2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS avx_128_fma_double kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/legacyheaders/types/simple.h"
46 #include "gromacs/math/vec.h"
47 #include "gromacs/legacyheaders/nrnb.h"
49 #include "gromacs/simd/math_x86_avx_128_fma_double.h"
50 #include "kernelutil_x86_avx_128_fma_double.h"
53 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_VF_avx_128_fma_double
54 * Electrostatics interaction: Coulomb
55 * VdW interaction: CubicSplineTable
56 * Geometry: Water3-Particle
57 * Calculate force/pot: PotentialAndForce
60 nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_VF_avx_128_fma_double
61 (t_nblist * gmx_restrict nlist,
62 rvec * gmx_restrict xx,
63 rvec * gmx_restrict ff,
64 t_forcerec * gmx_restrict fr,
65 t_mdatoms * gmx_restrict mdatoms,
66 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
67 t_nrnb * gmx_restrict nrnb)
69 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
70 * just 0 for non-waters.
71 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
72 * jnr indices corresponding to data put in the four positions in the SIMD register.
74 int i_shift_offset,i_coord_offset,outeriter,inneriter;
75 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
77 int j_coord_offsetA,j_coord_offsetB;
78 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
80 real *shiftvec,*fshift,*x,*f;
81 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 int vdwjidx0A,vdwjidx0B;
89 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
91 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
92 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
93 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
96 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
99 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
100 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
102 __m128i ifour = _mm_set1_epi32(4);
103 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
105 __m128d dummy_mask,cutoff_mask;
106 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
107 __m128d one = _mm_set1_pd(1.0);
108 __m128d two = _mm_set1_pd(2.0);
114 jindex = nlist->jindex;
116 shiftidx = nlist->shift;
118 shiftvec = fr->shift_vec[0];
119 fshift = fr->fshift[0];
120 facel = _mm_set1_pd(fr->epsfac);
121 charge = mdatoms->chargeA;
122 nvdwtype = fr->ntype;
124 vdwtype = mdatoms->typeA;
126 vftab = kernel_data->table_vdw->data;
127 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
129 /* Setup water-specific parameters */
130 inr = nlist->iinr[0];
131 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
132 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
133 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
134 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
136 /* Avoid stupid compiler warnings */
144 /* Start outer loop over neighborlists */
145 for(iidx=0; iidx<nri; iidx++)
147 /* Load shift vector for this list */
148 i_shift_offset = DIM*shiftidx[iidx];
150 /* Load limits for loop over neighbors */
151 j_index_start = jindex[iidx];
152 j_index_end = jindex[iidx+1];
154 /* Get outer coordinate index */
156 i_coord_offset = DIM*inr;
158 /* Load i particle coords and add shift vector */
159 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
160 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
162 fix0 = _mm_setzero_pd();
163 fiy0 = _mm_setzero_pd();
164 fiz0 = _mm_setzero_pd();
165 fix1 = _mm_setzero_pd();
166 fiy1 = _mm_setzero_pd();
167 fiz1 = _mm_setzero_pd();
168 fix2 = _mm_setzero_pd();
169 fiy2 = _mm_setzero_pd();
170 fiz2 = _mm_setzero_pd();
172 /* Reset potential sums */
173 velecsum = _mm_setzero_pd();
174 vvdwsum = _mm_setzero_pd();
176 /* Start inner kernel loop */
177 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
180 /* Get j neighbor index, and coordinate index */
183 j_coord_offsetA = DIM*jnrA;
184 j_coord_offsetB = DIM*jnrB;
186 /* load j atom coordinates */
187 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
190 /* Calculate displacement vector */
191 dx00 = _mm_sub_pd(ix0,jx0);
192 dy00 = _mm_sub_pd(iy0,jy0);
193 dz00 = _mm_sub_pd(iz0,jz0);
