2 * Note: this file was generated by the Gromacs avx_128_fma_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_single.h"
34 #include "kernelutil_x86_avx_128_fma_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_avx_128_fma_single
38 * Electrostatics interaction: CubicSplineTable
39 * VdW interaction: CubicSplineTable
40 * Geometry: Water3-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_avx_128_fma_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
75 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
76 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
77 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
78 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
79 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
80 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
83 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
86 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
87 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
89 __m128i ifour = _mm_set1_epi32(4);
90 __m128 rt,vfeps,twovfeps,vftabscale,Y,F,G,H,Fp,VV,FF;
92 __m128 dummy_mask,cutoff_mask;
93 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
94 __m128 one = _mm_set1_ps(1.0);
95 __m128 two = _mm_set1_ps(2.0);
101 jindex = nlist->jindex;
103 shiftidx = nlist->shift;
105 shiftvec = fr->shift_vec[0];
106 fshift = fr->fshift[0];
107 facel = _mm_set1_ps(fr->epsfac);
108 charge = mdatoms->chargeA;
109 nvdwtype = fr->ntype;
111 vdwtype = mdatoms->typeA;
113 vftab = kernel_data->table_elec_vdw->data;
114 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
116 /* Setup water-specific parameters */
117 inr = nlist->iinr[0];
118 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
119 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
120 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
121 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
123 /* Avoid stupid compiler warnings */
124 jnrA = jnrB = jnrC = jnrD = 0;
133 for(iidx=0;iidx<4*DIM;iidx++)
138 /* Start outer loop over neighborlists */
139 for(iidx=0; iidx<nri; iidx++)
141 /* Load shift vector for this list */
142 i_shift_offset = DIM*shiftidx[iidx];
144 /* Load limits for loop over neighbors */
145 j_index_start = jindex[iidx];
146 j_index_end = jindex[iidx+1];
148 /* Get outer coordinate index */
150 i_coord_offset = DIM*inr;
152 /* Load i particle coords and add shift vector */
153 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
154 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
156 fix0 = _mm_setzero_ps();
157 fiy0 = _mm_setzero_ps();
158 fiz0 = _mm_setzero_ps();
159 fix1 = _mm_setzero_ps();
160 fiy1 = _mm_setzero_ps();
161 fiz1 = _mm_setzero_ps();
162 fix2 = _mm_setzero_ps();
163 fiy2 = _mm_setzero_ps();
164 fiz2 = _mm_setzero_ps();
166 /* Reset potential sums */
167 velecsum = _mm_setzero_ps();
168 vvdwsum = _mm_setzero_ps();
170 /* Start inner kernel loop */
171 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
174 /* Get j neighbor index, and coordinate index */
179 j_coord_offsetA = DIM*jnrA;
180 j_coord_offsetB = DIM*jnrB;
181 j_coord_offsetC = DIM*jnrC;
182 j_coord_offsetD = DIM*jnrD;
184 /* load j atom coordinates */
185 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
186 x+j_coord_offsetC,x+j_coord_offsetD,
189 /* Calculate displacement vector */
190 dx00 = _mm_sub_ps(ix0,jx0);
191 dy00 = _mm_sub_ps(iy0,jy0);
192 dz00 = _mm_sub_ps(iz0,jz0);
193 dx10 = _mm_sub_ps(ix1,jx0);
194 dy10 = _mm_sub_ps(iy1,jy0);
195 dz10 = _mm_sub_ps(iz1,jz0);
196 dx20 = _mm_sub_ps(ix2,jx0);
197 dy20 = _mm_sub_ps(iy2,jy0);
198 dz20 = _mm_sub_ps(iz2,jz0);
200 /* Calculate squared distance and things based on it */
201 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
202 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
203 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
205 rinv00 = gmx_mm_invsqrt_ps(rsq00);
206 rinv10 = gmx_mm_invsqrt_ps(rsq10);
207 rinv20 = gmx_mm_invsqrt_ps(rsq20);
209 /* Load parameters for j particles */
210 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
211 charge+jnrC+0,charge+jnrD+0);
212 vdwjidx0A = 2*vdwtype[jnrA+0];
213 vdwjidx0B = 2*vdwtype[jnrB+0];
214 vdwjidx0C = 2*vdwtype[jnrC+0];
215 vdwjidx0D = 2*vdwtype[jnrD+0];
217 fjx0 = _mm_setzero_ps();
218 fjy0 = _mm_setzero_ps();
219 fjz0 = _mm_setzero_ps();
221 /**************************
222 * CALCULATE INTERACTIONS *
223 **************************/
225 r00 = _mm_mul_ps(rsq00,rinv00);
227 /* Compute parameters for interactions between i and j atoms */
228 qq00 = _mm_mul_ps(iq0,jq0);
229 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
230 vdwparam+vdwioffset0+vdwjidx0B,
231 vdwparam+vdwioffset0+vdwjidx0C,
232 vdwparam+vdwioffset0+vdwjidx0D,
235 /* Calculate table index by multiplying r with table scale and truncate to integer */
236 rt = _mm_mul_ps(r00,vftabscale);
237 vfitab = _mm_cvttps_epi32(rt);
239 vfeps = _mm_frcz_ps(rt);
241 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
243 twovfeps = _mm_add_ps(vfeps,vfeps);
244 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
246 /* CUBIC SPLINE TABLE ELECTROSTATICS */
247 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
248 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
249 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
250 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
251 _MM_TRANSPOSE4_PS(Y,F,G,H);
252 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
253 VV = _mm_macc_ps(vfeps,Fp,Y);
254 velec = _mm_mul_ps(qq00,VV);
255 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
