2 * Note: this file was generated by the Gromacs avx_128_fma_double kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_avx_128_fma_double.h"
34 #include "kernelutil_x86_avx_128_fma_double.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwCSTab_GeomP1P1_VF_avx_128_fma_double
38 * Electrostatics interaction: GeneralizedBorn
39 * VdW interaction: CubicSplineTable
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecGB_VdwCSTab_GeomP1P1_VF_avx_128_fma_double
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
61 int j_coord_offsetA,j_coord_offsetB;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
64 real *shiftvec,*fshift,*x,*f;
65 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68 int vdwjidx0A,vdwjidx0B;
69 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
70 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
71 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
74 __m128d vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,dvdaj,gbeps,twogbeps,dvdatmp;
75 __m128d minushalf = _mm_set1_pd(-0.5);
76 real *invsqrta,*dvda,*gbtab;
78 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
81 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
82 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
84 __m128i ifour = _mm_set1_epi32(4);
85 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
87 __m128d dummy_mask,cutoff_mask;
88 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
89 __m128d one = _mm_set1_pd(1.0);
90 __m128d two = _mm_set1_pd(2.0);
96 jindex = nlist->jindex;
98 shiftidx = nlist->shift;
100 shiftvec = fr->shift_vec[0];
101 fshift = fr->fshift[0];
102 facel = _mm_set1_pd(fr->epsfac);
103 charge = mdatoms->chargeA;
104 nvdwtype = fr->ntype;
106 vdwtype = mdatoms->typeA;
108 vftab = kernel_data->table_vdw->data;
109 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
111 invsqrta = fr->invsqrta;
113 gbtabscale = _mm_set1_pd(fr->gbtab.scale);
114 gbtab = fr->gbtab.data;
115 gbinvepsdiff = _mm_set1_pd((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
117 /* Avoid stupid compiler warnings */
125 /* Start outer loop over neighborlists */
126 for(iidx=0; iidx<nri; iidx++)
128 /* Load shift vector for this list */
129 i_shift_offset = DIM*shiftidx[iidx];
131 /* Load limits for loop over neighbors */
132 j_index_start = jindex[iidx];
133 j_index_end = jindex[iidx+1];
135 /* Get outer coordinate index */
137 i_coord_offset = DIM*inr;
139 /* Load i particle coords and add shift vector */
140 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
142 fix0 = _mm_setzero_pd();
143 fiy0 = _mm_setzero_pd();
144 fiz0 = _mm_setzero_pd();
146 /* Load parameters for i particles */
147 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
148 isai0 = _mm_load1_pd(invsqrta+inr+0);
149 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
151 /* Reset potential sums */
152 velecsum = _mm_setzero_pd();
153 vgbsum = _mm_setzero_pd();
154 vvdwsum = _mm_setzero_pd();
155 dvdasum = _mm_setzero_pd();
157 /* Start inner kernel loop */
158 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
161 /* Get j neighbor index, and coordinate index */
164 j_coord_offsetA = DIM*jnrA;
165 j_coord_offsetB = DIM*jnrB;
167 /* load j atom coordinates */
168 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
171 /* Calculate displacement vector */
172 dx00 = _mm_sub_pd(ix0,jx0);
173 dy00 = _mm_sub_pd(iy0,jy0);
174 dz00 = _mm_sub_pd(iz0,jz0);
176 /* Calculate squared distance and things based on it */
177 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
179 rinv00 = gmx_mm_invsqrt_pd(rsq00);
181 /* Load parameters for j particles */
182 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
183 isaj0 = gmx_mm_load_2real_swizzle_pd(invsqrta+jnrA+0,invsqrta+jnrB+0);
184 vdwjidx0A = 2*vdwtype[jnrA+0];
185 vdwjidx0B = 2*vdwtype[jnrB+0];
187 /**************************
188 * CALCULATE INTERACTIONS *
189 **************************/
191 r00 = _mm_mul_pd(rsq00,rinv00);
193 /* Compute parameters for interactions between i and j atoms */
194 qq00 = _mm_mul_pd(iq0,jq0);
195 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
196 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
198 /* Calculate table index by multiplying r with table scale and truncate to integer */
199 rt = _mm_mul_pd(r00,vftabscale);
200 vfitab = _mm_cvttpd_epi32(rt);
202 vfeps = _mm_frcz_pd(rt);
204 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
206 twovfeps = _mm_add_pd(vfeps,vfeps);
207 vfitab = _mm_slli_epi32(vfitab,3);
209 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
210 isaprod = _mm_mul_pd(isai0,isaj0);
211 gbqqfactor = _mm_xor_pd(signbit,_mm_mul_pd(qq00,_mm_mul_pd(isaprod,gbinvepsdiff)));
212 gbscale = _mm_mul_pd(isaprod,gbtabscale);
214 /* Calculate generalized born table index - this is a separate table from the normal one,
215 * but we use the same procedure by multiplying r with scale and truncating to integer.