194 dx10 = _mm_sub_pd(ix1,jx0);
195 dy10 = _mm_sub_pd(iy1,jy0);
196 dz10 = _mm_sub_pd(iz1,jz0);
197 dx20 = _mm_sub_pd(ix2,jx0);
198 dy20 = _mm_sub_pd(iy2,jy0);
199 dz20 = _mm_sub_pd(iz2,jz0);
201 /* Calculate squared distance and things based on it */
202 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
203 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
204 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
206 rinv00 = gmx_mm_invsqrt_pd(rsq00);
207 rinv10 = gmx_mm_invsqrt_pd(rsq10);
208 rinv20 = gmx_mm_invsqrt_pd(rsq20);
210 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
211 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
212 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
214 /* Load parameters for j particles */
215 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
216 vdwjidx0A = 2*vdwtype[jnrA+0];
217 vdwjidx0B = 2*vdwtype[jnrB+0];
219 fjx0 = _mm_setzero_pd();
220 fjy0 = _mm_setzero_pd();
221 fjz0 = _mm_setzero_pd();
223 /**************************
224 * CALCULATE INTERACTIONS *
225 **************************/
227 r00 = _mm_mul_pd(rsq00,rinv00);
229 /* Compute parameters for interactions between i and j atoms */
230 qq00 = _mm_mul_pd(iq0,jq0);
231 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
232 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
234 /* Calculate table index by multiplying r with table scale and truncate to integer */
235 rt = _mm_mul_pd(r00,vftabscale);
236 vfitab = _mm_cvttpd_epi32(rt);
238 vfeps = _mm_frcz_pd(rt);
240 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
242 twovfeps = _mm_add_pd(vfeps,vfeps);
243 vfitab = _mm_slli_epi32(vfitab,3);
245 /* COULOMB ELECTROSTATICS */
246 velec = _mm_mul_pd(qq00,rinv00);
247 felec = _mm_mul_pd(velec,rinvsq00);
249 /* CUBIC SPLINE TABLE DISPERSION */
250 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
251 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
252 GMX_MM_TRANSPOSE2_PD(Y,F);
253 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
254 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
255 GMX_MM_TRANSPOSE2_PD(G,H);
256 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
257 VV = _mm_macc_pd(vfeps,Fp,Y);
258 vvdw6 = _mm_mul_pd(c6_00,VV);
259 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
260 fvdw6 = _mm_mul_pd(c6_00,FF);
262 /* CUBIC SPLINE TABLE REPULSION */
263 vfitab = _mm_add_epi32(vfitab,ifour);
264 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
265 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
266 GMX_MM_TRANSPOSE2_PD(Y,F);
267 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
268 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
269 GMX_MM_TRANSPOSE2_PD(G,H);
270 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
271 VV = _mm_macc_pd(vfeps,Fp,Y);
272 vvdw12 = _mm_mul_pd(c12_00,VV);
273 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
274 fvdw12 = _mm_mul_pd(c12_00,FF);
275 vvdw = _mm_add_pd(vvdw12,vvdw6);
276 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
278 /* Update potential sum for this i atom from the interaction with this j atom. */
279 velecsum = _mm_add_pd(velecsum,velec);
280 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
282 fscal = _mm_add_pd(felec,fvdw);
284 /* Update vectorial force */
285 fix0 = _mm_macc_pd(dx00,fscal,fix0);
286 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
287 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
289 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
290 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
291 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
293 /**************************
294 * CALCULATE INTERACTIONS *
295 **************************/
297 /* Compute parameters for interactions between i and j atoms */
298 qq10 = _mm_mul_pd(iq1,jq0);
300 /* COULOMB ELECTROSTATICS */
301 velec = _mm_mul_pd(qq10,rinv10);
302 felec = _mm_mul_pd(velec,rinvsq10);
304 /* Update potential sum for this i atom from the interaction with this j atom. */
305 velecsum = _mm_add_pd(velecsum,velec);
309 /* Update vectorial force */
310 fix1 = _mm_macc_pd(dx10,fscal,fix1);