256 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
258 /* CUBIC SPLINE TABLE DISPERSION */
259 vfitab = _mm_add_epi32(vfitab,ifour);
260 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
261 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
262 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
263 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
264 _MM_TRANSPOSE4_PS(Y,F,G,H);
265 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
266 VV = _mm_macc_ps(vfeps,Fp,Y);
267 vvdw6 = _mm_mul_ps(c6_00,VV);
268 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
269 fvdw6 = _mm_mul_ps(c6_00,FF);
271 /* CUBIC SPLINE TABLE REPULSION */
272 vfitab = _mm_add_epi32(vfitab,ifour);
273 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
274 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
275 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
276 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
277 _MM_TRANSPOSE4_PS(Y,F,G,H);
278 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
279 VV = _mm_macc_ps(vfeps,Fp,Y);
280 vvdw12 = _mm_mul_ps(c12_00,VV);
281 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
282 fvdw12 = _mm_mul_ps(c12_00,FF);
283 vvdw = _mm_add_ps(vvdw12,vvdw6);
284 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
286 /* Update potential sum for this i atom from the interaction with this j atom. */
287 velecsum = _mm_add_ps(velecsum,velec);
288 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
290 fscal = _mm_add_ps(felec,fvdw);
292 /* Update vectorial force */
293 fix0 = _mm_macc_ps(dx00,fscal,fix0);
294 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
295 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
297 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
298 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
299 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
301 /**************************
302 * CALCULATE INTERACTIONS *
303 **************************/
305 r10 = _mm_mul_ps(rsq10,rinv10);
307 /* Compute parameters for interactions between i and j atoms */
308 qq10 = _mm_mul_ps(iq1,jq0);
310 /* Calculate table index by multiplying r with table scale and truncate to integer */
311 rt = _mm_mul_ps(r10,vftabscale);
312 vfitab = _mm_cvttps_epi32(rt);
314 vfeps = _mm_frcz_ps(rt);
316 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
318 twovfeps = _mm_add_ps(vfeps,vfeps);
319 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
321 /* CUBIC SPLINE TABLE ELECTROSTATICS */
322 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
323 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
324 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
325 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
326 _MM_TRANSPOSE4_PS(Y,F,G,H);
327 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
328 VV = _mm_macc_ps(vfeps,Fp,Y);
329 velec = _mm_mul_ps(qq10,VV);
330 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
331 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
333 /* Update potential sum for this i atom from the interaction with this j atom. */
334 velecsum = _mm_add_ps(velecsum,velec);
338 /* Update vectorial force */
339 fix1 = _mm_macc_ps(dx10,fscal,fix1);
340 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
341 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
343 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
344 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
345 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
347 /**************************
348 * CALCULATE INTERACTIONS *
349 **************************/
351 r20 = _mm_mul_ps(rsq20,rinv20);
353 /* Compute parameters for interactions between i and j atoms */
354 qq20 = _mm_mul_ps(iq2,jq0);
356 /* Calculate table index by multiplying r with table scale and truncate to integer */
357 rt = _mm_mul_ps(r20,vftabscale);
358 vfitab = _mm_cvttps_epi32(rt);
360 vfeps = _mm_frcz_ps(rt);
362 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
364 twovfeps = _mm_add_ps(vfeps,vfeps);
365 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
367 /* CUBIC SPLINE TABLE ELECTROSTATICS */
368 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
369 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
370 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
371 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
372 _MM_TRANSPOSE4_PS(Y,F,G,H);
373 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
374 VV = _mm_macc_ps(vfeps,Fp,Y);
375 velec = _mm_mul_ps(qq20,VV);
376 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
377 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
379 /* Update potential sum for this i atom from the interaction with this j atom. */
380 velecsum = _mm_add_ps(velecsum,velec);
384 /* Update vectorial force */
385 fix2 = _mm_macc_ps(dx20,fscal,fix2);
386 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
387 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
389 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
390 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
391 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
393 fjptrA = f+j_coord_offsetA;
394 fjptrB = f+j_coord_offsetB;
395 fjptrC = f+j_coord_offsetC;
396 fjptrD = f+j_coord_offsetD;
398 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
400 /* Inner loop uses 168 flops */
406 /* Get j neighbor index, and coordinate index */
407 jnrlistA = jjnr[jidx];
408 jnrlistB = jjnr[jidx+1];
409 jnrlistC = jjnr[jidx+2];
410 jnrlistD = jjnr[jidx+3];
411 /* Sign of each element will be negative for non-real atoms.