217 rt = _mm_mul_pd(r00,gbscale);
218 gbitab = _mm_cvttpd_epi32(rt);
220 gbeps = _mm_frcz_pd(rt);
222 gbeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
224 gbitab = _mm_slli_epi32(gbitab,2);
226 Y = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) );
227 F = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,1) );
228 GMX_MM_TRANSPOSE2_PD(Y,F);
229 G = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) +2);
230 H = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,1) +2);
231 GMX_MM_TRANSPOSE2_PD(G,H);
232 Fp = _mm_macc_pd(gbeps,_mm_macc_pd(gbeps,H,G),F);
233 VV = _mm_macc_pd(gbeps,Fp,Y);
234 vgb = _mm_mul_pd(gbqqfactor,VV);
236 twogbeps = _mm_add_pd(gbeps,gbeps);
237 FF = _mm_macc_pd(_mm_macc_pd(twogbeps,H,G),gbeps,Fp);
238 fgb = _mm_mul_pd(gbqqfactor,_mm_mul_pd(FF,gbscale));
239 dvdatmp = _mm_mul_pd(minushalf,_mm_macc_pd(fgb,r00,vgb));
240 dvdasum = _mm_add_pd(dvdasum,dvdatmp);
241 gmx_mm_increment_2real_swizzle_pd(dvda+jnrA,dvda+jnrB,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj0,isaj0)));
242 velec = _mm_mul_pd(qq00,rinv00);
243 felec = _mm_mul_pd(_mm_msub_pd(velec,rinv00,fgb),rinv00);
245 /* CUBIC SPLINE TABLE DISPERSION */
246 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
247 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
248 GMX_MM_TRANSPOSE2_PD(Y,F);
249 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
250 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
251 GMX_MM_TRANSPOSE2_PD(G,H);
252 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
253 VV = _mm_macc_pd(vfeps,Fp,Y);
254 vvdw6 = _mm_mul_pd(c6_00,VV);
255 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
256 fvdw6 = _mm_mul_pd(c6_00,FF);
258 /* CUBIC SPLINE TABLE REPULSION */
259 vfitab = _mm_add_epi32(vfitab,ifour);
260 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
261 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
262 GMX_MM_TRANSPOSE2_PD(Y,F);
263 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
264 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
265 GMX_MM_TRANSPOSE2_PD(G,H);
266 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
267 VV = _mm_macc_pd(vfeps,Fp,Y);
268 vvdw12 = _mm_mul_pd(c12_00,VV);
269 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
270 fvdw12 = _mm_mul_pd(c12_00,FF);
271 vvdw = _mm_add_pd(vvdw12,vvdw6);
272 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
274 /* Update potential sum for this i atom from the interaction with this j atom. */
275 velecsum = _mm_add_pd(velecsum,velec);
276 vgbsum = _mm_add_pd(vgbsum,vgb);
277 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
279 fscal = _mm_add_pd(felec,fvdw);
281 /* Update vectorial force */
282 fix0 = _mm_macc_pd(dx00,fscal,fix0);
283 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
284 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
286 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
287 _mm_mul_pd(dx00,fscal),
288 _mm_mul_pd(dy00,fscal),
289 _mm_mul_pd(dz00,fscal));
291 /* Inner loop uses 95 flops */
298 j_coord_offsetA = DIM*jnrA;
300 /* load j atom coordinates */
