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36 * Note: this file was generated by the GROMACS avx_128_fma_single kernel generator.
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
47 #include "gromacs/simd/math_x86_avx_128_fma_single.h"
48 #include "kernelutil_x86_avx_128_fma_single.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW3W3_VF_avx_128_fma_single
52 * Electrostatics interaction: Ewald
53 * VdW interaction: LennardJones
54 * Geometry: Water3-Water3
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecEw_VdwLJ_GeomW3W3_VF_avx_128_fma_single
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int jnrA,jnrB,jnrC,jnrD;
75 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
82 __m128 fscal,rcutoff,rcutoff2,jidxall;
84 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
86 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
88 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
89 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
90 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
91 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
92 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
93 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
94 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
95 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
96 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
97 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
98 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
99 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
100 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
101 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
102 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
103 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
104 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
107 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
110 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
111 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
113 __m128 ewtabscale,eweps,twoeweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
114 __m128 beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
116 __m128 dummy_mask,cutoff_mask;
117 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
118 __m128 one = _mm_set1_ps(1.0);
119 __m128 two = _mm_set1_ps(2.0);
125 jindex = nlist->jindex;
127 shiftidx = nlist->shift;
129 shiftvec = fr->shift_vec[0];
130 fshift = fr->fshift[0];
131 facel = _mm_set1_ps(fr->epsfac);
132 charge = mdatoms->chargeA;
133 nvdwtype = fr->ntype;
135 vdwtype = mdatoms->typeA;
137 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
138 beta = _mm_set1_ps(fr->ic->ewaldcoeff_q);
139 beta2 = _mm_mul_ps(beta,beta);
140 beta3 = _mm_mul_ps(beta,beta2);
141 ewtab = fr->ic->tabq_coul_FDV0;
142 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
143 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
145 /* Setup water-specific parameters */
146 inr = nlist->iinr[0];
147 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
148 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
149 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
150 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
152 jq0 = _mm_set1_ps(charge[inr+0]);
153 jq1 = _mm_set1_ps(charge[inr+1]);
154 jq2 = _mm_set1_ps(charge[inr+2]);
155 vdwjidx0A = 2*vdwtype[inr+0];
156 qq00 = _mm_mul_ps(iq0,jq0);
157 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
158 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
159 qq01 = _mm_mul_ps(iq0,jq1);
160 qq02 = _mm_mul_ps(iq0,jq2);
161 qq10 = _mm_mul_ps(iq1,jq0);
162 qq11 = _mm_mul_ps(iq1,jq1);
163 qq12 = _mm_mul_ps(iq1,jq2);
164 qq20 = _mm_mul_ps(iq2,jq0);
165 qq21 = _mm_mul_ps(iq2,jq1);
166 qq22 = _mm_mul_ps(iq2,jq2);
168 /* Avoid stupid compiler warnings */
169 jnrA = jnrB = jnrC = jnrD = 0;
178 for(iidx=0;iidx<4*DIM;iidx++)
183 /* Start outer loop over neighborlists */
184 for(iidx=0; iidx<nri; iidx++)
186 /* Load shift vector for this list */
187 i_shift_offset = DIM*shiftidx[iidx];
189 /* Load limits for loop over neighbors */
190 j_index_start = jindex[iidx];
191 j_index_end = jindex[iidx+1];
193 /* Get outer coordinate index */
195 i_coord_offset = DIM*inr;
197 /* Load i particle coords and add shift vector */
198 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
199 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
201 fix0 = _mm_setzero_ps();
202 fiy0 = _mm_setzero_ps();
203 fiz0 = _mm_setzero_ps();
204 fix1 = _mm_setzero_ps();
205 fiy1 = _mm_setzero_ps();
206 fiz1 = _mm_setzero_ps();
207 fix2 = _mm_setzero_ps();
208 fiy2 = _mm_setzero_ps();
209 fiz2 = _mm_setzero_ps();
211 /* Reset potential sums */
212 velecsum = _mm_setzero_ps();
213 vvdwsum = _mm_setzero_ps();
215 /* Start inner kernel loop */
216 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
219 /* Get j neighbor index, and coordinate index */
224 j_coord_offsetA = DIM*jnrA;
225 j_coord_offsetB = DIM*jnrB;
226 j_coord_offsetC = DIM*jnrC;
227 j_coord_offsetD = DIM*jnrD;
229 /* load j atom coordinates */
230 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
231 x+j_coord_offsetC,x+j_coord_offsetD,
232 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
234 /* Calculate displacement vector */
235 dx00 = _mm_sub_ps(ix0,jx0);
236 dy00 = _mm_sub_ps(iy0,jy0);
237 dz00 = _mm_sub_ps(iz0,jz0);
238 dx01 = _mm_sub_ps(ix0,jx1);
239 dy01 = _mm_sub_ps(iy0,jy1);
240 dz01 = _mm_sub_ps(iz0,jz1);
241 dx02 = _mm_sub_ps(ix0,jx2);
242 dy02 = _mm_sub_ps(iy0,jy2);
243 dz02 = _mm_sub_ps(iz0,jz2);
244 dx10 = _mm_sub_ps(ix1,jx0);
245 dy10 = _mm_sub_ps(iy1,jy0);
246 dz10 = _mm_sub_ps(iz1,jz0);
247 dx11 = _mm_sub_ps(ix1,jx1);
248 dy11 = _mm_sub_ps(iy1,jy1);
249 dz11 = _mm_sub_ps(iz1,jz1);
250 dx12 = _mm_sub_ps(ix1,jx2);
251 dy12 = _mm_sub_ps(iy1,jy2);
252 dz12 = _mm_sub_ps(iz1,jz2);
253 dx20 = _mm_sub_ps(ix2,jx0);
254 dy20 = _mm_sub_ps(iy2,jy0);
255 dz20 = _mm_sub_ps(iz2,jz0);
256 dx21 = _mm_sub_ps(ix2,jx1);
257 dy21 = _mm_sub_ps(iy2,jy1);
258 dz21 = _mm_sub_ps(iz2,jz1);
259 dx22 = _mm_sub_ps(ix2,jx2);
260 dy22 = _mm_sub_ps(iy2,jy2);
261 dz22 = _mm_sub_ps(iz2,jz2);
263 /* Calculate squared distance and things based on it */
264 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
265 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
266 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
267 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
268 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
269 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
270 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
271 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
272 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
274 rinv00 = gmx_mm_invsqrt_ps(rsq00);
275 rinv01 = gmx_mm_invsqrt_ps(rsq01);
276 rinv02 = gmx_mm_invsqrt_ps(rsq02);
277 rinv10 = gmx_mm_invsqrt_ps(rsq10);
278 rinv11 = gmx_mm_invsqrt_ps(rsq11);
279 rinv12 = gmx_mm_invsqrt_ps(rsq12);
280 rinv20 = gmx_mm_invsqrt_ps(rsq20);
281 rinv21 = gmx_mm_invsqrt_ps(rsq21);
282 rinv22 = gmx_mm_invsqrt_ps(rsq22);
284 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
285 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
286 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
287 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
288 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
289 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
290 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
291 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
292 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
294 fjx0 = _mm_setzero_ps();
295 fjy0 = _mm_setzero_ps();
296 fjz0 = _mm_setzero_ps();
297 fjx1 = _mm_setzero_ps();
298 fjy1 = _mm_setzero_ps();
299 fjz1 = _mm_setzero_ps();
300 fjx2 = _mm_setzero_ps();
301 fjy2 = _mm_setzero_ps();
302 fjz2 = _mm_setzero_ps();
304 /**************************
305 * CALCULATE INTERACTIONS *
306 **************************/
308 r00 = _mm_mul_ps(rsq00,rinv00);
310 /* EWALD ELECTROSTATICS */
312 /* Analytical PME correction */
313 zeta2 = _mm_mul_ps(beta2,rsq00);
314 rinv3 = _mm_mul_ps(rinvsq00,rinv00);
315 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
316 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
317 felec = _mm_mul_ps(qq00,felec);
318 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
319 velec = _mm_nmacc_ps(pmecorrV,beta,rinv00);
320 velec = _mm_mul_ps(qq00,velec);
322 /* LENNARD-JONES DISPERSION/REPULSION */
324 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
325 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
326 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
327 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
328 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
330 /* Update potential sum for this i atom from the interaction with this j atom. */
331 velecsum = _mm_add_ps(velecsum,velec);
332 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
