2 * Note: this file was generated by the Gromacs avx_128_fma_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_single.h"
34 #include "kernelutil_x86_avx_128_fma_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomW4P1_VF_avx_128_fma_single
38 * Electrostatics interaction: ReactionField
39 * VdW interaction: LennardJones
40 * Geometry: Water4-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecRF_VdwLJ_GeomW4P1_VF_avx_128_fma_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
76 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
77 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
78 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
79 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
80 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
81 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
82 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
83 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
86 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
89 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
90 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
91 __m128 dummy_mask,cutoff_mask;
92 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
93 __m128 one = _mm_set1_ps(1.0);
94 __m128 two = _mm_set1_ps(2.0);
100 jindex = nlist->jindex;
102 shiftidx = nlist->shift;
104 shiftvec = fr->shift_vec[0];
105 fshift = fr->fshift[0];
106 facel = _mm_set1_ps(fr->epsfac);
107 charge = mdatoms->chargeA;
108 krf = _mm_set1_ps(fr->ic->k_rf);
109 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
110 crf = _mm_set1_ps(fr->ic->c_rf);
111 nvdwtype = fr->ntype;
113 vdwtype = mdatoms->typeA;
115 /* Setup water-specific parameters */
116 inr = nlist->iinr[0];
117 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
118 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
119 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
120 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
122 /* Avoid stupid compiler warnings */
123 jnrA = jnrB = jnrC = jnrD = 0;
132 for(iidx=0;iidx<4*DIM;iidx++)
137 /* Start outer loop over neighborlists */
138 for(iidx=0; iidx<nri; iidx++)
140 /* Load shift vector for this list */
141 i_shift_offset = DIM*shiftidx[iidx];
143 /* Load limits for loop over neighbors */
144 j_index_start = jindex[iidx];
145 j_index_end = jindex[iidx+1];
147 /* Get outer coordinate index */
149 i_coord_offset = DIM*inr;
151 /* Load i particle coords and add shift vector */
152 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
153 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
155 fix0 = _mm_setzero_ps();
156 fiy0 = _mm_setzero_ps();
157 fiz0 = _mm_setzero_ps();
158 fix1 = _mm_setzero_ps();
159 fiy1 = _mm_setzero_ps();
160 fiz1 = _mm_setzero_ps();
161 fix2 = _mm_setzero_ps();
162 fiy2 = _mm_setzero_ps();
163 fiz2 = _mm_setzero_ps();
164 fix3 = _mm_setzero_ps();
165 fiy3 = _mm_setzero_ps();
166 fiz3 = _mm_setzero_ps();
168 /* Reset potential sums */
169 velecsum = _mm_setzero_ps();
170 vvdwsum = _mm_setzero_ps();
172 /* Start inner kernel loop */
173 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
176 /* Get j neighbor index, and coordinate index */
181 j_coord_offsetA = DIM*jnrA;
182 j_coord_offsetB = DIM*jnrB;
183 j_coord_offsetC = DIM*jnrC;
184 j_coord_offsetD = DIM*jnrD;
186 /* load j atom coordinates */
187 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
188 x+j_coord_offsetC,x+j_coord_offsetD,
191 /* Calculate displacement vector */
192 dx00 = _mm_sub_ps(ix0,jx0);
193 dy00 = _mm_sub_ps(iy0,jy0);
194 dz00 = _mm_sub_ps(iz0,jz0);
195 dx10 = _mm_sub_ps(ix1,jx0);
196 dy10 = _mm_sub_ps(iy1,jy0);
197 dz10 = _mm_sub_ps(iz1,jz0);
198 dx20 = _mm_sub_ps(ix2,jx0);
199 dy20 = _mm_sub_ps(iy2,jy0);
200 dz20 = _mm_sub_ps(iz2,jz0);
201 dx30 = _mm_sub_ps(ix3,jx0);
202 dy30 = _mm_sub_ps(iy3,jy0);
203 dz30 = _mm_sub_ps(iz3,jz0);
205 /* Calculate squared distance and things based on it */
206 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
207 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
208 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
209 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
211 rinv10 = gmx_mm_invsqrt_ps(rsq10);
212 rinv20 = gmx_mm_invsqrt_ps(rsq20);
213 rinv30 = gmx_mm_invsqrt_ps(rsq30);
215 rinvsq00 = gmx_mm_inv_ps(rsq00);
216 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
217 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
218 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
220 /* Load parameters for j particles */
