2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017,2018, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS avx_128_fma_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_avx_128_fma_double.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_128_fma_double
51 * Electrostatics interaction: Coulomb
52 * VdW interaction: LennardJones
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_VF_avx_128_fma_double
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int j_coord_offsetA,j_coord_offsetB;
75 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
77 real *shiftvec,*fshift,*x,*f;
78 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
80 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
82 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
84 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
85 int vdwjidx0A,vdwjidx0B;
86 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
87 int vdwjidx1A,vdwjidx1B;
88 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
89 int vdwjidx2A,vdwjidx2B;
90 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
91 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
92 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
93 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
94 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
95 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
96 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
97 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
98 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
99 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
100 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
103 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
106 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
107 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
108 __m128d dummy_mask,cutoff_mask;
109 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
110 __m128d one = _mm_set1_pd(1.0);
111 __m128d two = _mm_set1_pd(2.0);
117 jindex = nlist->jindex;
119 shiftidx = nlist->shift;
121 shiftvec = fr->shift_vec[0];
122 fshift = fr->fshift[0];
123 facel = _mm_set1_pd(fr->ic->epsfac);
124 charge = mdatoms->chargeA;
125 nvdwtype = fr->ntype;
127 vdwtype = mdatoms->typeA;
129 /* Setup water-specific parameters */
130 inr = nlist->iinr[0];
131 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
132 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
133 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
134 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
136 jq0 = _mm_set1_pd(charge[inr+0]);
137 jq1 = _mm_set1_pd(charge[inr+1]);
138 jq2 = _mm_set1_pd(charge[inr+2]);
139 vdwjidx0A = 2*vdwtype[inr+0];
140 qq00 = _mm_mul_pd(iq0,jq0);
141 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
142 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
143 qq01 = _mm_mul_pd(iq0,jq1);
144 qq02 = _mm_mul_pd(iq0,jq2);
145 qq10 = _mm_mul_pd(iq1,jq0);
146 qq11 = _mm_mul_pd(iq1,jq1);
147 qq12 = _mm_mul_pd(iq1,jq2);
148 qq20 = _mm_mul_pd(iq2,jq0);
149 qq21 = _mm_mul_pd(iq2,jq1);
150 qq22 = _mm_mul_pd(iq2,jq2);
152 /* Avoid stupid compiler warnings */
160 /* Start outer loop over neighborlists */
161 for(iidx=0; iidx<nri; iidx++)
163 /* Load shift vector for this list */
164 i_shift_offset = DIM*shiftidx[iidx];
166 /* Load limits for loop over neighbors */
167 j_index_start = jindex[iidx];
168 j_index_end = jindex[iidx+1];
170 /* Get outer coordinate index */
172 i_coord_offset = DIM*inr;
174 /* Load i particle coords and add shift vector */
175 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
176 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
178 fix0 = _mm_setzero_pd();
179 fiy0 = _mm_setzero_pd();
180 fiz0 = _mm_setzero_pd();
181 fix1 = _mm_setzero_pd();
182 fiy1 = _mm_setzero_pd();
183 fiz1 = _mm_setzero_pd();
184 fix2 = _mm_setzero_pd();
185 fiy2 = _mm_setzero_pd();
186 fiz2 = _mm_setzero_pd();
188 /* Reset potential sums */
189 velecsum = _mm_setzero_pd();
190 vvdwsum = _mm_setzero_pd();
192 /* Start inner kernel loop */
193 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
196 /* Get j neighbor index, and coordinate index */
199 j_coord_offsetA = DIM*jnrA;
200 j_coord_offsetB = DIM*jnrB;
202 /* load j atom coordinates */
203 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
204 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
206 /* Calculate displacement vector */
207 dx00 = _mm_sub_pd(ix0,jx0);
208 dy00 = _mm_sub_pd(iy0,jy0);
209 dz00 = _mm_sub_pd(iz0,jz0);
210 dx01 = _mm_sub_pd(ix0,jx1);
211 dy01 = _mm_sub_pd(iy0,jy1);
212 dz01 = _mm_sub_pd(iz0,jz1);
213 dx02 = _mm_sub_pd(ix0,jx2);
214 dy02 = _mm_sub_pd(iy0,jy2);
215 dz02 = _mm_sub_pd(iz0,jz2);
216 dx10 = _mm_sub_pd(ix1,jx0);
217 dy10 = _mm_sub_pd(iy1,jy0);
218 dz10 = _mm_sub_pd(iz1,jz0);
219 dx11 = _mm_sub_pd(ix1,jx1);
220 dy11 = _mm_sub_pd(iy1,jy1);
221 dz11 = _mm_sub_pd(iz1,jz1);
222 dx12 = _mm_sub_pd(ix1,jx2);
223 dy12 = _mm_sub_pd(iy1,jy2);
224 dz12 = _mm_sub_pd(iz1,jz2);
225 dx20 = _mm_sub_pd(ix2,jx0);
226 dy20 = _mm_sub_pd(iy2,jy0);
227 dz20 = _mm_sub_pd(iz2,jz0);
228 dx21 = _mm_sub_pd(ix2,jx1);
229 dy21 = _mm_sub_pd(iy2,jy1);
230 dz21 = _mm_sub_pd(iz2,jz1);
231 dx22 = _mm_sub_pd(ix2,jx2);
232 dy22 = _mm_sub_pd(iy2,jy2);
233 dz22 = _mm_sub_pd(iz2,jz2);
235 /* Calculate squared distance and things based on it */
236 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
237 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
238 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
239 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
240 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
241 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
242 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
243 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
244 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
246 rinv00 = avx128fma_invsqrt_d(rsq00);
247 rinv01 = avx128fma_invsqrt_d(rsq01);
248 rinv02 = avx128fma_invsqrt_d(rsq02);
249 rinv10 = avx128fma_invsqrt_d(rsq10);
250 rinv11 = avx128fma_invsqrt_d(rsq11);
251 rinv12 = avx128fma_invsqrt_d(rsq12);
252 rinv20 = avx128fma_invsqrt_d(rsq20);
253 rinv21 = avx128fma_invsqrt_d(rsq21);
