculate force/pot: Force
1602 nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_F_avx_256_double
1603 (t_nblist * gmx_restrict nlist,
1604 rvec * gmx_restrict xx,
1605 rvec * gmx_restrict ff,
1606 t_forcerec * gmx_restrict fr,
1607 t_mdatoms * gmx_restrict mdatoms,
1608 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1609 t_nrnb * gmx_restrict nrnb)
1611 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1612 * just 0 for non-waters.
1613 * Suffixes A,B,C,D refer to j loop unrolling done with AVX, e.g. for the four different
1614 * jnr indices corresponding to data put in the four positions in the SIMD register.
1616 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1617 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1618 int jnrA,jnrB,jnrC,jnrD;
1619 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1620 int jnrlistE,jnrlistF,jnrlistG,jnrlistH;
1621 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1622 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1623 real rcutoff_scalar;
1624 real *shiftvec,*fshift,*x,*f;
1625 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
1626 real scratch[4*DIM];
1627 __m256d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1628 real * vdwioffsetptr0;
1629 real * vdwgridioffsetptr0;
1630 __m256d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1631 real * vdwioffsetptr1;
1632 real * vdwgridioffsetptr1;
1633 __m256d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1634 real * vdwioffsetptr2;
1635 real * vdwgridioffsetptr2;
1636 __m256d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1637 real * vdwioffsetptr3;
1638 real * vdwgridioffsetptr3;
1639 __m256d ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
1640 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1641 __m256d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1642 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1643 __m256d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1644 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1645 __m256d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1646 int vdwjidx3A,vdwjidx3B,vdwjidx3C,vdwjidx3D;
1647 __m256d jx3,jy3,jz3,fjx3,fjy3,fjz3,jq3,isaj3;
1648 __m256d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1649 __m256d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1650 __m256d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1651 __m256d dx13,dy13,dz13,rsq13,rinv13,rinvsq13,r13,qq13,c6_13,c12_13;
1652 __m256d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1653 __m256d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1654 __m256d dx23,dy23,dz23,rsq23,rinv23,rinvsq23,r23,qq23,c6_23,c12_23;
1655 __m256d dx31,dy31,dz31,rsq31,rinv31,rinvsq31,r31,qq31,c6_31,c12_31;
1656 __m256d dx32,dy32,dz32,rsq32,rinv32,rinvsq32,r32,qq32,c6_32,c12_32;
1657 __m256d dx33,dy33,dz33,rsq33,rinv33,rinvsq33,r33,qq33,c6_33,c12_33;
1658 __m256d velec,felec,velecsum,facel,crf,krf,krf2;
1661 __m256d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1664 __m256d one_sixth = _mm256_set1_pd(1.0/6.0);
1665 __m256d one_twelfth = _mm256_set1_pd(1.0/12.0);
1677 __m256d ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
1678 __m256d one_half = _mm256_set1_pd(0.5);
1679 __m256d minus_one = _mm256_set1_pd(-1.0);
1681 __m256d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1682 __m256d beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
1684 __m256d dummy_mask,cutoff_mask;
1685 __m128 tmpmask0,tmpmask1;
1686 __m256d signbit = _mm256_castsi256_pd( _mm256_set1_epi32(0x80000000) );
1687 __m256d one = _mm256_set1_pd(1.0);
1688 __m256d two = _mm256_set1_pd(2.0);
1694 jindex = nlist->jindex;
1696 shiftidx = nlist->shift;
1698 shiftvec = fr->shift_vec[0];
1699 fshift = fr->fshift[0];
1700 facel = _mm256_set1_pd(fr->epsfac);
1701 charge = mdatoms->chargeA;
1702 nvdwtype = fr->ntype;
1703 vdwparam = fr->nbfp;
1704 vdwtype = mdatoms->typeA;
1705 vdwgridparam = fr->ljpme_c6grid;
1706 sh_lj_ewald = _mm256_set1_pd(fr->ic->sh_lj_ewald);
1707 ewclj = _mm256_set1_pd(fr->ewaldcoeff_lj);
1708 ewclj2 = _mm256_mul_pd(minus_one,_mm256_mul_pd(ewclj,ewclj));
1710 sh_ewald = _mm256_set1_pd(fr->ic->sh_ewald);
1711 beta = _mm256_set1_pd(fr->ic->ewaldcoeff_q);
1712 beta2 = _mm256_mul_pd(beta,beta);
1713 beta3 = _mm256_mul_pd(beta,beta2);
1715 ewtab = fr->ic->tabq_coul_F;
1716 ewtabscale = _mm256_set1_pd(fr->ic->tabq_scale);
1717 ewtabhalfspace = _mm256_set1_pd(0.5/fr->ic->tabq_scale);
1719 /* Setup water-specific parameters */
1720 inr = nlist->iinr[0];
1721 iq1 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+1]));
1722 iq2 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+2]));
1723 iq3 = _mm256_mul_pd(facel,_mm256_set1_pd(charge[inr+3]));
1724 vdwioffsetptr0 = vdwparam+2*nvdwtype*vdwtype[inr+0];
1725 vdwgridioffsetptr0 = vdwgridparam+2*nvdwtype*vdwtype[inr+0];
1727 jq1 = _mm256_set1_pd(charge[inr+1]);
1728 jq2 = _mm256_set1_pd(charge[inr+2]);
1729 jq3 = _mm256_set1_pd(charge[inr+3]);
1730 vdwjidx0A = 2*vdwtype[inr+0];
1731 c6_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A]);
1732 c12_00 = _mm256_set1_pd(vdwioffsetptr0[vdwjidx0A+1]);
1733 c6grid_00 = _mm256_set1_pd(vdwgridioffsetptr0[vdwjidx0A]);
1734 qq11 = _mm256_mul_pd(iq1,jq1);
1735 qq12 = _mm256_mul_pd(iq1,jq2);