301 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
304 /* Calculate displacement vector */
305 dx00 = _mm_sub_pd(ix0,jx0);
306 dy00 = _mm_sub_pd(iy0,jy0);
307 dz00 = _mm_sub_pd(iz0,jz0);
309 /* Calculate squared distance and things based on it */
310 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
312 rinv00 = gmx_mm_invsqrt_pd(rsq00);
314 /* Load parameters for j particles */
315 jq0 = _mm_load_sd(charge+jnrA+0);
316 isaj0 = _mm_load_sd(invsqrta+jnrA+0);
317 vdwjidx0A = 2*vdwtype[jnrA+0];
319 /**************************
320 * CALCULATE INTERACTIONS *
321 **************************/
323 r00 = _mm_mul_pd(rsq00,rinv00);
325 /* Compute parameters for interactions between i and j atoms */
326 qq00 = _mm_mul_pd(iq0,jq0);
327 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
329 /* Calculate table index by multiplying r with table scale and truncate to integer */
330 rt = _mm_mul_pd(r00,vftabscale);
331 vfitab = _mm_cvttpd_epi32(rt);
333 vfeps = _mm_frcz_pd(rt);
335 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
337 twovfeps = _mm_add_pd(vfeps,vfeps);
338 vfitab = _mm_slli_epi32(vfitab,3);
340 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
341 isaprod = _mm_mul_pd(isai0,isaj0);
342 gbqqfactor = _mm_xor_pd(signbit,_mm_mul_pd(qq00,_mm_mul_pd(isaprod,gbinvepsdiff)));
343 gbscale = _mm_mul_pd(isaprod,gbtabscale);
345 /* Calculate generalized born table index - this is a separate table from the normal one,
346 * but we use the same procedure by multiplying r with scale and truncating to integer.
348 rt = _mm_mul_pd(r00,gbscale);
349 gbitab = _mm_cvttpd_epi32(rt);
351 gbeps = _mm_frcz_pd(rt);
353 gbeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
355 gbitab = _mm_slli_epi32(gbitab,2);
357 Y = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) );
358 F = _mm_setzero_pd();
359 GMX_MM_TRANSPOSE2_PD(Y,F);
360 G = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) +2);
361 H = _mm_setzero_pd();
362 GMX_MM_TRANSPOSE2_PD(G,H);
363 Fp = _mm_macc_pd(gbeps,_mm_macc_pd(gbeps,H,G),F);
364 VV = _mm_macc_pd(gbeps,Fp,Y);
365 vgb = _mm_mul_pd(gbqqfactor,VV);
367 twogbeps = _mm_add_pd(gbeps,gbeps);
368 FF = _mm_macc_pd(_mm_macc_pd(twogbeps,H,G),gbeps,Fp);
369 fgb = _mm_mul_pd(gbqqfactor,_mm_mul_pd(FF,gbscale));
370 dvdatmp = _mm_mul_pd(minushalf,_mm_macc_pd(fgb,r00,vgb));
371 dvdatmp = _mm_unpacklo_pd(dvdatmp,_mm_setzero_pd());
372 dvdasum = _mm_add_pd(dvdasum,dvdatmp);
373 gmx_mm_increment_1real_pd(dvda+jnrA,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj0,isaj0)));
374 velec = _mm_mul_pd(qq00,rinv00);
375 felec = _mm_mul_pd(_mm_msub_pd(velec,rinv00,fgb),rinv00);
377 /* CUBIC SPLINE TABLE DISPERSION */
378 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
379 F = _mm_setzero_pd();
380 GMX_MM_TRANSPOSE2_PD(Y,F);
381 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
382 H = _mm_setzero_pd();
383 GMX_MM_TRANSPOSE2_PD(G,H);
384 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
385 VV = _mm_macc_pd(vfeps,Fp,Y);
386 vvdw6 = _mm_mul_pd(c6_00,VV);
387 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