311 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
312 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
314 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
315 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
316 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
318 /**************************
319 * CALCULATE INTERACTIONS *
320 **************************/
322 /* Compute parameters for interactions between i and j atoms */
323 qq20 = _mm_mul_pd(iq2,jq0);
325 /* COULOMB ELECTROSTATICS */
326 velec = _mm_mul_pd(qq20,rinv20);
327 felec = _mm_mul_pd(velec,rinvsq20);
329 /* Update potential sum for this i atom from the interaction with this j atom. */
330 velecsum = _mm_add_pd(velecsum,velec);
334 /* Update vectorial force */
335 fix2 = _mm_macc_pd(dx20,fscal,fix2);
336 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
337 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
339 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
340 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
341 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
343 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
345 /* Inner loop uses 131 flops */
352 j_coord_offsetA = DIM*jnrA;
354 /* load j atom coordinates */
355 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
358 /* Calculate displacement vector */
359 dx00 = _mm_sub_pd(ix0,jx0);
360 dy00 = _mm_sub_pd(iy0,jy0);
361 dz00 = _mm_sub_pd(iz0,jz0);
362 dx10 = _mm_sub_pd(ix1,jx0);
363 dy10 = _mm_sub_pd(iy1,jy0);
364 dz10 = _mm_sub_pd(iz1,jz0);
365 dx20 = _mm_sub_pd(ix2,jx0);
366 dy20 = _mm_sub_pd(iy2,jy0);
367 dz20 = _mm_sub_pd(iz2,jz0);
369 /* Calculate squared distance and things based on it */
370 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
371 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
372 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
374 rinv00 = gmx_mm_invsqrt_pd(rsq00);
375 rinv10 = gmx_mm_invsqrt_pd(rsq10);
376 rinv20 = gmx_mm_invsqrt_pd(rsq20);
378 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
379 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
380 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
382 /* Load parameters for j particles */
383 jq0 = _mm_load_sd(charge+jnrA+0);
384 vdwjidx0A = 2*vdwtype[jnrA+0];
386 fjx0 = _mm_setzero_pd();
387 fjy0 = _mm_setzero_pd();
388 fjz0 = _mm_setzero_pd();
390 /**************************
391 * CALCULATE INTERACTIONS *
392 **************************/
394 r00 = _mm_mul_pd(rsq00,rinv00);
396 /* Compute parameters for interactions between i and j atoms */
397 qq00 = _mm_mul_pd(iq0,jq0);
398 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
400 /* Calculate table index by multiplying r with table scale and truncate to integer */
401 rt = _mm_mul_pd(r00,vftabscale);
402 vfitab = _mm_cvttpd_epi32(rt);
404 vfeps = _mm_frcz_pd(rt);
406 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
408 twovfeps = _mm_add_pd(vfeps,vfeps);
409 vfitab = _mm_slli_epi32(vfitab,3);
411 /* COULOMB ELECTROSTATICS */
412 velec = _mm_mul_pd(qq00,rinv00);
413 felec = _mm_mul_pd(velec,rinvsq00);
415 /* CUBIC SPLINE TABLE DISPERSION */
416 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
417 F = _mm_setzero_pd();
418 GMX_MM_TRANSPOSE2_PD(Y,F);
419 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
420 H = _mm_setzero_pd();
421 GMX_MM_TRANSPOSE2_PD(G,H);
422 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
423 VV = _mm_macc_pd(vfeps,Fp,Y);
424 vvdw6 = _mm_mul_pd(c6_00,VV);
425 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
426 fvdw6 = _mm_mul_pd(c6_00,FF);
428 /* CUBIC SPLINE TABLE REPULSION */
429 vfitab = _mm_add_epi32(vfitab,ifour);
430 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
431 F = _mm_setzero_pd();
432 GMX_MM_TRANSPOSE2_PD(Y,F);
433 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
434 H = _mm_setzero_pd();
435 GMX_MM_TRANSPOSE2_PD(G,H);
436 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
437 VV = _mm_macc_pd(vfeps,Fp,Y);
438 vvdw12 = _mm_mul_pd(c12_00,VV);
439 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
440 fvdw12 = _mm_mul_pd(c12_00,FF);
