2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS avx_128_fma_double kernel generator.
42 #include "../nb_kernel.h"
43 #include "types/simple.h"
44 #include "gromacs/math/vec.h"
47 #include "gromacs/simd/math_x86_avx_128_fma_double.h"
48 #include "kernelutil_x86_avx_128_fma_double.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwNone_GeomW3P1_VF_avx_128_fma_double
52 * Electrostatics interaction: CubicSplineTable
53 * VdW interaction: None
54 * Geometry: Water3-Particle
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecCSTab_VdwNone_GeomW3P1_VF_avx_128_fma_double
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
75 int j_coord_offsetA,j_coord_offsetB;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
81 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
83 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
85 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
86 int vdwjidx0A,vdwjidx0B;
87 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
88 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
89 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
90 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
91 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
94 __m128i ifour = _mm_set1_epi32(4);
95 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
97 __m128d dummy_mask,cutoff_mask;
98 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
99 __m128d one = _mm_set1_pd(1.0);
100 __m128d two = _mm_set1_pd(2.0);
106 jindex = nlist->jindex;
108 shiftidx = nlist->shift;
110 shiftvec = fr->shift_vec[0];
111 fshift = fr->fshift[0];
112 facel = _mm_set1_pd(fr->epsfac);
113 charge = mdatoms->chargeA;
115 vftab = kernel_data->table_elec->data;
116 vftabscale = _mm_set1_pd(kernel_data->table_elec->scale);
118 /* Setup water-specific parameters */
119 inr = nlist->iinr[0];
120 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
121 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
122 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
124 /* Avoid stupid compiler warnings */
132 /* Start outer loop over neighborlists */
133 for(iidx=0; iidx<nri; iidx++)
135 /* Load shift vector for this list */
136 i_shift_offset = DIM*shiftidx[iidx];
138 /* Load limits for loop over neighbors */
139 j_index_start = jindex[iidx];
140 j_index_end = jindex[iidx+1];
142 /* Get outer coordinate index */
144 i_coord_offset = DIM*inr;
146 /* Load i particle coords and add shift vector */
147 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
148 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
150 fix0 = _mm_setzero_pd();
151 fiy0 = _mm_setzero_pd();
152 fiz0 = _mm_setzero_pd();
153 fix1 = _mm_setzero_pd();
154 fiy1 = _mm_setzero_pd();
155 fiz1 = _mm_setzero_pd();
156 fix2 = _mm_setzero_pd();
157 fiy2 = _mm_setzero_pd();
158 fiz2 = _mm_setzero_pd();
160 /* Reset potential sums */
161 velecsum = _mm_setzero_pd();
163 /* Start inner kernel loop */
164 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
167 /* Get j neighbor index, and coordinate index */
170 j_coord_offsetA = DIM*jnrA;
171 j_coord_offsetB = DIM*jnrB;
173 /* load j atom coordinates */
174 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
177 /* Calculate displacement vector */
178 dx00 = _mm_sub_pd(ix0,jx0);
179 dy00 = _mm_sub_pd(iy0,jy0);
180 dz00 = _mm_sub_pd(iz0,jz0);
181 dx10 = _mm_sub_pd(ix1,jx0);
182 dy10 = _mm_sub_pd(iy1,jy0);
183 dz10 = _mm_sub_pd(iz1,jz0);
184 dx20 = _mm_sub_pd(ix2,jx0);
185 dy20 = _mm_sub_pd(iy2,jy0);
186 dz20 = _mm_sub_pd(iz2,jz0);
188 /* Calculate squared distance and things based on it */
189 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
190 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
191 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
193 rinv00 = gmx_mm_invsqrt_pd(rsq00);
194 rinv10 = gmx_mm_invsqrt_pd(rsq10);
195 rinv20 = gmx_mm_invsqrt_pd(rsq20);
197 /* Load parameters for j particles */
198 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
200 fjx0 = _mm_setzero_pd();
201 fjy0 = _mm_setzero_pd();
202 fjz0 = _mm_setzero_pd();
204 /**************************
205 * CALCULATE INTERACTIONS *
206 **************************/
208 r00 = _mm_mul_pd(rsq00,rinv00);
210 /* Compute parameters for interactions between i and j atoms */
211 qq00 = _mm_mul_pd(iq0,jq0);
213 /* Calculate table index by multiplying r with table scale and truncate to integer */