221 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
222 charge+jnrC+0,charge+jnrD+0);
223 vdwjidx0A = 2*vdwtype[jnrA+0];
224 vdwjidx0B = 2*vdwtype[jnrB+0];
225 vdwjidx0C = 2*vdwtype[jnrC+0];
226 vdwjidx0D = 2*vdwtype[jnrD+0];
228 fjx0 = _mm_setzero_ps();
229 fjy0 = _mm_setzero_ps();
230 fjz0 = _mm_setzero_ps();
232 /**************************
233 * CALCULATE INTERACTIONS *
234 **************************/
236 /* Compute parameters for interactions between i and j atoms */
237 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
238 vdwparam+vdwioffset0+vdwjidx0B,
239 vdwparam+vdwioffset0+vdwjidx0C,
240 vdwparam+vdwioffset0+vdwjidx0D,
243 /* LENNARD-JONES DISPERSION/REPULSION */
245 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
246 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
247 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
248 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
249 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
251 /* Update potential sum for this i atom from the interaction with this j atom. */
252 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
256 /* Update vectorial force */
257 fix0 = _mm_macc_ps(dx00,fscal,fix0);
258 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
259 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
261 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
262 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
263 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
265 /**************************
266 * CALCULATE INTERACTIONS *
267 **************************/
269 /* Compute parameters for interactions between i and j atoms */
270 qq10 = _mm_mul_ps(iq1,jq0);
272 /* REACTION-FIELD ELECTROSTATICS */
273 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_macc_ps(krf,rsq10,rinv10),crf));
274 felec = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
276 /* Update potential sum for this i atom from the interaction with this j atom. */
277 velecsum = _mm_add_ps(velecsum,velec);
281 /* Update vectorial force */
282 fix1 = _mm_macc_ps(dx10,fscal,fix1);
283 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
284 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
286 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
287 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
288 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
290 /**************************
291 * CALCULATE INTERACTIONS *
292 **************************/
294 /* Compute parameters for interactions between i and j atoms */
295 qq20 = _mm_mul_ps(iq2,jq0);
297 /* REACTION-FIELD ELECTROSTATICS */
298 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_macc_ps(krf,rsq20,rinv20),crf));
299 felec = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
301 /* Update potential sum for this i atom from the interaction with this j atom. */
302 velecsum = _mm_add_ps(velecsum,velec);
306 /* Update vectorial force */
307 fix2 = _mm_macc_ps(dx20,fscal,fix2);
308 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
309 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
311 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
312 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
313 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
315 /**************************
316 * CALCULATE INTERACTIONS *
317 **************************/
319 /* Compute parameters for interactions between i and j atoms */
320 qq30 = _mm_mul_ps(iq3,jq0);
322 /* REACTION-FIELD ELECTROSTATICS */
323 velec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_macc_ps(krf,rsq30,rinv30),crf));
324 felec = _mm_mul_ps(qq30,_mm_msub_ps(rinv30,rinvsq30,krf2));
326 /* Update potential sum for this i atom from the interaction with this j atom. */
327 velecsum = _mm_add_ps(velecsum,velec);
331 /* Update vectorial force */
332 fix3 = _mm_macc_ps(dx30,fscal,fix3);
333 fiy3 = _mm_macc_ps(dy30,fscal,fiy3);
334 fiz3 = _mm_macc_ps(dz30,fscal,fiz3);
336 fjx0 = _mm_macc_ps(dx30,fscal,fjx0);
337 fjy0 = _mm_macc_ps(dy30,fscal,fjy0);
338 fjz0 = _mm_macc_ps(dz30,fscal,fjz0);
340 fjptrA = f+j_coord_offsetA;
341 fjptrB = f+j_coord_offsetB;
342 fjptrC = f+j_coord_offsetC;
343 fjptrD = f+j_coord_offsetD;
345 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
347 /* Inner loop uses 140 flops */
353 /* Get j neighbor index, and coordinate index */
354 jnrlistA = jjnr[jidx];
355 jnrlistB = jjnr[jidx+1];
356 jnrlistC = jjnr[jidx+2];
357 jnrlistD = jjnr[jidx+3];
358 /* Sign of each element will be negative for non-real atoms.