334 fscal = _mm_add_ps(felec,fvdw);
336 /* Update vectorial force */
337 fix0 = _mm_macc_ps(dx00,fscal,fix0);
338 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
339 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
341 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
342 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
343 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
345 /**************************
346 * CALCULATE INTERACTIONS *
347 **************************/
349 r01 = _mm_mul_ps(rsq01,rinv01);
351 /* EWALD ELECTROSTATICS */
353 /* Analytical PME correction */
354 zeta2 = _mm_mul_ps(beta2,rsq01);
355 rinv3 = _mm_mul_ps(rinvsq01,rinv01);
356 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
357 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
358 felec = _mm_mul_ps(qq01,felec);
359 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
360 velec = _mm_nmacc_ps(pmecorrV,beta,rinv01);
361 velec = _mm_mul_ps(qq01,velec);
363 /* Update potential sum for this i atom from the interaction with this j atom. */
364 velecsum = _mm_add_ps(velecsum,velec);
368 /* Update vectorial force */
369 fix0 = _mm_macc_ps(dx01,fscal,fix0);
370 fiy0 = _mm_macc_ps(dy01,fscal,fiy0);
371 fiz0 = _mm_macc_ps(dz01,fscal,fiz0);
373 fjx1 = _mm_macc_ps(dx01,fscal,fjx1);
374 fjy1 = _mm_macc_ps(dy01,fscal,fjy1);
375 fjz1 = _mm_macc_ps(dz01,fscal,fjz1);
377 /**************************
378 * CALCULATE INTERACTIONS *
379 **************************/
381 r02 = _mm_mul_ps(rsq02,rinv02);
383 /* EWALD ELECTROSTATICS */
385 /* Analytical PME correction */
386 zeta2 = _mm_mul_ps(beta2,rsq02);
387 rinv3 = _mm_mul_ps(rinvsq02,rinv02);
388 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
389 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
390 felec = _mm_mul_ps(qq02,felec);
391 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
392 velec = _mm_nmacc_ps(pmecorrV,beta,rinv02);
393 velec = _mm_mul_ps(qq02,velec);
395 /* Update potential sum for this i atom from the interaction with this j atom. */
396 velecsum = _mm_add_ps(velecsum,velec);
400 /* Update vectorial force */
401 fix0 = _mm_macc_ps(dx02,fscal,fix0);
402 fiy0 = _mm_macc_ps(dy02,fscal,fiy0);
403 fiz0 = _mm_macc_ps(dz02,fscal,fiz0);
405 fjx2 = _mm_macc_ps(dx02,fscal,fjx2);
406 fjy2 = _mm_macc_ps(dy02,fscal,fjy2);
407 fjz2 = _mm_macc_ps(dz02,fscal,fjz2);
409 /**************************
410 * CALCULATE INTERACTIONS *
411 **************************/
413 r10 = _mm_mul_ps(rsq10,rinv10);
415 /* EWALD ELECTROSTATICS */
417 /* Analytical PME correction */
418 zeta2 = _mm_mul_ps(beta2,rsq10);
419 rinv3 = _mm_mul_ps(rinvsq10,rinv10);
420 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
421 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
422 felec = _mm_mul_ps(qq10,felec);
423 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
424 velec = _mm_nmacc_ps(pmecorrV,beta,rinv10);
425 velec = _mm_mul_ps(qq10,velec);
427 /* Update potential sum for this i atom from the interaction with this j atom. */
428 velecsum = _mm_add_ps(velecsum,velec);
432 /* Update vectorial force */
433 fix1 = _mm_macc_ps(dx10,fscal,fix1);
434 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
435 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
437 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
438 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
439 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
441 /**************************
442 * CALCULATE INTERACTIONS *
443 **************************/
445 r11 = _mm_mul_ps(rsq11,rinv11);
447 /* EWALD ELECTROSTATICS */
449 /* Analytical PME correction */
450 zeta2 = _mm_mul_ps(beta2,rsq11);
451 rinv3 = _mm_mul_ps(rinvsq11,rinv11);
452 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
453 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
454 felec = _mm_mul_ps(qq11,felec);
455 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
456 velec = _mm_nmacc_ps(pmecorrV,beta,rinv11);
457 velec = _mm_mul_ps(qq11,velec);
459 /* Update potential sum for this i atom from the interaction with this j atom. */
460 velecsum = _mm_add_ps(velecsum,velec);
464 /* Update vectorial force */
465 fix1 = _mm_macc_ps(dx11,fscal,fix1);
466 fiy1 = _mm_macc_ps(dy11,fscal,fiy1);
467 fiz1 = _mm_macc_ps(dz11,fscal,fiz1);
469 fjx1 = _mm_macc_ps(dx11,fscal,fjx1);
470 fjy1 = _mm_macc_ps(dy11,fscal,fjy1);
471 fjz1 = _mm_macc_ps(dz11,fscal,fjz1);
473 /**************************
474 * CALCULATE INTERACTIONS *
475 **************************/
477 r12 = _mm_mul_ps(rsq12,rinv12);
479 /* EWALD ELECTROSTATICS */
481 /* Analytical PME correction */
482 zeta2 = _mm_mul_ps(beta2,rsq12);
483 rinv3 = _mm_mul_ps(rinvsq12,rinv12);
484 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
485 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
486 felec = _mm_mul_ps(qq12,felec);
487 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
488 velec = _mm_nmacc_ps(pmecorrV,beta,rinv12);
489 velec = _mm_mul_ps(qq12,velec);
491 /* Update potential sum for this i atom from the interaction with this j atom. */
492 velecsum = _mm_add_ps(velecsum,velec);
496 /* Update vectorial force */
497 fix1 = _mm_macc_ps(dx12,fscal,fix1);
498 fiy1 = _mm_macc_ps(dy12,fscal,fiy1);
499 fiz1 = _mm_macc_ps(dz12,fscal,fiz1);
501 fjx2 = _mm_macc_ps(dx12,fscal,fjx2);
502 fjy2 = _mm_macc_ps(dy12,fscal,fjy2);
503 fjz2 = _mm_macc_ps(dz12,fscal,fjz2);
505 /**************************
506 * CALCULATE INTERACTIONS *
507 **************************/
509 r20 = _mm_mul_ps(rsq20,rinv20);
511 /* EWALD ELECTROSTATICS */
513 /* Analytical PME correction */
514 zeta2 = _mm_mul_ps(beta2,rsq20);
515 rinv3 = _mm_mul_ps(rinvsq20,rinv20);
516 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
517 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
518 felec = _mm_mul_ps(qq20,felec);
519 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
520 velec = _mm_nmacc_ps(pmecorrV,beta,rinv20);
521 velec = _mm_mul_ps(qq20,velec);
523 /* Update potential sum for this i atom from the interaction with this j atom. */
524 velecsum = _mm_add_ps(velecsum,velec);
528 /* Update vectorial force */
529 fix2 = _mm_macc_ps(dx20,fscal,fix2);
530 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
531 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
533 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
534 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
535 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
537 /**************************
538 * CALCULATE INTERACTIONS *
539 **************************/
541 r21 = _mm_mul_ps(rsq21,rinv21);
543 /* EWALD ELECTROSTATICS */
545 /* Analytical PME correction */
546 zeta2 = _mm_mul_ps(beta2,rsq21);
547 rinv3 = _mm_mul_ps(rinvsq21,rinv21);
548 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
549 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
550 felec = _mm_mul_ps(qq21,felec);
551 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
552 velec = _mm_nmacc_ps(pmecorrV,beta,rinv21);
553 velec = _mm_mul_ps(qq21,velec);
555 /* Update potential sum for this i atom from the interaction with this j atom. */
556 velecsum = _mm_add_ps(velecsum,velec);
560 /* Update vectorial force */
561 fix2 = _mm_macc_ps(dx21,fscal,fix2);
562 fiy2 = _mm_macc_ps(dy21,fscal,fiy2);
563 fiz2 = _mm_macc_ps(dz21,fscal,fiz2);
565 fjx1 = _mm_macc_ps(dx21,fscal,fjx1);
566 fjy1 = _mm_macc_ps(dy21,fscal,fjy1);
567 fjz1 = _mm_macc_ps(dz21,fscal,fjz1);
569 /**************************
570 * CALCULATE INTERACTIONS *
571 **************************/
573 r22 = _mm_mul_ps(rsq22,rinv22);
575 /* EWALD ELECTROSTATICS */
577 /* Analytical PME correction */
578 zeta2 = _mm_mul_ps(beta2,rsq22);
579 rinv3 = _mm_mul_ps(rinvsq22,rinv22);
580 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
581 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
582 felec = _mm_mul_ps(qq22,felec);
583 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
584 velec = _mm_nmacc_ps(pmecorrV,beta,rinv22);
585 velec = _mm_mul_ps(qq22,velec);
587 /* Update potential sum for this i atom from the interaction with this j atom. */
588 velecsum = _mm_add_ps(velecsum,velec);
592 /* Update vectorial force */
593 fix2 = _mm_macc_ps(dx22,fscal,fix2);
594 fiy2 = _mm_macc_ps(dy22,fscal,fiy2);
595 fiz2 = _mm_macc_ps(dz22,fscal,fiz2);
597 fjx2 = _mm_macc_ps(dx22,fscal,fjx2);
598 fjy2 = _mm_macc_ps(dy22,fscal,fjy2);
599 fjz2 = _mm_macc_ps(dz22,fscal,fjz2);
601 fjptrA = f+j_coord_offsetA;
602 fjptrB = f+j_coord_offsetB;
603 fjptrC = f+j_coord_offsetC;
604 fjptrD = f+j_coord_offsetD;
606 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
607 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
609 /* Inner loop uses 273 flops */
615 /* Get j neighbor index, and coordinate index */
616 jnrlistA = jjnr[jidx];
617 jnrlistB = jjnr[jidx+1];
618 jnrlistC = jjnr[jidx+2];
619 jnrlistD = jjnr[jidx+3];
620 /* Sign of each element will be negative for non-real atoms.