254 rinv22 = avx128fma_invsqrt_d(rsq22);
256 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
257 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
258 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
259 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
260 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
261 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
262 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
263 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
264 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
266 fjx0 = _mm_setzero_pd();
267 fjy0 = _mm_setzero_pd();
268 fjz0 = _mm_setzero_pd();
269 fjx1 = _mm_setzero_pd();
270 fjy1 = _mm_setzero_pd();
271 fjz1 = _mm_setzero_pd();
272 fjx2 = _mm_setzero_pd();
273 fjy2 = _mm_setzero_pd();
274 fjz2 = _mm_setzero_pd();
276 /**************************
277 * CALCULATE INTERACTIONS *
278 **************************/
280 /* COULOMB ELECTROSTATICS */
281 velec = _mm_mul_pd(qq00,rinv00);
282 felec = _mm_mul_pd(velec,rinvsq00);
284 /* LENNARD-JONES DISPERSION/REPULSION */
286 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
287 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
288 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
289 vvdw = _mm_msub_pd( vvdw12,one_twelfth, _mm_mul_pd(vvdw6,one_sixth) );
290 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
292 /* Update potential sum for this i atom from the interaction with this j atom. */
293 velecsum = _mm_add_pd(velecsum,velec);
294 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
296 fscal = _mm_add_pd(felec,fvdw);
298 /* Update vectorial force */
299 fix0 = _mm_macc_pd(dx00,fscal,fix0);
300 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
301 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
303 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
304 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
305 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
307 /**************************
308 * CALCULATE INTERACTIONS *
309 **************************/
311 /* COULOMB ELECTROSTATICS */
312 velec = _mm_mul_pd(qq01,rinv01);
313 felec = _mm_mul_pd(velec,rinvsq01);
315 /* Update potential sum for this i atom from the interaction with this j atom. */
316 velecsum = _mm_add_pd(velecsum,velec);
320 /* Update vectorial force */
321 fix0 = _mm_macc_pd(dx01,fscal,fix0);
322 fiy0 = _mm_macc_pd(dy01,fscal,fiy0);
323 fiz0 = _mm_macc_pd(dz01,fscal,fiz0);
325 fjx1 = _mm_macc_pd(dx01,fscal,fjx1);
326 fjy1 = _mm_macc_pd(dy01,fscal,fjy1);
327 fjz1 = _mm_macc_pd(dz01,fscal,fjz1);
329 /**************************
330 * CALCULATE INTERACTIONS *
331 **************************/
333 /* COULOMB ELECTROSTATICS */
334 velec = _mm_mul_pd(qq02,rinv02);
335 felec = _mm_mul_pd(velec,rinvsq02);
337 /* Update potential sum for this i atom from the interaction with this j atom. */
338 velecsum = _mm_add_pd(velecsum,velec);
342 /* Update vectorial force */
343 fix0 = _mm_macc_pd(dx02,fscal,fix0);
344 fiy0 = _mm_macc_pd(dy02,fscal,fiy0);
345 fiz0 = _mm_macc_pd(dz02,fscal,fiz0);
347 fjx2 = _mm_macc_pd(dx02,fscal,fjx2);
348 fjy2 = _mm_macc_pd(dy02,fscal,fjy2);
349 fjz2 = _mm_macc_pd(dz02,fscal,fjz2);
351 /**************************
352 * CALCULATE INTERACTIONS *
353 **************************/
355 /* COULOMB ELECTROSTATICS */
356 velec = _mm_mul_pd(qq10,rinv10);
357 felec = _mm_mul_pd(velec,rinvsq10);
359 /* Update potential sum for this i atom from the interaction with this j atom. */
360 velecsum = _mm_add_pd(velecsum,velec);
364 /* Update vectorial force */
365 fix1 = _mm_macc_pd(dx10,fscal,fix1);
366 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
367 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
369 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
370 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
371 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
373 /**************************
374 * CALCULATE INTERACTIONS *
375 **************************/
377 /* COULOMB ELECTROSTATICS */
378 velec = _mm_mul_pd(qq11,rinv11);
379 felec = _mm_mul_pd(velec,rinvsq11);
381 /* Update potential sum for this i atom from the interaction with this j atom. */
382 velecsum = _mm_add_pd(velecsum,velec);
386 /* Update vectorial force */
387 fix1 = _mm_macc_pd(dx11,fscal,fix1);
388 fiy1 = _mm_macc_pd(dy11,fscal,fiy1);
389 fiz1 = _mm_macc_pd(dz11,fscal,fiz1);
391 fjx1 = _mm_macc_pd(dx11,fscal,fjx1);
392 fjy1 = _mm_macc_pd(dy11,fscal,fjy1);
393 fjz1 = _mm_macc_pd(dz11,fscal,fjz1);
395 /**************************
396 * CALCULATE INTERACTIONS *
397 **************************/
399 /* COULOMB ELECTROSTATICS */
400 velec = _mm_mul_pd(qq12,rinv12);
401 felec = _mm_mul_pd(velec,rinvsq12);
403 /* Update potential sum for this i atom from the interaction with this j atom. */
404 velecsum = _mm_add_pd(velecsum,velec);
408 /* Update vectorial force */
409 fix1 = _mm_macc_pd(dx12,fscal,fix1);
410 fiy1 = _mm_macc_pd(dy12,fscal,fiy1);
411 fiz1 = _mm_macc_pd(dz12,fscal,fiz1);
413 fjx2 = _mm_macc_pd(dx12,fscal,fjx2);
414 fjy2 = _mm_macc_pd(dy12,fscal,fjy2);
415 fjz2 = _mm_macc_pd(dz12,fscal,fjz2);
417 /**************************
418 * CALCULATE INTERACTIONS *
419 **************************/
421 /* COULOMB ELECTROSTATICS */
422 velec = _mm_mul_pd(qq20,rinv20);
423 felec = _mm_mul_pd(velec,rinvsq20);
425 /* Update potential sum for this i atom from the interaction with this j atom. */
426 velecsum = _mm_add_pd(velecsum,velec);
430 /* Update vectorial force */
431 fix2 = _mm_macc_pd(dx20,fscal,fix2);
432 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
433 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
435 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
436 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
437 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
439 /**************************
440 * CALCULATE INTERACTIONS *
441 **************************/
443 /* COULOMB ELECTROSTATICS */
444 velec = _mm_mul_pd(qq21,rinv21);
445 felec = _mm_mul_pd(velec,rinvsq21);
447 /* Update potential sum for this i atom from the interaction with this j atom. */
448 velecsum = _mm_add_pd(velecsum,velec);
452 /* Update vectorial force */