1736 qq13 = _mm256_mul_pd(iq1,jq3);
1737 qq21 = _mm256_mul_pd(iq2,jq1);
1738 qq22 = _mm256_mul_pd(iq2,jq2);
1739 qq23 = _mm256_mul_pd(iq2,jq3);
1740 qq31 = _mm256_mul_pd(iq3,jq1);
1741 qq32 = _mm256_mul_pd(iq3,jq2);
1742 qq33 = _mm256_mul_pd(iq3,jq3);
1744 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
1745 rcutoff_scalar = fr->rcoulomb;
1746 rcutoff = _mm256_set1_pd(rcutoff_scalar);
1747 rcutoff2 = _mm256_mul_pd(rcutoff,rcutoff);
1749 sh_vdw_invrcut6 = _mm256_set1_pd(fr->ic->sh_invrc6);
1750 rvdw = _mm256_set1_pd(fr->rvdw);
1752 /* Avoid stupid compiler warnings */
1753 jnrA = jnrB = jnrC = jnrD = 0;
1754 j_coord_offsetA = 0;
1755 j_coord_offsetB = 0;
1756 j_coord_offsetC = 0;
1757 j_coord_offsetD = 0;
1762 for(iidx=0;iidx<4*DIM;iidx++)
1764 scratch[iidx] = 0.0;
1767 /* Start outer loop over neighborlists */
1768 for(iidx=0; iidx<nri; iidx++)
1770 /* Load shift vector for this list */
1771 i_shift_offset = DIM*shiftidx[iidx];
1773 /* Load limits for loop over neighbors */
1774 j_index_start = jindex[iidx];
1775 j_index_end = jindex[iidx+1];
1777 /* Get outer coordinate index */
1779 i_coord_offset = DIM*inr;
1781 /* Load i particle coords and add shift vector */
1782 gmx_mm256_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
1783 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
1785 fix0 = _mm256_setzero_pd();
1786 fiy0 = _mm256_setzero_pd();
1787 fiz0 = _mm256_setzero_pd();
1788 fix1 = _mm256_setzero_pd();
1789 fiy1 = _mm256_setzero_pd();
1790 fiz1 = _mm256_setzero_pd();
1791 fix2 = _mm256_setzero_pd();
1792 fiy2 = _mm256_setzero_pd();
1793 fiz2 = _mm256_setzero_pd();
1794 fix3 = _mm256_setzero_pd();
1795 fiy3 = _mm256_setzero_pd();
1796 fiz3 = _mm256_setzero_pd();
1798 /* Start inner kernel loop */
1799 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1802 /* Get j neighbor index, and coordinate index */
1804 jnrB = jjnr[jidx+1];
1805 jnrC = jjnr[jidx+2];
1806 jnrD = jjnr[jidx+3];
1807 j_coord_offsetA = DIM*jnrA;
1808 j_coord_offsetB = DIM*jnrB;
1809 j_coord_offsetC = DIM*jnrC;
1810 j_coord_offsetD = DIM*jnrD;
1812 /* load j atom coordinates */
1813 gmx_mm256_load_4rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
1814 x+j_coord_offsetC,x+j_coord_offsetD,
1815 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
1816 &jy2,&jz2,&jx3,&jy3,&jz3);
1818 /* Calculate displacement vector */
1819 dx00 = _mm256_sub_pd(ix0,jx0);
1820 dy00 = _mm256_sub_pd(iy0,jy0);
1821 dz00 = _mm256_sub_pd(iz0,jz0);
1822 dx11 = _mm256_sub_pd(ix1,jx1);
1823 dy11 = _mm256_sub_pd(iy1,jy1);
1824 dz11 = _mm256_sub_pd(iz1,jz1);
1825 dx12 = _mm256_sub_pd(ix1,jx2);
1826 dy12 = _mm256_sub_pd(iy1,jy2);
1827 dz12 = _mm256_sub_pd(iz1,jz2);
1828 dx13 = _mm256_sub_pd(ix1,jx3);
1829 dy13 = _mm256_sub_pd(iy1,jy3);
1830 dz13 = _mm256_sub_pd(iz1,jz3);
1831 dx21 = _mm256_sub_pd(ix2,jx1);
1832 dy21 = _mm256_sub_pd(iy2,jy1);
1833 dz21 = _mm256_sub_pd(iz2,jz1);
1834 dx22 = _mm256_sub_pd(ix2,jx2);
1835 dy22 = _mm256_sub_pd(iy2,jy2);
1836 dz22 = _mm256_sub_pd(iz2,jz2);
1837 dx23 = _mm256_sub_pd(ix2,jx3);
1838 dy23 = _mm256_sub_pd(iy2,jy3);
1839 dz23 = _mm256_sub_pd(iz2,jz3);
1840 dx31 = _mm256_sub_pd(ix3,jx1);
1841 dy31 = _mm256_sub_pd(iy3,jy1);
1842 dz31 = _mm256_sub_pd(iz3,jz1);
1843 dx32 = _mm256_sub_pd(ix3,jx2);
1844 dy32 = _mm256_sub_pd(iy3,jy2);
1845 dz32 = _mm256_sub_pd(iz3,jz2);
1846 dx33 = _mm256_sub_pd(ix3,jx3);
1847 dy33 = _mm256_sub_pd(iy3,jy3);
1848 dz33 = _mm256_sub_pd(iz3,jz3);
1850 /* Calculate squared distance and things based on it */
1851 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
1852 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
1853 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
1854 rsq13 = gmx_mm256_calc_rsq_pd(dx13,dy13,dz13);
1855 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
1856 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
1857 rsq23 = gmx_mm256_calc_rsq_pd(dx23,dy23,dz23);
1858 rsq31 = gmx_mm256_calc_rsq_pd(dx31,dy31,dz31);
1859 rsq32 = gmx_mm256_calc_rsq_pd(dx32,dy32,dz32);
1860 rsq33 = gmx_mm256_calc_rsq_pd(dx33,dy33,dz33);
1862 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
1863 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
1864 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
1865 rinv13 = gmx_mm256_invsqrt_pd(rsq13);
1866 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
1867 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
1868 rinv23 = gmx_mm256_invsqrt_pd(rsq23);
1869 rinv31 = gmx_mm256_invsqrt_pd(rsq31);
1870 rinv32 = gmx_mm256_invsqrt_pd(rsq32);
1871 rinv33 = gmx_mm256_invsqrt_pd(rsq33);
1873 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
1874 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
1875 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
1876 rinvsq13 = _mm256_mul_pd(rinv13,rinv13);
1877 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
1878 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
1879 rinvsq23 = _mm256_mul_pd(rinv23,rinv23);
1880 rinvsq31 = _mm256_mul_pd(rinv31,rinv31);
1881 rinvsq32 = _mm256_mul_pd(rinv32,rinv32);
1882 rinvsq33 = _mm256_mul_pd(rinv33,rinv33);
1884 fjx0 = _mm256_setzero_pd();
1885 fjy0 = _mm256_setzero_pd();
1886 fjz0 = _mm256_setzero_pd();
1887 fjx1 = _mm256_setzero_pd();
1888 fjy1 = _mm256_setzero_pd();