214 rt = _mm_mul_pd(r00,vftabscale);
215 vfitab = _mm_cvttpd_epi32(rt);
217 vfeps = _mm_frcz_pd(rt);
219 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
221 twovfeps = _mm_add_pd(vfeps,vfeps);
222 vfitab = _mm_slli_epi32(vfitab,2);
224 /* CUBIC SPLINE TABLE ELECTROSTATICS */
225 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
226 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
227 GMX_MM_TRANSPOSE2_PD(Y,F);
228 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
229 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
230 GMX_MM_TRANSPOSE2_PD(G,H);
231 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
232 VV = _mm_macc_pd(vfeps,Fp,Y);
233 velec = _mm_mul_pd(qq00,VV);
234 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
235 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq00,FF),_mm_mul_pd(vftabscale,rinv00)));
237 /* Update potential sum for this i atom from the interaction with this j atom. */
238 velecsum = _mm_add_pd(velecsum,velec);
242 /* Update vectorial force */
243 fix0 = _mm_macc_pd(dx00,fscal,fix0);
244 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
245 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
247 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
248 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
249 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
251 /**************************
252 * CALCULATE INTERACTIONS *
253 **************************/
255 r10 = _mm_mul_pd(rsq10,rinv10);
257 /* Compute parameters for interactions between i and j atoms */
258 qq10 = _mm_mul_pd(iq1,jq0);
260 /* Calculate table index by multiplying r with table scale and truncate to integer */
261 rt = _mm_mul_pd(r10,vftabscale);
262 vfitab = _mm_cvttpd_epi32(rt);
264 vfeps = _mm_frcz_pd(rt);
266 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
268 twovfeps = _mm_add_pd(vfeps,vfeps);
269 vfitab = _mm_slli_epi32(vfitab,2);
271 /* CUBIC SPLINE TABLE ELECTROSTATICS */
272 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
273 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
274 GMX_MM_TRANSPOSE2_PD(Y,F);
275 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
276 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
277 GMX_MM_TRANSPOSE2_PD(G,H);
278 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
279 VV = _mm_macc_pd(vfeps,Fp,Y);
280 velec = _mm_mul_pd(qq10,VV);
281 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
282 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq10,FF),_mm_mul_pd(vftabscale,rinv10)));
284 /* Update potential sum for this i atom from the interaction with this j atom. */
285 velecsum = _mm_add_pd(velecsum,velec);
289 /* Update vectorial force */
290 fix1 = _mm_macc_pd(dx10,fscal,fix1);
291 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
292 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
294 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
295 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
296 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
298 /**************************
299 * CALCULATE INTERACTIONS *
300 **************************/
302 r20 = _mm_mul_pd(rsq20,rinv20);
304 /* Compute parameters for interactions between i and j atoms */
305 qq20 = _mm_mul_pd(iq2,jq0);
307 /* Calculate table index by multiplying r with table scale and truncate to integer */
308 rt = _mm_mul_pd(r20,vftabscale);
309 vfitab = _mm_cvttpd_epi32(rt);
311 vfeps = _mm_frcz_pd(rt);
313 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
315 twovfeps = _mm_add_pd(vfeps,vfeps);
316 vfitab = _mm_slli_epi32(vfitab,2);
318 /* CUBIC SPLINE TABLE ELECTROSTATICS */
319 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
320 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
321 GMX_MM_TRANSPOSE2_PD(Y,F);
322 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
323 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
324 GMX_MM_TRANSPOSE2_PD(G,H);
325 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
326 VV = _mm_macc_pd(vfeps,Fp,Y);
327 velec = _mm_mul_pd(qq20,VV);
328 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
329 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq20,FF),_mm_mul_pd(vftabscale,rinv20)));
331 /* Update potential sum for this i atom from the interaction with this j atom. */
332 velecsum = _mm_add_pd(velecsum,velec);
336 /* Update vectorial force */