453 fix2 = _mm_macc_pd(dx21,fscal,fix2);
454 fiy2 = _mm_macc_pd(dy21,fscal,fiy2);
455 fiz2 = _mm_macc_pd(dz21,fscal,fiz2);
457 fjx1 = _mm_macc_pd(dx21,fscal,fjx1);
458 fjy1 = _mm_macc_pd(dy21,fscal,fjy1);
459 fjz1 = _mm_macc_pd(dz21,fscal,fjz1);
461 /**************************
462 * CALCULATE INTERACTIONS *
463 **************************/
465 /* COULOMB ELECTROSTATICS */
466 velec = _mm_mul_pd(qq22,rinv22);
467 felec = _mm_mul_pd(velec,rinvsq22);
469 /* Update potential sum for this i atom from the interaction with this j atom. */
470 velecsum = _mm_add_pd(velecsum,velec);
474 /* Update vectorial force */
475 fix2 = _mm_macc_pd(dx22,fscal,fix2);
476 fiy2 = _mm_macc_pd(dy22,fscal,fiy2);
477 fiz2 = _mm_macc_pd(dz22,fscal,fiz2);
479 fjx2 = _mm_macc_pd(dx22,fscal,fjx2);
480 fjy2 = _mm_macc_pd(dy22,fscal,fjy2);
481 fjz2 = _mm_macc_pd(dz22,fscal,fjz2);
483 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
485 /* Inner loop uses 291 flops */
492 j_coord_offsetA = DIM*jnrA;
494 /* load j atom coordinates */
495 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
496 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
498 /* Calculate displacement vector */
499 dx00 = _mm_sub_pd(ix0,jx0);
500 dy00 = _mm_sub_pd(iy0,jy0);
501 dz00 = _mm_sub_pd(iz0,jz0);
502 dx01 = _mm_sub_pd(ix0,jx1);
503 dy01 = _mm_sub_pd(iy0,jy1);
504 dz01 = _mm_sub_pd(iz0,jz1);
505 dx02 = _mm_sub_pd(ix0,jx2);
506 dy02 = _mm_sub_pd(iy0,jy2);
507 dz02 = _mm_sub_pd(iz0,jz2);
508 dx10 = _mm_sub_pd(ix1,jx0);
509 dy10 = _mm_sub_pd(iy1,jy0);
510 dz10 = _mm_sub_pd(iz1,jz0);
511 dx11 = _mm_sub_pd(ix1,jx1);
512 dy11 = _mm_sub_pd(iy1,jy1);
513 dz11 = _mm_sub_pd(iz1,jz1);
514 dx12 = _mm_sub_pd(ix1,jx2);
515 dy12 = _mm_sub_pd(iy1,jy2);
516 dz12 = _mm_sub_pd(iz1,jz2);
517 dx20 = _mm_sub_pd(ix2,jx0);
518 dy20 = _mm_sub_pd(iy2,jy0);
519 dz20 = _mm_sub_pd(iz2,jz0);
520 dx21 = _mm_sub_pd(ix2,jx1);
521 dy21 = _mm_sub_pd(iy2,jy1);
522 dz21 = _mm_sub_pd(iz2,jz1);
523 dx22 = _mm_sub_pd(ix2,jx2);
524 dy22 = _mm_sub_pd(iy2,jy2);
525 dz22 = _mm_sub_pd(iz2,jz2);
527 /* Calculate squared distance and things based on it */
528 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
529 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
530 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
531 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
532 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
533 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
534 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
535 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
536 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
538 rinv00 = avx128fma_invsqrt_d(rsq00);
539 rinv01 = avx128fma_invsqrt_d(rsq01);
540 rinv02 = avx128fma_invsqrt_d(rsq02);
541 rinv10 = avx128fma_invsqrt_d(rsq10);
542 rinv11 = avx128fma_invsqrt_d(rsq11);
543 rinv12 = avx128fma_invsqrt_d(rsq12);
544 rinv20 = avx128fma_invsqrt_d(rsq20);
545 rinv21 = avx128fma_invsqrt_d(rsq21);
546 rinv22 = avx128fma_invsqrt_d(rsq22);
548 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
549 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
550 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
551 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
552 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
553 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
554 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
555 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
556 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
558 fjx0 = _mm_setzero_pd();
559 fjy0 = _mm_setzero_pd();
560 fjz0 = _mm_setzero_pd();
561 fjx1 = _mm_setzero_pd();
562 fjy1 = _mm_setzero_pd();
563 fjz1 = _mm_setzero_pd();
564 fjx2 = _mm_setzero_pd();
565 fjy2 = _mm_setzero_pd();
566 fjz2 = _mm_setzero_pd();
568 /**************************
569 * CALCULATE INTERACTIONS *
570 **************************/
572 /* COULOMB ELECTROSTATICS */
573 velec = _mm_mul_pd(qq00,rinv00);
574 felec = _mm_mul_pd(velec,rinvsq00);
576 /* LENNARD-JONES DISPERSION/REPULSION */
578 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
579 vvdw6 = _mm_mul_pd(c6_00,rinvsix);
580 vvdw12 = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
581 vvdw = _mm_msub_pd( vvdw12,one_twelfth, _mm_mul_pd(vvdw6,one_sixth) );
582 fvdw = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
584 /* Update potential sum for this i atom from the interaction with this j atom. */
585 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
586 velecsum = _mm_add_pd(velecsum,velec);
587 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
588 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
590 fscal = _mm_add_pd(felec,fvdw);
592 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
594 /* Update vectorial force */
595 fix0 = _mm_macc_pd(dx00,fscal,fix0);
596 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
597 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
599 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
600 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
601 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
603 /**************************
604 * CALCULATE INTERACTIONS *
605 **************************/
607 /* COULOMB ELECTROSTATICS */
608 velec = _mm_mul_pd(qq01,rinv01);
609 felec = _mm_mul_pd(velec,rinvsq01);
611 /* Update potential sum for this i atom from the interaction with this j atom. */
612 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
613 velecsum = _mm_add_pd(velecsum,velec);
617 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
619 /* Update vectorial force */
620 fix0 = _mm_macc_pd(dx01,fscal,fix0);
621 fiy0 = _mm_macc_pd(dy01,fscal,fiy0);
622 fiz0 = _mm_macc_pd(dz01,fscal,fiz0);
624 fjx1 = _mm_macc_pd(dx01,fscal,fjx1);
625 fjy1 = _mm_macc_pd(dy01,fscal,fjy1);
626 fjz1 = _mm_macc_pd(dz01,fscal,fjz1);
628 /**************************
629 * CALCULATE INTERACTIONS *
630 **************************/
632 /* COULOMB ELECTROSTATICS */
633 velec = _mm_mul_pd(qq02,rinv02);
634 felec = _mm_mul_pd(velec,rinvsq02);
636 /* Update potential sum for this i atom from the interaction with this j atom. */
637 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