1889 fjz1 = _mm256_setzero_pd();
1890 fjx2 = _mm256_setzero_pd();
1891 fjy2 = _mm256_setzero_pd();
1892 fjz2 = _mm256_setzero_pd();
1893 fjx3 = _mm256_setzero_pd();
1894 fjy3 = _mm256_setzero_pd();
1895 fjz3 = _mm256_setzero_pd();
1897 /**************************
1898 * CALCULATE INTERACTIONS *
1899 **************************/
1901 if (gmx_mm256_any_lt(rsq00,rcutoff2))
1904 r00 = _mm256_mul_pd(rsq00,rinv00);
1906 /* Analytical LJ-PME */
1907 rinvsix = _mm256_mul_pd(_mm256_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1908 ewcljrsq = _mm256_mul_pd(ewclj2,rsq00);
1909 ewclj6 = _mm256_mul_pd(ewclj2,_mm256_mul_pd(ewclj2,ewclj2));
1910 exponent = gmx_simd_exp_d(ewcljrsq);
1911 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1912 poly = _mm256_mul_pd(exponent,_mm256_add_pd(_mm256_sub_pd(one,ewcljrsq),_mm256_mul_pd(_mm256_mul_pd(ewcljrsq,ewcljrsq),one_half)));
1913 /* f6A = 6 * C6grid * (1 - poly) */
1914 f6A = _mm256_mul_pd(c6grid_00,_mm256_sub_pd(one,poly));
1915 /* f6B = C6grid * exponent * beta^6 */
1916 f6B = _mm256_mul_pd(_mm256_mul_pd(c6grid_00,one_sixth),_mm256_mul_pd(exponent,ewclj6));
1917 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1918 fvdw = _mm256_mul_pd(_mm256_add_pd(_mm256_mul_pd(_mm256_sub_pd(_mm256_mul_pd(c12_00,rinvsix),_mm256_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1920 cutoff_mask = _mm256_cmp_pd(rsq00,rcutoff2,_CMP_LT_OQ);
1924 fscal = _mm256_and_pd(fscal,cutoff_mask);
1926 /* Calculate temporary vectorial force */
1927 tx = _mm256_mul_pd(fscal,dx00);
1928 ty = _mm256_mul_pd(fscal,dy00);
1929 tz = _mm256_mul_pd(fscal,dz00);
1931 /* Update vectorial force */
1932 fix0 = _mm256_add_pd(fix0,tx);
1933 fiy0 = _mm256_add_pd(fiy0,ty);
1934 fiz0 = _mm256_add_pd(fiz0,tz);
1936 fjx0 = _mm256_add_pd(fjx0,tx);
1937 fjy0 = _mm256_add_pd(fjy0,ty);
1938 fjz0 = _mm256_add_pd(fjz0,tz);
1942 /**************************
1943 * CALCULATE INTERACTIONS *
1944 **************************/
1946 if (gmx_mm256_any_lt(rsq11,rcutoff2))
1949 r11 = _mm256_mul_pd(rsq11,rinv11);
1951 /* EWALD ELECTROSTATICS */
1953 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1954 ewrt = _mm256_mul_pd(r11,ewtabscale);
1955 ewitab = _mm256_cvttpd_epi32(ewrt);
1956 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
1957 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
1958 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
1960 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
1961 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
1963 cutoff_mask = _mm256_cmp_pd(rsq11,rcutoff2,_CMP_LT_OQ);
1967 fscal = _mm256_and_pd(fscal,cutoff_mask);
1969 /* Calculate temporary vectorial force */
1970 tx = _mm256_mul_pd(fscal,dx11);
1971 ty = _mm256_mul_pd(fscal,dy11);
1972 tz = _mm256_mul_pd(fscal,dz11);
1974 /* Update vectorial force */
1975 fix1 = _mm256_add_pd(fix1,tx);
1976 fiy1 = _mm256_add_pd(fiy1,ty);
1977 fiz1 = _mm256_add_pd(fiz1,tz);
1979 fjx1 = _mm256_add_pd(fjx1,tx);
1980 fjy1 = _mm256_add_pd(fjy1,ty);
1981 fjz1 = _mm256_add_pd(fjz1,tz);
1985 /**************************
1986 * CALCULATE INTERACTIONS *
1987 **************************/
1989 if (gmx_mm256_any_lt(rsq12,rcutoff2))
1992 r12 = _mm256_mul_pd(rsq12,rinv12);
1994 /* EWALD ELECTROSTATICS */
1996 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1997 ewrt = _mm256_mul_pd(r12,ewtabscale);
1998 ewitab = _mm256_cvttpd_epi32(ewrt);
1999 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2000 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2001 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2003 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2004 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
2006 cutoff_mask = _mm256_cmp_pd(rsq12,rcutoff2,_CMP_LT_OQ);
2010 fscal = _mm256_and_pd(fscal,cutoff_mask);
2012 /* Calculate temporary vectorial force */
2013 tx = _mm256_mul_pd(fscal,dx12);
2014 ty = _mm256_mul_pd(fscal,dy12);
2015 tz = _mm256_mul_pd(fscal,dz12);
2017 /* Update vectorial force */
2018 fix1 = _mm256_add_pd(fix1,tx);
2019 fiy1 = _mm256_add_pd(fiy1,ty);
2020 fiz1 = _mm256_add_pd(fiz1,tz);
2022 fjx2 = _mm256_add_pd(fjx2,tx);
2023 fjy2 = _mm256_add_pd(fjy2,ty);
2024 fjz2 = _mm256_add_pd(fjz2,tz);
2028 /**************************
2029 * CALCULATE INTERACTIONS *
2030 **************************/
2032 if (gmx_mm256_any_lt(rsq13,rcutoff2))
2035 r13 = _mm256_mul_pd(rsq13,rinv13);
2037 /* EWALD ELECTROSTATICS */
2039 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2040 ewrt = _mm256_mul_pd(r13,ewtabscale);
2041 ewitab = _mm256_cvttpd_epi32(ewrt);
2042 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2043 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2044 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2046 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2047 felec = _mm256_mul_pd(_mm256_mul_pd(qq13,rinv13),_mm256_sub_pd(rinvsq13,felec));
2049 cutoff_mask = _mm256_cmp_pd(rsq13,rcutoff2,_CMP_LT_OQ);
2053 fscal = _mm256_and_pd(fscal,cutoff_mask);
2055 /* Calculate temporary vectorial force */
2056 tx = _mm256_mul_pd(fscal,dx13);
2057 ty = _mm256_mul_pd(fscal,dy13);
2058 tz = _mm256_mul_pd(fscal,dz13);
2060 /* Update vectorial force */
2061 fix1 = _mm256_add_pd(fix1,tx);
2062 fiy1 = _mm256_add_pd(fiy1,ty);
2063 fiz1 = _mm256_add_pd(fiz1,tz);