412 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
413 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
415 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
416 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
417 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
418 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
419 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
420 j_coord_offsetA = DIM*jnrA;
421 j_coord_offsetB = DIM*jnrB;
422 j_coord_offsetC = DIM*jnrC;
423 j_coord_offsetD = DIM*jnrD;
425 /* load j atom coordinates */
426 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
427 x+j_coord_offsetC,x+j_coord_offsetD,
430 /* Calculate displacement vector */
431 dx00 = _mm_sub_ps(ix0,jx0);
432 dy00 = _mm_sub_ps(iy0,jy0);
433 dz00 = _mm_sub_ps(iz0,jz0);
434 dx10 = _mm_sub_ps(ix1,jx0);
435 dy10 = _mm_sub_ps(iy1,jy0);
436 dz10 = _mm_sub_ps(iz1,jz0);
437 dx20 = _mm_sub_ps(ix2,jx0);
438 dy20 = _mm_sub_ps(iy2,jy0);
439 dz20 = _mm_sub_ps(iz2,jz0);
441 /* Calculate squared distance and things based on it */
442 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
443 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
444 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
446 rinv00 = gmx_mm_invsqrt_ps(rsq00);
447 rinv10 = gmx_mm_invsqrt_ps(rsq10);
448 rinv20 = gmx_mm_invsqrt_ps(rsq20);
450 /* Load parameters for j particles */
451 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
452 charge+jnrC+0,charge+jnrD+0);
453 vdwjidx0A = 2*vdwtype[jnrA+0];
454 vdwjidx0B = 2*vdwtype[jnrB+0];
455 vdwjidx0C = 2*vdwtype[jnrC+0];
456 vdwjidx0D = 2*vdwtype[jnrD+0];
458 fjx0 = _mm_setzero_ps();
459 fjy0 = _mm_setzero_ps();
460 fjz0 = _mm_setzero_ps();
462 /**************************
463 * CALCULATE INTERACTIONS *
464 **************************/
466 r00 = _mm_mul_ps(rsq00,rinv00);
467 r00 = _mm_andnot_ps(dummy_mask,r00);
469 /* Compute parameters for interactions between i and j atoms */
470 qq00 = _mm_mul_ps(iq0,jq0);
471 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
472 vdwparam+vdwioffset0+vdwjidx0B,
473 vdwparam+vdwioffset0+vdwjidx0C,
474 vdwparam+vdwioffset0+vdwjidx0D,
477 /* Calculate table index by multiplying r with table scale and truncate to integer */
478 rt = _mm_mul_ps(r00,vftabscale);
479 vfitab = _mm_cvttps_epi32(rt);
481 vfeps = _mm_frcz_ps(rt);
483 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
485 twovfeps = _mm_add_ps(vfeps,vfeps);
486 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
488 /* CUBIC SPLINE TABLE ELECTROSTATICS */
489 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
490 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
491 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
492 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
493 _MM_TRANSPOSE4_PS(Y,F,G,H);
494 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
495 VV = _mm_macc_ps(vfeps,Fp,Y);
496 velec = _mm_mul_ps(qq00,VV);
497 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
498 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
500 /* CUBIC SPLINE TABLE DISPERSION */
501 vfitab = _mm_add_epi32(vfitab,ifour);
502 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
503 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
504 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
505 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
506 _MM_TRANSPOSE4_PS(Y,F,G,H);
507 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
508 VV = _mm_macc_ps(vfeps,Fp,Y);
509 vvdw6 = _mm_mul_ps(c6_00,VV);
510 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
511 fvdw6 = _mm_mul_ps(c6_00,FF);
513 /* CUBIC SPLINE TABLE REPULSION */
514 vfitab = _mm_add_epi32(vfitab,ifour);
515 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
516 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
517 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
518 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
519 _MM_TRANSPOSE4_PS(Y,F,G,H);
520 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
521 VV = _mm_macc_ps(vfeps,Fp,Y);
522 vvdw12 = _mm_mul_ps(c12_00,VV);
523 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
524 fvdw12 = _mm_mul_ps(c12_00,FF);
525 vvdw = _mm_add_ps(vvdw12,vvdw6);
526 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
528 /* Update potential sum for this i atom from the interaction with this j atom. */
529 velec = _mm_andnot_ps(dummy_mask,velec);
530 velecsum = _mm_add_ps(velecsum,velec);
531 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
532 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
534 fscal = _mm_add_ps(felec,fvdw);
536 fscal = _mm_andnot_ps(dummy_mask,fscal);
538 /* Update vectorial force */
539 fix0 = _mm_macc_ps(dx00,fscal,fix0);
540 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
541 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
543 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
544 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
545 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