441 vvdw = _mm_add_pd(vvdw12,vvdw6);
442 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
444 /* Update potential sum for this i atom from the interaction with this j atom. */
445 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
446 velecsum = _mm_add_pd(velecsum,velec);
447 vvdw = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
448 vvdwsum = _mm_add_pd(vvdwsum,vvdw);
450 fscal = _mm_add_pd(felec,fvdw);
452 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
454 /* Update vectorial force */
455 fix0 = _mm_macc_pd(dx00,fscal,fix0);
456 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
457 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
459 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
460 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
461 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
463 /**************************
464 * CALCULATE INTERACTIONS *
465 **************************/
467 /* Compute parameters for interactions between i and j atoms */
468 qq10 = _mm_mul_pd(iq1,jq0);
470 /* COULOMB ELECTROSTATICS */
471 velec = _mm_mul_pd(qq10,rinv10);
472 felec = _mm_mul_pd(velec,rinvsq10);
474 /* Update potential sum for this i atom from the interaction with this j atom. */
475 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
476 velecsum = _mm_add_pd(velecsum,velec);
480 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
482 /* Update vectorial force */
483 fix1 = _mm_macc_pd(dx10,fscal,fix1);
484 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
485 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
487 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
488 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
489 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
491 /**************************
492 * CALCULATE INTERACTIONS *
493 **************************/
495 /* Compute parameters for interactions between i and j atoms */
496 qq20 = _mm_mul_pd(iq2,jq0);
498 /* COULOMB ELECTROSTATICS */
499 velec = _mm_mul_pd(qq20,rinv20);
500 felec = _mm_mul_pd(velec,rinvsq20);
502 /* Update potential sum for this i atom from the interaction with this j atom. */
503 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
504 velecsum = _mm_add_pd(velecsum,velec);
508 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
510 /* Update vectorial force */
511 fix2 = _mm_macc_pd(dx20,fscal,fix2);
512 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
513 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
515 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
516 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
517 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
519 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
521 /* Inner loop uses 131 flops */
524 /* End of innermost loop */
526 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
527 f+i_coord_offset,fshift+i_shift_offset);
530 /* Update potential energies */
531 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
532 gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
534 /* Increment number of inner iterations */
535 inneriter += j_index_end - j_index_start;
537 /* Outer loop uses 20 flops */
540 /* Increment number of outer iterations */
543 /* Update outer/inner flops */
545 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*131);
548 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_F_avx_128_fma_double
549 * Electrostatics interaction: Coulomb
550 * VdW interaction: CubicSplineTable
551 * Geometry: Water3-Particle
552 * Calculate force/pot: Force
555 nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_F_avx_128_fma_double
556 (t_nblist * gmx_restrict nlist,
557 rvec * gmx_restrict xx,
558 rvec * gmx_restrict ff,
559 t_forcerec * gmx_restrict fr,
560 t_mdatoms * gmx_restrict mdatoms,
561 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
562 t_nrnb * gmx_restrict nrnb)
564 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
565 * just 0 for non-waters.
566 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
567 * jnr indices corresponding to data put in the four positions in the SIMD register.