638 velecsum = _mm_add_pd(velecsum,velec);
642 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
644 /* Update vectorial force */
645 fix0 = _mm_macc_pd(dx02,fscal,fix0);
646 fiy0 = _mm_macc_pd(dy02,fscal,fiy0);
647 fiz0 = _mm_macc_pd(dz02,fscal,fiz0);
649 fjx2 = _mm_macc_pd(dx02,fscal,fjx2);
650 fjy2 = _mm_macc_pd(dy02,fscal,fjy2);
651 fjz2 = _mm_macc_pd(dz02,fscal,fjz2);
653 /**************************
654 * CALCULATE INTERACTIONS *
655 **************************/
657 /* COULOMB ELECTROSTATICS */
658 velec = _mm_mul_pd(qq10,rinv10);
659 felec = _mm_mul_pd(velec,rinvsq10);
661 /* Update potential sum for this i atom from the interaction with this j atom. */
662 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
663 velecsum = _mm_add_pd(velecsum,velec);
667 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
669 /* Update vectorial force */
670 fix1 = _mm_macc_pd(dx10,fscal,fix1);
671 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
672 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
674 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
675 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
676 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
678 /**************************
679 * CALCULATE INTERACTIONS *
680 **************************/
682 /* COULOMB ELECTROSTATICS */
683 velec = _mm_mul_pd(qq11,rinv11);
684 felec = _mm_mul_pd(velec,rinvsq11);
686 /* Update potential sum for this i atom from the interaction with this j atom. */
687 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
688 velecsum = _mm_add_pd(velecsum,velec);
692 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
694 /* Update vectorial force */
695 fix1 = _mm_macc_pd(dx11,fscal,fix1);
696 fiy1 = _mm_macc_pd(dy11,fscal,fiy1);
697 fiz1 = _mm_macc_pd(dz11,fscal,fiz1);
699 fjx1 = _mm_macc_pd(dx11,fscal,fjx1);
700 fjy1 = _mm_macc_pd(dy11,fscal,fjy1);
701 fjz1 = _mm_macc_pd(dz11,fscal,fjz1);
703 /**************************
704 * CALCULATE INTERACTIONS *
705 **************************/
707 /* COULOMB ELECTROSTATICS */
708 velec = _mm_mul_pd(qq12,rinv12);
709 felec = _mm_mul_pd(velec,rinvsq12);
711 /* Update potential sum for this i atom from the interaction with this j atom. */
712 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
713 velecsum = _mm_add_pd(velecsum,velec);
717 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
719 /* Update vectorial force */
720 fix1 = _mm_macc_pd(dx12,fscal,fix1);
721 fiy1 = _mm_macc_pd(dy12,fscal,fiy1);
722 fiz1 = _mm_macc_pd(dz12,fscal,fiz1);
724 fjx2 = _mm_macc_pd(dx12,fscal,fjx2);
725 fjy2 = _mm_macc_pd(dy12,fscal,fjy2);
726 fjz2 = _mm_macc_pd(dz12,fscal,fjz2);
728 /**************************
729 * CALCULATE INTERACTIONS *
730 **************************/
732 /* COULOMB ELECTROSTATICS */
733 velec = _mm_mul_pd(qq20,rinv20);
734 felec = _mm_mul_pd(velec,rinvsq20);
736 /* Update potential sum for this i atom from the interaction with this j atom. */
737 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
738 velecsum = _mm_add_pd(velecsum,velec);
742 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
744 /* Update vectorial force */
745 fix2 = _mm_macc_pd(dx20,fscal,fix2);
746 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
747 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
749 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
750 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
751 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
753 /**************************
754 * CALCULATE INTERACTIONS *
755 **************************/
757 /* COULOMB ELECTROSTATICS */
758 velec = _mm_mul_pd(qq21,rinv21);
759 felec = _mm_mul_pd(velec,rinvsq21);
761 /* Update potential sum for this i atom from the interaction with this j atom. */
762 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
763 velecsum = _mm_add_pd(velecsum,velec);
767 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
769 /* Update vectorial force */
770 fix2 = _mm_macc_pd(dx21,fscal,fix2);
771 fiy2 = _mm_macc_pd(dy21,fscal,fiy2);
772 fiz2 = _mm_macc_pd(dz21,fscal,fiz2);
774 fjx1 = _mm_macc_pd(dx21,fscal,fjx1);
775 fjy1 = _mm_macc_pd(dy21,fscal,fjy1);
776 fjz1 = _mm_macc_pd(dz21,fscal,fjz1);
778 /**************************
779 * CALCULATE INTERACTIONS *
780 **************************/
782 /* COULOMB ELECTROSTATICS */
783 velec = _mm_mul_pd(qq22,rinv22);
784 felec = _mm_mul_pd(velec,rinvsq22);
786 /* Update potential sum for this i atom from the interaction with this j atom. */
787 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
788 velecsum = _mm_add_pd(velecsum,velec);
792 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
794 /* Update vectorial force */
795 fix2 = _mm_macc_pd(dx22,fscal,fix2);
796 fiy2 = _mm_macc_pd(dy22,fscal,fiy2);
797 fiz2 = _mm_macc_pd(dz22,fscal,fiz2);
799 fjx2 = _mm_macc_pd(dx22,fscal,fjx2);
800 fjy2 = _mm_macc_pd(dy22,fscal,fjy2);
801 fjz2 = _mm_macc_pd(dz22,fscal,fjz2);
803 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
805 /* Inner loop uses 291 flops */
808 /* End of innermost loop */
810 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
811 f+i_coord_offset,fshift+i_shift_offset);
814 /* Update potential energies */
815 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
816 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
818 /* Increment number of inner iterations */
819 inneriter += j_index_end - j_index_start;
821 /* Outer loop uses 20 flops */
824 /* Increment number of outer iterations */
827 /* Update outer/inner flops */
829 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*291);
832 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_128_fma_double
833 * Electrostatics interaction: Coulomb
834 * VdW interaction: LennardJones
835 * Geometry: Water3-Water3
836 * Calculate force/pot: Force
839 nb_kernel_ElecCoul_VdwLJ_GeomW3W3_F_avx_128_fma_double
840 (t_nblist * gmx_restrict nlist,
841 rvec * gmx_restrict xx,
842 rvec * gmx_restrict ff,
843 struct t_forcerec * gmx_restrict fr,
844 t_mdatoms * gmx_restrict mdatoms,
845 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
846 t_nrnb * gmx_restrict nrnb)
848 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
849 * just 0 for non-waters.