547 /**************************
548 * CALCULATE INTERACTIONS *
549 **************************/
551 r10 = _mm_mul_ps(rsq10,rinv10);
552 r10 = _mm_andnot_ps(dummy_mask,r10);
554 /* Compute parameters for interactions between i and j atoms */
555 qq10 = _mm_mul_ps(iq1,jq0);
557 /* Calculate table index by multiplying r with table scale and truncate to integer */
558 rt = _mm_mul_ps(r10,vftabscale);
559 vfitab = _mm_cvttps_epi32(rt);
561 vfeps = _mm_frcz_ps(rt);
563 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
565 twovfeps = _mm_add_ps(vfeps,vfeps);
566 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
568 /* CUBIC SPLINE TABLE ELECTROSTATICS */
569 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
570 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
571 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
572 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
573 _MM_TRANSPOSE4_PS(Y,F,G,H);
574 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
575 VV = _mm_macc_ps(vfeps,Fp,Y);
576 velec = _mm_mul_ps(qq10,VV);
577 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
578 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
580 /* Update potential sum for this i atom from the interaction with this j atom. */
581 velec = _mm_andnot_ps(dummy_mask,velec);
582 velecsum = _mm_add_ps(velecsum,velec);
586 fscal = _mm_andnot_ps(dummy_mask,fscal);
588 /* Update vectorial force */
589 fix1 = _mm_macc_ps(dx10,fscal,fix1);
590 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
591 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
593 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
594 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
595 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
597 /**************************
598 * CALCULATE INTERACTIONS *
599 **************************/
601 r20 = _mm_mul_ps(rsq20,rinv20);
602 r20 = _mm_andnot_ps(dummy_mask,r20);
604 /* Compute parameters for interactions between i and j atoms */
605 qq20 = _mm_mul_ps(iq2,jq0);
607 /* Calculate table index by multiplying r with table scale and truncate to integer */
608 rt = _mm_mul_ps(r20,vftabscale);
609 vfitab = _mm_cvttps_epi32(rt);
611 vfeps = _mm_frcz_ps(rt);
613 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
615 twovfeps = _mm_add_ps(vfeps,vfeps);
616 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
618 /* CUBIC SPLINE TABLE ELECTROSTATICS */
619 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
620 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
621 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
622 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
623 _MM_TRANSPOSE4_PS(Y,F,G,H);
624 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
625 VV = _mm_macc_ps(vfeps,Fp,Y);
626 velec = _mm_mul_ps(qq20,VV);
627 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
628 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
630 /* Update potential sum for this i atom from the interaction with this j atom. */
631 velec = _mm_andnot_ps(dummy_mask,velec);
632 velecsum = _mm_add_ps(velecsum,velec);
636 fscal = _mm_andnot_ps(dummy_mask,fscal);
638 /* Update vectorial force */
639 fix2 = _mm_macc_ps(dx20,fscal,fix2);
640 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
641 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
643 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
644 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
645 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
647 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
648 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
649 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
650 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
652 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
654 /* Inner loop uses 171 flops */
657 /* End of innermost loop */
659 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
660 f+i_coord_offset,fshift+i_shift_offset);
663 /* Update potential energies */
664 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
665 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
667 /* Increment number of inner iterations */
668 inneriter += j_index_end - j_index_start;
670 /* Outer loop uses 20 flops */
673 /* Increment number of outer iterations */
676 /* Update outer/inner flops */
678 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*171);
681 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_avx_128_fma_single
682 * Electrostatics interaction: CubicSplineTable
683 * VdW interaction: CubicSplineTable
684 * Geometry: Water3-Particle
685 * Calculate force/pot: Force
688 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_avx_128_fma_single
689 (t_nblist * gmx_restrict nlist,
690 rvec * gmx_restrict xx,
691 rvec * gmx_restrict ff,
692 t_forcerec * gmx_restrict fr,
693 t_mdatoms * gmx_restrict mdatoms,
694 nb_kernel_data_t * gmx_restrict kernel_data,
695 t_nrnb * gmx_restrict nrnb)
697 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
698 * just 0 for non-waters.