337 fix2 = _mm_macc_pd(dx20,fscal,fix2);
338 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
339 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
341 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
342 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
343 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
345 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
347 /* Inner loop uses 141 flops */
354 j_coord_offsetA = DIM*jnrA;
356 /* load j atom coordinates */
357 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
360 /* Calculate displacement vector */
361 dx00 = _mm_sub_pd(ix0,jx0);
362 dy00 = _mm_sub_pd(iy0,jy0);
363 dz00 = _mm_sub_pd(iz0,jz0);
364 dx10 = _mm_sub_pd(ix1,jx0);
365 dy10 = _mm_sub_pd(iy1,jy0);
366 dz10 = _mm_sub_pd(iz1,jz0);
367 dx20 = _mm_sub_pd(ix2,jx0);
368 dy20 = _mm_sub_pd(iy2,jy0);
369 dz20 = _mm_sub_pd(iz2,jz0);
371 /* Calculate squared distance and things based on it */
372 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
373 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
374 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
376 rinv00 = gmx_mm_invsqrt_pd(rsq00);
377 rinv10 = gmx_mm_invsqrt_pd(rsq10);
378 rinv20 = gmx_mm_invsqrt_pd(rsq20);
380 /* Load parameters for j particles */
381 jq0 = _mm_load_sd(charge+jnrA+0);
383 fjx0 = _mm_setzero_pd();
384 fjy0 = _mm_setzero_pd();
385 fjz0 = _mm_setzero_pd();
387 /**************************
388 * CALCULATE INTERACTIONS *
389 **************************/
391 r00 = _mm_mul_pd(rsq00,rinv00);
393 /* Compute parameters for interactions between i and j atoms */
394 qq00 = _mm_mul_pd(iq0,jq0);
396 /* Calculate table index by multiplying r with table scale and truncate to integer */
397 rt = _mm_mul_pd(r00,vftabscale);
398 vfitab = _mm_cvttpd_epi32(rt);
400 vfeps = _mm_frcz_pd(rt);
402 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
404 twovfeps = _mm_add_pd(vfeps,vfeps);
405 vfitab = _mm_slli_epi32(vfitab,2);
407 /* CUBIC SPLINE TABLE ELECTROSTATICS */
408 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
409 F = _mm_setzero_pd();
410 GMX_MM_TRANSPOSE2_PD(Y,F);
411 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
412 H = _mm_setzero_pd();
413 GMX_MM_TRANSPOSE2_PD(G,H);
414 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
415 VV = _mm_macc_pd(vfeps,Fp,Y);
416 velec = _mm_mul_pd(qq00,VV);
417 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
418 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq00,FF),_mm_mul_pd(vftabscale,rinv00)));
420 /* Update potential sum for this i atom from the interaction with this j atom. */
421 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
422 velecsum = _mm_add_pd(velecsum,velec);
426 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
428 /* Update vectorial force */
429 fix0 = _mm_macc_pd(dx00,fscal,fix0);
430 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
431 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
433 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
434 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
435 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
437 /**************************
438 * CALCULATE INTERACTIONS *
439 **************************/
441 r10 = _mm_mul_pd(rsq10,rinv10);
443 /* Compute parameters for interactions between i and j atoms */
444 qq10 = _mm_mul_pd(iq1,jq0);
446 /* Calculate table index by multiplying r with table scale and truncate to integer */
447 rt = _mm_mul_pd(r10,vftabscale);
448 vfitab = _mm_cvttpd_epi32(rt);
450 vfeps = _mm_frcz_pd(rt);
452 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
454 twovfeps = _mm_add_pd(vfeps,vfeps);
455 vfitab = _mm_slli_epi32(vfitab,2);
457 /* CUBIC SPLINE TABLE ELECTROSTATICS */
458 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
459 F = _mm_setzero_pd();
460 GMX_MM_TRANSPOSE2_PD(Y,F);
461 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
462 H = _mm_setzero_pd();
463 GMX_MM_TRANSPOSE2_PD(G,H);
464 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
465 VV = _mm_macc_pd(vfeps,Fp,Y);
466 velec = _mm_mul_pd(qq10,VV);
467 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
468 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq10,FF),_mm_mul_pd(vftabscale,rinv10)));
470 /* Update potential sum for this i atom from the interaction with this j atom. */
471 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