621 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
622 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
624 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
625 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
626 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
627 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
628 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
629 j_coord_offsetA = DIM*jnrA;
630 j_coord_offsetB = DIM*jnrB;
631 j_coord_offsetC = DIM*jnrC;
632 j_coord_offsetD = DIM*jnrD;
634 /* load j atom coordinates */
635 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
636 x+j_coord_offsetC,x+j_coord_offsetD,
637 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
639 /* Calculate displacement vector */
640 dx00 = _mm_sub_ps(ix0,jx0);
641 dy00 = _mm_sub_ps(iy0,jy0);
642 dz00 = _mm_sub_ps(iz0,jz0);
643 dx01 = _mm_sub_ps(ix0,jx1);
644 dy01 = _mm_sub_ps(iy0,jy1);
645 dz01 = _mm_sub_ps(iz0,jz1);
646 dx02 = _mm_sub_ps(ix0,jx2);
647 dy02 = _mm_sub_ps(iy0,jy2);
648 dz02 = _mm_sub_ps(iz0,jz2);
649 dx10 = _mm_sub_ps(ix1,jx0);
650 dy10 = _mm_sub_ps(iy1,jy0);
651 dz10 = _mm_sub_ps(iz1,jz0);
652 dx11 = _mm_sub_ps(ix1,jx1);
653 dy11 = _mm_sub_ps(iy1,jy1);
654 dz11 = _mm_sub_ps(iz1,jz1);
655 dx12 = _mm_sub_ps(ix1,jx2);
656 dy12 = _mm_sub_ps(iy1,jy2);
657 dz12 = _mm_sub_ps(iz1,jz2);
658 dx20 = _mm_sub_ps(ix2,jx0);
659 dy20 = _mm_sub_ps(iy2,jy0);
660 dz20 = _mm_sub_ps(iz2,jz0);
661 dx21 = _mm_sub_ps(ix2,jx1);
662 dy21 = _mm_sub_ps(iy2,jy1);
663 dz21 = _mm_sub_ps(iz2,jz1);
664 dx22 = _mm_sub_ps(ix2,jx2);
665 dy22 = _mm_sub_ps(iy2,jy2);
666 dz22 = _mm_sub_ps(iz2,jz2);
668 /* Calculate squared distance and things based on it */
669 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
670 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
671 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
672 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
673 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
674 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
675 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
676 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
677 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
679 rinv00 = gmx_mm_invsqrt_ps(rsq00);
680 rinv01 = gmx_mm_invsqrt_ps(rsq01);
681 rinv02 = gmx_mm_invsqrt_ps(rsq02);
682 rinv10 = gmx_mm_invsqrt_ps(rsq10);
683 rinv11 = gmx_mm_invsqrt_ps(rsq11);
684 rinv12 = gmx_mm_invsqrt_ps(rsq12);
685 rinv20 = gmx_mm_invsqrt_ps(rsq20);
686 rinv21 = gmx_mm_invsqrt_ps(rsq21);
687 rinv22 = gmx_mm_invsqrt_ps(rsq22);
689 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
690 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
691 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
692 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
693 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
694 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
695 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
696 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
697 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
699 fjx0 = _mm_setzero_ps();
700 fjy0 = _mm_setzero_ps();
701 fjz0 = _mm_setzero_ps();
702 fjx1 = _mm_setzero_ps();
703 fjy1 = _mm_setzero_ps();
704 fjz1 = _mm_setzero_ps();
705 fjx2 = _mm_setzero_ps();
706 fjy2 = _mm_setzero_ps();
707 fjz2 = _mm_setzero_ps();
709 /**************************
710 * CALCULATE INTERACTIONS *
711 **************************/
713 r00 = _mm_mul_ps(rsq00,rinv00);
714 r00 = _mm_andnot_ps(dummy_mask,r00);
716 /* EWALD ELECTROSTATICS */
718 /* Analytical PME correction */
719 zeta2 = _mm_mul_ps(beta2,rsq00);
720 rinv3 = _mm_mul_ps(rinvsq00,rinv00);
721 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
722 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
723 felec = _mm_mul_ps(qq00,felec);
724 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
725 velec = _mm_nmacc_ps(pmecorrV,beta,rinv00);
726 velec = _mm_mul_ps(qq00,velec);
728 /* LENNARD-JONES DISPERSION/REPULSION */
730 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
731 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
732 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
733 vvdw = _mm_msub_ps(vvdw12,one_twelfth,_mm_mul_ps(vvdw6,one_sixth));
734 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
736 /* Update potential sum for this i atom from the interaction with this j atom. */
737 velec = _mm_andnot_ps(dummy_mask,velec);
738 velecsum = _mm_add_ps(velecsum,velec);
739 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
740 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
742 fscal = _mm_add_ps(felec,fvdw);
744 fscal = _mm_andnot_ps(dummy_mask,fscal);
746 /* Update vectorial force */
747 fix0 = _mm_macc_ps(dx00,fscal,fix0);
748 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
749 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
751 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
752 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
753 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
755 /**************************
756 * CALCULATE INTERACTIONS *
757 **************************/
759 r01 = _mm_mul_ps(rsq01,rinv01);
760 r01 = _mm_andnot_ps(dummy_mask,r01);
762 /* EWALD ELECTROSTATICS */
764 /* Analytical PME correction */
765 zeta2 = _mm_mul_ps(beta2,rsq01);
766 rinv3 = _mm_mul_ps(rinvsq01,rinv01);
767 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
768 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
769 felec = _mm_mul_ps(qq01,felec);
770 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
771 velec = _mm_nmacc_ps(pmecorrV,beta,rinv01);
772 velec = _mm_mul_ps(qq01,velec);
774 /* Update potential sum for this i atom from the interaction with this j atom. */
775 velec = _mm_andnot_ps(dummy_mask,velec);
776 velecsum = _mm_add_ps(velecsum,velec);
780 fscal = _mm_andnot_ps(dummy_mask,fscal);
782 /* Update vectorial force */
783 fix0 = _mm_macc_ps(dx01,fscal,fix0);
784 fiy0 = _mm_macc_ps(dy01,fscal,fiy0);
785 fiz0 = _mm_macc_ps(dz01,fscal,fiz0);
787 fjx1 = _mm_macc_ps(dx01,fscal,fjx1);
788 fjy1 = _mm_macc_ps(dy01,fscal,fjy1);
789 fjz1 = _mm_macc_ps(dz01,fscal,fjz1);
791 /**************************
792 * CALCULATE INTERACTIONS *
793 **************************/
795 r02 = _mm_mul_ps(rsq02,rinv02);
796 r02 = _mm_andnot_ps(dummy_mask,r02);
798 /* EWALD ELECTROSTATICS */
800 /* Analytical PME correction */
801 zeta2 = _mm_mul_ps(beta2,rsq02);
802 rinv3 = _mm_mul_ps(rinvsq02,rinv02);
803 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
804 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
805 felec = _mm_mul_ps(qq02,felec);
806 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
807 velec = _mm_nmacc_ps(pmecorrV,beta,rinv02);
808 velec = _mm_mul_ps(qq02,velec);
810 /* Update potential sum for this i atom from the interaction with this j atom. */
811 velec = _mm_andnot_ps(dummy_mask,velec);
812 velecsum = _mm_add_ps(velecsum,velec);
816 fscal = _mm_andnot_ps(dummy_mask,fscal);
818 /* Update vectorial force */
819 fix0 = _mm_macc_ps(dx02,fscal,fix0);
820 fiy0 = _mm_macc_ps(dy02,fscal,fiy0);
821 fiz0 = _mm_macc_ps(dz02,fscal,fiz0);
823 fjx2 = _mm_macc_ps(dx02,fscal,fjx2);
824 fjy2 = _mm_macc_ps(dy02,fscal,fjy2);