2065 fjx3 = _mm256_add_pd(fjx3,tx);
2066 fjy3 = _mm256_add_pd(fjy3,ty);
2067 fjz3 = _mm256_add_pd(fjz3,tz);
2071 /**************************
2072 * CALCULATE INTERACTIONS *
2073 **************************/
2075 if (gmx_mm256_any_lt(rsq21,rcutoff2))
2078 r21 = _mm256_mul_pd(rsq21,rinv21);
2080 /* EWALD ELECTROSTATICS */
2082 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2083 ewrt = _mm256_mul_pd(r21,ewtabscale);
2084 ewitab = _mm256_cvttpd_epi32(ewrt);
2085 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2086 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2087 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2089 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2090 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
2092 cutoff_mask = _mm256_cmp_pd(rsq21,rcutoff2,_CMP_LT_OQ);
2096 fscal = _mm256_and_pd(fscal,cutoff_mask);
2098 /* Calculate temporary vectorial force */
2099 tx = _mm256_mul_pd(fscal,dx21);
2100 ty = _mm256_mul_pd(fscal,dy21);
2101 tz = _mm256_mul_pd(fscal,dz21);
2103 /* Update vectorial force */
2104 fix2 = _mm256_add_pd(fix2,tx);
2105 fiy2 = _mm256_add_pd(fiy2,ty);
2106 fiz2 = _mm256_add_pd(fiz2,tz);
2108 fjx1 = _mm256_add_pd(fjx1,tx);
2109 fjy1 = _mm256_add_pd(fjy1,ty);
2110 fjz1 = _mm256_add_pd(fjz1,tz);
2114 /**************************
2115 * CALCULATE INTERACTIONS *
2116 **************************/
2118 if (gmx_mm256_any_lt(rsq22,rcutoff2))
2121 r22 = _mm256_mul_pd(rsq22,rinv22);
2123 /* EWALD ELECTROSTATICS */
2125 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2126 ewrt = _mm256_mul_pd(r22,ewtabscale);
2127 ewitab = _mm256_cvttpd_epi32(ewrt);
2128 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2129 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2130 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2132 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2133 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
2135 cutoff_mask = _mm256_cmp_pd(rsq22,rcutoff2,_CMP_LT_OQ);
2139 fscal = _mm256_and_pd(fscal,cutoff_mask);
2141 /* Calculate temporary vectorial force */
2142 tx = _mm256_mul_pd(fscal,dx22);
2143 ty = _mm256_mul_pd(fscal,dy22);
2144 tz = _mm256_mul_pd(fscal,dz22);
2146 /* Update vectorial force */
2147 fix2 = _mm256_add_pd(fix2,tx);
2148 fiy2 = _mm256_add_pd(fiy2,ty);
2149 fiz2 = _mm256_add_pd(fiz2,tz);
2151 fjx2 = _mm256_add_pd(fjx2,tx);
2152 fjy2 = _mm256_add_pd(fjy2,ty);
2153 fjz2 = _mm256_add_pd(fjz2,tz);
2157 /**************************
2158 * CALCULATE INTERACTIONS *
2159 **************************/
2161 if (gmx_mm256_any_lt(rsq23,rcutoff2))
2164 r23 = _mm256_mul_pd(rsq23,rinv23);
2166 /* EWALD ELECTROSTATICS */
2168 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2169 ewrt = _mm256_mul_pd(r23,ewtabscale);
2170 ewitab = _mm256_cvttpd_epi32(ewrt);
2171 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2172 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2173 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2175 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2176 felec = _mm256_mul_pd(_mm256_mul_pd(qq23,rinv23),_mm256_sub_pd(rinvsq23,felec));
2178 cutoff_mask = _mm256_cmp_pd(rsq23,rcutoff2,_CMP_LT_OQ);
2182 fscal = _mm256_and_pd(fscal,cutoff_mask);
2184 /* Calculate temporary vectorial force */
2185 tx = _mm256_mul_pd(fscal,dx23);
2186 ty = _mm256_mul_pd(fscal,dy23);
2187 tz = _mm256_mul_pd(fscal,dz23);
2189 /* Update vectorial force */
2190 fix2 = _mm256_add_pd(fix2,tx);
2191 fiy2 = _mm256_add_pd(fiy2,ty);
2192 fiz2 = _mm256_add_pd(fiz2,tz);
2194 fjx3 = _mm256_add_pd(fjx3,tx);
2195 fjy3 = _mm256_add_pd(fjy3,ty);
2196 fjz3 = _mm256_add_pd(fjz3,tz);
2200 /**************************
2201 * CALCULATE INTERACTIONS *
2202 **************************/
2204 if (gmx_mm256_any_lt(rsq31,rcutoff2))
2207 r31 = _mm256_mul_pd(rsq31,rinv31);
2209 /* EWALD ELECTROSTATICS */
2211 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2212 ewrt = _mm256_mul_pd(r31,ewtabscale);
2213 ewitab = _mm256_cvttpd_epi32(ewrt);
2214 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2215 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2216 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2218 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2219 felec = _mm256_mul_pd(_mm256_mul_pd(qq31,rinv31),_mm256_sub_pd(rinvsq31,felec));
2221 cutoff_mask = _mm256_cmp_pd(rsq31,rcutoff2,_CMP_LT_OQ);
2225 fscal = _mm256_and_pd(fscal,cutoff_mask);
2227 /* Calculate temporary vectorial force */
2228 tx = _mm256_mul_pd(fscal,dx31);
2229 ty = _mm256_mul_pd(fscal,dy31);
2230 tz = _mm256_mul_pd(fscal,dz31);
2232 /* Update vectorial force */
2233 fix3 = _mm256_add_pd(fix3,tx);
2234 fiy3 = _mm256_add_pd(fiy3,ty);
2235 fiz3 = _mm256_add_pd(fiz3,tz);
2237 fjx1 = _mm256_add_pd(fjx1,tx);
2238 fjy1 = _mm256_add_pd(fjy1,ty);
2239 fjz1 = _mm256_add_pd(fjz1,tz);
2243 /**************************
2244 * CALCULATE INTERACTIONS *
2245 **************************/
2247 if (gmx_mm256_any_lt(rsq32,rcutoff2))
2250 r32 = _mm256_mul_pd(rsq32,rinv32);
2252 /* EWALD ELECTROSTATICS */
2254 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2255 ewrt = _mm256_mul_pd(r32,ewtabscale);
2256 ewitab = _mm256_cvttpd_epi32(ewrt);