850 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
851 * jnr indices corresponding to data put in the four positions in the SIMD register.
853 int i_shift_offset,i_coord_offset,outeriter,inneriter;
854 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
856 int j_coord_offsetA,j_coord_offsetB;
857 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
859 real *shiftvec,*fshift,*x,*f;
860 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
862 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
864 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
866 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
867 int vdwjidx0A,vdwjidx0B;
868 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
869 int vdwjidx1A,vdwjidx1B;
870 __m128d jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
871 int vdwjidx2A,vdwjidx2B;
872 __m128d jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
873 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
874 __m128d dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
875 __m128d dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
876 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
877 __m128d dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
878 __m128d dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
879 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
880 __m128d dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
881 __m128d dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
882 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
885 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
888 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
889 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
890 __m128d dummy_mask,cutoff_mask;
891 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
892 __m128d one = _mm_set1_pd(1.0);
893 __m128d two = _mm_set1_pd(2.0);
899 jindex = nlist->jindex;
901 shiftidx = nlist->shift;
903 shiftvec = fr->shift_vec[0];
904 fshift = fr->fshift[0];
905 facel = _mm_set1_pd(fr->ic->epsfac);
906 charge = mdatoms->chargeA;
907 nvdwtype = fr->ntype;
909 vdwtype = mdatoms->typeA;
911 /* Setup water-specific parameters */
912 inr = nlist->iinr[0];
913 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
914 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
915 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
916 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
918 jq0 = _mm_set1_pd(charge[inr+0]);
919 jq1 = _mm_set1_pd(charge[inr+1]);
920 jq2 = _mm_set1_pd(charge[inr+2]);
921 vdwjidx0A = 2*vdwtype[inr+0];
922 qq00 = _mm_mul_pd(iq0,jq0);
923 c6_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A]);
924 c12_00 = _mm_set1_pd(vdwparam[vdwioffset0+vdwjidx0A+1]);
925 qq01 = _mm_mul_pd(iq0,jq1);
926 qq02 = _mm_mul_pd(iq0,jq2);
927 qq10 = _mm_mul_pd(iq1,jq0);
928 qq11 = _mm_mul_pd(iq1,jq1);
929 qq12 = _mm_mul_pd(iq1,jq2);
930 qq20 = _mm_mul_pd(iq2,jq0);
931 qq21 = _mm_mul_pd(iq2,jq1);
932 qq22 = _mm_mul_pd(iq2,jq2);
934 /* Avoid stupid compiler warnings */
942 /* Start outer loop over neighborlists */
943 for(iidx=0; iidx<nri; iidx++)
945 /* Load shift vector for this list */
946 i_shift_offset = DIM*shiftidx[iidx];
948 /* Load limits for loop over neighbors */
949 j_index_start = jindex[iidx];
950 j_index_end = jindex[iidx+1];
952 /* Get outer coordinate index */
954 i_coord_offset = DIM*inr;
956 /* Load i particle coords and add shift vector */
957 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
958 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
960 fix0 = _mm_setzero_pd();
961 fiy0 = _mm_setzero_pd();
962 fiz0 = _mm_setzero_pd();
963 fix1 = _mm_setzero_pd();
964 fiy1 = _mm_setzero_pd();
965 fiz1 = _mm_setzero_pd();
966 fix2 = _mm_setzero_pd();
967 fiy2 = _mm_setzero_pd();
968 fiz2 = _mm_setzero_pd();
970 /* Start inner kernel loop */
971 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
974 /* Get j neighbor index, and coordinate index */
977 j_coord_offsetA = DIM*jnrA;
978 j_coord_offsetB = DIM*jnrB;
980 /* load j atom coordinates */
981 gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
982 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
984 /* Calculate displacement vector */
985 dx00 = _mm_sub_pd(ix0,jx0);
986 dy00 = _mm_sub_pd(iy0,jy0);
987 dz00 = _mm_sub_pd(iz0,jz0);
988 dx01 = _mm_sub_pd(ix0,jx1);
989 dy01 = _mm_sub_pd(iy0,jy1);
990 dz01 = _mm_sub_pd(iz0,jz1);
991 dx02 = _mm_sub_pd(ix0,jx2);
992 dy02 = _mm_sub_pd(iy0,jy2);
993 dz02 = _mm_sub_pd(iz0,jz2);
994 dx10 = _mm_sub_pd(ix1,jx0);
995 dy10 = _mm_sub_pd(iy1,jy0);
996 dz10 = _mm_sub_pd(iz1,jz0);
997 dx11 = _mm_sub_pd(ix1,jx1);
998 dy11 = _mm_sub_pd(iy1,jy1);
999 dz11 = _mm_sub_pd(iz1,jz1);
1000 dx12 = _mm_sub_pd(ix1,jx2);
1001 dy12 = _mm_sub_pd(iy1,jy2);
1002 dz12 = _mm_sub_pd(iz1,jz2);
1003 dx20 = _mm_sub_pd(ix2,jx0);
1004 dy20 = _mm_sub_pd(iy2,jy0);
1005 dz20 = _mm_sub_pd(iz2,jz0);
1006 dx21 = _mm_sub_pd(ix2,jx1);
1007 dy21 = _mm_sub_pd(iy2,jy1);
1008 dz21 = _mm_sub_pd(iz2,jz1);
1009 dx22 = _mm_sub_pd(ix2,jx2);
1010 dy22 = _mm_sub_pd(iy2,jy2);
1011 dz22 = _mm_sub_pd(iz2,jz2);
1013 /* Calculate squared distance and things based on it */