472 velecsum = _mm_add_pd(velecsum,velec);
476 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
478 /* Update vectorial force */
479 fix1 = _mm_macc_pd(dx10,fscal,fix1);
480 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
481 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
483 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
484 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
485 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
487 /**************************
488 * CALCULATE INTERACTIONS *
489 **************************/
491 r20 = _mm_mul_pd(rsq20,rinv20);
493 /* Compute parameters for interactions between i and j atoms */
494 qq20 = _mm_mul_pd(iq2,jq0);
496 /* Calculate table index by multiplying r with table scale and truncate to integer */
497 rt = _mm_mul_pd(r20,vftabscale);
498 vfitab = _mm_cvttpd_epi32(rt);
500 vfeps = _mm_frcz_pd(rt);
502 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
504 twovfeps = _mm_add_pd(vfeps,vfeps);
505 vfitab = _mm_slli_epi32(vfitab,2);
507 /* CUBIC SPLINE TABLE ELECTROSTATICS */
508 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
509 F = _mm_setzero_pd();
510 GMX_MM_TRANSPOSE2_PD(Y,F);
511 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
512 H = _mm_setzero_pd();
513 GMX_MM_TRANSPOSE2_PD(G,H);
514 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
515 VV = _mm_macc_pd(vfeps,Fp,Y);
516 velec = _mm_mul_pd(qq20,VV);
517 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
518 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq20,FF),_mm_mul_pd(vftabscale,rinv20)));
520 /* Update potential sum for this i atom from the interaction with this j atom. */
521 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
522 velecsum = _mm_add_pd(velecsum,velec);
526 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
528 /* Update vectorial force */
529 fix2 = _mm_macc_pd(dx20,fscal,fix2);
530 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
531 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
533 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
534 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
535 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
537 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
539 /* Inner loop uses 141 flops */
542 /* End of innermost loop */
544 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
545 f+i_coord_offset,fshift+i_shift_offset);
548 /* Update potential energies */
549 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
551 /* Increment number of inner iterations */
552 inneriter += j_index_end - j_index_start;
554 /* Outer loop uses 19 flops */
557 /* Increment number of outer iterations */
560 /* Update outer/inner flops */
562 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3_VF,outeriter*19 + inneriter*141);
565 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwNone_GeomW3P1_F_avx_128_fma_double
566 * Electrostatics interaction: CubicSplineTable
567 * VdW interaction: None
568 * Geometry: Water3-Particle
569 * Calculate force/pot: Force
572 nb_kernel_ElecCSTab_VdwNone_GeomW3P1_F_avx_128_fma_double
573 (t_nblist * gmx_restrict nlist,
574 rvec * gmx_restrict xx,
575 rvec * gmx_restrict ff,
576 t_forcerec * gmx_restrict fr,
577 t_mdatoms * gmx_restrict mdatoms,
578 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
579 t_nrnb * gmx_restrict nrnb)
581 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
582 * just 0 for non-waters.
583 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
584 * jnr indices corresponding to data put in the four positions in the SIMD register.
586 int i_shift_offset,i_coord_offset,outeriter,inneriter;
587 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
589 int j_coord_offsetA,j_coord_offsetB;
590 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
592 real *shiftvec,*fshift,*x,*f;
593 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
595 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
597 __m128d ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
599 __m128d ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
600 int vdwjidx0A,vdwjidx0B;
601 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
602 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
603 __m128d dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
604 __m128d dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