2257 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2258 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2259 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2261 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2262 felec = _mm256_mul_pd(_mm256_mul_pd(qq32,rinv32),_mm256_sub_pd(rinvsq32,felec));
2264 cutoff_mask = _mm256_cmp_pd(rsq32,rcutoff2,_CMP_LT_OQ);
2268 fscal = _mm256_and_pd(fscal,cutoff_mask);
2270 /* Calculate temporary vectorial force */
2271 tx = _mm256_mul_pd(fscal,dx32);
2272 ty = _mm256_mul_pd(fscal,dy32);
2273 tz = _mm256_mul_pd(fscal,dz32);
2275 /* Update vectorial force */
2276 fix3 = _mm256_add_pd(fix3,tx);
2277 fiy3 = _mm256_add_pd(fiy3,ty);
2278 fiz3 = _mm256_add_pd(fiz3,tz);
2280 fjx2 = _mm256_add_pd(fjx2,tx);
2281 fjy2 = _mm256_add_pd(fjy2,ty);
2282 fjz2 = _mm256_add_pd(fjz2,tz);
2286 /**************************
2287 * CALCULATE INTERACTIONS *
2288 **************************/
2290 if (gmx_mm256_any_lt(rsq33,rcutoff2))
2293 r33 = _mm256_mul_pd(rsq33,rinv33);
2295 /* EWALD ELECTROSTATICS */
2297 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2298 ewrt = _mm256_mul_pd(r33,ewtabscale);
2299 ewitab = _mm256_cvttpd_epi32(ewrt);
2300 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2301 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2302 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2304 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2305 felec = _mm256_mul_pd(_mm256_mul_pd(qq33,rinv33),_mm256_sub_pd(rinvsq33,felec));
2307 cutoff_mask = _mm256_cmp_pd(rsq33,rcutoff2,_CMP_LT_OQ);
2311 fscal = _mm256_and_pd(fscal,cutoff_mask);
2313 /* Calculate temporary vectorial force */
2314 tx = _mm256_mul_pd(fscal,dx33);
2315 ty = _mm256_mul_pd(fscal,dy33);
2316 tz = _mm256_mul_pd(fscal,dz33);
2318 /* Update vectorial force */
2319 fix3 = _mm256_add_pd(fix3,tx);
2320 fiy3 = _mm256_add_pd(fiy3,ty);
2321 fiz3 = _mm256_add_pd(fiz3,tz);
2323 fjx3 = _mm256_add_pd(fjx3,tx);
2324 fjy3 = _mm256_add_pd(fjy3,ty);
2325 fjz3 = _mm256_add_pd(fjz3,tz);
2329 fjptrA = f+j_coord_offsetA;
2330 fjptrB = f+j_coord_offsetB;
2331 fjptrC = f+j_coord_offsetC;
2332 fjptrD = f+j_coord_offsetD;
2334 gmx_mm256_decrement_4rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
2335 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
2336 fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
2338 /* Inner loop uses 403 flops */
2341 if(jidx<j_index_end)
2344 /* Get j neighbor index, and coordinate index */
2345 jnrlistA = jjnr[jidx];
2346 jnrlistB = jjnr[jidx+1];
2347 jnrlistC = jjnr[jidx+2];
2348 jnrlistD = jjnr[jidx+3];
2349 /* Sign of each element will be negative for non-real atoms.
2350 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
2351 * so use it as val = _mm_andnot_pd(mask,val) to clear dummy entries.
2353 tmpmask0 = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
2355 tmpmask1 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(3,3,2,2));
2356 tmpmask0 = _mm_permute_ps(tmpmask0,_GMX_MM_PERMUTE(1,1,0,0));
2357 dummy_mask = _mm256_castps_pd(gmx_mm256_set_m128(tmpmask1,tmpmask0));
2359 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
2360 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
2361 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
2362 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
2363 j_coord_offsetA = DIM*jnrA;
2364 j_coord_offsetB = DIM*jnrB;
2365 j_coord_offsetC = DIM*jnrC;
2366 j_coord_offsetD = DIM*jnrD;
2368 /* load j atom coordinates */
2369 gmx_mm256_load_4rvec_4ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
2370 x+j_coord_offsetC,x+j_coord_offsetD,
2371 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
2372 &jy2,&jz2,&jx3,&jy3,&jz3);
2374 /* Calculate displacement vector */
2375 dx00 = _mm256_sub_pd(ix0,jx0);
2376 dy00 = _mm256_sub_pd(iy0,jy0);
2377 dz00 = _mm256_sub_pd(iz0,jz0);
2378 dx11 = _mm256_sub_pd(ix1,jx1);
2379 dy11 = _mm256_sub_pd(iy1,jy1);
2380 dz11 = _mm256_sub_pd(iz1,jz1);
2381 dx12 = _mm256_sub_pd(ix1,jx2);
2382 dy12 = _mm256_sub_pd(iy1,jy2);
2383 dz12 = _mm256_sub_pd(iz1,jz2);
2384 dx13 = _mm256_sub_pd(ix1,jx3);
2385 dy13 = _mm256_sub_pd(iy1,jy3);
2386 dz13 = _mm256_sub_pd(iz1,jz3);
2387 dx21 = _mm256_sub_pd(ix2,jx1);
2388 dy21 = _mm256_sub_pd(iy2,jy1);
2389 dz21 = _mm256_sub_pd(iz2,jz1);
2390 dx22 = _mm256_sub_pd(ix2,jx2);
2391 dy22 = _mm256_sub_pd(iy2,jy2);
2392 dz22 = _mm256_sub_pd(iz2,jz2);
2393 dx23 = _mm256_sub_pd(ix2,jx3);
2394 dy23 = _mm256_sub_pd(iy2,jy3);
2395 dz23 = _mm256_sub_pd(iz2,jz3);
2396 dx31 = _mm256_sub_pd(ix3,jx1);
2397 dy31 = _mm256_sub_pd(iy3,jy1);
2398 dz31 = _mm256_sub_pd(iz3,jz1);
2399 dx32 = _mm256_sub_pd(ix3,jx2);
2400 dy32 = _mm256_sub_pd(iy3,jy2);
2401 dz32 = _mm256_sub_pd(iz3,jz2);
2402 dx33 = _mm256_sub_pd(ix3,jx3);
2403 dy33 = _mm256_sub_pd(iy3,jy3);
2404 dz33 = _mm256_sub_pd(iz3,jz3);
2406 /* Calculate squared distance and things based on it */
2407 rsq00 = gmx_mm256_calc_rsq_pd(dx00,dy00,dz00);
2408 rsq11 = gmx_mm256_calc_rsq_pd(dx11,dy11,dz11);
2409 rsq12 = gmx_mm256_calc_rsq_pd(dx12,dy12,dz12);
2410 rsq13 = gmx_mm256_calc_rsq_pd(dx13,dy13,dz13);
2411 rsq21 = gmx_mm256_calc_rsq_pd(dx21,dy21,dz21);
2412 rsq22 = gmx_mm256_calc_rsq_pd(dx22,dy22,dz22);
2413 rsq23 = gmx_mm256_calc_rsq_pd(dx23,dy23,dz23);
2414 rsq31 = gmx_mm256_calc_rsq_pd(dx31,dy31,dz31);
2415 rsq32 = gmx_mm256_calc_rsq_pd(dx32,dy32,dz32);