1014 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1015 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1016 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1017 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1018 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1019 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1020 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1021 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1022 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1024 rinv00 = avx128fma_invsqrt_d(rsq00);
1025 rinv01 = avx128fma_invsqrt_d(rsq01);
1026 rinv02 = avx128fma_invsqrt_d(rsq02);
1027 rinv10 = avx128fma_invsqrt_d(rsq10);
1028 rinv11 = avx128fma_invsqrt_d(rsq11);
1029 rinv12 = avx128fma_invsqrt_d(rsq12);
1030 rinv20 = avx128fma_invsqrt_d(rsq20);
1031 rinv21 = avx128fma_invsqrt_d(rsq21);
1032 rinv22 = avx128fma_invsqrt_d(rsq22);
1034 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1035 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1036 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1037 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1038 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1039 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1040 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1041 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1042 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1044 fjx0 = _mm_setzero_pd();
1045 fjy0 = _mm_setzero_pd();
1046 fjz0 = _mm_setzero_pd();
1047 fjx1 = _mm_setzero_pd();
1048 fjy1 = _mm_setzero_pd();
1049 fjz1 = _mm_setzero_pd();
1050 fjx2 = _mm_setzero_pd();
1051 fjy2 = _mm_setzero_pd();
1052 fjz2 = _mm_setzero_pd();
1054 /**************************
1055 * CALCULATE INTERACTIONS *
1056 **************************/
1058 /* COULOMB ELECTROSTATICS */
1059 velec = _mm_mul_pd(qq00,rinv00);
1060 felec = _mm_mul_pd(velec,rinvsq00);
1062 /* LENNARD-JONES DISPERSION/REPULSION */
1064 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1065 fvdw = _mm_mul_pd(_mm_msub_pd(c12_00,rinvsix,c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1067 fscal = _mm_add_pd(felec,fvdw);
1069 /* Update vectorial force */
1070 fix0 = _mm_macc_pd(dx00,fscal,fix0);
1071 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
1072 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
1074 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
1075 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
1076 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
1078 /**************************
1079 * CALCULATE INTERACTIONS *
1080 **************************/
1082 /* COULOMB ELECTROSTATICS */
1083 velec = _mm_mul_pd(qq01,rinv01);
1084 felec = _mm_mul_pd(velec,rinvsq01);
1088 /* Update vectorial force */
1089 fix0 = _mm_macc_pd(dx01,fscal,fix0);
1090 fiy0 = _mm_macc_pd(dy01,fscal,fiy0);
1091 fiz0 = _mm_macc_pd(dz01,fscal,fiz0);
1093 fjx1 = _mm_macc_pd(dx01,fscal,fjx1);
1094 fjy1 = _mm_macc_pd(dy01,fscal,fjy1);
1095 fjz1 = _mm_macc_pd(dz01,fscal,fjz1);
1097 /**************************
1098 * CALCULATE INTERACTIONS *
1099 **************************/
1101 /* COULOMB ELECTROSTATICS */
1102 velec = _mm_mul_pd(qq02,rinv02);
1103 felec = _mm_mul_pd(velec,rinvsq02);
1107 /* Update vectorial force */
1108 fix0 = _mm_macc_pd(dx02,fscal,fix0);
1109 fiy0 = _mm_macc_pd(dy02,fscal,fiy0);
1110 fiz0 = _mm_macc_pd(dz02,fscal,fiz0);
1112 fjx2 = _mm_macc_pd(dx02,fscal,fjx2);
1113 fjy2 = _mm_macc_pd(dy02,fscal,fjy2);
1114 fjz2 = _mm_macc_pd(dz02,fscal,fjz2);
1116 /**************************
1117 * CALCULATE INTERACTIONS *
1118 **************************/
1120 /* COULOMB ELECTROSTATICS */
1121 velec = _mm_mul_pd(qq10,rinv10);
1122 felec = _mm_mul_pd(velec,rinvsq10);
1126 /* Update vectorial force */
1127 fix1 = _mm_macc_pd(dx10,fscal,fix1);
1128 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
1129 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
1131 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
1132 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
1133 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
1135 /**************************
1136 * CALCULATE INTERACTIONS *
1137 **************************/
1139 /* COULOMB ELECTROSTATICS */
1140 velec = _mm_mul_pd(qq11,rinv11);
1141 felec = _mm_mul_pd(velec,rinvsq11);
1145 /* Update vectorial force */
1146 fix1 = _mm_macc_pd(dx11,fscal,fix1);
1147 fiy1 = _mm_macc_pd(dy11,fscal,fiy1);
1148 fiz1 = _mm_macc_pd(dz11,fscal,fiz1);
1150 fjx1 = _mm_macc_pd(dx11,fscal,fjx1);
1151 fjy1 = _mm_macc_pd(dy11,fscal,fjy1);
1152 fjz1 = _mm_macc_pd(dz11,fscal,fjz1);
1154 /**************************
1155 * CALCULATE INTERACTIONS *
1156 **************************/
1158 /* COULOMB ELECTROSTATICS */
1159 velec = _mm_mul_pd(qq12,rinv12);
1160 felec = _mm_mul_pd(velec,rinvsq12);
1164 /* Update vectorial force */
1165 fix1 = _mm_macc_pd(dx12,fscal,fix1);
1166 fiy1 = _mm_macc_pd(dy12,fscal,fiy1);
1167 fiz1 = _mm_macc_pd(dz12,fscal,fiz1);
1169 fjx2 = _mm_macc_pd(dx12,fscal,fjx2);
1170 fjy2 = _mm_macc_pd(dy12,fscal,fjy2);
1171 fjz2 = _mm_macc_pd(dz12,fscal,fjz2);
1173 /**************************
1174 * CALCULATE INTERACTIONS *
1175 **************************/