699 * Suffixes A,B,C,D refer to j loop unrolling done with AVX_128, e.g. for the four different
700 * jnr indices corresponding to data put in the four positions in the SIMD register.
702 int i_shift_offset,i_coord_offset,outeriter,inneriter;
703 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
704 int jnrA,jnrB,jnrC,jnrD;
705 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
706 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
707 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
709 real *shiftvec,*fshift,*x,*f;
710 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
712 __m128 fscal,rcutoff,rcutoff2,jidxall;
714 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
716 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
718 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
719 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
720 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
721 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
722 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
723 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
724 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
727 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
730 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
731 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
733 __m128i ifour = _mm_set1_epi32(4);
734 __m128 rt,vfeps,twovfeps,vftabscale,Y,F,G,H,Fp,VV,FF;
736 __m128 dummy_mask,cutoff_mask;
737 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
738 __m128 one = _mm_set1_ps(1.0);
739 __m128 two = _mm_set1_ps(2.0);
745 jindex = nlist->jindex;
747 shiftidx = nlist->shift;
749 shiftvec = fr->shift_vec[0];
750 fshift = fr->fshift[0];
751 facel = _mm_set1_ps(fr->epsfac);
752 charge = mdatoms->chargeA;
753 nvdwtype = fr->ntype;
755 vdwtype = mdatoms->typeA;
757 vftab = kernel_data->table_elec_vdw->data;
758 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
760 /* Setup water-specific parameters */
761 inr = nlist->iinr[0];
762 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
763 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
764 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
765 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
767 /* Avoid stupid compiler warnings */
768 jnrA = jnrB = jnrC = jnrD = 0;
777 for(iidx=0;iidx<4*DIM;iidx++)
782 /* Start outer loop over neighborlists */
783 for(iidx=0; iidx<nri; iidx++)
785 /* Load shift vector for this list */
786 i_shift_offset = DIM*shiftidx[iidx];
788 /* Load limits for loop over neighbors */
789 j_index_start = jindex[iidx];
790 j_index_end = jindex[iidx+1];
792 /* Get outer coordinate index */
794 i_coord_offset = DIM*inr;
796 /* Load i particle coords and add shift vector */
797 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
798 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
800 fix0 = _mm_setzero_ps();
801 fiy0 = _mm_setzero_ps();
802 fiz0 = _mm_setzero_ps();
803 fix1 = _mm_setzero_ps();
804 fiy1 = _mm_setzero_ps();
805 fiz1 = _mm_setzero_ps();
806 fix2 = _mm_setzero_ps();
807 fiy2 = _mm_setzero_ps();
808 fiz2 = _mm_setzero_ps();
810 /* Start inner kernel loop */
811 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
814 /* Get j neighbor index, and coordinate index */
819 j_coord_offsetA = DIM*jnrA;
820 j_coord_offsetB = DIM*jnrB;
821 j_coord_offsetC = DIM*jnrC;
822 j_coord_offsetD = DIM*jnrD;
824 /* load j atom coordinates */
825 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
826 x+j_coord_offsetC,x+j_coord_offsetD,
829 /* Calculate displacement vector */
830 dx00 = _mm_sub_ps(ix0,jx0);
831 dy00 = _mm_sub_ps(iy0,jy0);
832 dz00 = _mm_sub_ps(iz0,jz0);
833 dx10 = _mm_sub_ps(ix1,jx0);
834 dy10 = _mm_sub_ps(iy1,jy0);
835 dz10 = _mm_sub_ps(iz1,jz0);
836 dx20 = _mm_sub_ps(ix2,jx0);
837 dy20 = _mm_sub_ps(iy2,jy0);
838 dz20 = _mm_sub_ps(iz2,jz0);
840 /* Calculate squared distance and things based on it */
841 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
842 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
843 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
845 rinv00 = gmx_mm_invsqrt_ps(rsq00);
846 rinv10 = gmx_mm_invsqrt_ps(rsq10);
847 rinv20 = gmx_mm_invsqrt_ps(rsq20);
849 /* Load parameters for j particles */
850 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
851 charge+jnrC+0,charge+jnrD+0);
852 vdwjidx0A = 2*vdwtype[jnrA+0];
853 vdwjidx0B = 2*vdwtype[jnrB+0];
854 vdwjidx0C = 2*vdwtype[jnrC+0];
855 vdwjidx0D = 2*vdwtype[jnrD+0];
857 fjx0 = _mm_setzero_ps();
858 fjy0 = _mm_setzero_ps();
859 fjz0 = _mm_setzero_ps();
861 /**************************
862 * CALCULATE INTERACTIONS *
863 **************************/
865 r00 = _mm_mul_ps(rsq00,rinv00);
867 /* Compute parameters for interactions between i and j atoms */
868 qq00 = _mm_mul_ps(iq0,jq0);
869 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
870 vdwparam+vdwioffset0+vdwjidx0B,
871 vdwparam+vdwioffset0+vdwjidx0C,
872 vdwparam+vdwioffset0+vdwjidx0D,
875 /* Calculate table index by multiplying r with table scale and truncate to integer */
876 rt = _mm_mul_ps(r00,vftabscale);
877 vfitab = _mm_cvttps_epi32(rt);
879 vfeps = _mm_frcz_ps(rt);
881 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
883 twovfeps = _mm_add_ps(vfeps,vfeps);
884 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