2416 rsq33 = gmx_mm256_calc_rsq_pd(dx33,dy33,dz33);
2418 rinv00 = gmx_mm256_invsqrt_pd(rsq00);
2419 rinv11 = gmx_mm256_invsqrt_pd(rsq11);
2420 rinv12 = gmx_mm256_invsqrt_pd(rsq12);
2421 rinv13 = gmx_mm256_invsqrt_pd(rsq13);
2422 rinv21 = gmx_mm256_invsqrt_pd(rsq21);
2423 rinv22 = gmx_mm256_invsqrt_pd(rsq22);
2424 rinv23 = gmx_mm256_invsqrt_pd(rsq23);
2425 rinv31 = gmx_mm256_invsqrt_pd(rsq31);
2426 rinv32 = gmx_mm256_invsqrt_pd(rsq32);
2427 rinv33 = gmx_mm256_invsqrt_pd(rsq33);
2429 rinvsq00 = _mm256_mul_pd(rinv00,rinv00);
2430 rinvsq11 = _mm256_mul_pd(rinv11,rinv11);
2431 rinvsq12 = _mm256_mul_pd(rinv12,rinv12);
2432 rinvsq13 = _mm256_mul_pd(rinv13,rinv13);
2433 rinvsq21 = _mm256_mul_pd(rinv21,rinv21);
2434 rinvsq22 = _mm256_mul_pd(rinv22,rinv22);
2435 rinvsq23 = _mm256_mul_pd(rinv23,rinv23);
2436 rinvsq31 = _mm256_mul_pd(rinv31,rinv31);
2437 rinvsq32 = _mm256_mul_pd(rinv32,rinv32);
2438 rinvsq33 = _mm256_mul_pd(rinv33,rinv33);
2440 fjx0 = _mm256_setzero_pd();
2441 fjy0 = _mm256_setzero_pd();
2442 fjz0 = _mm256_setzero_pd();
2443 fjx1 = _mm256_setzero_pd();
2444 fjy1 = _mm256_setzero_pd();
2445 fjz1 = _mm256_setzero_pd();
2446 fjx2 = _mm256_setzero_pd();
2447 fjy2 = _mm256_setzero_pd();
2448 fjz2 = _mm256_setzero_pd();
2449 fjx3 = _mm256_setzero_pd();
2450 fjy3 = _mm256_setzero_pd();
2451 fjz3 = _mm256_setzero_pd();
2453 /**************************
2454 * CALCULATE INTERACTIONS *
2455 **************************/
2457 if (gmx_mm256_any_lt(rsq00,rcutoff2))
2460 r00 = _mm256_mul_pd(rsq00,rinv00);
2461 r00 = _mm256_andnot_pd(dummy_mask,r00);
2463 /* Analytical LJ-PME */
2464 rinvsix = _mm256_mul_pd(_mm256_mul_pd(rinvsq00,rinvsq00),rinvsq00);
2465 ewcljrsq = _mm256_mul_pd(ewclj2,rsq00);
2466 ewclj6 = _mm256_mul_pd(ewclj2,_mm256_mul_pd(ewclj2,ewclj2));
2467 exponent = gmx_simd_exp_d(ewcljrsq);
2468 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
2469 poly = _mm256_mul_pd(exponent,_mm256_add_pd(_mm256_sub_pd(one,ewcljrsq),_mm256_mul_pd(_mm256_mul_pd(ewcljrsq,ewcljrsq),one_half)));
2470 /* f6A = 6 * C6grid * (1 - poly) */
2471 f6A = _mm256_mul_pd(c6grid_00,_mm256_sub_pd(one,poly));
2472 /* f6B = C6grid * exponent * beta^6 */
2473 f6B = _mm256_mul_pd(_mm256_mul_pd(c6grid_00,one_sixth),_mm256_mul_pd(exponent,ewclj6));
2474 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
2475 fvdw = _mm256_mul_pd(_mm256_add_pd(_mm256_mul_pd(_mm256_sub_pd(_mm256_mul_pd(c12_00,rinvsix),_mm256_sub_pd(c6_00,f6A)),rinvsix),f6B),rinvsq00);
2477 cutoff_mask = _mm256_cmp_pd(rsq00,rcutoff2,_CMP_LT_OQ);
2481 fscal = _mm256_and_pd(fscal,cutoff_mask);
2483 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2485 /* Calculate temporary vectorial force */
2486 tx = _mm256_mul_pd(fscal,dx00);
2487 ty = _mm256_mul_pd(fscal,dy00);
2488 tz = _mm256_mul_pd(fscal,dz00);
2490 /* Update vectorial force */
2491 fix0 = _mm256_add_pd(fix0,tx);
2492 fiy0 = _mm256_add_pd(fiy0,ty);
2493 fiz0 = _mm256_add_pd(fiz0,tz);
2495 fjx0 = _mm256_add_pd(fjx0,tx);
2496 fjy0 = _mm256_add_pd(fjy0,ty);
2497 fjz0 = _mm256_add_pd(fjz0,tz);
2501 /**************************
2502 * CALCULATE INTERACTIONS *
2503 **************************/
2505 if (gmx_mm256_any_lt(rsq11,rcutoff2))
2508 r11 = _mm256_mul_pd(rsq11,rinv11);
2509 r11 = _mm256_andnot_pd(dummy_mask,r11);
2511 /* EWALD ELECTROSTATICS */
2513 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2514 ewrt = _mm256_mul_pd(r11,ewtabscale);
2515 ewitab = _mm256_cvttpd_epi32(ewrt);
2516 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2517 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2518 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2520 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2521 felec = _mm256_mul_pd(_mm256_mul_pd(qq11,rinv11),_mm256_sub_pd(rinvsq11,felec));
2523 cutoff_mask = _mm256_cmp_pd(rsq11,rcutoff2,_CMP_LT_OQ);
2527 fscal = _mm256_and_pd(fscal,cutoff_mask);
2529 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2531 /* Calculate temporary vectorial force */
2532 tx = _mm256_mul_pd(fscal,dx11);
2533 ty = _mm256_mul_pd(fscal,dy11);
2534 tz = _mm256_mul_pd(fscal,dz11);
2536 /* Update vectorial force */
2537 fix1 = _mm256_add_pd(fix1,tx);
2538 fiy1 = _mm256_add_pd(fiy1,ty);
2539 fiz1 = _mm256_add_pd(fiz1,tz);
2541 fjx1 = _mm256_add_pd(fjx1,tx);
2542 fjy1 = _mm256_add_pd(fjy1,ty);
2543 fjz1 = _mm256_add_pd(fjz1,tz);
2547 /**************************
2548 * CALCULATE INTERACTIONS *
2549 **************************/
2551 if (gmx_mm256_any_lt(rsq12,rcutoff2))
2554 r12 = _mm256_mul_pd(rsq12,rinv12);
2555 r12 = _mm256_andnot_pd(dummy_mask,r12);
2557 /* EWALD ELECTROSTATICS */
2559 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2560 ewrt = _mm256_mul_pd(r12,ewtabscale);
2561 ewitab = _mm256_cvttpd_epi32(ewrt);
2562 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2563 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2564 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2566 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2567 felec = _mm256_mul_pd(_mm256_mul_pd(qq12,rinv12),_mm256_sub_pd(rinvsq12,felec));
2569 cutoff_mask = _mm256_cmp_pd(rsq12,rcutoff2,_CMP_LT_OQ);
2573 fscal = _mm256_and_pd(fscal,cutoff_mask);
2575 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2577 /* Calculate temporary vectorial force */
