2 * Copyright (c) Erik Lindahl, David van der Spoel 2003
4 * This file is generated automatically at compile time
5 * by the program mknb in the Gromacs distribution.
7 * Options used when generation this file:
11 * Software invsqrt: no
20 #ifdef GMX_THREAD_SHM_FDECOMP
21 #include<thread_mpi.h>
23 #define ALMOST_ZERO 1e-30
24 #define ALMOST_ONE 1-(1e-30)
27 #include "nb_kernel311_adress.h"
32 * Gromacs nonbonded kernel nb_kernel311_adress_cg
33 * Coulomb interaction: Tabulated
34 * VdW interaction: Lennard-Jones
35 * water optimization: SPC/TIP3P - other atoms
36 * Calculate forces: yes
38 void nb_kernel311_adress_cg(
72 int nri,ntype,nthreads;
73 real facel,krf,crf,tabscale,gbtabscale;
74 int n,ii,is3,ii3,k,nj0,nj1,jnr,j3,ggid;
75 int nn0,nn1,nouter,ninner;
88 real Y,F,Geps,Heps2,Fp,VV;
91 real ix1,iy1,iz1,fix1,fiy1,fiz1;
92 real ix2,iy2,iz2,fix2,fiy2,fiz2;
93 real ix3,iy3,iz3,fix3,fiy3,fiz3;
94 real jx1,jy1,jz1,fjx1,fjy1,fjz1;
95 real dx11,dy11,dz11,rsq11,rinv11;
96 real dx21,dy21,dz21,rsq21,rinv21;
97 real dx31,dy31,dz31,rsq31,rinv31;
100 real weight_cg1, weight_cg2, weight_product;
105 nthreads = *p_nthreads;
109 tabscale = *p_tabscale;
111 qO = facel*charge[ii];
112 qH = facel*charge[ii+1];
113 nti = 2*ntype*type[ii];
120 #ifdef GMX_THREAD_SHM_FDECOMP
121 tMPI_Thread_mutex_lock((tMPI_Thread_mutex_t *)mtx);
123 nn1 = nn0+(nri-nn0)/(2*nthreads)+10;
125 tMPI_Thread_mutex_unlock((tMPI_Thread_mutex_t *)mtx);
132 for(n=nn0; (n<nn1); n++)
136 shY = shiftvec[is3+1];
137 shZ = shiftvec[is3+2];
142 ix1 = shX + pos[ii3+0];
143 iy1 = shY + pos[ii3+1];
144 iz1 = shZ + pos[ii3+2];
145 ix2 = shX + pos[ii3+3];
146 iy2 = shY + pos[ii3+4];
147 iz2 = shZ + pos[ii3+5];
148 ix3 = shX + pos[ii3+6];
149 iy3 = shY + pos[ii3+7];
150 iz3 = shZ + pos[ii3+8];
164 for(k=nj0; (k<nj1); k++)
167 weight_cg2 = wf[jnr];
168 weight_product = weight_cg1*weight_cg2;
169 if (weight_product < ALMOST_ZERO) {
172 else if (weight_product >= ALMOST_ONE)
174 /* force is zero, skip this molecule */
179 hybscal = 1.0 - weight_product;
188 rsq11 = dx11*dx11+dy11*dy11+dz11*dz11;
192 rsq21 = dx21*dx21+dy21*dy21+dz21*dz21;
196 rsq31 = dx31*dx31+dy31*dy31+dz31*dz31;
197 rinv11 = 1.0/sqrt(rsq11);
198 rinv21 = 1.0/sqrt(rsq21);
199 rinv31 = 1.0/sqrt(rsq31);
202 tj = nti+2*type[jnr];
204 c12 = vdwparam[tj+1];
205 rinvsq = rinv11*rinv11;
214 Geps = eps*VFtab[nnn+2];
215 Heps2 = eps2*VFtab[nnn+3];
218 FF = Fp+Geps+2.0*Heps2;
221 vctot = vctot + vcoul;
222 rinvsix = rinvsq*rinvsq*rinvsq;
224 Vvdw12 = c12*rinvsix*rinvsix;
225 Vvdwtot = Vvdwtot+Vvdw12-Vvdw6;
226 fscal = (12.0*Vvdw12-6.0*Vvdw6)*rinvsq-((fijC)*tabscale)*rinv11;
234 fjx1 = faction[j3+0] - tx;
235 fjy1 = faction[j3+1] - ty;
236 fjz1 = faction[j3+2] - tz;
246 Geps = eps*VFtab[nnn+2];
247 Heps2 = eps2*VFtab[nnn+3];
250 FF = Fp+Geps+2.0*Heps2;
253 vctot = vctot + vcoul;
254 fscal = -((fijC)*tabscale)*rinv21;
273 Geps = eps*VFtab[nnn+2];
274 Heps2 = eps2*VFtab[nnn+3];
277 FF = Fp+Geps+2.0*Heps2;
280 vctot = vctot + vcoul;
281 fscal = -((fijC)*tabscale)*rinv31;
289 faction[j3+0] = fjx1 - tx;
290 faction[j3+1] = fjy1 - ty;
291 faction[j3+2] = fjz1 - tz;
294 faction[ii3+0] = faction[ii3+0] + fix1;
295 faction[ii3+1] = faction[ii3+1] + fiy1;