569 int i_shift_offset,i_coord_offset,outeriter,inneriter;
570 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
572 int j_coord_offsetA,j_coord_offsetB;
573 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
575 real *shiftvec,*fshift,*x,*f;
576 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
578 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
580 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
582 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
583 int vdwjidx0A,vdwjidx0B;
584 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
585 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
586 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
587 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
588 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
591 __m128d rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
594 __m128d one_sixth = _mm_set1_pd(1.0/6.0);
595 __m128d one_twelfth = _mm_set1_pd(1.0/12.0);
597 __m128i ifour = _mm_set1_epi32(4);
598 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
600 __m128d dummy_mask,cutoff_mask;
601 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
602 __m128d one = _mm_set1_pd(1.0);
603 __m128d two = _mm_set1_pd(2.0);
609 jindex = nlist->jindex;
611 shiftidx = nlist->shift;
613 shiftvec = fr->shift_vec[0];
614 fshift = fr->fshift[0];
615 facel = _mm_set1_pd(fr->epsfac);
616 charge = mdatoms->chargeA;
617 nvdwtype = fr->ntype;
619 vdwtype = mdatoms->typeA;
621 vftab = kernel_data->table_vdw->data;
622 vftabscale = _mm_set1_pd(kernel_data->table_vdw->scale);
624 /* Setup water-specific parameters */
625 inr = nlist->iinr[0];
626 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
627 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
628 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
629 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
631 /* Avoid stupid compiler warnings */
639 /* Start outer loop over neighborlists */
640 for(iidx=0; iidx<nri; iidx++)
642 /* Load shift vector for this list */
643 i_shift_offset = DIM*shiftidx[iidx];
645 /* Load limits for loop over neighbors */
646 j_index_start = jindex[iidx];
647 j_index_end = jindex[iidx+1];
649 /* Get outer coordinate index */
651 i_coord_offset = DIM*inr;
653 /* Load i particle coords and add shift vector */
654 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
655 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
657 fix0 = _mm_setzero_pd();
658 fiy0 = _mm_setzero_pd();
659 fiz0 = _mm_setzero_pd();
660 fix1 = _mm_setzero_pd();
661 fiy1 = _mm_setzero_pd();
662 fiz1 = _mm_setzero_pd();
663 fix2 = _mm_setzero_pd();
664 fiy2 = _mm_setzero_pd();
665 fiz2 = _mm_setzero_pd();
667 /* Start inner kernel loop */
668 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
671 /* Get j neighbor index, and coordinate index */
674 j_coord_offsetA = DIM*jnrA;
675 j_coord_offsetB = DIM*jnrB;
677 /* load j atom coordinates */
678 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
681 /* Calculate displacement vector */
682 dx00 = _mm_sub_pd(ix0,jx0);
683 dy00 = _mm_sub_pd(iy0,jy0);
684 dz00 = _mm_sub_pd(iz0,jz0);
685 dx10 = _mm_sub_pd(ix1,jx0);
686 dy10 = _mm_sub_pd(iy1,jy0);
687 dz10 = _mm_sub_pd(iz1,jz0);
688 dx20 = _mm_sub_pd(ix2,jx0);
689 dy20 = _mm_sub_pd(iy2,jy0);
690 dz20 = _mm_sub_pd(iz2,jz0);
692 /* Calculate squared distance and things based on it */
693 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
694 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
695 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
697 rinv00 = gmx_mm_invsqrt_pd(rsq00);
698 rinv10 = gmx_mm_invsqrt_pd(rsq10);
699 rinv20 = gmx_mm_invsqrt_pd(rsq20);
701 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
702 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
703 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
705 /* Load parameters for j particles */
706 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
707 vdwjidx0A = 2*vdwtype[jnrA+0];
708 vdwjidx0B = 2*vdwtype[jnrB+0];
710 fjx0 = _mm_setzero_pd();
711 fjy0 = _mm_setzero_pd();
712 fjz0 = _mm_setzero_pd();
714 /**************************
715 * CALCULATE INTERACTIONS *
716 **************************/
718 r00 = _mm_mul_pd(rsq00,rinv00);
720 /* Compute parameters for interactions between i and j atoms */
721 qq00 = _mm_mul_pd(iq0,jq0);