388 fvdw6 = _mm_mul_pd(c6_00,FF);
390 /* CUBIC SPLINE TABLE REPULSION */
391 vfitab = _mm_add_epi32(vfitab,ifour);
392 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
393 F = _mm_setzero_pd();
394 GMX_MM_TRANSPOSE2_PD(Y,F);
395 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
396 H = _mm_setzero_pd();
397 GMX_MM_TRANSPOSE2_PD(G,H);
398 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
399 VV = _mm_macc_pd(vfeps,Fp,Y);
400 vvdw12 = _mm_mul_pd(c12_00,VV);
401 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
402 fvdw12 = _mm_mul_pd(c12_00,FF);
403 vvdw = _mm_add_pd(vvdw12,vvdw6);
404 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
406 /* Update potential sum for this i atom from the interaction with this j atom. */
407 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
408 velecsum = _mm_add_pd(velecsum,velec);
409 vgb = _mm_unpacklo_pd(vgb,_mm_setzero_pd());
410 vgbsum = _mm_add_pd(vgbsum,vgb);
411 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
412 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
414 fscal = _mm_add_pd(felec,fvdw);
416 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
418 /* Update vectorial force */
419 fix0 = _mm_macc_pd(dx00,fscal,fix0);
420 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
421 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
423 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
424 _mm_mul_pd(dx00,fscal),
425 _mm_mul_pd(dy00,fscal),
426 _mm_mul_pd(dz00,fscal));
428 /* Inner loop uses 95 flops */
431 /* End of innermost loop */
433 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
434 f+i_coord_offset,fshift+i_shift_offset);
437 /* Update potential energies */
438 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
439 gmx_mm_update_1pot_pd(vgbsum,kernel_data->energygrp_polarization+ggid);
440 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
441 dvdasum = _mm_mul_pd(dvdasum, _mm_mul_pd(isai0,isai0));
442 gmx_mm_update_1pot_pd(dvdasum,dvda+inr);
444 /* Increment number of inner iterations */
445 inneriter += j_index_end - j_index_start;
447 /* Outer loop uses 10 flops */
450 /* Increment number of outer iterations */
453 /* Update outer/inner flops */
455 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*10 + inneriter*95);
458 * Gromacs nonbonded kernel: nb_kernel_ElecGB_VdwCSTab_GeomP1P1_F_avx_128_fma_double
459 * Electrostatics interaction: GeneralizedBorn
460 * VdW interaction: CubicSplineTable
461 * Geometry: Particle-Particle
462 * Calculate force/pot: Force
465 nb_kernel_ElecGB_VdwCSTab_GeomP1P1_F_avx_128_fma_double
466 (t_nblist * gmx_restrict nlist,
467 rvec * gmx_restrict xx,
468 rvec * gmx_restrict ff,
469 t_forcerec * gmx_restrict fr,
470 t_mdatoms * gmx_restrict mdatoms,
471 nb_kernel_data_t * gmx_restrict kernel_data,
472 t_nrnb * gmx_restrict nrnb)
474 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
475 * just 0 for non-waters.
476 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
477 * jnr indices corresponding to data put in the four positions in the SIMD register.