2578 tx = _mm256_mul_pd(fscal,dx12);
2579 ty = _mm256_mul_pd(fscal,dy12);
2580 tz = _mm256_mul_pd(fscal,dz12);
2582 /* Update vectorial force */
2583 fix1 = _mm256_add_pd(fix1,tx);
2584 fiy1 = _mm256_add_pd(fiy1,ty);
2585 fiz1 = _mm256_add_pd(fiz1,tz);
2587 fjx2 = _mm256_add_pd(fjx2,tx);
2588 fjy2 = _mm256_add_pd(fjy2,ty);
2589 fjz2 = _mm256_add_pd(fjz2,tz);
2593 /**************************
2594 * CALCULATE INTERACTIONS *
2595 **************************/
2597 if (gmx_mm256_any_lt(rsq13,rcutoff2))
2600 r13 = _mm256_mul_pd(rsq13,rinv13);
2601 r13 = _mm256_andnot_pd(dummy_mask,r13);
2603 /* EWALD ELECTROSTATICS */
2605 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2606 ewrt = _mm256_mul_pd(r13,ewtabscale);
2607 ewitab = _mm256_cvttpd_epi32(ewrt);
2608 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2609 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2610 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2612 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2613 felec = _mm256_mul_pd(_mm256_mul_pd(qq13,rinv13),_mm256_sub_pd(rinvsq13,felec));
2615 cutoff_mask = _mm256_cmp_pd(rsq13,rcutoff2,_CMP_LT_OQ);
2619 fscal = _mm256_and_pd(fscal,cutoff_mask);
2621 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2623 /* Calculate temporary vectorial force */
2624 tx = _mm256_mul_pd(fscal,dx13);
2625 ty = _mm256_mul_pd(fscal,dy13);
2626 tz = _mm256_mul_pd(fscal,dz13);
2628 /* Update vectorial force */
2629 fix1 = _mm256_add_pd(fix1,tx);
2630 fiy1 = _mm256_add_pd(fiy1,ty);
2631 fiz1 = _mm256_add_pd(fiz1,tz);
2633 fjx3 = _mm256_add_pd(fjx3,tx);
2634 fjy3 = _mm256_add_pd(fjy3,ty);
2635 fjz3 = _mm256_add_pd(fjz3,tz);
2639 /**************************
2640 * CALCULATE INTERACTIONS *
2641 **************************/
2643 if (gmx_mm256_any_lt(rsq21,rcutoff2))
2646 r21 = _mm256_mul_pd(rsq21,rinv21);
2647 r21 = _mm256_andnot_pd(dummy_mask,r21);
2649 /* EWALD ELECTROSTATICS */
2651 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2652 ewrt = _mm256_mul_pd(r21,ewtabscale);
2653 ewitab = _mm256_cvttpd_epi32(ewrt);
2654 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2655 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2656 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2658 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2659 felec = _mm256_mul_pd(_mm256_mul_pd(qq21,rinv21),_mm256_sub_pd(rinvsq21,felec));
2661 cutoff_mask = _mm256_cmp_pd(rsq21,rcutoff2,_CMP_LT_OQ);
2665 fscal = _mm256_and_pd(fscal,cutoff_mask);
2667 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2669 /* Calculate temporary vectorial force */
2670 tx = _mm256_mul_pd(fscal,dx21);
2671 ty = _mm256_mul_pd(fscal,dy21);
2672 tz = _mm256_mul_pd(fscal,dz21);
2674 /* Update vectorial force */
2675 fix2 = _mm256_add_pd(fix2,tx);
2676 fiy2 = _mm256_add_pd(fiy2,ty);
2677 fiz2 = _mm256_add_pd(fiz2,tz);
2679 fjx1 = _mm256_add_pd(fjx1,tx);
2680 fjy1 = _mm256_add_pd(fjy1,ty);
2681 fjz1 = _mm256_add_pd(fjz1,tz);
2685 /**************************
2686 * CALCULATE INTERACTIONS *
2687 **************************/
2689 if (gmx_mm256_any_lt(rsq22,rcutoff2))
2692 r22 = _mm256_mul_pd(rsq22,rinv22);
2693 r22 = _mm256_andnot_pd(dummy_mask,r22);
2695 /* EWALD ELECTROSTATICS */
2697 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2698 ewrt = _mm256_mul_pd(r22,ewtabscale);
2699 ewitab = _mm256_cvttpd_epi32(ewrt);
2700 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2701 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2702 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2704 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2705 felec = _mm256_mul_pd(_mm256_mul_pd(qq22,rinv22),_mm256_sub_pd(rinvsq22,felec));
2707 cutoff_mask = _mm256_cmp_pd(rsq22,rcutoff2,_CMP_LT_OQ);
2711 fscal = _mm256_and_pd(fscal,cutoff_mask);
2713 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2715 /* Calculate temporary vectorial force */
2716 tx = _mm256_mul_pd(fscal,dx22);
2717 ty = _mm256_mul_pd(fscal,dy22);
2718 tz = _mm256_mul_pd(fscal,dz22);
2720 /* Update vectorial force */
2721 fix2 = _mm256_add_pd(fix2,tx);
2722 fiy2 = _mm256_add_pd(fiy2,ty);
2723 fiz2 = _mm256_add_pd(fiz2,tz);
2725 fjx2 = _mm256_add_pd(fjx2,tx);
2726 fjy2 = _mm256_add_pd(fjy2,ty);
2727 fjz2 = _mm256_add_pd(fjz2,tz);
2731 /**************************
2732 * CALCULATE INTERACTIONS *
2733 **************************/
2735 if (gmx_mm256_any_lt(rsq23,rcutoff2))
2738 r23 = _mm256_mul_pd(rsq23,rinv23);
2739 r23 = _mm256_andnot_pd(dummy_mask,r23);
2741 /* EWALD ELECTROSTATICS */
2743 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2744 ewrt = _mm256_mul_pd(r23,ewtabscale);
2745 ewitab = _mm256_cvttpd_epi32(ewrt);
2746 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2747 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2748 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2750 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2751 felec = _mm256_mul_pd(_mm256_mul_pd(qq23,rinv23),_mm256_sub_pd(rinvsq23,felec));
2753 cutoff_mask = _mm256_cmp_pd(rsq23,rcutoff2,_CMP_LT_OQ);
2757 fscal = _mm256_and_pd(fscal,cutoff_mask);
2759 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2761 /* Calculate temporary vectorial force */
2762 tx = _mm256_mul_pd(fscal,dx23);