886 /* CUBIC SPLINE TABLE ELECTROSTATICS */
887 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
888 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
889 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
890 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
891 _MM_TRANSPOSE4_PS(Y,F,G,H);
892 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
893 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
894 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
896 /* CUBIC SPLINE TABLE DISPERSION */
897 vfitab = _mm_add_epi32(vfitab,ifour);
898 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
899 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
900 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
901 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
902 _MM_TRANSPOSE4_PS(Y,F,G,H);
903 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
904 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
905 fvdw6 = _mm_mul_ps(c6_00,FF);
907 /* CUBIC SPLINE TABLE REPULSION */
908 vfitab = _mm_add_epi32(vfitab,ifour);
909 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
910 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
911 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
912 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
913 _MM_TRANSPOSE4_PS(Y,F,G,H);
914 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
915 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
916 fvdw12 = _mm_mul_ps(c12_00,FF);
917 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
919 fscal = _mm_add_ps(felec,fvdw);
921 /* Update vectorial force */
922 fix0 = _mm_macc_ps(dx00,fscal,fix0);
923 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
924 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
926 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
927 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
928 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
930 /**************************
931 * CALCULATE INTERACTIONS *
932 **************************/
934 r10 = _mm_mul_ps(rsq10,rinv10);
936 /* Compute parameters for interactions between i and j atoms */
937 qq10 = _mm_mul_ps(iq1,jq0);
939 /* Calculate table index by multiplying r with table scale and truncate to integer */
940 rt = _mm_mul_ps(r10,vftabscale);
941 vfitab = _mm_cvttps_epi32(rt);
943 vfeps = _mm_frcz_ps(rt);
945 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
947 twovfeps = _mm_add_ps(vfeps,vfeps);
948 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
950 /* CUBIC SPLINE TABLE ELECTROSTATICS */
951 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
952 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
953 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
954 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
955 _MM_TRANSPOSE4_PS(Y,F,G,H);
956 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
957 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
958 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
962 /* Update vectorial force */
963 fix1 = _mm_macc_ps(dx10,fscal,fix1);
964 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
965 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
967 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
968 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
969 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
971 /**************************
972 * CALCULATE INTERACTIONS *
973 **************************/
975 r20 = _mm_mul_ps(rsq20,rinv20);
977 /* Compute parameters for interactions between i and j atoms */
978 qq20 = _mm_mul_ps(iq2,jq0);
980 /* Calculate table index by multiplying r with table scale and truncate to integer */
981 rt = _mm_mul_ps(r20,vftabscale);
982 vfitab = _mm_cvttps_epi32(rt);
984 vfeps = _mm_frcz_ps(rt);
986 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
988 twovfeps = _mm_add_ps(vfeps,vfeps);
989 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
991 /* CUBIC SPLINE TABLE ELECTROSTATICS */
992 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
993 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
994 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
995 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
996 _MM_TRANSPOSE4_PS(Y,F,G,H);
997 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
998 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
999 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1003 /* Update vectorial force */
1004 fix2 = _mm_macc_ps(dx20,fscal,fix2);
1005 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
1006 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
1008 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
1009 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
1010 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
1012 fjptrA = f+j_coord_offsetA;
1013 fjptrB = f+j_coord_offsetB;
1014 fjptrC = f+j_coord_offsetC;
1015 fjptrD = f+j_coord_offsetD;
1017 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1019 /* Inner loop uses 148 flops */
1022 if(jidx<j_index_end)
1025 /* Get j neighbor index, and coordinate index */
1026 jnrlistA = jjnr[jidx];
1027 jnrlistB = jjnr[jidx+1];
1028 jnrlistC = jjnr[jidx+2];
1029 jnrlistD = jjnr[jidx+3];
1030 /* Sign of each element will be negative for non-real atoms.