479 int i_shift_offset,i_coord_offset,outeriter,inneriter;
480 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
482 int j_coord_offsetA,j_coord_offsetB;
483 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
485 real *shiftvec,*fshift,*x,*f;
486 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
488 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
489 int vdwjidx0A,vdwjidx0B;
490 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
491 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
492 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
495 __m128d vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,dvdaj,gbeps,twogbeps,dvdatmp;
496 __m128d minushalf = _mm_set1_pd(-0.5);
497 real *invsqrta,*dvda,*gbtab;
499 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
502 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
503 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
505 __m128i ifour = _mm_set1_epi32(4);
506 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
508 __m128d dummy_mask,cutoff_mask;
509 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
510 __m128d one = _mm_set1_pd(1.0);
511 __m128d two = _mm_set1_pd(2.0);
517 jindex = nlist->jindex;
519 shiftidx = nlist->shift;
521 shiftvec = fr->shift_vec[0];
522 fshift = fr->fshift[0];
523 facel = _mm_set1_pd(fr->epsfac);
524 charge = mdatoms->chargeA;
525 nvdwtype = fr->ntype;
527 vdwtype = mdatoms->typeA;
529 vftab = kernel_data->table_vdw->data;
530 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
532 invsqrta = fr->invsqrta;
534 gbtabscale = _mm_set1_pd(fr->gbtab.scale);
535 gbtab = fr->gbtab.data;
536 gbinvepsdiff = _mm_set1_pd((1.0/fr->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
538 /* Avoid stupid compiler warnings */
546 /* Start outer loop over neighborlists */
547 for(iidx=0; iidx<nri; iidx++)
549 /* Load shift vector for this list */
550 i_shift_offset = DIM*shiftidx[iidx];
552 /* Load limits for loop over neighbors */
553 j_index_start = jindex[iidx];
554 j_index_end = jindex[iidx+1];
556 /* Get outer coordinate index */
558 i_coord_offset = DIM*inr;
560 /* Load i particle coords and add shift vector */
561 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
563 fix0 = _mm_setzero_pd();
564 fiy0 = _mm_setzero_pd();
565 fiz0 = _mm_setzero_pd();
567 /* Load parameters for i particles */
568 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
569 isai0 = _mm_load1_pd(invsqrta+inr+0);
570 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
572 dvdasum = _mm_setzero_pd();
574 /* Start inner kernel loop */
575 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
578 /* Get j neighbor index, and coordinate index */
581 j_coord_offsetA = DIM*jnrA;
582 j_coord_offsetB = DIM*jnrB;
584 /* load j atom coordinates */
585 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
588 /* Calculate displacement vector */
589 dx00 = _mm_sub_pd(ix0,jx0);
590 dy00 = _mm_sub_pd(iy0,jy0);
591 dz00 = _mm_sub_pd(iz0,jz0);
593 /* Calculate squared distance and things based on it */
594 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
596 rinv00 = gmx_mm_invsqrt_pd(rsq00);
598 /* Load parameters for j particles */
599 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
600 isaj0 = gmx_mm_load_2real_swizzle_pd(invsqrta+jnrA+0,invsqrta+jnrB+0);
601 vdwjidx0A = 2*vdwtype[jnrA+0];
602 vdwjidx0B = 2*vdwtype[jnrB+0];
604 /**************************
605 * CALCULATE INTERACTIONS *
606 **************************/
608 r00 = _mm_mul_pd(rsq00,rinv00);
610 /* Compute parameters for interactions between i and j atoms */
611 qq00 = _mm_mul_pd(iq0,jq0);
612 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
613 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
615 /* Calculate table index by multiplying r with table scale and truncate to integer */
616 rt = _mm_mul_pd(r00,vftabscale);
617 vfitab = _mm_cvttpd_epi32(rt);
619 vfeps = _mm_frcz_pd(rt);
621 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
623 twovfeps = _mm_add_pd(vfeps,vfeps);
624 vfitab = _mm_slli_epi32(vfitab,3);
626 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
627 isaprod = _mm_mul_pd(isai0,isaj0);
628 gbqqfactor = _mm_xor_pd(signbit,_mm_mul_pd(qq00,_mm_mul_pd(isaprod,gbinvepsdiff)));
629 gbscale = _mm_mul_pd(isaprod,gbtabscale);
631 /* Calculate generalized born table index - this is a separate table from the normal one,
632 * but we use the same procedure by multiplying r with scale and truncating to integer.