2763 ty = _mm256_mul_pd(fscal,dy23);
2764 tz = _mm256_mul_pd(fscal,dz23);
2766 /* Update vectorial force */
2767 fix2 = _mm256_add_pd(fix2,tx);
2768 fiy2 = _mm256_add_pd(fiy2,ty);
2769 fiz2 = _mm256_add_pd(fiz2,tz);
2771 fjx3 = _mm256_add_pd(fjx3,tx);
2772 fjy3 = _mm256_add_pd(fjy3,ty);
2773 fjz3 = _mm256_add_pd(fjz3,tz);
2777 /**************************
2778 * CALCULATE INTERACTIONS *
2779 **************************/
2781 if (gmx_mm256_any_lt(rsq31,rcutoff2))
2784 r31 = _mm256_mul_pd(rsq31,rinv31);
2785 r31 = _mm256_andnot_pd(dummy_mask,r31);
2787 /* EWALD ELECTROSTATICS */
2789 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2790 ewrt = _mm256_mul_pd(r31,ewtabscale);
2791 ewitab = _mm256_cvttpd_epi32(ewrt);
2792 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2793 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2794 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2796 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2797 felec = _mm256_mul_pd(_mm256_mul_pd(qq31,rinv31),_mm256_sub_pd(rinvsq31,felec));
2799 cutoff_mask = _mm256_cmp_pd(rsq31,rcutoff2,_CMP_LT_OQ);
2803 fscal = _mm256_and_pd(fscal,cutoff_mask);
2805 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2807 /* Calculate temporary vectorial force */
2808 tx = _mm256_mul_pd(fscal,dx31);
2809 ty = _mm256_mul_pd(fscal,dy31);
2810 tz = _mm256_mul_pd(fscal,dz31);
2812 /* Update vectorial force */
2813 fix3 = _mm256_add_pd(fix3,tx);
2814 fiy3 = _mm256_add_pd(fiy3,ty);
2815 fiz3 = _mm256_add_pd(fiz3,tz);
2817 fjx1 = _mm256_add_pd(fjx1,tx);
2818 fjy1 = _mm256_add_pd(fjy1,ty);
2819 fjz1 = _mm256_add_pd(fjz1,tz);
2823 /**************************
2824 * CALCULATE INTERACTIONS *
2825 **************************/
2827 if (gmx_mm256_any_lt(rsq32,rcutoff2))
2830 r32 = _mm256_mul_pd(rsq32,rinv32);
2831 r32 = _mm256_andnot_pd(dummy_mask,r32);
2833 /* EWALD ELECTROSTATICS */
2835 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2836 ewrt = _mm256_mul_pd(r32,ewtabscale);
2837 ewitab = _mm256_cvttpd_epi32(ewrt);
2838 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2839 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2840 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2842 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2843 felec = _mm256_mul_pd(_mm256_mul_pd(qq32,rinv32),_mm256_sub_pd(rinvsq32,felec));
2845 cutoff_mask = _mm256_cmp_pd(rsq32,rcutoff2,_CMP_LT_OQ);
2849 fscal = _mm256_and_pd(fscal,cutoff_mask);
2851 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2853 /* Calculate temporary vectorial force */
2854 tx = _mm256_mul_pd(fscal,dx32);
2855 ty = _mm256_mul_pd(fscal,dy32);
2856 tz = _mm256_mul_pd(fscal,dz32);
2858 /* Update vectorial force */
2859 fix3 = _mm256_add_pd(fix3,tx);
2860 fiy3 = _mm256_add_pd(fiy3,ty);
2861 fiz3 = _mm256_add_pd(fiz3,tz);
2863 fjx2 = _mm256_add_pd(fjx2,tx);
2864 fjy2 = _mm256_add_pd(fjy2,ty);
2865 fjz2 = _mm256_add_pd(fjz2,tz);
2869 /**************************
2870 * CALCULATE INTERACTIONS *
2871 **************************/
2873 if (gmx_mm256_any_lt(rsq33,rcutoff2))
2876 r33 = _mm256_mul_pd(rsq33,rinv33);
2877 r33 = _mm256_andnot_pd(dummy_mask,r33);
2879 /* EWALD ELECTROSTATICS */
2881 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2882 ewrt = _mm256_mul_pd(r33,ewtabscale);
2883 ewitab = _mm256_cvttpd_epi32(ewrt);
2884 eweps = _mm256_sub_pd(ewrt,_mm256_round_pd(ewrt, _MM_FROUND_FLOOR));
2885 gmx_mm256_load_4pair_swizzle_pd(ewtab + _mm_extract_epi32(ewitab,0),ewtab + _mm_extract_epi32(ewitab,1),
2886 ewtab + _mm_extract_epi32(ewitab,2),ewtab + _mm_extract_epi32(ewitab,3),
2888 felec = _mm256_add_pd(_mm256_mul_pd( _mm256_sub_pd(one,eweps),ewtabF),_mm256_mul_pd(eweps,ewtabFn));
2889 felec = _mm256_mul_pd(_mm256_mul_pd(qq33,rinv33),_mm256_sub_pd(rinvsq33,felec));
2891 cutoff_mask = _mm256_cmp_pd(rsq33,rcutoff2,_CMP_LT_OQ);
2895 fscal = _mm256_and_pd(fscal,cutoff_mask);
2897 fscal = _mm256_andnot_pd(dummy_mask,fscal);
2899 /* Calculate temporary vectorial force */
2900 tx = _mm256_mul_pd(fscal,dx33);
2901 ty = _mm256_mul_pd(fscal,dy33);
2902 tz = _mm256_mul_pd(fscal,dz33);
2904 /* Update vectorial force */
2905 fix3 = _mm256_add_pd(fix3,tx);
2906 fiy3 = _mm256_add_pd(fiy3,ty);
2907 fiz3 = _mm256_add_pd(fiz3,tz);
2909 fjx3 = _mm256_add_pd(fjx3,tx);
2910 fjy3 = _mm256_add_pd(fjy3,ty);
2911 fjz3 = _mm256_add_pd(fjz3,tz);
2915 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
2916 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
2917 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
2918 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
2920 gmx_mm256_decrement_4rvec_4ptr_swizzle_pd(fjptrA,fjptrB,fjptrC,fjptrD,
2921 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,
2922 fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
2924 /* Inner loop uses 413 flops */
2927 /* End of innermost loop */
2929 gmx_mm256_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
2930 f+i_coord_offset,fshift+i_shift_offset);
2932 /* Increment number of inner iterations */
2933 inneriter += j_index_end - j_index_start;
2935 /* Outer loop uses 24 flops */
2938 /* Increment number of outer iterations */
2941 /* Update outer/inner flops */
2943 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4W4_F,outeriter*24 + inneriter*413);