1031 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1032 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1034 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1035 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1036 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1037 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1038 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1039 j_coord_offsetA = DIM*jnrA;
1040 j_coord_offsetB = DIM*jnrB;
1041 j_coord_offsetC = DIM*jnrC;
1042 j_coord_offsetD = DIM*jnrD;
1044 /* load j atom coordinates */
1045 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1046 x+j_coord_offsetC,x+j_coord_offsetD,
1049 /* Calculate displacement vector */
1050 dx00 = _mm_sub_ps(ix0,jx0);
1051 dy00 = _mm_sub_ps(iy0,jy0);
1052 dz00 = _mm_sub_ps(iz0,jz0);
1053 dx10 = _mm_sub_ps(ix1,jx0);
1054 dy10 = _mm_sub_ps(iy1,jy0);
1055 dz10 = _mm_sub_ps(iz1,jz0);
1056 dx20 = _mm_sub_ps(ix2,jx0);
1057 dy20 = _mm_sub_ps(iy2,jy0);
1058 dz20 = _mm_sub_ps(iz2,jz0);
1060 /* Calculate squared distance and things based on it */
1061 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1062 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1063 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1065 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1066 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1067 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1069 /* Load parameters for j particles */
1070 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1071 charge+jnrC+0,charge+jnrD+0);
1072 vdwjidx0A = 2*vdwtype[jnrA+0];
1073 vdwjidx0B = 2*vdwtype[jnrB+0];
1074 vdwjidx0C = 2*vdwtype[jnrC+0];
1075 vdwjidx0D = 2*vdwtype[jnrD+0];
1077 fjx0 = _mm_setzero_ps();
1078 fjy0 = _mm_setzero_ps();
1079 fjz0 = _mm_setzero_ps();
1081 /**************************
1082 * CALCULATE INTERACTIONS *
1083 **************************/
1085 r00 = _mm_mul_ps(rsq00,rinv00);
1086 r00 = _mm_andnot_ps(dummy_mask,r00);
1088 /* Compute parameters for interactions between i and j atoms */
1089 qq00 = _mm_mul_ps(iq0,jq0);
1090 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1091 vdwparam+vdwioffset0+vdwjidx0B,
1092 vdwparam+vdwioffset0+vdwjidx0C,
1093 vdwparam+vdwioffset0+vdwjidx0D,
1096 /* Calculate table index by multiplying r with table scale and truncate to integer */
1097 rt = _mm_mul_ps(r00,vftabscale);
1098 vfitab = _mm_cvttps_epi32(rt);
1100 vfeps = _mm_frcz_ps(rt);
1102 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1104 twovfeps = _mm_add_ps(vfeps,vfeps);
1105 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1107 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1108 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
1109 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
1110 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
1111 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
1112 _MM_TRANSPOSE4_PS(Y,F,G,H);
1113 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
1114 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
1115 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
1117 /* CUBIC SPLINE TABLE DISPERSION */
1118 vfitab = _mm_add_epi32(vfitab,ifour);
1119 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
1120 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
1121 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
1122 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
1123 _MM_TRANSPOSE4_PS(Y,F,G,H);
1124 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
1125 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
1126 fvdw6 = _mm_mul_ps(c6_00,FF);
1128 /* CUBIC SPLINE TABLE REPULSION */
1129 vfitab = _mm_add_epi32(vfitab,ifour);
1130 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
1131 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
1132 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
1133 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
1134 _MM_TRANSPOSE4_PS(Y,F,G,H);
1135 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
1136 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
1137 fvdw12 = _mm_mul_ps(c12_00,FF);