722 gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
723 vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
725 /* Calculate table index by multiplying r with table scale and truncate to integer */
726 rt = _mm_mul_pd(r00,vftabscale);
727 vfitab = _mm_cvttpd_epi32(rt);
729 vfeps = _mm_frcz_pd(rt);
731 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
733 twovfeps = _mm_add_pd(vfeps,vfeps);
734 vfitab = _mm_slli_epi32(vfitab,3);
736 /* COULOMB ELECTROSTATICS */
737 velec = _mm_mul_pd(qq00,rinv00);
738 felec = _mm_mul_pd(velec,rinvsq00);
740 /* CUBIC SPLINE TABLE DISPERSION */
741 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
742 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
743 GMX_MM_TRANSPOSE2_PD(Y,F);
744 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
745 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
746 GMX_MM_TRANSPOSE2_PD(G,H);
747 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
748 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
749 fvdw6 = _mm_mul_pd(c6_00,FF);
751 /* CUBIC SPLINE TABLE REPULSION */
752 vfitab = _mm_add_epi32(vfitab,ifour);
753 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
754 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
755 GMX_MM_TRANSPOSE2_PD(Y,F);
756 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
757 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
758 GMX_MM_TRANSPOSE2_PD(G,H);
759 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
760 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
761 fvdw12 = _mm_mul_pd(c12_00,FF);
762 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
764 fscal = _mm_add_pd(felec,fvdw);
766 /* Update vectorial force */
767 fix0 = _mm_macc_pd(dx00,fscal,fix0);
768 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
769 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
771 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
772 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
773 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
775 /**************************
776 * CALCULATE INTERACTIONS *
777 **************************/
779 /* Compute parameters for interactions between i and j atoms */
780 qq10 = _mm_mul_pd(iq1,jq0);
782 /* COULOMB ELECTROSTATICS */
783 velec = _mm_mul_pd(qq10,rinv10);
784 felec = _mm_mul_pd(velec,rinvsq10);
788 /* Update vectorial force */
789 fix1 = _mm_macc_pd(dx10,fscal,fix1);
790 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
791 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
793 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
794 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
795 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
797 /**************************
798 * CALCULATE INTERACTIONS *
799 **************************/
801 /* Compute parameters for interactions between i and j atoms */
802 qq20 = _mm_mul_pd(iq2,jq0);
804 /* COULOMB ELECTROSTATICS */
805 velec = _mm_mul_pd(qq20,rinv20);
806 felec = _mm_mul_pd(velec,rinvsq20);
810 /* Update vectorial force */
811 fix2 = _mm_macc_pd(dx20,fscal,fix2);
812 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
813 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
815 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
816 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
817 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
819 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
821 /* Inner loop uses 120 flops */
828 j_coord_offsetA = DIM*jnrA;
830 /* load j atom coordinates */
831 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
834 /* Calculate displacement vector */
835 dx00 = _mm_sub_pd(ix0,jx0);
836 dy00 = _mm_sub_pd(iy0,jy0);
837 dz00 = _mm_sub_pd(iz0,jz0);
838 dx10 = _mm_sub_pd(ix1,jx0);
839 dy10 = _mm_sub_pd(iy1,jy0);
840 dz10 = _mm_sub_pd(iz1,jz0);
841 dx20 = _mm_sub_pd(ix2,jx0);
842 dy20 = _mm_sub_pd(iy2,jy0);
843 dz20 = _mm_sub_pd(iz2,jz0);
845 /* Calculate squared distance and things based on it */
846 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
847 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
848 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
850 rinv00 = gmx_mm_invsqrt_pd(rsq00);
851 rinv10 = gmx_mm_invsqrt_pd(rsq10);
852 rinv20 = gmx_mm_invsqrt_pd(rsq20);
854 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
855 rinvsq10 = _mm_mul_pd(rinv10,rinv10);