359 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
360 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
362 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
363 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
364 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
365 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
366 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
367 j_coord_offsetA = DIM*jnrA;
368 j_coord_offsetB = DIM*jnrB;
369 j_coord_offsetC = DIM*jnrC;
370 j_coord_offsetD = DIM*jnrD;
372 /* load j atom coordinates */
373 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
374 x+j_coord_offsetC,x+j_coord_offsetD,
377 /* Calculate displacement vector */
378 dx00 = _mm_sub_ps(ix0,jx0);
379 dy00 = _mm_sub_ps(iy0,jy0);
380 dz00 = _mm_sub_ps(iz0,jz0);
381 dx10 = _mm_sub_ps(ix1,jx0);
382 dy10 = _mm_sub_ps(iy1,jy0);
383 dz10 = _mm_sub_ps(iz1,jz0);
384 dx20 = _mm_sub_ps(ix2,jx0);
385 dy20 = _mm_sub_ps(iy2,jy0);
386 dz20 = _mm_sub_ps(iz2,jz0);
387 dx30 = _mm_sub_ps(ix3,jx0);
388 dy30 = _mm_sub_ps(iy3,jy0);
389 dz30 = _mm_sub_ps(iz3,jz0);
391 /* Calculate squared distance and things based on it */
392 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
393 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
394 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
395 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
397 rinv10 = gmx_mm_invsqrt_ps(rsq10);
398 rinv20 = gmx_mm_invsqrt_ps(rsq20);
399 rinv30 = gmx_mm_invsqrt_ps(rsq30);
401 rinvsq00 = gmx_mm_inv_ps(rsq00);
402 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
403 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
404 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
406 /* Load parameters for j particles */
407 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
408 charge+jnrC+0,charge+jnrD+0);
409 vdwjidx0A = 2*vdwtype[jnrA+0];
410 vdwjidx0B = 2*vdwtype[jnrB+0];
411 vdwjidx0C = 2*vdwtype[jnrC+0];
412 vdwjidx0D = 2*vdwtype[jnrD+0];
414 fjx0 = _mm_setzero_ps();
415 fjy0 = _mm_setzero_ps();
416 fjz0 = _mm_setzero_ps();
418 /**************************
419 * CALCULATE INTERACTIONS *
420 **************************/
422 /* Compute parameters for interactions between i and j atoms */
423 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
424 vdwparam+vdwioffset0+vdwjidx0B,
425 vdwparam+vdwioffset0+vdwjidx0C,
426 vdwparam+vdwioffset0+vdwjidx0D,
429 /* LENNARD-JONES DISPERSION/REPULSION */
431 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
432 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
433 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
434 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
435 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
437 /* Update potential sum for this i atom from the interaction with this j atom. */
438 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
439 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
443 fscal = _mm_andnot_ps(dummy_mask,fscal);
445 /* Update vectorial force */
446 fix0 = _mm_macc_ps(dx00,fscal,fix0);
447 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
448 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
450 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
451 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
452 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
454 /**************************
455 * CALCULATE INTERACTIONS *
456 **************************/
458 /* Compute parameters for interactions between i and j atoms */
459 qq10 = _mm_mul_ps(iq1,jq0);
461 /* REACTION-FIELD ELECTROSTATICS */
462 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_macc_ps(krf,rsq10,rinv10),crf));
463 felec = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
465 /* Update potential sum for this i atom from the interaction with this j atom. */
466 velec = _mm_andnot_ps(dummy_mask,velec);
467 velecsum = _mm_add_ps(velecsum,velec);