825 fjz2 = _mm_macc_ps(dz02,fscal,fjz2);
827 /**************************
828 * CALCULATE INTERACTIONS *
829 **************************/
831 r10 = _mm_mul_ps(rsq10,rinv10);
832 r10 = _mm_andnot_ps(dummy_mask,r10);
834 /* EWALD ELECTROSTATICS */
836 /* Analytical PME correction */
837 zeta2 = _mm_mul_ps(beta2,rsq10);
838 rinv3 = _mm_mul_ps(rinvsq10,rinv10);
839 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
840 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
841 felec = _mm_mul_ps(qq10,felec);
842 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
843 velec = _mm_nmacc_ps(pmecorrV,beta,rinv10);
844 velec = _mm_mul_ps(qq10,velec);
846 /* Update potential sum for this i atom from the interaction with this j atom. */
847 velec = _mm_andnot_ps(dummy_mask,velec);
848 velecsum = _mm_add_ps(velecsum,velec);
852 fscal = _mm_andnot_ps(dummy_mask,fscal);
854 /* Update vectorial force */
855 fix1 = _mm_macc_ps(dx10,fscal,fix1);
856 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
857 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
859 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
860 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
861 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
863 /**************************
864 * CALCULATE INTERACTIONS *
865 **************************/
867 r11 = _mm_mul_ps(rsq11,rinv11);
868 r11 = _mm_andnot_ps(dummy_mask,r11);
870 /* EWALD ELECTROSTATICS */
872 /* Analytical PME correction */
873 zeta2 = _mm_mul_ps(beta2,rsq11);
874 rinv3 = _mm_mul_ps(rinvsq11,rinv11);
875 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
876 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
877 felec = _mm_mul_ps(qq11,felec);
878 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
879 velec = _mm_nmacc_ps(pmecorrV,beta,rinv11);
880 velec = _mm_mul_ps(qq11,velec);
882 /* Update potential sum for this i atom from the interaction with this j atom. */
883 velec = _mm_andnot_ps(dummy_mask,velec);
884 velecsum = _mm_add_ps(velecsum,velec);
888 fscal = _mm_andnot_ps(dummy_mask,fscal);
890 /* Update vectorial force */
891 fix1 = _mm_macc_ps(dx11,fscal,fix1);
892 fiy1 = _mm_macc_ps(dy11,fscal,fiy1);
893 fiz1 = _mm_macc_ps(dz11,fscal,fiz1);
895 fjx1 = _mm_macc_ps(dx11,fscal,fjx1);
896 fjy1 = _mm_macc_ps(dy11,fscal,fjy1);
897 fjz1 = _mm_macc_ps(dz11,fscal,fjz1);
899 /**************************
900 * CALCULATE INTERACTIONS *
901 **************************/
903 r12 = _mm_mul_ps(rsq12,rinv12);
904 r12 = _mm_andnot_ps(dummy_mask,r12);
906 /* EWALD ELECTROSTATICS */
908 /* Analytical PME correction */
909 zeta2 = _mm_mul_ps(beta2,rsq12);
910 rinv3 = _mm_mul_ps(rinvsq12,rinv12);
911 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
912 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
913 felec = _mm_mul_ps(qq12,felec);
914 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
915 velec = _mm_nmacc_ps(pmecorrV,beta,rinv12);
916 velec = _mm_mul_ps(qq12,velec);
918 /* Update potential sum for this i atom from the interaction with this j atom. */
919 velec = _mm_andnot_ps(dummy_mask,velec);
920 velecsum = _mm_add_ps(velecsum,velec);
924 fscal = _mm_andnot_ps(dummy_mask,fscal);
926 /* Update vectorial force */
927 fix1 = _mm_macc_ps(dx12,fscal,fix1);
928 fiy1 = _mm_macc_ps(dy12,fscal,fiy1);
929 fiz1 = _mm_macc_ps(dz12,fscal,fiz1);
931 fjx2 = _mm_macc_ps(dx12,fscal,fjx2);
932 fjy2 = _mm_macc_ps(dy12,fscal,fjy2);
933 fjz2 = _mm_macc_ps(dz12,fscal,fjz2);
935 /**************************
936 * CALCULATE INTERACTIONS *
937 **************************/
939 r20 = _mm_mul_ps(rsq20,rinv20);
940 r20 = _mm_andnot_ps(dummy_mask,r20);
942 /* EWALD ELECTROSTATICS */
944 /* Analytical PME correction */
945 zeta2 = _mm_mul_ps(beta2,rsq20);
946 rinv3 = _mm_mul_ps(rinvsq20,rinv20);
947 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
948 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
949 felec = _mm_mul_ps(qq20,felec);
950 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
951 velec = _mm_nmacc_ps(pmecorrV,beta,rinv20);
952 velec = _mm_mul_ps(qq20,velec);
954 /* Update potential sum for this i atom from the interaction with this j atom. */
955 velec = _mm_andnot_ps(dummy_mask,velec);
956 velecsum = _mm_add_ps(velecsum,velec);
960 fscal = _mm_andnot_ps(dummy_mask,fscal);
962 /* Update vectorial force */
963 fix2 = _mm_macc_ps(dx20,fscal,fix2);
964 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
965 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
967 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
968 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
969 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
971 /**************************
972 * CALCULATE INTERACTIONS *
973 **************************/
975 r21 = _mm_mul_ps(rsq21,rinv21);
976 r21 = _mm_andnot_ps(dummy_mask,r21);
978 /* EWALD ELECTROSTATICS */
980 /* Analytical PME correction */
981 zeta2 = _mm_mul_ps(beta2,rsq21);
982 rinv3 = _mm_mul_ps(rinvsq21,rinv21);
983 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
984 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
985 felec = _mm_mul_ps(qq21,felec);
986 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
987 velec = _mm_nmacc_ps(pmecorrV,beta,rinv21);
988 velec = _mm_mul_ps(qq21,velec);
990 /* Update potential sum for this i atom from the interaction with this j atom. */
991 velec = _mm_andnot_ps(dummy_mask,velec);
992 velecsum = _mm_add_ps(velecsum,velec);
996 fscal = _mm_andnot_ps(dummy_mask,fscal);
998 /* Update vectorial force */
999 fix2 = _mm_macc_ps(dx21,fscal,fix2);
1000 fiy2 = _mm_macc_ps(dy21,fscal,fiy2);
1001 fiz2 = _mm_macc_ps(dz21,fscal,fiz2);
1003 fjx1 = _mm_macc_ps(dx21,fscal,fjx1);
1004 fjy1 = _mm_macc_ps(dy21,fscal,fjy1);
1005 fjz1 = _mm_macc_ps(dz21,fscal,fjz1);
1007 /**************************
1008 * CALCULATE INTERACTIONS *
1009 **************************/
1011 r22 = _mm_mul_ps(rsq22,rinv22);
1012 r22 = _mm_andnot_ps(dummy_mask,r22);
1014 /* EWALD ELECTROSTATICS */
1016 /* Analytical PME correction */
1017 zeta2 = _mm_mul_ps(beta2,rsq22);
1018 rinv3 = _mm_mul_ps(rinvsq22,rinv22);
1019 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1020 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1021 felec = _mm_mul_ps(qq22,felec);
1022 pmecorrV = gmx_mm_pmecorrV_ps(zeta2);
1023 velec = _mm_nmacc_ps(pmecorrV,beta,rinv22);
1024 velec = _mm_mul_ps(qq22,velec);
1026 /* Update potential sum for this i atom from the interaction with this j atom. */
1027 velec = _mm_andnot_ps(dummy_mask,velec);
1028 velecsum = _mm_add_ps(velecsum,velec);
1032 fscal = _mm_andnot_ps(dummy_mask,fscal);
1034 /* Update vectorial force */
1035 fix2 = _mm_macc_ps(dx22,fscal,fix2);
1036 fiy2 = _mm_macc_ps(dy22,fscal,fiy2);
1037 fiz2 = _mm_macc_ps(dz22,fscal,fiz2);
1039 fjx2 = _mm_macc_ps(dx22,fscal,fjx2);
1040 fjy2 = _mm_macc_ps(dy22,fscal,fjy2);
1041 fjz2 = _mm_macc_ps(dz22,fscal,fjz2);
1043 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1044 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1045 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1046 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1048 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1049 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1051 /* Inner loop uses 282 flops */