605 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
608 __m128i ifour = _mm_set1_epi32(4);
609 __m128d rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF,twovfeps;
611 __m128d dummy_mask,cutoff_mask;
612 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
613 __m128d one = _mm_set1_pd(1.0);
614 __m128d two = _mm_set1_pd(2.0);
620 jindex = nlist->jindex;
622 shiftidx = nlist->shift;
624 shiftvec = fr->shift_vec[0];
625 fshift = fr->fshift[0];
626 facel = _mm_set1_pd(fr->epsfac);
627 charge = mdatoms->chargeA;
629 vftab = kernel_data->table_elec->data;
630 vftabscale = _mm_set1_pd(kernel_data->table_elec->scale);
632 /* Setup water-specific parameters */
633 inr = nlist->iinr[0];
634 iq0 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+0]));
635 iq1 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
636 iq2 = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
638 /* Avoid stupid compiler warnings */
646 /* Start outer loop over neighborlists */
647 for(iidx=0; iidx<nri; iidx++)
649 /* Load shift vector for this list */
650 i_shift_offset = DIM*shiftidx[iidx];
652 /* Load limits for loop over neighbors */
653 j_index_start = jindex[iidx];
654 j_index_end = jindex[iidx+1];
656 /* Get outer coordinate index */
658 i_coord_offset = DIM*inr;
660 /* Load i particle coords and add shift vector */
661 gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
662 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
664 fix0 = _mm_setzero_pd();
665 fiy0 = _mm_setzero_pd();
666 fiz0 = _mm_setzero_pd();
667 fix1 = _mm_setzero_pd();
668 fiy1 = _mm_setzero_pd();
669 fiz1 = _mm_setzero_pd();
670 fix2 = _mm_setzero_pd();
671 fiy2 = _mm_setzero_pd();
672 fiz2 = _mm_setzero_pd();
674 /* Start inner kernel loop */
675 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
678 /* Get j neighbor index, and coordinate index */
681 j_coord_offsetA = DIM*jnrA;
682 j_coord_offsetB = DIM*jnrB;
684 /* load j atom coordinates */
685 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
688 /* Calculate displacement vector */
689 dx00 = _mm_sub_pd(ix0,jx0);
690 dy00 = _mm_sub_pd(iy0,jy0);
691 dz00 = _mm_sub_pd(iz0,jz0);
692 dx10 = _mm_sub_pd(ix1,jx0);
693 dy10 = _mm_sub_pd(iy1,jy0);
694 dz10 = _mm_sub_pd(iz1,jz0);
695 dx20 = _mm_sub_pd(ix2,jx0);
696 dy20 = _mm_sub_pd(iy2,jy0);
697 dz20 = _mm_sub_pd(iz2,jz0);
699 /* Calculate squared distance and things based on it */
700 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
701 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
702 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
704 rinv00 = gmx_mm_invsqrt_pd(rsq00);
705 rinv10 = gmx_mm_invsqrt_pd(rsq10);
706 rinv20 = gmx_mm_invsqrt_pd(rsq20);
708 /* Load parameters for j particles */
709 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
711 fjx0 = _mm_setzero_pd();
712 fjy0 = _mm_setzero_pd();
713 fjz0 = _mm_setzero_pd();
715 /**************************
716 * CALCULATE INTERACTIONS *
717 **************************/
719 r00 = _mm_mul_pd(rsq00,rinv00);
721 /* Compute parameters for interactions between i and j atoms */
722 qq00 = _mm_mul_pd(iq0,jq0);
724 /* Calculate table index by multiplying r with table scale and truncate to integer */
725 rt = _mm_mul_pd(r00,vftabscale);
726 vfitab = _mm_cvttpd_epi32(rt);
728 vfeps = _mm_frcz_pd(rt);
730 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
732 twovfeps = _mm_add_pd(vfeps,vfeps);
733 vfitab = _mm_slli_epi32(vfitab,2);
735 /* CUBIC SPLINE TABLE ELECTROSTATICS */
736 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
737 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
738 GMX_MM_TRANSPOSE2_PD(Y,F);
739 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
740 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
741 GMX_MM_TRANSPOSE2_PD(G,H);
742 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
743 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
744 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq00,FF),_mm_mul_pd(vftabscale,rinv00)));
748 /* Update vectorial force */
749 fix0 = _mm_macc_pd(dx00,fscal,fix0);
750 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
751 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
753 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
754 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
755 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
757 /**************************