634 rt = _mm_mul_pd(r00,gbscale);
635 gbitab = _mm_cvttpd_epi32(rt);
637 gbeps = _mm_frcz_pd(rt);
639 gbeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
641 gbitab = _mm_slli_epi32(gbitab,2);
643 Y = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) );
644 F = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,1) );
645 GMX_MM_TRANSPOSE2_PD(Y,F);
646 G = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) +2);
647 H = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,1) +2);
648 GMX_MM_TRANSPOSE2_PD(G,H);
649 Fp = _mm_macc_pd(gbeps,_mm_macc_pd(gbeps,H,G),F);
650 VV = _mm_macc_pd(gbeps,Fp,Y);
651 vgb = _mm_mul_pd(gbqqfactor,VV);
653 twogbeps = _mm_add_pd(gbeps,gbeps);
654 FF = _mm_macc_pd(_mm_macc_pd(twogbeps,H,G),gbeps,Fp);
655 fgb = _mm_mul_pd(gbqqfactor,_mm_mul_pd(FF,gbscale));
656 dvdatmp = _mm_mul_pd(minushalf,_mm_macc_pd(fgb,r00,vgb));
657 dvdasum = _mm_add_pd(dvdasum,dvdatmp);
658 gmx_mm_increment_2real_swizzle_pd(dvda+jnrA,dvda+jnrB,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj0,isaj0)));
659 velec = _mm_mul_pd(qq00,rinv00);
660 felec = _mm_mul_pd(_mm_msub_pd(velec,rinv00,fgb),rinv00);
662 /* CUBIC SPLINE TABLE DISPERSION */
663 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
664 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
665 GMX_MM_TRANSPOSE2_PD(Y,F);
666 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
667 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
668 GMX_MM_TRANSPOSE2_PD(G,H);
669 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
670 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
671 fvdw6 = _mm_mul_pd(c6_00,FF);
673 /* CUBIC SPLINE TABLE REPULSION */
674 vfitab = _mm_add_epi32(vfitab,ifour);
675 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
676 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
677 GMX_MM_TRANSPOSE2_PD(Y,F);
678 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
679 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
680 GMX_MM_TRANSPOSE2_PD(G,H);
681 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
682 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
683 fvdw12 = _mm_mul_pd(c12_00,FF);
684 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
686 fscal = _mm_add_pd(felec,fvdw);
688 /* Update vectorial force */
689 fix0 = _mm_macc_pd(dx00,fscal,fix0);
690 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
691 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
693 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,
694 _mm_mul_pd(dx00,fscal),
695 _mm_mul_pd(dy00,fscal),
696 _mm_mul_pd(dz00,fscal));
698 /* Inner loop uses 85 flops */
705 j_coord_offsetA = DIM*jnrA;
707 /* load j atom coordinates */
708 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
711 /* Calculate displacement vector */
712 dx00 = _mm_sub_pd(ix0,jx0);
713 dy00 = _mm_sub_pd(iy0,jy0);
714 dz00 = _mm_sub_pd(iz0,jz0);
716 /* Calculate squared distance and things based on it */
717 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
719 rinv00 = gmx_mm_invsqrt_pd(rsq00);
721 /* Load parameters for j particles */
722 jq0 = _mm_load_sd(charge+jnrA+0);
723 isaj0 = _mm_load_sd(invsqrta+jnrA+0);
724 vdwjidx0A = 2*vdwtype[jnrA+0];
726 /**************************
727 * CALCULATE INTERACTIONS *
728 **************************/
730 r00 = _mm_mul_pd(rsq00,rinv00);
732 /* Compute parameters for interactions between i and j atoms */
733 qq00 = _mm_mul_pd(iq0,jq0);
734 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
736 /* Calculate table index by multiplying r with table scale and truncate to integer */
737 rt = _mm_mul_pd(r00,vftabscale);
738 vfitab = _mm_cvttpd_epi32(rt);
740 vfeps = _mm_frcz_pd(rt);
742 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
744 twovfeps = _mm_add_pd(vfeps,vfeps);
745 vfitab = _mm_slli_epi32(vfitab,3);
747 /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
748 isaprod = _mm_mul_pd(isai0,isaj0);
749 gbqqfactor = _mm_xor_pd(signbit,_mm_mul_pd(qq00,_mm_mul_pd(isaprod,gbinvepsdiff)));
750 gbscale = _mm_mul_pd(isaprod,gbtabscale);
752 /* Calculate generalized born table index - this is a separate table from the normal one,
753 * but we use the same procedure by multiplying r with scale and truncating to integer.