471 fscal = _mm_andnot_ps(dummy_mask,fscal);
473 /* Update vectorial force */
474 fix1 = _mm_macc_ps(dx10,fscal,fix1);
475 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
476 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
478 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
479 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
480 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
482 /**************************
483 * CALCULATE INTERACTIONS *
484 **************************/
486 /* Compute parameters for interactions between i and j atoms */
487 qq20 = _mm_mul_ps(iq2,jq0);
489 /* REACTION-FIELD ELECTROSTATICS */
490 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_macc_ps(krf,rsq20,rinv20),crf));
491 felec = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
493 /* Update potential sum for this i atom from the interaction with this j atom. */
494 velec = _mm_andnot_ps(dummy_mask,velec);
495 velecsum = _mm_add_ps(velecsum,velec);
499 fscal = _mm_andnot_ps(dummy_mask,fscal);
501 /* Update vectorial force */
502 fix2 = _mm_macc_ps(dx20,fscal,fix2);
503 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
504 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
506 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
507 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
508 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
510 /**************************
511 * CALCULATE INTERACTIONS *
512 **************************/
514 /* Compute parameters for interactions between i and j atoms */
515 qq30 = _mm_mul_ps(iq3,jq0);
517 /* REACTION-FIELD ELECTROSTATICS */
518 velec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_macc_ps(krf,rsq30,rinv30),crf));
519 felec = _mm_mul_ps(qq30,_mm_msub_ps(rinv30,rinvsq30,krf2));
521 /* Update potential sum for this i atom from the interaction with this j atom. */
522 velec = _mm_andnot_ps(dummy_mask,velec);
523 velecsum = _mm_add_ps(velecsum,velec);
527 fscal = _mm_andnot_ps(dummy_mask,fscal);
529 /* Update vectorial force */
530 fix3 = _mm_macc_ps(dx30,fscal,fix3);
531 fiy3 = _mm_macc_ps(dy30,fscal,fiy3);
532 fiz3 = _mm_macc_ps(dz30,fscal,fiz3);
534 fjx0 = _mm_macc_ps(dx30,fscal,fjx0);
535 fjy0 = _mm_macc_ps(dy30,fscal,fjy0);
536 fjz0 = _mm_macc_ps(dz30,fscal,fjz0);
538 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
539 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
540 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
541 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
543 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
545 /* Inner loop uses 140 flops */
548 /* End of innermost loop */
550 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
551 f+i_coord_offset,fshift+i_shift_offset);
554 /* Update potential energies */
555 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
556 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
558 /* Increment number of inner iterations */
559 inneriter += j_index_end - j_index_start;
561 /* Outer loop uses 26 flops */
564 /* Increment number of outer iterations */
567 /* Update outer/inner flops */
569 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*140);
572 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomW4P1_F_avx_128_fma_single
573 * Electrostatics interaction: ReactionField
574 * VdW interaction: LennardJones
575 * Geometry: Water4-Particle
576 * Calculate force/pot: Force
579 nb_kernel_ElecRF_VdwLJ_GeomW4P1_F_avx_128_fma_single
580 (t_nblist * gmx_restrict nlist,
581 rvec * gmx_restrict xx,
582 rvec * gmx_restrict ff,
583 t_forcerec * gmx_restrict fr,
584 t_mdatoms * gmx_restrict mdatoms,
585 nb_kernel_data_t * gmx_restrict kernel_data,
586 t_nrnb * gmx_restrict nrnb)
588 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
589 * just 0 for non-waters.
590 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
591 * jnr indices corresponding to data put in the four positions in the SIMD register.