758 * CALCULATE INTERACTIONS *
759 **************************/
761 r10 = _mm_mul_pd(rsq10,rinv10);
763 /* Compute parameters for interactions between i and j atoms */
764 qq10 = _mm_mul_pd(iq1,jq0);
766 /* Calculate table index by multiplying r with table scale and truncate to integer */
767 rt = _mm_mul_pd(r10,vftabscale);
768 vfitab = _mm_cvttpd_epi32(rt);
770 vfeps = _mm_frcz_pd(rt);
772 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
774 twovfeps = _mm_add_pd(vfeps,vfeps);
775 vfitab = _mm_slli_epi32(vfitab,2);
777 /* CUBIC SPLINE TABLE ELECTROSTATICS */
778 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
779 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
780 GMX_MM_TRANSPOSE2_PD(Y,F);
781 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
782 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
783 GMX_MM_TRANSPOSE2_PD(G,H);
784 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
785 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
786 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq10,FF),_mm_mul_pd(vftabscale,rinv10)));
790 /* Update vectorial force */
791 fix1 = _mm_macc_pd(dx10,fscal,fix1);
792 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
793 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
795 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
796 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
797 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
799 /**************************
800 * CALCULATE INTERACTIONS *
801 **************************/
803 r20 = _mm_mul_pd(rsq20,rinv20);
805 /* Compute parameters for interactions between i and j atoms */
806 qq20 = _mm_mul_pd(iq2,jq0);
808 /* Calculate table index by multiplying r with table scale and truncate to integer */
809 rt = _mm_mul_pd(r20,vftabscale);
810 vfitab = _mm_cvttpd_epi32(rt);
812 vfeps = _mm_frcz_pd(rt);
814 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
816 twovfeps = _mm_add_pd(vfeps,vfeps);
817 vfitab = _mm_slli_epi32(vfitab,2);
819 /* CUBIC SPLINE TABLE ELECTROSTATICS */
820 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
821 F = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) );
822 GMX_MM_TRANSPOSE2_PD(Y,F);
823 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
824 H = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,1) +2);
825 GMX_MM_TRANSPOSE2_PD(G,H);
826 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
827 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
828 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq20,FF),_mm_mul_pd(vftabscale,rinv20)));
832 /* Update vectorial force */
833 fix2 = _mm_macc_pd(dx20,fscal,fix2);
834 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
835 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
837 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
838 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
839 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
841 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
843 /* Inner loop uses 129 flops */
850 j_coord_offsetA = DIM*jnrA;
852 /* load j atom coordinates */
853 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
856 /* Calculate displacement vector */
857 dx00 = _mm_sub_pd(ix0,jx0);
858 dy00 = _mm_sub_pd(iy0,jy0);
859 dz00 = _mm_sub_pd(iz0,jz0);
860 dx10 = _mm_sub_pd(ix1,jx0);
861 dy10 = _mm_sub_pd(iy1,jy0);
862 dz10 = _mm_sub_pd(iz1,jz0);
863 dx20 = _mm_sub_pd(ix2,jx0);
864 dy20 = _mm_sub_pd(iy2,jy0);
865 dz20 = _mm_sub_pd(iz2,jz0);
867 /* Calculate squared distance and things based on it */
868 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
869 rsq10 = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
870 rsq20 = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
872 rinv00 = gmx_mm_invsqrt_pd(rsq00);
873 rinv10 = gmx_mm_invsqrt_pd(rsq10);
874 rinv20 = gmx_mm_invsqrt_pd(rsq20);
876 /* Load parameters for j particles */
877 jq0 = _mm_load_sd(charge+jnrA+0);
879 fjx0 = _mm_setzero_pd();
880 fjy0 = _mm_setzero_pd();
881 fjz0 = _mm_setzero_pd();
883 /**************************
884 * CALCULATE INTERACTIONS *
885 **************************/
887 r00 = _mm_mul_pd(rsq00,rinv00);
889 /* Compute parameters for interactions between i and j atoms */
890 qq00 = _mm_mul_pd(iq0,jq0);
892 /* Calculate table index by multiplying r with table scale and truncate to integer */
893 rt = _mm_mul_pd(r00,vftabscale);