1177 /* COULOMB ELECTROSTATICS */
1178 velec = _mm_mul_pd(qq20,rinv20);
1179 felec = _mm_mul_pd(velec,rinvsq20);
1183 /* Update vectorial force */
1184 fix2 = _mm_macc_pd(dx20,fscal,fix2);
1185 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
1186 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
1188 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
1189 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
1190 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
1192 /**************************
1193 * CALCULATE INTERACTIONS *
1194 **************************/
1196 /* COULOMB ELECTROSTATICS */
1197 velec = _mm_mul_pd(qq21,rinv21);
1198 felec = _mm_mul_pd(velec,rinvsq21);
1202 /* Update vectorial force */
1203 fix2 = _mm_macc_pd(dx21,fscal,fix2);
1204 fiy2 = _mm_macc_pd(dy21,fscal,fiy2);
1205 fiz2 = _mm_macc_pd(dz21,fscal,fiz2);
1207 fjx1 = _mm_macc_pd(dx21,fscal,fjx1);
1208 fjy1 = _mm_macc_pd(dy21,fscal,fjy1);
1209 fjz1 = _mm_macc_pd(dz21,fscal,fjz1);
1211 /**************************
1212 * CALCULATE INTERACTIONS *
1213 **************************/
1215 /* COULOMB ELECTROSTATICS */
1216 velec = _mm_mul_pd(qq22,rinv22);
1217 felec = _mm_mul_pd(velec,rinvsq22);
1221 /* Update vectorial force */
1222 fix2 = _mm_macc_pd(dx22,fscal,fix2);
1223 fiy2 = _mm_macc_pd(dy22,fscal,fiy2);
1224 fiz2 = _mm_macc_pd(dz22,fscal,fiz2);
1226 fjx2 = _mm_macc_pd(dx22,fscal,fjx2);
1227 fjy2 = _mm_macc_pd(dy22,fscal,fjy2);
1228 fjz2 = _mm_macc_pd(dz22,fscal,fjz2);
1230 gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1232 /* Inner loop uses 277 flops */
1235 if(jidx<j_index_end)
1239 j_coord_offsetA = DIM*jnrA;
1241 /* load j atom coordinates */
1242 gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
1243 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1245 /* Calculate displacement vector */
1246 dx00 = _mm_sub_pd(ix0,jx0);
1247 dy00 = _mm_sub_pd(iy0,jy0);
1248 dz00 = _mm_sub_pd(iz0,jz0);
1249 dx01 = _mm_sub_pd(ix0,jx1);
1250 dy01 = _mm_sub_pd(iy0,jy1);
1251 dz01 = _mm_sub_pd(iz0,jz1);
1252 dx02 = _mm_sub_pd(ix0,jx2);
1253 dy02 = _mm_sub_pd(iy0,jy2);
1254 dz02 = _mm_sub_pd(iz0,jz2);
1255 dx10 = _mm_sub_pd(ix1,jx0);
1256 dy10 = _mm_sub_pd(iy1,jy0);
1257 dz10 = _mm_sub_pd(iz1,jz0);
1258 dx11 = _mm_sub_pd(ix1,jx1);
1259 dy11 = _mm_sub_pd(iy1,jy1);
1260 dz11 = _mm_sub_pd(iz1,jz1);
1261 dx12 = _mm_sub_pd(ix1,jx2);
1262 dy12 = _mm_sub_pd(iy1,jy2);
1263 dz12 = _mm_sub_pd(iz1,jz2);
1264 dx20 = _mm_sub_pd(ix2,jx0);
1265 dy20 = _mm_sub_pd(iy2,jy0);
1266 dz20 = _mm_sub_pd(iz2,jz0);
1267 dx21 = _mm_sub_pd(ix2,jx1);
1268 dy21 = _mm_sub_pd(iy2,jy1);
1269 dz21 = _mm_sub_pd(iz2,jz1);
1270 dx22 = _mm_sub_pd(ix2,jx2);
1271 dy22 = _mm_sub_pd(iy2,jy2);
1272 dz22 = _mm_sub_pd(iz2,jz2);
1274 /* Calculate squared distance and things based on it */
1275 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
1276 rsq01 = gmx_mm_calc_rsq_pd(dx01,dy01,dz01);
1277 rsq02 = gmx_mm_calc_rsq_pd(dx02,dy02,dz02);
1278 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
1279 rsq11 = gmx_mm_calc_rsq_pd(dx11,dy11,dz11);
1280 rsq12 = gmx_mm_calc_rsq_pd(dx12,dy12,dz12);
1281 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
1282 rsq21 = gmx_mm_calc_rsq_pd(dx21,dy21,dz21);
1283 rsq22 = gmx_mm_calc_rsq_pd(dx22,dy22,dz22);
1285 rinv00 = avx128fma_invsqrt_d(rsq00);
1286 rinv01 = avx128fma_invsqrt_d(rsq01);
1287 rinv02 = avx128fma_invsqrt_d(rsq02);
1288 rinv10 = avx128fma_invsqrt_d(rsq10);
1289 rinv11 = avx128fma_invsqrt_d(rsq11);
1290 rinv12 = avx128fma_invsqrt_d(rsq12);
1291 rinv20 = avx128fma_invsqrt_d(rsq20);
1292 rinv21 = avx128fma_invsqrt_d(rsq21);
1293 rinv22 = avx128fma_invsqrt_d(rsq22);
1295 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
1296 rinvsq01 = _mm_mul_pd(rinv01,rinv01);
1297 rinvsq02 = _mm_mul_pd(rinv02,rinv02);
1298 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
1299 rinvsq11 = _mm_mul_pd(rinv11,rinv11);
1300 rinvsq12 = _mm_mul_pd(rinv12,rinv12);
1301 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
1302 rinvsq21 = _mm_mul_pd(rinv21,rinv21);
1303 rinvsq22 = _mm_mul_pd(rinv22,rinv22);
1305 fjx0 = _mm_setzero_pd();
1306 fjy0 = _mm_setzero_pd();
1307 fjz0 = _mm_setzero_pd();
1308 fjx1 = _mm_setzero_pd();
1309 fjy1 = _mm_setzero_pd();
1310 fjz1 = _mm_setzero_pd();
1311 fjx2 = _mm_setzero_pd();
1312 fjy2 = _mm_setzero_pd();
1313 fjz2 = _mm_setzero_pd();
1315 /**************************
1316 * CALCULATE INTERACTIONS *
1317 **************************/
1319 /* COULOMB ELECTROSTATICS */
1320 velec = _mm_mul_pd(qq00,rinv00);
1321 felec = _mm_mul_pd(velec,rinvsq00);
1323 /* LENNARD-JONES DISPERSION/REPULSION */
1325 rinvsix = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
1326 fvdw = _mm_mul_pd(_mm_msub_pd(c12_00,rinvsix,c6_00),_mm_mul_pd(rinvsix,rinvsq00));
1328 fscal = _mm_add_pd(felec,fvdw);
1330 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1332 /* Update vectorial force */
1333 fix0 = _mm_macc_pd(dx00,fscal,fix0);
1334 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
1335 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
1337 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
1338 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