1054 /* End of innermost loop */
1056 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1057 f+i_coord_offset,fshift+i_shift_offset);
1060 /* Update potential energies */
1061 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1062 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1064 /* Increment number of inner iterations */
1065 inneriter += j_index_end - j_index_start;
1067 /* Outer loop uses 20 flops */
1070 /* Increment number of outer iterations */
1073 /* Update outer/inner flops */
1075 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*282);
1078 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW3W3_F_avx_128_fma_single
1079 * Electrostatics interaction: Ewald
1080 * VdW interaction: LennardJones
1081 * Geometry: Water3-Water3
1082 * Calculate force/pot: Force
1085 nb_kernel_ElecEw_VdwLJ_GeomW3W3_F_avx_128_fma_single
1086 (t_nblist * gmx_restrict nlist,
1087 rvec * gmx_restrict xx,
1088 rvec * gmx_restrict ff,
1089 t_forcerec * gmx_restrict fr,
1090 t_mdatoms * gmx_restrict mdatoms,
1091 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1092 t_nrnb * gmx_restrict nrnb)
1094 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1095 * just 0 for non-waters.
1096 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
1097 * jnr indices corresponding to data put in the four positions in the SIMD register.
1099 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1100 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1101 int jnrA,jnrB,jnrC,jnrD;
1102 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1103 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1104 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1105 real rcutoff_scalar;
1106 real *shiftvec,*fshift,*x,*f;
1107 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
1108 real scratch[4*DIM];
1109 __m128 fscal,rcutoff,rcutoff2,jidxall;
1111 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1113 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1115 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1116 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1117 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1118 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1119 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1120 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1121 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1122 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1123 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1124 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1125 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1126 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1127 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1128 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1129 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1130 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1131 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
1134 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1137 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
1138 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
1140 __m128 ewtabscale,eweps,twoeweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1141 __m128 beta,beta2,beta3,zeta2,pmecorrF,pmecorrV,rinv3;
1143 __m128 dummy_mask,cutoff_mask;
1144 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
1145 __m128 one = _mm_set1_ps(1.0);
1146 __m128 two = _mm_set1_ps(2.0);
1152 jindex = nlist->jindex;
1154 shiftidx = nlist->shift;
1156 shiftvec = fr->shift_vec[0];
1157 fshift = fr->fshift[0];
1158 facel = _mm_set1_ps(fr->epsfac);
1159 charge = mdatoms->chargeA;
1160 nvdwtype = fr->ntype;
1161 vdwparam = fr->nbfp;
1162 vdwtype = mdatoms->typeA;
1164 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
1165 beta = _mm_set1_ps(fr->ic->ewaldcoeff_q);
1166 beta2 = _mm_mul_ps(beta,beta);
1167 beta3 = _mm_mul_ps(beta,beta2);
1168 ewtab = fr->ic->tabq_coul_F;
1169 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
1170 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
1172 /* Setup water-specific parameters */
1173 inr = nlist->iinr[0];
1174 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
1175 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
1176 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
1177 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1179 jq0 = _mm_set1_ps(charge[inr+0]);
1180 jq1 = _mm_set1_ps(charge[inr+1]);
1181 jq2 = _mm_set1_ps(charge[inr+2]);
1182 vdwjidx0A = 2*vdwtype[inr+0];
1183 qq00 = _mm_mul_ps(iq0,jq0);
1184 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
1185 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
1186 qq01 = _mm_mul_ps(iq0,jq1);
1187 qq02 = _mm_mul_ps(iq0,jq2);
1188 qq10 = _mm_mul_ps(iq1,jq0);
1189 qq11 = _mm_mul_ps(iq1,jq1);
1190 qq12 = _mm_mul_ps(iq1,jq2);
1191 qq20 = _mm_mul_ps(iq2,jq0);
1192 qq21 = _mm_mul_ps(iq2,jq1);
1193 qq22 = _mm_mul_ps(iq2,jq2);
1195 /* Avoid stupid compiler warnings */
1196 jnrA = jnrB = jnrC = jnrD = 0;
1197 j_coord_offsetA = 0;
1198 j_coord_offsetB = 0;
1199 j_coord_offsetC = 0;
1200 j_coord_offsetD = 0;
1205 for(iidx=0;iidx<4*DIM;iidx++)
1207 scratch[iidx] = 0.0;
1210 /* Start outer loop over neighborlists */
1211 for(iidx=0; iidx<nri; iidx++)
1213 /* Load shift vector for this list */
1214 i_shift_offset = DIM*shiftidx[iidx];
1216 /* Load limits for loop over neighbors */
1217 j_index_start = jindex[iidx];
1218 j_index_end = jindex[iidx+1];
1220 /* Get outer coordinate index */
1222 i_coord_offset = DIM*inr;
1224 /* Load i particle coords and add shift vector */
1225 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1226 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1228 fix0 = _mm_setzero_ps();
1229 fiy0 = _mm_setzero_ps();
1230 fiz0 = _mm_setzero_ps();
1231 fix1 = _mm_setzero_ps();
1232 fiy1 = _mm_setzero_ps();
1233 fiz1 = _mm_setzero_ps();
1234 fix2 = _mm_setzero_ps();
1235 fiy2 = _mm_setzero_ps();
1236 fiz2 = _mm_setzero_ps();
1238 /* Start inner kernel loop */
1239 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1242 /* Get j neighbor index, and coordinate index */
1244 jnrB = jjnr[jidx+1];
1245 jnrC = jjnr[jidx+2];
1246 jnrD = jjnr[jidx+3];
1247 j_coord_offsetA = DIM*jnrA;
1248 j_coord_offsetB = DIM*jnrB;
1249 j_coord_offsetC = DIM*jnrC;
1250 j_coord_offsetD = DIM*jnrD;
1252 /* load j atom coordinates */
1253 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1254 x+j_coord_offsetC,x+j_coord_offsetD,
1255 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1257 /* Calculate displacement vector */
1258 dx00 = _mm_sub_ps(ix0,jx0);
1259 dy00 = _mm_sub_ps(iy0,jy0);
1260 dz00 = _mm_sub_ps(iz0,jz0);
1261 dx01 = _mm_sub_ps(ix0,jx1);
1262 dy01 = _mm_sub_ps(iy0,jy1);
1263 dz01 = _mm_sub_ps(iz0,jz1);
1264 dx02 = _mm_sub_ps(ix0,jx2);
1265 dy02 = _mm_sub_ps(iy0,jy2);
1266 dz02 = _mm_sub_ps(iz0,jz2);
1267 dx10 = _mm_sub_ps(ix1,jx0);
1268 dy10 = _mm_sub_ps(iy1,jy0);
1269 dz10 = _mm_sub_ps(iz1,jz0);
1270 dx11 = _mm_sub_ps(ix1,jx1);
1271 dy11 = _mm_sub_ps(iy1,jy1);
1272 dz11 = _mm_sub_ps(iz1,jz1);
1273 dx12 = _mm_sub_ps(ix1,jx2);
1274 dy12 = _mm_sub_ps(iy1,jy2);
1275 dz12 = _mm_sub_ps(iz1,jz2);