593 int i_shift_offset,i_coord_offset,outeriter,inneriter;
594 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
595 int jnrA,jnrB,jnrC,jnrD;
596 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
597 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
598 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
600 real *shiftvec,*fshift,*x,*f;
601 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
603 __m128 fscal,rcutoff,rcutoff2,jidxall;
605 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
607 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
609 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
611 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
612 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
613 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
614 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
615 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
616 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
617 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
618 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
621 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
624 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
625 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
626 __m128 dummy_mask,cutoff_mask;
627 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
628 __m128 one = _mm_set1_ps(1.0);
629 __m128 two = _mm_set1_ps(2.0);
635 jindex = nlist->jindex;
637 shiftidx = nlist->shift;
639 shiftvec = fr->shift_vec[0];
640 fshift = fr->fshift[0];
641 facel = _mm_set1_ps(fr->epsfac);
642 charge = mdatoms->chargeA;
643 krf = _mm_set1_ps(fr->ic->k_rf);
644 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
645 crf = _mm_set1_ps(fr->ic->c_rf);
646 nvdwtype = fr->ntype;
648 vdwtype = mdatoms->typeA;
650 /* Setup water-specific parameters */
651 inr = nlist->iinr[0];
652 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
653 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
654 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
655 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
657 /* Avoid stupid compiler warnings */
658 jnrA = jnrB = jnrC = jnrD = 0;
667 for(iidx=0;iidx<4*DIM;iidx++)
672 /* Start outer loop over neighborlists */
673 for(iidx=0; iidx<nri; iidx++)
675 /* Load shift vector for this list */
676 i_shift_offset = DIM*shiftidx[iidx];
678 /* Load limits for loop over neighbors */
679 j_index_start = jindex[iidx];
680 j_index_end = jindex[iidx+1];
682 /* Get outer coordinate index */
684 i_coord_offset = DIM*inr;
686 /* Load i particle coords and add shift vector */
687 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
688 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
690 fix0 = _mm_setzero_ps();
691 fiy0 = _mm_setzero_ps();
692 fiz0 = _mm_setzero_ps();
693 fix1 = _mm_setzero_ps();
694 fiy1 = _mm_setzero_ps();
695 fiz1 = _mm_setzero_ps();
696 fix2 = _mm_setzero_ps();
697 fiy2 = _mm_setzero_ps();
698 fiz2 = _mm_setzero_ps();
699 fix3 = _mm_setzero_ps();
700 fiy3 = _mm_setzero_ps();
701 fiz3 = _mm_setzero_ps();
703 /* Start inner kernel loop */
704 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
707 /* Get j neighbor index, and coordinate index */
712 j_coord_offsetA = DIM*jnrA;
713 j_coord_offsetB = DIM*jnrB;
714 j_coord_offsetC = DIM*jnrC;
715 j_coord_offsetD = DIM*jnrD;
717 /* load j atom coordinates */
718 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
719 x+j_coord_offsetC,x+j_coord_offsetD,
722 /* Calculate displacement vector */
723 dx00 = _mm_sub_ps(ix0,jx0);
724 dy00 = _mm_sub_ps(iy0,jy0);
725 dz00 = _mm_sub_ps(iz0,jz0);
726 dx10 = _mm_sub_ps(ix1,jx0);
727 dy10 = _mm_sub_ps(iy1,jy0);
728 dz10 = _mm_sub_ps(iz1,jz0);
729 dx20 = _mm_sub_ps(ix2,jx0);
730 dy20 = _mm_sub_ps(iy2,jy0);
731 dz20 = _mm_sub_ps(iz2,jz0);
732 dx30 = _mm_sub_ps(ix3,jx0);
733 dy30 = _mm_sub_ps(iy3,jy0);
734 dz30 = _mm_sub_ps(iz3,jz0);
736 /* Calculate squared distance and things based on it */
737 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
738 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
739 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
740 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
742 rinv10 = gmx_mm_invsqrt_ps(rsq10);
743 rinv20 = gmx_mm_invsqrt_ps(rsq20);
744 rinv30 = gmx_mm_invsqrt_ps(rsq30);
746 rinvsq00 = gmx_mm_inv_ps(rsq00);
747 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
748 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
749 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
751 /* Load parameters for j particles */
752 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
