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36 * Note: this file was generated by the GROMACS avx_128_fma_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_avx_128_fma_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomP1P1_VF_avx_128_fma_double
51 * Electrostatics interaction: ReactionField
52 * VdW interaction: LennardJones
53 * Geometry: Particle-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecRF_VdwLJ_GeomP1P1_VF_avx_128_fma_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
81 int vdwjidx0A,vdwjidx0B;
82 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
83 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
84 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
87 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
90 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
91 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
92 __m128d dummy_mask,cutoff_mask;
93 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
94 __m128d one = _mm_set1_pd(1.0);
95 __m128d two = _mm_set1_pd(2.0);
101 jindex = nlist->jindex;
103 shiftidx = nlist->shift;
105 shiftvec = fr->shift_vec[0];
106 fshift = fr->fshift[0];
107 facel = _mm_set1_pd(fr->ic->epsfac);
108 charge = mdatoms->chargeA;
109 krf = _mm_set1_pd(fr->ic->k_rf);
110 krf2 = _mm_set1_pd(fr->ic->k_rf*2.0);
111 crf = _mm_set1_pd(fr->ic->c_rf);
112 nvdwtype = fr->ntype;
114 vdwtype = mdatoms->typeA;
116 /* Avoid stupid compiler warnings */
124 /* Start outer loop over neighborlists */
125 for(iidx=0; iidx<nri; iidx++)
127 /* Load shift vector for this list */
128 i_shift_offset = DIM*shiftidx[iidx];
130 /* Load limits for loop over neighbors */
131 j_index_start = jindex[iidx];
132 j_index_end = jindex[iidx+1];
134 /* Get outer coordinate index */
136 i_coord_offset = DIM*inr;
138 /* Load i particle coords and add shift vector */
139 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
141 fix0 = _mm_setzero_pd();
142 fiy0 = _mm_setzero_pd();
143 fiz0 = _mm_setzero_pd();
145 /* Load parameters for i particles */
146 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
147 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
149 /* Reset potential sums */
150 velecsum = _mm_setzero_pd();
151 vvdwsum = _mm_setzero_pd();
153 /* Start inner kernel loop */
154 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
157 /* Get j neighbor index, and coordinate index */
160 j_coord_offsetA = DIM*jnrA;
161 j_coord_offsetB = DIM*jnrB;
163 /* load j atom coordinates */
164 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
167 /* Calculate displacement vector */
168 dx00 = _mm_sub_pd(ix0,jx0);
169 dy00 = _mm_sub_pd(iy0,jy0);
170 dz00 = _mm_sub_pd(iz0,jz0);
172 /* Calculate squared distance and things based on it */
173 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
175 rinv00 = avx128fma_invsqrt_d(rsq00);
177 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
179 /* Load parameters for j particles */
180 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
181 vdwjidx0A = 2*vdwtype[jnrA+0];
182 vdwjidx0B = 2*vdwtype[jnrB+0];
184 /**************************
185 * CALCULATE INTERACTIONS *
186 **************************/
188 /* Compute parameters for interactions between i and j atoms */
189 qq00 = _mm_mul_pd(iq0,jq0);
190 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
191 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
193 /* REACTION-FIELD ELECTROSTATICS */
194 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_macc_pd(krf,rsq00,rinv00),crf));
195 felec = _mm_mul_pd(qq00,_mm_msub_pd(rinv00,rinvsq00,krf2));
197 /* LENNARD-JONES DISPERSION/REPULSION */
199 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
200 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
201 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
202 vvdw = _mm_msub_pd( vvdw12,one_twelfth, _mm_mul_pd(vvdw6,one_sixth) );
203 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
205 /* Update potential sum for this i atom from the interaction with this j atom. */
206 velecsum = _mm_add_pd(velecsum,velec);
207 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
209 fscal = _mm_add_pd(felec,fvdw);
211 /* Update vectorial force */
212 fix0 = _mm_macc_pd(dx00,fscal,fix0);
213 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
214 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
216 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
217 _mm_mul_pd(dx00,fscal),
218 _mm_mul_pd(dy00,fscal),
219 _mm_mul_pd(dz00,fscal));
221 /* Inner loop uses 47 flops */
228 j_coord_offsetA = DIM*jnrA;
230 /* load j atom coordinates */
231 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