1276 dx20 = _mm_sub_ps(ix2,jx0);
1277 dy20 = _mm_sub_ps(iy2,jy0);
1278 dz20 = _mm_sub_ps(iz2,jz0);
1279 dx21 = _mm_sub_ps(ix2,jx1);
1280 dy21 = _mm_sub_ps(iy2,jy1);
1281 dz21 = _mm_sub_ps(iz2,jz1);
1282 dx22 = _mm_sub_ps(ix2,jx2);
1283 dy22 = _mm_sub_ps(iy2,jy2);
1284 dz22 = _mm_sub_ps(iz2,jz2);
1286 /* Calculate squared distance and things based on it */
1287 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1288 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1289 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1290 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1291 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1292 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1293 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1294 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1295 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1297 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1298 rinv01 = gmx_mm_invsqrt_ps(rsq01);
1299 rinv02 = gmx_mm_invsqrt_ps(rsq02);
1300 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1301 rinv11 = gmx_mm_invsqrt_ps(rsq11);
1302 rinv12 = gmx_mm_invsqrt_ps(rsq12);
1303 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1304 rinv21 = gmx_mm_invsqrt_ps(rsq21);
1305 rinv22 = gmx_mm_invsqrt_ps(rsq22);
1307 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1308 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1309 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1310 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1311 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1312 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1313 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1314 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1315 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1317 fjx0 = _mm_setzero_ps();
1318 fjy0 = _mm_setzero_ps();
1319 fjz0 = _mm_setzero_ps();
1320 fjx1 = _mm_setzero_ps();
1321 fjy1 = _mm_setzero_ps();
1322 fjz1 = _mm_setzero_ps();
1323 fjx2 = _mm_setzero_ps();
1324 fjy2 = _mm_setzero_ps();
1325 fjz2 = _mm_setzero_ps();
1327 /**************************
1328 * CALCULATE INTERACTIONS *
1329 **************************/
1331 r00 = _mm_mul_ps(rsq00,rinv00);
1333 /* EWALD ELECTROSTATICS */
1335 /* Analytical PME correction */
1336 zeta2 = _mm_mul_ps(beta2,rsq00);
1337 rinv3 = _mm_mul_ps(rinvsq00,rinv00);
1338 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1339 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1340 felec = _mm_mul_ps(qq00,felec);
1342 /* LENNARD-JONES DISPERSION/REPULSION */
1344 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1345 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1347 fscal = _mm_add_ps(felec,fvdw);
1349 /* Update vectorial force */
1350 fix0 = _mm_macc_ps(dx00,fscal,fix0);
1351 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
1352 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
1354 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
1355 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
1356 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
1358 /**************************
1359 * CALCULATE INTERACTIONS *
1360 **************************/
1362 r01 = _mm_mul_ps(rsq01,rinv01);
1364 /* EWALD ELECTROSTATICS */
1366 /* Analytical PME correction */
1367 zeta2 = _mm_mul_ps(beta2,rsq01);
1368 rinv3 = _mm_mul_ps(rinvsq01,rinv01);
1369 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1370 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1371 felec = _mm_mul_ps(qq01,felec);
1375 /* Update vectorial force */
1376 fix0 = _mm_macc_ps(dx01,fscal,fix0);
1377 fiy0 = _mm_macc_ps(dy01,fscal,fiy0);
1378 fiz0 = _mm_macc_ps(dz01,fscal,fiz0);
1380 fjx1 = _mm_macc_ps(dx01,fscal,fjx1);
1381 fjy1 = _mm_macc_ps(dy01,fscal,fjy1);
1382 fjz1 = _mm_macc_ps(dz01,fscal,fjz1);
1384 /**************************
1385 * CALCULATE INTERACTIONS *
1386 **************************/
1388 r02 = _mm_mul_ps(rsq02,rinv02);
1390 /* EWALD ELECTROSTATICS */
1392 /* Analytical PME correction */
1393 zeta2 = _mm_mul_ps(beta2,rsq02);
1394 rinv3 = _mm_mul_ps(rinvsq02,rinv02);
1395 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1396 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1397 felec = _mm_mul_ps(qq02,felec);
1401 /* Update vectorial force */
1402 fix0 = _mm_macc_ps(dx02,fscal,fix0);
1403 fiy0 = _mm_macc_ps(dy02,fscal,fiy0);
1404 fiz0 = _mm_macc_ps(dz02,fscal,fiz0);
1406 fjx2 = _mm_macc_ps(dx02,fscal,fjx2);
1407 fjy2 = _mm_macc_ps(dy02,fscal,fjy2);
1408 fjz2 = _mm_macc_ps(dz02,fscal,fjz2);
1410 /**************************
1411 * CALCULATE INTERACTIONS *
1412 **************************/
1414 r10 = _mm_mul_ps(rsq10,rinv10);
1416 /* EWALD ELECTROSTATICS */
1418 /* Analytical PME correction */
1419 zeta2 = _mm_mul_ps(beta2,rsq10);
1420 rinv3 = _mm_mul_ps(rinvsq10,rinv10);
1421 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1422 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1423 felec = _mm_mul_ps(qq10,felec);
1427 /* Update vectorial force */
1428 fix1 = _mm_macc_ps(dx10,fscal,fix1);
1429 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
1430 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
1432 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
1433 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
1434 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
1436 /**************************
1437 * CALCULATE INTERACTIONS *
1438 **************************/
1440 r11 = _mm_mul_ps(rsq11,rinv11);
1442 /* EWALD ELECTROSTATICS */
1444 /* Analytical PME correction */
1445 zeta2 = _mm_mul_ps(beta2,rsq11);
1446 rinv3 = _mm_mul_ps(rinvsq11,rinv11);
1447 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1448 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1449 felec = _mm_mul_ps(qq11,felec);
1453 /* Update vectorial force */
1454 fix1 = _mm_macc_ps(dx11,fscal,fix1);
1455 fiy1 = _mm_macc_ps(dy11,fscal,fiy1);
1456 fiz1 = _mm_macc_ps(dz11,fscal,fiz1);
1458 fjx1 = _mm_macc_ps(dx11,fscal,fjx1);
1459 fjy1 = _mm_macc_ps(dy11,fscal,fjy1);
1460 fjz1 = _mm_macc_ps(dz11,fscal,fjz1);
1462 /**************************
1463 * CALCULATE INTERACTIONS *
1464 **************************/
1466 r12 = _mm_mul_ps(rsq12,rinv12);
1468 /* EWALD ELECTROSTATICS */
1470 /* Analytical PME correction */
1471 zeta2 = _mm_mul_ps(beta2,rsq12);
1472 rinv3 = _mm_mul_ps(rinvsq12,rinv12);
1473 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1474 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1475 felec = _mm_mul_ps(qq12,felec);
1479 /* Update vectorial force */
1480 fix1 = _mm_macc_ps(dx12,fscal,fix1);
1481 fiy1 = _mm_macc_ps(dy12,fscal,fiy1);
1482 fiz1 = _mm_macc_ps(dz12,fscal,fiz1);
1484 fjx2 = _mm_macc_ps(dx12,fscal,fjx2);
1485 fjy2 = _mm_macc_ps(dy12,fscal,fjy2);
1486 fjz2 = _mm_macc_ps(dz12,fscal,fjz2);
1488 /**************************
1489 * CALCULATE INTERACTIONS *
1490 **************************/
1492 r20 = _mm_mul_ps(rsq20,rinv20);
1494 /* EWALD ELECTROSTATICS */
1496 /* Analytical PME correction */
1497 zeta2 = _mm_mul_ps(beta2,rsq20);
1498 rinv3 = _mm_mul_ps(rinvsq20,rinv20);
1499 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1500 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1501 felec = _mm_mul_ps(qq20,felec);