753 charge+jnrC+0,charge+jnrD+0);
754 vdwjidx0A = 2*vdwtype[jnrA+0];
755 vdwjidx0B = 2*vdwtype[jnrB+0];
756 vdwjidx0C = 2*vdwtype[jnrC+0];
757 vdwjidx0D = 2*vdwtype[jnrD+0];
759 fjx0 = _mm_setzero_ps();
760 fjy0 = _mm_setzero_ps();
761 fjz0 = _mm_setzero_ps();
763 /**************************
764 * CALCULATE INTERACTIONS *
765 **************************/
767 /* Compute parameters for interactions between i and j atoms */
768 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
769 vdwparam+vdwioffset0+vdwjidx0B,
770 vdwparam+vdwioffset0+vdwjidx0C,
771 vdwparam+vdwioffset0+vdwjidx0D,
774 /* LENNARD-JONES DISPERSION/REPULSION */
776 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
777 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
781 /* Update vectorial force */
782 fix0 = _mm_macc_ps(dx00,fscal,fix0);
783 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
784 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
786 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
787 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
788 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
790 /**************************
791 * CALCULATE INTERACTIONS *
792 **************************/
794 /* Compute parameters for interactions between i and j atoms */
795 qq10 = _mm_mul_ps(iq1,jq0);
797 /* REACTION-FIELD ELECTROSTATICS */
798 felec = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
802 /* Update vectorial force */
803 fix1 = _mm_macc_ps(dx10,fscal,fix1);
804 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
805 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
807 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
808 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
809 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
811 /**************************
812 * CALCULATE INTERACTIONS *
813 **************************/
815 /* Compute parameters for interactions between i and j atoms */
816 qq20 = _mm_mul_ps(iq2,jq0);
818 /* REACTION-FIELD ELECTROSTATICS */
819 felec = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
823 /* Update vectorial force */
824 fix2 = _mm_macc_ps(dx20,fscal,fix2);
825 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
826 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
828 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
829 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
830 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
832 /**************************
833 * CALCULATE INTERACTIONS *
834 **************************/
836 /* Compute parameters for interactions between i and j atoms */
837 qq30 = _mm_mul_ps(iq3,jq0);
839 /* REACTION-FIELD ELECTROSTATICS */
840 felec = _mm_mul_ps(qq30,_mm_msub_ps(rinv30,rinvsq30,krf2));
844 /* Update vectorial force */
845 fix3 = _mm_macc_ps(dx30,fscal,fix3);
846 fiy3 = _mm_macc_ps(dy30,fscal,fiy3);
847 fiz3 = _mm_macc_ps(dz30,fscal,fiz3);
849 fjx0 = _mm_macc_ps(dx30,fscal,fjx0);
850 fjy0 = _mm_macc_ps(dy30,fscal,fjy0);
851 fjz0 = _mm_macc_ps(dz30,fscal,fjz0);
853 fjptrA = f+j_coord_offsetA;
854 fjptrB = f+j_coord_offsetB;
855 fjptrC = f+j_coord_offsetC;
856 fjptrD = f+j_coord_offsetD;
858 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
860 /* Inner loop uses 120 flops */
866 /* Get j neighbor index, and coordinate index */
867 jnrlistA = jjnr[jidx];
868 jnrlistB = jjnr[jidx+1];
869 jnrlistC = jjnr[jidx+2];
870 jnrlistD = jjnr[jidx+3];
871 /* Sign of each element will be negative for non-real atoms.
872 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
873 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
875 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
876 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
877 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
878 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
879 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
880 j_coord_offsetA = DIM*jnrA;
881 j_coord_offsetB = DIM*jnrB;
882 j_coord_offsetC = DIM*jnrC;
883 j_coord_offsetD = DIM*jnrD;
885 /* load j atom coordinates */
886 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
887 x+j_coord_offsetC,x+j_coord_offsetD,
890 /* Calculate displacement vector */
891 dx00 = _mm_sub_ps(ix0,jx0);
892 dy00 = _mm_sub_ps(iy0,jy0);
893 dz00 = _mm_sub_ps(iz0,jz0);
894 dx10 = _mm_sub_ps(ix1,jx0);
895 dy10 = _mm_sub_ps(iy1,jy0);
896 dz10 = _mm_sub_ps(iz1,jz0);
897 dx20 = _mm_sub_ps(ix2,jx0);
898 dy20 = _mm_sub_ps(iy2,jy0);
899 dz20 = _mm_sub_ps(iz2,jz0);
900 dx30 = _mm_sub_ps(ix3,jx0);
901 dy30 = _mm_sub_ps(iy3,jy0);
902 dz30 = _mm_sub_ps(iz3,jz0);
904 /* Calculate squared distance and things based on it */