856 rinvsq20 = _mm_mul_pd(rinv20,rinv20);
858 /* Load parameters for j particles */
859 jq0 = _mm_load_sd(charge+jnrA+0);
860 vdwjidx0A = 2*vdwtype[jnrA+0];
862 fjx0 = _mm_setzero_pd();
863 fjy0 = _mm_setzero_pd();
864 fjz0 = _mm_setzero_pd();
866 /**************************
867 * CALCULATE INTERACTIONS *
868 **************************/
870 r00 = _mm_mul_pd(rsq00,rinv00);
872 /* Compute parameters for interactions between i and j atoms */
873 qq00 = _mm_mul_pd(iq0,jq0);
874 gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
876 /* Calculate table index by multiplying r with table scale and truncate to integer */
877 rt = _mm_mul_pd(r00,vftabscale);
878 vfitab = _mm_cvttpd_epi32(rt);
880 vfeps = _mm_frcz_pd(rt);
882 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
884 twovfeps = _mm_add_pd(vfeps,vfeps);
885 vfitab = _mm_slli_epi32(vfitab,3);
887 /* COULOMB ELECTROSTATICS */
888 velec = _mm_mul_pd(qq00,rinv00);
889 felec = _mm_mul_pd(velec,rinvsq00);
891 /* CUBIC SPLINE TABLE DISPERSION */
892 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
893 F = _mm_setzero_pd();
894 GMX_MM_TRANSPOSE2_PD(Y,F);
895 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
896 H = _mm_setzero_pd();
897 GMX_MM_TRANSPOSE2_PD(G,H);
898 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
899 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
900 fvdw6 = _mm_mul_pd(c6_00,FF);
902 /* CUBIC SPLINE TABLE REPULSION */
903 vfitab = _mm_add_epi32(vfitab,ifour);
904 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
905 F = _mm_setzero_pd();
906 GMX_MM_TRANSPOSE2_PD(Y,F);
907 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
908 H = _mm_setzero_pd();
909 GMX_MM_TRANSPOSE2_PD(G,H);
910 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(H,vfeps,G),F);
911 FF = _mm_macc_pd(vfeps,_mm_macc_pd(twovfeps,H,G),Fp);
912 fvdw12 = _mm_mul_pd(c12_00,FF);
913 fvdw = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv00)));
915 fscal = _mm_add_pd(felec,fvdw);
917 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
919 /* Update vectorial force */
920 fix0 = _mm_macc_pd(dx00,fscal,fix0);
921 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
922 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
924 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
925 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
926 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
928 /**************************
929 * CALCULATE INTERACTIONS *
930 **************************/
932 /* Compute parameters for interactions between i and j atoms */
933 qq10 = _mm_mul_pd(iq1,jq0);
935 /* COULOMB ELECTROSTATICS */
936 velec = _mm_mul_pd(qq10,rinv10);
937 felec = _mm_mul_pd(velec,rinvsq10);
941 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
943 /* Update vectorial force */
944 fix1 = _mm_macc_pd(dx10,fscal,fix1);
945 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
946 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
948 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
949 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
950 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
952 /**************************
953 * CALCULATE INTERACTIONS *
954 **************************/
956 /* Compute parameters for interactions between i and j atoms */
957 qq20 = _mm_mul_pd(iq2,jq0);
959 /* COULOMB ELECTROSTATICS */
960 velec = _mm_mul_pd(qq20,rinv20);
961 felec = _mm_mul_pd(velec,rinvsq20);
965 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
967 /* Update vectorial force */
968 fix2 = _mm_macc_pd(dx20,fscal,fix2);
969 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
970 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
972 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
973 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
974 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
976 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
978 /* Inner loop uses 120 flops */
981 /* End of innermost loop */
983 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
984 f+i_coord_offset,fshift+i_shift_offset);
986 /* Increment number of inner iterations */
987 inneriter += j_index_end - j_index_start;
989 /* Outer loop uses 18 flops */
992 /* Increment number of outer iterations */
995 /* Update outer/inner flops */
997 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*120);