1505 /* Update vectorial force */
1506 fix2 = _mm_macc_ps(dx20,fscal,fix2);
1507 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
1508 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
1510 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
1511 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
1512 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
1514 /**************************
1515 * CALCULATE INTERACTIONS *
1516 **************************/
1518 r21 = _mm_mul_ps(rsq21,rinv21);
1520 /* EWALD ELECTROSTATICS */
1522 /* Analytical PME correction */
1523 zeta2 = _mm_mul_ps(beta2,rsq21);
1524 rinv3 = _mm_mul_ps(rinvsq21,rinv21);
1525 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1526 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1527 felec = _mm_mul_ps(qq21,felec);
1531 /* Update vectorial force */
1532 fix2 = _mm_macc_ps(dx21,fscal,fix2);
1533 fiy2 = _mm_macc_ps(dy21,fscal,fiy2);
1534 fiz2 = _mm_macc_ps(dz21,fscal,fiz2);
1536 fjx1 = _mm_macc_ps(dx21,fscal,fjx1);
1537 fjy1 = _mm_macc_ps(dy21,fscal,fjy1);
1538 fjz1 = _mm_macc_ps(dz21,fscal,fjz1);
1540 /**************************
1541 * CALCULATE INTERACTIONS *
1542 **************************/
1544 r22 = _mm_mul_ps(rsq22,rinv22);
1546 /* EWALD ELECTROSTATICS */
1548 /* Analytical PME correction */
1549 zeta2 = _mm_mul_ps(beta2,rsq22);
1550 rinv3 = _mm_mul_ps(rinvsq22,rinv22);
1551 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1552 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1553 felec = _mm_mul_ps(qq22,felec);
1557 /* Update vectorial force */
1558 fix2 = _mm_macc_ps(dx22,fscal,fix2);
1559 fiy2 = _mm_macc_ps(dy22,fscal,fiy2);
1560 fiz2 = _mm_macc_ps(dz22,fscal,fiz2);
1562 fjx2 = _mm_macc_ps(dx22,fscal,fjx2);
1563 fjy2 = _mm_macc_ps(dy22,fscal,fjy2);
1564 fjz2 = _mm_macc_ps(dz22,fscal,fjz2);
1566 fjptrA = f+j_coord_offsetA;
1567 fjptrB = f+j_coord_offsetB;
1568 fjptrC = f+j_coord_offsetC;
1569 fjptrD = f+j_coord_offsetD;
1571 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1572 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1574 /* Inner loop uses 259 flops */
1577 if(jidx<j_index_end)
1580 /* Get j neighbor index, and coordinate index */
1581 jnrlistA = jjnr[jidx];
1582 jnrlistB = jjnr[jidx+1];
1583 jnrlistC = jjnr[jidx+2];
1584 jnrlistD = jjnr[jidx+3];
1585 /* Sign of each element will be negative for non-real atoms.
1586 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1587 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1589 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1590 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1591 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1592 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1593 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1594 j_coord_offsetA = DIM*jnrA;
1595 j_coord_offsetB = DIM*jnrB;
1596 j_coord_offsetC = DIM*jnrC;
1597 j_coord_offsetD = DIM*jnrD;
1599 /* load j atom coordinates */
1600 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1601 x+j_coord_offsetC,x+j_coord_offsetD,
1602 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1604 /* Calculate displacement vector */
1605 dx00 = _mm_sub_ps(ix0,jx0);
1606 dy00 = _mm_sub_ps(iy0,jy0);
1607 dz00 = _mm_sub_ps(iz0,jz0);
1608 dx01 = _mm_sub_ps(ix0,jx1);
1609 dy01 = _mm_sub_ps(iy0,jy1);
1610 dz01 = _mm_sub_ps(iz0,jz1);
1611 dx02 = _mm_sub_ps(ix0,jx2);
1612 dy02 = _mm_sub_ps(iy0,jy2);
1613 dz02 = _mm_sub_ps(iz0,jz2);
1614 dx10 = _mm_sub_ps(ix1,jx0);
1615 dy10 = _mm_sub_ps(iy1,jy0);
1616 dz10 = _mm_sub_ps(iz1,jz0);
1617 dx11 = _mm_sub_ps(ix1,jx1);
1618 dy11 = _mm_sub_ps(iy1,jy1);
1619 dz11 = _mm_sub_ps(iz1,jz1);
1620 dx12 = _mm_sub_ps(ix1,jx2);
1621 dy12 = _mm_sub_ps(iy1,jy2);
1622 dz12 = _mm_sub_ps(iz1,jz2);
1623 dx20 = _mm_sub_ps(ix2,jx0);
1624 dy20 = _mm_sub_ps(iy2,jy0);
1625 dz20 = _mm_sub_ps(iz2,jz0);
1626 dx21 = _mm_sub_ps(ix2,jx1);
1627 dy21 = _mm_sub_ps(iy2,jy1);
1628 dz21 = _mm_sub_ps(iz2,jz1);
1629 dx22 = _mm_sub_ps(ix2,jx2);
1630 dy22 = _mm_sub_ps(iy2,jy2);
1631 dz22 = _mm_sub_ps(iz2,jz2);
1633 /* Calculate squared distance and things based on it */
1634 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1635 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1636 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1637 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1638 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1639 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1640 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1641 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1642 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1644 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1645 rinv01 = gmx_mm_invsqrt_ps(rsq01);
1646 rinv02 = gmx_mm_invsqrt_ps(rsq02);
1647 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1648 rinv11 = gmx_mm_invsqrt_ps(rsq11);
1649 rinv12 = gmx_mm_invsqrt_ps(rsq12);
1650 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1651 rinv21 = gmx_mm_invsqrt_ps(rsq21);
1652 rinv22 = gmx_mm_invsqrt_ps(rsq22);
1654 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1655 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1656 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1657 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1658 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1659 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1660 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1661 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1662 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1664 fjx0 = _mm_setzero_ps();
1665 fjy0 = _mm_setzero_ps();
1666 fjz0 = _mm_setzero_ps();
1667 fjx1 = _mm_setzero_ps();
1668 fjy1 = _mm_setzero_ps();
1669 fjz1 = _mm_setzero_ps();
1670 fjx2 = _mm_setzero_ps();
1671 fjy2 = _mm_setzero_ps();
1672 fjz2 = _mm_setzero_ps();
1674 /**************************
1675 * CALCULATE INTERACTIONS *
1676 **************************/
1678 r00 = _mm_mul_ps(rsq00,rinv00);
1679 r00 = _mm_andnot_ps(dummy_mask,r00);
1681 /* EWALD ELECTROSTATICS */
1683 /* Analytical PME correction */
1684 zeta2 = _mm_mul_ps(beta2,rsq00);
1685 rinv3 = _mm_mul_ps(rinvsq00,rinv00);
1686 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1687 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1688 felec = _mm_mul_ps(qq00,felec);
1690 /* LENNARD-JONES DISPERSION/REPULSION */
1692 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1693 fvdw = _mm_mul_ps(_mm_msub_ps(c12_00,rinvsix,c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1695 fscal = _mm_add_ps(felec,fvdw);
1697 fscal = _mm_andnot_ps(dummy_mask,fscal);
1699 /* Update vectorial force */
1700 fix0 = _mm_macc_ps(dx00,fscal,fix0);
1701 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
1702 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
1704 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
1705 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
1706 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
1708 /**************************
1709 * CALCULATE INTERACTIONS *
1710 **************************/
1712 r01 = _mm_mul_ps(rsq01,rinv01);
1713 r01 = _mm_andnot_ps(dummy_mask,r01);
1715 /* EWALD ELECTROSTATICS */