905 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
906 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
907 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
908 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
910 rinv10 = gmx_mm_invsqrt_ps(rsq10);
911 rinv20 = gmx_mm_invsqrt_ps(rsq20);
912 rinv30 = gmx_mm_invsqrt_ps(rsq30);
914 rinvsq00 = gmx_mm_inv_ps(rsq00);
915 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
916 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
917 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
919 /* Load parameters for j particles */
920 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
921 charge+jnrC+0,charge+jnrD+0);
922 vdwjidx0A = 2*vdwtype[jnrA+0];
923 vdwjidx0B = 2*vdwtype[jnrB+0];
924 vdwjidx0C = 2*vdwtype[jnrC+0];
925 vdwjidx0D = 2*vdwtype[jnrD+0];
927 fjx0 = _mm_setzero_ps();
928 fjy0 = _mm_setzero_ps();
929 fjz0 = _mm_setzero_ps();
931 /**************************
932 * CALCULATE INTERACTIONS *
933 **************************/
935 /* Compute parameters for interactions between i and j atoms */
936 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
937 vdwparam+vdwioffset0+vdwjidx0B,
938 vdwparam+vdwioffset0+vdwjidx0C,
939 vdwparam+vdwioffset0+vdwjidx0D,
942 /* LENNARD-JONES DISPERSION/REPULSION */
944 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
945 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
949 fscal = _mm_andnot_ps(dummy_mask,fscal);
951 /* Update vectorial force */
952 fix0 = _mm_macc_ps(dx00,fscal,fix0);
953 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
954 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
956 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
957 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
958 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
960 /**************************
961 * CALCULATE INTERACTIONS *
962 **************************/
964 /* Compute parameters for interactions between i and j atoms */
965 qq10 = _mm_mul_ps(iq1,jq0);
967 /* REACTION-FIELD ELECTROSTATICS */
968 felec = _mm_mul_ps(qq10,_mm_msub_ps(rinv10,rinvsq10,krf2));
972 fscal = _mm_andnot_ps(dummy_mask,fscal);
974 /* Update vectorial force */
975 fix1 = _mm_macc_ps(dx10,fscal,fix1);
976 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
977 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
979 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
980 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
981 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
983 /**************************
984 * CALCULATE INTERACTIONS *
985 **************************/
987 /* Compute parameters for interactions between i and j atoms */
988 qq20 = _mm_mul_ps(iq2,jq0);
990 /* REACTION-FIELD ELECTROSTATICS */
991 felec = _mm_mul_ps(qq20,_mm_msub_ps(rinv20,rinvsq20,krf2));
995 fscal = _mm_andnot_ps(dummy_mask,fscal);
997 /* Update vectorial force */
998 fix2 = _mm_macc_ps(dx20,fscal,fix2);
999 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
1000 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
1002 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
1003 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
1004 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
1006 /**************************
1007 * CALCULATE INTERACTIONS *
1008 **************************/
1010 /* Compute parameters for interactions between i and j atoms */
1011 qq30 = _mm_mul_ps(iq3,jq0);
1013 /* REACTION-FIELD ELECTROSTATICS */
1014 felec = _mm_mul_ps(qq30,_mm_msub_ps(rinv30,rinvsq30,krf2));
1018 fscal = _mm_andnot_ps(dummy_mask,fscal);
1020 /* Update vectorial force */
1021 fix3 = _mm_macc_ps(dx30,fscal,fix3);
1022 fiy3 = _mm_macc_ps(dy30,fscal,fiy3);
1023 fiz3 = _mm_macc_ps(dz30,fscal,fiz3);
1025 fjx0 = _mm_macc_ps(dx30,fscal,fjx0);
1026 fjy0 = _mm_macc_ps(dy30,fscal,fjy0);
1027 fjz0 = _mm_macc_ps(dz30,fscal,fjz0);
1029 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1030 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1031 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1032 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1034 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1036 /* Inner loop uses 120 flops */
1039 /* End of innermost loop */
1041 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1042 f+i_coord_offset,fshift+i_shift_offset);
1044 /* Increment number of inner iterations */
1045 inneriter += j_index_end - j_index_start;
1047 /* Outer loop uses 24 flops */
1050 /* Increment number of outer iterations */
1053 /* Update outer/inner flops */
1055 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*120);