755 rt = _mm_mul_pd(r00,gbscale);
756 gbitab = _mm_cvttpd_epi32(rt);
758 gbeps = _mm_frcz_pd(rt);
760 gbeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
762 gbitab = _mm_slli_epi32(gbitab,2);
764 Y = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) );
765 F = _mm_setzero_pd();
766 GMX_MM_TRANSPOSE2_PD(Y,F);
767 G = _mm_load_pd( gbtab + _mm_extract_epi32(gbitab,0) +2);
768 H = _mm_setzero_pd();
769 GMX_MM_TRANSPOSE2_PD(G,H);
770 Fp = _mm_macc_pd(gbeps,_mm_macc_pd(gbeps,H,G),F);
771 VV = _mm_macc_pd(gbeps,Fp,Y);
772 vgb = _mm_mul_pd(gbqqfactor,VV);
774 twogbeps = _mm_add_pd(gbeps,gbeps);
775 FF = _mm_macc_pd(_mm_macc_pd(twogbeps,H,G),gbeps,Fp);
776 fgb = _mm_mul_pd(gbqqfactor,_mm_mul_pd(FF,gbscale));
777 dvdatmp = _mm_mul_pd(minushalf,_mm_macc_pd(fgb,r00,vgb));
778 dvdatmp = _mm_unpacklo_pd(dvdatmp,_mm_setzero_pd());
779 dvdasum = _mm_add_pd(dvdasum,dvdatmp);
780 gmx_mm_increment_1real_pd(dvda+jnrA,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj0,isaj0)));
781 velec = _mm_mul_pd(qq00,rinv00);
782 felec = _mm_mul_pd(_mm_msub_pd(velec,rinv00,fgb),rinv00);
784 /* CUBIC SPLINE TABLE DISPERSION */
785 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
786 F = _mm_setzero_pd();
787 GMX_MM_TRANSPOSE2_PD(Y,F);
788 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
789 H = _mm_setzero_pd();
790 GMX_MM_TRANSPOSE2_PD(G,H);
791 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
792 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
793 fvdw6 = _mm_mul_pd(c6_00,FF);
795 /* CUBIC SPLINE TABLE REPULSION */
796 vfitab = _mm_add_epi32(vfitab,ifour);
797 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
798 F = _mm_setzero_pd();
799 GMX_MM_TRANSPOSE2_PD(Y,F);
800 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
801 H = _mm_setzero_pd();
802 GMX_MM_TRANSPOSE2_PD(G,H);
803 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
804 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
805 fvdw12 = _mm_mul_pd(c12_00,FF);
806 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
808 fscal = _mm_add_pd(felec,fvdw);
810 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
812 /* Update vectorial force */
813 fix0 = _mm_macc_pd(dx00,fscal,fix0);
814 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
815 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
817 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,
818 _mm_mul_pd(dx00,fscal),
819 _mm_mul_pd(dy00,fscal),
820 _mm_mul_pd(dz00,fscal));
822 /* Inner loop uses 85 flops */
825 /* End of innermost loop */
827 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
828 f+i_coord_offset,fshift+i_shift_offset);
830 dvdasum = _mm_mul_pd(dvdasum, _mm_mul_pd(isai0,isai0));
831 gmx_mm_update_1pot_pd(dvdasum,dvda+inr);
833 /* Increment number of inner iterations */
834 inneriter += j_index_end - j_index_start;
836 /* Outer loop uses 7 flops */
839 /* Increment number of outer iterations */
842 /* Update outer/inner flops */
844 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*7 + inneriter*85);