1138 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1140 fscal = _mm_add_ps(felec,fvdw);
1142 fscal = _mm_andnot_ps(dummy_mask,fscal);
1144 /* Update vectorial force */
1145 fix0 = _mm_macc_ps(dx00,fscal,fix0);
1146 fiy0 = _mm_macc_ps(dy00,fscal,fiy0);
1147 fiz0 = _mm_macc_ps(dz00,fscal,fiz0);
1149 fjx0 = _mm_macc_ps(dx00,fscal,fjx0);
1150 fjy0 = _mm_macc_ps(dy00,fscal,fjy0);
1151 fjz0 = _mm_macc_ps(dz00,fscal,fjz0);
1153 /**************************
1154 * CALCULATE INTERACTIONS *
1155 **************************/
1157 r10 = _mm_mul_ps(rsq10,rinv10);
1158 r10 = _mm_andnot_ps(dummy_mask,r10);
1160 /* Compute parameters for interactions between i and j atoms */
1161 qq10 = _mm_mul_ps(iq1,jq0);
1163 /* Calculate table index by multiplying r with table scale and truncate to integer */
1164 rt = _mm_mul_ps(r10,vftabscale);
1165 vfitab = _mm_cvttps_epi32(rt);
1167 vfeps = _mm_frcz_ps(rt);
1169 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1171 twovfeps = _mm_add_ps(vfeps,vfeps);
1172 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1174 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1175 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
1176 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
1177 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
1178 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
1179 _MM_TRANSPOSE4_PS(Y,F,G,H);
1180 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
1181 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
1182 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1186 fscal = _mm_andnot_ps(dummy_mask,fscal);
1188 /* Update vectorial force */
1189 fix1 = _mm_macc_ps(dx10,fscal,fix1);
1190 fiy1 = _mm_macc_ps(dy10,fscal,fiy1);
1191 fiz1 = _mm_macc_ps(dz10,fscal,fiz1);
1193 fjx0 = _mm_macc_ps(dx10,fscal,fjx0);
1194 fjy0 = _mm_macc_ps(dy10,fscal,fjy0);
1195 fjz0 = _mm_macc_ps(dz10,fscal,fjz0);
1197 /**************************
1198 * CALCULATE INTERACTIONS *
1199 **************************/
1201 r20 = _mm_mul_ps(rsq20,rinv20);
1202 r20 = _mm_andnot_ps(dummy_mask,r20);
1204 /* Compute parameters for interactions between i and j atoms */
1205 qq20 = _mm_mul_ps(iq2,jq0);
1207 /* Calculate table index by multiplying r with table scale and truncate to integer */
1208 rt = _mm_mul_ps(r20,vftabscale);
1209 vfitab = _mm_cvttps_epi32(rt);
1211 vfeps = _mm_frcz_ps(rt);
1213 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1215 twovfeps = _mm_add_ps(vfeps,vfeps);
1216 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1218 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1219 Y = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,0) );
1220 F = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,1) );
1221 G = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,2) );
1222 H = _mm_load_ps( vftab + _mm_extract_epi32(vfitab,3) );
1223 _MM_TRANSPOSE4_PS(Y,F,G,H);
1224 Fp = _mm_macc_ps(vfeps,_mm_macc_ps(H,vfeps,G),F);
1225 FF = _mm_macc_ps(vfeps,_mm_macc_ps(twovfeps,H,G),Fp);
1226 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1230 fscal = _mm_andnot_ps(dummy_mask,fscal);
1232 /* Update vectorial force */
1233 fix2 = _mm_macc_ps(dx20,fscal,fix2);
1234 fiy2 = _mm_macc_ps(dy20,fscal,fiy2);
1235 fiz2 = _mm_macc_ps(dz20,fscal,fiz2);
1237 fjx0 = _mm_macc_ps(dx20,fscal,fjx0);
1238 fjy0 = _mm_macc_ps(dy20,fscal,fjy0);
1239 fjz0 = _mm_macc_ps(dz20,fscal,fjz0);
1241 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1242 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1243 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1244 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1246 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1248 /* Inner loop uses 151 flops */
1251 /* End of innermost loop */
1253 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1254 f+i_coord_offset,fshift+i_shift_offset);
1256 /* Increment number of inner iterations */
1257 inneriter += j_index_end - j_index_start;
1259 /* Outer loop uses 18 flops */
1262 /* Increment number of outer iterations */
1265 /* Update outer/inner flops */
1267 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*151);