234 /* Calculate displacement vector */
235 dx00 = _mm_sub_pd(ix0,jx0);
236 dy00 = _mm_sub_pd(iy0,jy0);
237 dz00 = _mm_sub_pd(iz0,jz0);
239 /* Calculate squared distance and things based on it */
240 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
242 rinv00 = avx128fma_invsqrt_d(rsq00);
244 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
246 /* Load parameters for j particles */
247 jq0 = _mm_load_sd(charge+jnrA+0);
248 vdwjidx0A = 2*vdwtype[jnrA+0];
250 /**************************
251 * CALCULATE INTERACTIONS *
252 **************************/
254 /* Compute parameters for interactions between i and j atoms */
255 qq00 = _mm_mul_pd(iq0,jq0);
256 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
258 /* REACTION-FIELD ELECTROSTATICS */
259 velec = _mm_mul_pd(qq00,_mm_sub_pd(_mm_macc_pd(krf,rsq00,rinv00),crf));
260 felec = _mm_mul_pd(qq00,_mm_msub_pd(rinv00,rinvsq00,krf2));
262 /* LENNARD-JONES DISPERSION/REPULSION */
264 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
265 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
266 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
267 vvdw = _mm_msub_pd( vvdw12,one_twelfth, _mm_mul_pd(vvdw6,one_sixth) );
268 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
270 /* Update potential sum for this i atom from the interaction with this j atom. */
271 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
272 velecsum = _mm_add_pd(velecsum,velec);
273 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
274 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
276 fscal = _mm_add_pd(felec,fvdw);
278 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
280 /* Update vectorial force */
281 fix0 = _mm_macc_pd(dx00,fscal,fix0);
282 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
283 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
285 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
286 _mm_mul_pd(dx00,fscal),
287 _mm_mul_pd(dy00,fscal),
288 _mm_mul_pd(dz00,fscal));
290 /* Inner loop uses 47 flops */
293 /* End of innermost loop */
295 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
296 f+i_coord_offset,fshift+i_shift_offset);
299 /* Update potential energies */
300 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
301 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
303 /* Increment number of inner iterations */
304 inneriter += j_index_end - j_index_start;
306 /* Outer loop uses 9 flops */
309 /* Increment number of outer iterations */
312 /* Update outer/inner flops */
314 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*9 + inneriter*47);
317 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwLJ_GeomP1P1_F_avx_128_fma_double
318 * Electrostatics interaction: ReactionField
319 * VdW interaction: LennardJones
320 * Geometry: Particle-Particle
321 * Calculate force/pot: Force
324 nb_kernel_ElecRF_VdwLJ_GeomP1P1_F_avx_128_fma_double
325 (t_nblist * gmx_restrict nlist,
326 rvec * gmx_restrict xx,
327 rvec * gmx_restrict ff,
328 struct t_forcerec * gmx_restrict fr,
329 t_mdatoms * gmx_restrict mdatoms,
330 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
331 t_nrnb * gmx_restrict nrnb)
333 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
334 * just 0 for non-waters.
335 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
336 * jnr indices corresponding to data put in the four positions in the SIMD register.
338 int i_shift_offset,i_coord_offset,outeriter,inneriter;
339 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
341 int j_coord_offsetA,j_coord_offsetB;
342 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
344 real *shiftvec,*fshift,*x,*f;
345 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
347 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
348 int vdwjidx0A,vdwjidx0B;
349 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
350 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
351 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
354 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
357 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
358 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
359 __m128d dummy_mask,cutoff_mask;
360 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
361 __m128d one = _mm_set1_pd(1.0);
362 __m128d two = _mm_set1_pd(2.0);
368 jindex = nlist->jindex;
370 shiftidx = nlist->shift;
372 shiftvec = fr->shift_vec[0];
373 fshift = fr->fshift[0];
374 facel = _mm_set1_pd(fr->ic->epsfac);
375 charge = mdatoms->chargeA;
376 krf = _mm_set1_pd(fr->ic->k_rf);
377 krf2 = _mm_set1_pd(fr->ic->k_rf*2.0);
378 crf = _mm_set1_pd(fr->ic->c_rf);
379 nvdwtype = fr->ntype;