894 vfitab = _mm_cvttpd_epi32(rt);
896 vfeps = _mm_frcz_pd(rt);
898 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
900 twovfeps = _mm_add_pd(vfeps,vfeps);
901 vfitab = _mm_slli_epi32(vfitab,2);
903 /* CUBIC SPLINE TABLE ELECTROSTATICS */
904 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
905 F = _mm_setzero_pd();
906 GMX_MM_TRANSPOSE2_PD(Y,F);
907 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
908 H = _mm_setzero_pd();
909 GMX_MM_TRANSPOSE2_PD(G,H);
910 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
911 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
912 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq00,FF),_mm_mul_pd(vftabscale,rinv00)));
916 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
918 /* Update vectorial force */
919 fix0 = _mm_macc_pd(dx00,fscal,fix0);
920 fiy0 = _mm_macc_pd(dy00,fscal,fiy0);
921 fiz0 = _mm_macc_pd(dz00,fscal,fiz0);
923 fjx0 = _mm_macc_pd(dx00,fscal,fjx0);
924 fjy0 = _mm_macc_pd(dy00,fscal,fjy0);
925 fjz0 = _mm_macc_pd(dz00,fscal,fjz0);
927 /**************************
928 * CALCULATE INTERACTIONS *
929 **************************/
931 r10 = _mm_mul_pd(rsq10,rinv10);
933 /* Compute parameters for interactions between i and j atoms */
934 qq10 = _mm_mul_pd(iq1,jq0);
936 /* Calculate table index by multiplying r with table scale and truncate to integer */
937 rt = _mm_mul_pd(r10,vftabscale);
938 vfitab = _mm_cvttpd_epi32(rt);
940 vfeps = _mm_frcz_pd(rt);
942 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
944 twovfeps = _mm_add_pd(vfeps,vfeps);
945 vfitab = _mm_slli_epi32(vfitab,2);
947 /* CUBIC SPLINE TABLE ELECTROSTATICS */
948 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
949 F = _mm_setzero_pd();
950 GMX_MM_TRANSPOSE2_PD(Y,F);
951 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
952 H = _mm_setzero_pd();
953 GMX_MM_TRANSPOSE2_PD(G,H);
954 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
955 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
956 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq10,FF),_mm_mul_pd(vftabscale,rinv10)));
960 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
962 /* Update vectorial force */
963 fix1 = _mm_macc_pd(dx10,fscal,fix1);
964 fiy1 = _mm_macc_pd(dy10,fscal,fiy1);
965 fiz1 = _mm_macc_pd(dz10,fscal,fiz1);
967 fjx0 = _mm_macc_pd(dx10,fscal,fjx0);
968 fjy0 = _mm_macc_pd(dy10,fscal,fjy0);
969 fjz0 = _mm_macc_pd(dz10,fscal,fjz0);
971 /**************************
972 * CALCULATE INTERACTIONS *
973 **************************/
975 r20 = _mm_mul_pd(rsq20,rinv20);
977 /* Compute parameters for interactions between i and j atoms */
978 qq20 = _mm_mul_pd(iq2,jq0);
980 /* Calculate table index by multiplying r with table scale and truncate to integer */
981 rt = _mm_mul_pd(r20,vftabscale);
982 vfitab = _mm_cvttpd_epi32(rt);
984 vfeps = _mm_frcz_pd(rt);
986 vfeps = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
988 twovfeps = _mm_add_pd(vfeps,vfeps);
989 vfitab = _mm_slli_epi32(vfitab,2);
991 /* CUBIC SPLINE TABLE ELECTROSTATICS */
992 Y = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) );
993 F = _mm_setzero_pd();
994 GMX_MM_TRANSPOSE2_PD(Y,F);
995 G = _mm_load_pd( vftab + _mm_extract_epi32(vfitab,0) +2);
996 H = _mm_setzero_pd();
997 GMX_MM_TRANSPOSE2_PD(G,H);
998 Fp = _mm_macc_pd(vfeps,_mm_macc_pd(vfeps,H,G),F);
999 FF = _mm_macc_pd(_mm_macc_pd(twovfeps,H,G),vfeps,Fp);
1000 felec = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq20,FF),_mm_mul_pd(vftabscale,rinv20)));
1004 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
1006 /* Update vectorial force */
1007 fix2 = _mm_macc_pd(dx20,fscal,fix2);
1008 fiy2 = _mm_macc_pd(dy20,fscal,fiy2);
1009 fiz2 = _mm_macc_pd(dz20,fscal,fiz2);
1011 fjx0 = _mm_macc_pd(dx20,fscal,fjx0);
1012 fjy0 = _mm_macc_pd(dy20,fscal,fjy0);
1013 fjz0 = _mm_macc_pd(dz20,fscal,fjz0);
1015 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1017 /* Inner loop uses 129 flops */
1020 /* End of innermost loop */
1022 gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1023 f+i_coord_offset,fshift+i_shift_offset);
1025 /* Increment number of inner iterations */
1026 inneriter += j_index_end - j_index_start;
1028 /* Outer loop uses 18 flops */
1031 /* Increment number of outer iterations */
1034 /* Update outer/inner flops */
1036 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_W3_F,outeriter*18 + inneriter*129);