1717 /* Analytical PME correction */
1718 zeta2 = _mm_mul_ps(beta2,rsq01);
1719 rinv3 = _mm_mul_ps(rinvsq01,rinv01);
1720 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1721 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1722 felec = _mm_mul_ps(qq01,felec);
1726 fscal = _mm_andnot_ps(dummy_mask,fscal);
1728 /* Update vectorial force */
1729 fix0 = _mm_macc_ps(dx01,fscal,fix0);
1730 fiy0 = _mm_macc_ps(dy01,fscal,fiy0);
1731 fiz0 = _mm_macc_ps(dz01,fscal,fiz0);
1733 fjx1 = _mm_macc_ps(dx01,fscal,fjx1);
1734 fjy1 = _mm_macc_ps(dy01,fscal,fjy1);
1735 fjz1 = _mm_macc_ps(dz01,fscal,fjz1);
1737 /**************************
1738 * CALCULATE INTERACTIONS *
1739 **************************/
1741 r02 = _mm_mul_ps(rsq02,rinv02);
1742 r02 = _mm_andnot_ps(dummy_mask,r02);
1744 /* EWALD ELECTROSTATICS */
1746 /* Analytical PME correction */
1747 zeta2 = _mm_mul_ps(beta2,rsq02);
1748 rinv3 = _mm_mul_ps(rinvsq02,rinv02);
1749 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1750 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1751 felec = _mm_mul_ps(qq02,felec);
1755 fscal = _mm_andnot_ps(dummy_mask,fscal);
1757 /* Update vectorial force */
1758 fix0 = _mm_macc_ps(dx02,fscal,fix0);
1759 fiy0 = _mm_macc_ps(dy02,fscal,fiy0);
1760 fiz0 = _mm_macc_ps(dz02,fscal,fiz0);
1762 fjx2 = _mm_macc_ps(dx02,fscal,fjx2);
1763 fjy2 = _mm_macc_ps(dy02,fscal,fjy2);
1764 fjz2 = _mm_macc_ps(dz02,fscal,fjz2);
1766 /**************************
1767 * CALCULATE INTERACTIONS *
1768 **************************/
1770 r10 = _mm_mul_ps(rsq10,rinv10);
1771 r10 = _mm_andnot_ps(dummy_mask,r10);
1773 /* EWALD ELECTROSTATICS */
1775 /* Analytical PME correction */
1776 zeta2 = _mm_mul_ps(beta2,rsq10);
1777 rinv3 = _mm_mul_ps(rinvsq10,rinv10);
1778 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1779 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1780 felec = _mm_mul_ps(qq10,felec);
1784 fscal = _mm_andnot_ps(dummy_mask,fscal);
1786 /* Update vectorial force */
1787 fix1 = _mm_macc_ps(dx10,fscal,fix1);
1788 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
1789 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
1791 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
1792 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
1793 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
1795 /**************************
1796 * CALCULATE INTERACTIONS *
1797 **************************/
1799 r11 = _mm_mul_ps(rsq11,rinv11);
1800 r11 = _mm_andnot_ps(dummy_mask,r11);
1802 /* EWALD ELECTROSTATICS */
1804 /* Analytical PME correction */
1805 zeta2 = _mm_mul_ps(beta2,rsq11);
1806 rinv3 = _mm_mul_ps(rinvsq11,rinv11);
1807 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1808 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1809 felec = _mm_mul_ps(qq11,felec);
1813 fscal = _mm_andnot_ps(dummy_mask,fscal);
1815 /* Update vectorial force */
1816 fix1 = _mm_macc_ps(dx11,fscal,fix1);
1817 fiy1 = _mm_macc_ps(dy11,fscal,fiy1);
1818 fiz1 = _mm_macc_ps(dz11,fscal,fiz1);
1820 fjx1 = _mm_macc_ps(dx11,fscal,fjx1);
1821 fjy1 = _mm_macc_ps(dy11,fscal,fjy1);
1822 fjz1 = _mm_macc_ps(dz11,fscal,fjz1);
1824 /**************************
1825 * CALCULATE INTERACTIONS *
1826 **************************/
1828 r12 = _mm_mul_ps(rsq12,rinv12);
1829 r12 = _mm_andnot_ps(dummy_mask,r12);
1831 /* EWALD ELECTROSTATICS */
1833 /* Analytical PME correction */
1834 zeta2 = _mm_mul_ps(beta2,rsq12);
1835 rinv3 = _mm_mul_ps(rinvsq12,rinv12);
1836 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1837 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1838 felec = _mm_mul_ps(qq12,felec);
1842 fscal = _mm_andnot_ps(dummy_mask,fscal);
1844 /* Update vectorial force */
1845 fix1 = _mm_macc_ps(dx12,fscal,fix1);
1846 fiy1 = _mm_macc_ps(dy12,fscal,fiy1);
1847 fiz1 = _mm_macc_ps(dz12,fscal,fiz1);
1849 fjx2 = _mm_macc_ps(dx12,fscal,fjx2);
1850 fjy2 = _mm_macc_ps(dy12,fscal,fjy2);
1851 fjz2 = _mm_macc_ps(dz12,fscal,fjz2);
1853 /**************************
1854 * CALCULATE INTERACTIONS *
1855 **************************/
1857 r20 = _mm_mul_ps(rsq20,rinv20);
1858 r20 = _mm_andnot_ps(dummy_mask,r20);
1860 /* EWALD ELECTROSTATICS */
1862 /* Analytical PME correction */
1863 zeta2 = _mm_mul_ps(beta2,rsq20);
1864 rinv3 = _mm_mul_ps(rinvsq20,rinv20);
1865 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1866 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1867 felec = _mm_mul_ps(qq20,felec);
1871 fscal = _mm_andnot_ps(dummy_mask,fscal);
1873 /* Update vectorial force */
1874 fix2 = _mm_macc_ps(dx20,fscal,fix2);
1875 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
1876 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
1878 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
1879 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
1880 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
1882 /**************************
1883 * CALCULATE INTERACTIONS *
1884 **************************/
1886 r21 = _mm_mul_ps(rsq21,rinv21);
1887 r21 = _mm_andnot_ps(dummy_mask,r21);
1889 /* EWALD ELECTROSTATICS */
1891 /* Analytical PME correction */
1892 zeta2 = _mm_mul_ps(beta2,rsq21);
1893 rinv3 = _mm_mul_ps(rinvsq21,rinv21);
1894 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1895 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1896 felec = _mm_mul_ps(qq21,felec);
1900 fscal = _mm_andnot_ps(dummy_mask,fscal);
1902 /* Update vectorial force */
1903 fix2 = _mm_macc_ps(dx21,fscal,fix2);
1904 fiy2 = _mm_macc_ps(dy21,fscal,fiy2);
1905 fiz2 = _mm_macc_ps(dz21,fscal,fiz2);
1907 fjx1 = _mm_macc_ps(dx21,fscal,fjx1);
1908 fjy1 = _mm_macc_ps(dy21,fscal,fjy1);
1909 fjz1 = _mm_macc_ps(dz21,fscal,fjz1);
1911 /**************************
1912 * CALCULATE INTERACTIONS *
1913 **************************/
1915 r22 = _mm_mul_ps(rsq22,rinv22);
1916 r22 = _mm_andnot_ps(dummy_mask,r22);
1918 /* EWALD ELECTROSTATICS */
1920 /* Analytical PME correction */
1921 zeta2 = _mm_mul_ps(beta2,rsq22);
1922 rinv3 = _mm_mul_ps(rinvsq22,rinv22);
1923 pmecorrF = gmx_mm_pmecorrF_ps(zeta2);
1924 felec = _mm_macc_ps(pmecorrF,beta3,rinv3);
1925 felec = _mm_mul_ps(qq22,felec);
1929 fscal = _mm_andnot_ps(dummy_mask,fscal);
1931 /* Update vectorial force */
1932 fix2 = _mm_macc_ps(dx22,fscal,fix2);
1933 fiy2 = _mm_macc_ps(dy22,fscal,fiy2);
1934 fiz2 = _mm_macc_ps(dz22,fscal,fiz2);
1936 fjx2 = _mm_macc_ps(dx22,fscal,fjx2);
1937 fjy2 = _mm_macc_ps(dy22,fscal,fjy2);
1938 fjz2 = _mm_macc_ps(dz22,fscal,fjz2);
1940 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1941 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1942 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1943 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1945 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1946 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1948 /* Inner loop uses 268 flops */
1951 /* End of innermost loop */
1953 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1954 f+i_coord_offset,fshift+i_shift_offset);
1956 /* Increment number of inner iterations */
1957 inneriter += j_index_end - j_index_start;
1959 /* Outer loop uses 18 flops */
1962 /* Increment number of outer iterations */
1965 /* Update outer/inner flops */
1967 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*268);