1339 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
1341 /**************************
1342 * CALCULATE INTERACTIONS *
1343 **************************/
1345 /* COULOMB ELECTROSTATICS */
1346 velec = _mm_mul_pd(qq01,rinv01);
1347 felec = _mm_mul_pd(velec,rinvsq01);
1351 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1353 /* Update vectorial force */
1354 fix0 = _mm_macc_pd(dx01,fscal,fix0);
1355 fiy0 = _mm_macc_pd(dy01,fscal,fiy0);
1356 fiz0 = _mm_macc_pd(dz01,fscal,fiz0);
1358 fjx1 = _mm_macc_pd(dx01,fscal,fjx1);
1359 fjy1 = _mm_macc_pd(dy01,fscal,fjy1);
1360 fjz1 = _mm_macc_pd(dz01,fscal,fjz1);
1362 /**************************
1363 * CALCULATE INTERACTIONS *
1364 **************************/
1366 /* COULOMB ELECTROSTATICS */
1367 velec = _mm_mul_pd(qq02,rinv02);
1368 felec = _mm_mul_pd(velec,rinvsq02);
1372 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1374 /* Update vectorial force */
1375 fix0 = _mm_macc_pd(dx02,fscal,fix0);
1376 fiy0 = _mm_macc_pd(dy02,fscal,fiy0);
1377 fiz0 = _mm_macc_pd(dz02,fscal,fiz0);
1379 fjx2 = _mm_macc_pd(dx02,fscal,fjx2);
1380 fjy2 = _mm_macc_pd(dy02,fscal,fjy2);
1381 fjz2 = _mm_macc_pd(dz02,fscal,fjz2);
1383 /**************************
1384 * CALCULATE INTERACTIONS *
1385 **************************/
1387 /* COULOMB ELECTROSTATICS */
1388 velec = _mm_mul_pd(qq10,rinv10);
1389 felec = _mm_mul_pd(velec,rinvsq10);
1393 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1395 /* Update vectorial force */
1396 fix1 = _mm_macc_pd(dx10,fscal,fix1);
1397 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
1398 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
1400 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
1401 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
1402 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
1404 /**************************
1405 * CALCULATE INTERACTIONS *
1406 **************************/
1408 /* COULOMB ELECTROSTATICS */
1409 velec = _mm_mul_pd(qq11,rinv11);
1410 felec = _mm_mul_pd(velec,rinvsq11);
1414 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1416 /* Update vectorial force */
1417 fix1 = _mm_macc_pd(dx11,fscal,fix1);
1418 fiy1 = _mm_macc_pd(dy11,fscal,fiy1);
1419 fiz1 = _mm_macc_pd(dz11,fscal,fiz1);
1421 fjx1 = _mm_macc_pd(dx11,fscal,fjx1);
1422 fjy1 = _mm_macc_pd(dy11,fscal,fjy1);
1423 fjz1 = _mm_macc_pd(dz11,fscal,fjz1);
1425 /**************************
1426 * CALCULATE INTERACTIONS *
1427 **************************/
1429 /* COULOMB ELECTROSTATICS */
1430 velec = _mm_mul_pd(qq12,rinv12);
1431 felec = _mm_mul_pd(velec,rinvsq12);
1435 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1437 /* Update vectorial force */
1438 fix1 = _mm_macc_pd(dx12,fscal,fix1);
1439 fiy1 = _mm_macc_pd(dy12,fscal,fiy1);
1440 fiz1 = _mm_macc_pd(dz12,fscal,fiz1);
1442 fjx2 = _mm_macc_pd(dx12,fscal,fjx2);
1443 fjy2 = _mm_macc_pd(dy12,fscal,fjy2);
1444 fjz2 = _mm_macc_pd(dz12,fscal,fjz2);
1446 /**************************
1447 * CALCULATE INTERACTIONS *
1448 **************************/
1450 /* COULOMB ELECTROSTATICS */
1451 velec = _mm_mul_pd(qq20,rinv20);
1452 felec = _mm_mul_pd(velec,rinvsq20);
1456 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1458 /* Update vectorial force */
1459 fix2 = _mm_macc_pd(dx20,fscal,fix2);
1460 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
1461 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
1463 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
1464 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
1465 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
1467 /**************************
1468 * CALCULATE INTERACTIONS *
1469 **************************/
1471 /* COULOMB ELECTROSTATICS */
1472 velec = _mm_mul_pd(qq21,rinv21);
1473 felec = _mm_mul_pd(velec,rinvsq21);
1477 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1479 /* Update vectorial force */
1480 fix2 = _mm_macc_pd(dx21,fscal,fix2);
1481 fiy2 = _mm_macc_pd(dy21,fscal,fiy2);
1482 fiz2 = _mm_macc_pd(dz21,fscal,fiz2);
1484 fjx1 = _mm_macc_pd(dx21,fscal,fjx1);
1485 fjy1 = _mm_macc_pd(dy21,fscal,fjy1);
1486 fjz1 = _mm_macc_pd(dz21,fscal,fjz1);
1488 /**************************
1489 * CALCULATE INTERACTIONS *
1490 **************************/
1492 /* COULOMB ELECTROSTATICS */
1493 velec = _mm_mul_pd(qq22,rinv22);
1494 felec = _mm_mul_pd(velec,rinvsq22);
1498 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1500 /* Update vectorial force */
1501 fix2 = _mm_macc_pd(dx22,fscal,fix2);
1502 fiy2 = _mm_macc_pd(dy22,fscal,fiy2);
1503 fiz2 = _mm_macc_pd(dz22,fscal,fiz2);
1505 fjx2 = _mm_macc_pd(dx22,fscal,fjx2);
1506 fjy2 = _mm_macc_pd(dy22,fscal,fjy2);
1507 fjz2 = _mm_macc_pd(dz22,fscal,fjz2);
1509 gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1511 /* Inner loop uses 277 flops */
1514 /* End of innermost loop */
1516 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1517 f+i_coord_offset,fshift+i_shift_offset);
1519 /* Increment number of inner iterations */
1520 inneriter += j_index_end - j_index_start;
1522 /* Outer loop uses 18 flops */
1525 /* Increment number of outer iterations */
1528 /* Update outer/inner flops */
1530 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*277);