381 vdwtype = mdatoms->typeA;
383 /* Avoid stupid compiler warnings */
391 /* Start outer loop over neighborlists */
392 for(iidx=0; iidx<nri; iidx++)
394 /* Load shift vector for this list */
395 i_shift_offset = DIM*shiftidx[iidx];
397 /* Load limits for loop over neighbors */
398 j_index_start = jindex[iidx];
399 j_index_end = jindex[iidx+1];
401 /* Get outer coordinate index */
403 i_coord_offset = DIM*inr;
405 /* Load i particle coords and add shift vector */
406 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
408 fix0 = _mm_setzero_pd();
409 fiy0 = _mm_setzero_pd();
410 fiz0 = _mm_setzero_pd();
412 /* Load parameters for i particles */
413 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
414 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
416 /* Start inner kernel loop */
417 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
420 /* Get j neighbor index, and coordinate index */
423 j_coord_offsetA = DIM*jnrA;
424 j_coord_offsetB = DIM*jnrB;
426 /* load j atom coordinates */
427 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
430 /* Calculate displacement vector */
431 dx00 = _mm_sub_pd(ix0,jx0);
432 dy00 = _mm_sub_pd(iy0,jy0);
433 dz00 = _mm_sub_pd(iz0,jz0);
435 /* Calculate squared distance and things based on it */
436 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
438 rinv00 = avx128fma_invsqrt_d(rsq00);
440 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
442 /* Load parameters for j particles */
443 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
444 vdwjidx0A = 2*vdwtype[jnrA+0];
445 vdwjidx0B = 2*vdwtype[jnrB+0];
447 /**************************
448 * CALCULATE INTERACTIONS *
449 **************************/
451 /* Compute parameters for interactions between i and j atoms */
452 qq00 = _mm_mul_pd(iq0,jq0);
453 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
454 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
456 /* REACTION-FIELD ELECTROSTATICS */
457 felec = _mm_mul_pd(qq00,_mm_msub_pd(rinv00,rinvsq00,krf2));
459 /* LENNARD-JONES DISPERSION/REPULSION */
461 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
462 fvdw = _mm_mul_pd(_mm_msub_pd(c12_00,rinvsix,c6_00),_mm_mul_pd(rinvsix,rinvsq00));
464 fscal = _mm_add_pd(felec,fvdw);
466 /* Update vectorial force */
467 fix0 = _mm_macc_pd(dx00,fscal,fix0);
468 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
469 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
471 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
472 _mm_mul_pd(dx00,fscal),
473 _mm_mul_pd(dy00,fscal),
474 _mm_mul_pd(dz00,fscal));
476 /* Inner loop uses 37 flops */
483 j_coord_offsetA = DIM*jnrA;
485 /* load j atom coordinates */
486 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
489 /* Calculate displacement vector */
490 dx00 = _mm_sub_pd(ix0,jx0);
491 dy00 = _mm_sub_pd(iy0,jy0);
492 dz00 = _mm_sub_pd(iz0,jz0);
494 /* Calculate squared distance and things based on it */
495 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
497 rinv00 = avx128fma_invsqrt_d(rsq00);
499 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
501 /* Load parameters for j particles */
502 jq0 = _mm_load_sd(charge+jnrA+0);
503 vdwjidx0A = 2*vdwtype[jnrA+0];
505 /**************************
506 * CALCULATE INTERACTIONS *
507 **************************/
509 /* Compute parameters for interactions between i and j atoms */
510 qq00 = _mm_mul_pd(iq0,jq0);
511 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
513 /* REACTION-FIELD ELECTROSTATICS */
514 felec = _mm_mul_pd(qq00,_mm_msub_pd(rinv00,rinvsq00,krf2));
516 /* LENNARD-JONES DISPERSION/REPULSION */
518 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
519 fvdw = _mm_mul_pd(_mm_msub_pd(c12_00,rinvsix,c6_00),_mm_mul_pd(rinvsix,rinvsq00));
521 fscal = _mm_add_pd(felec,fvdw);
523 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
525 /* Update vectorial force */
526 fix0 = _mm_macc_pd(dx00,fscal,fix0);
527 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
528 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
530 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
531 _mm_mul_pd(dx00,fscal),
532 _mm_mul_pd(dy00,fscal),
533 _mm_mul_pd(dz00,fscal));
535 /* Inner loop uses 37 flops */
538 /* End of innermost loop */
540 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
541 f+i_coord_offset,fshift+i_shift_offset);
543 /* Increment number of inner iterations */
544 inneriter += j_index_end - j_index_start;
546 /* Outer loop uses 7 flops */
549 /* Increment number of outer iterations */
552 /* Update outer/inner flops */
554 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*7 + inneriter*37);