296 faction[ii3+2] = faction[ii3+2] + fiz1;
297 faction[ii3+3] = faction[ii3+3] + fix2;
298 faction[ii3+4] = faction[ii3+4] + fiy2;
299 faction[ii3+5] = faction[ii3+5] + fiz2;
300 faction[ii3+6] = faction[ii3+6] + fix3;
301 faction[ii3+7] = faction[ii3+7] + fiy3;
302 faction[ii3+8] = faction[ii3+8] + fiz3;
303 fshift[is3] = fshift[is3]+fix1+fix2+fix3;
304 fshift[is3+1] = fshift[is3+1]+fiy1+fiy2+fiy3;
305 fshift[is3+2] = fshift[is3+2]+fiz1+fiz2+fiz3;
307 Vc[ggid] = Vc[ggid] + vctot;
308 Vvdw[ggid] = Vvdw[ggid] + Vvdwtot;
309 ninner = ninner + nj1 - nj0;
312 nouter = nouter + nn1 - nn0;
325 * Gromacs nonbonded kernel nb_kernel311_adress_ex
326 * Coulomb interaction: Tabulated
327 * VdW interaction: Lennard-Jones
328 * water optimization: SPC/TIP3P - other atoms
329 * Calculate forces: yes
331 void nb_kernel311_adress_ex(
365 int nri,ntype,nthreads;
366 real facel,krf,crf,tabscale,gbtabscale;
367 int n,ii,is3,ii3,k,nj0,nj1,jnr,j3,ggid;
368 int nn0,nn1,nouter,ninner;
381 real Y,F,Geps,Heps2,Fp,VV;
384 real ix1,iy1,iz1,fix1,fiy1,fiz1;
385 real ix2,iy2,iz2,fix2,fiy2,fiz2;
386 real ix3,iy3,iz3,fix3,fiy3,fiz3;
387 real jx1,jy1,jz1,fjx1,fjy1,fjz1;
388 real dx11,dy11,dz11,rsq11,rinv11;
389 real dx21,dy21,dz21,rsq21,rinv21;
390 real dx31,dy31,dz31,rsq31,rinv31;
393 real weight_cg1, weight_cg2, weight_product;
398 nthreads = *p_nthreads;
402 tabscale = *p_tabscale;
404 qO = facel*charge[ii];
405 qH = facel*charge[ii+1];
406 nti = 2*ntype*type[ii];
413 #ifdef GMX_THREAD_SHM_FDECOMP
414 tMPI_Thread_mutex_lock((tMPI_Thread_mutex_t *)mtx);
416 nn1 = nn0+(nri-nn0)/(2*nthreads)+10;
418 tMPI_Thread_mutex_unlock((tMPI_Thread_mutex_t *)mtx);
425 for(n=nn0; (n<nn1); n++)
429 shY = shiftvec[is3+1];
430 shZ = shiftvec[is3+2];
435 ix1 = shX + pos[ii3+0];
436 iy1 = shY + pos[ii3+1];
437 iz1 = shZ + pos[ii3+2];
438 ix2 = shX + pos[ii3+3];
439 iy2 = shY + pos[ii3+4];
440 iz2 = shZ + pos[ii3+5];
441 ix3 = shX + pos[ii3+6];
442 iy3 = shY + pos[ii3+7];
443 iz3 = shZ + pos[ii3+8];
457 for(k=nj0; (k<nj1); k++)
460 weight_cg2 = wf[jnr];
461 weight_product = weight_cg1*weight_cg2;
462 if (weight_product < ALMOST_ZERO) {
463 /* force is zero, skip this molecule */
466 else if (weight_product >= ALMOST_ONE)
472 hybscal = weight_product;
481 rsq11 = dx11*dx11+dy11*dy11+dz11*dz11;
485 rsq21 = dx21*dx21+dy21*dy21+dz21*dz21;
489 rsq31 = dx31*dx31+dy31*dy31+dz31*dz31;
490 rinv11 = 1.0/sqrt(rsq11);
491 rinv21 = 1.0/sqrt(rsq21);
492 rinv31 = 1.0/sqrt(rsq31);
495 tj = nti+2*type[jnr];
497 c12 = vdwparam[tj+1];
498 rinvsq = rinv11*rinv11;
507 Geps = eps*VFtab[nnn+2];
508 Heps2 = eps2*VFtab[nnn+3];
511 FF = Fp+Geps+2.0*Heps2;
514 vctot = vctot + vcoul;
515 rinvsix = rinvsq*rinvsq*rinvsq;
517 Vvdw12 = c12*rinvsix*rinvsix;
518 Vvdwtot = Vvdwtot+Vvdw12-Vvdw6;
519 fscal = (12.0*Vvdw12-6.0*Vvdw6)*rinvsq-((fijC)*tabscale)*rinv11;
521 if(force_cap>0 && (fabs(fscal)> force_cap)){
522 fscal=force_cap*fscal/fabs(fscal);
530 fjx1 = faction[j3+0] - tx;
531 fjy1 = faction[j3+1] - ty;
532 fjz1 = faction[j3+2] - tz;
542 Geps = eps*VFtab[nnn+2];
543 Heps2 = eps2*VFtab[nnn+3];
546 FF = Fp+Geps+2.0*Heps2;
549 vctot = vctot + vcoul;
550 fscal = -((fijC)*tabscale)*rinv21;
552 if(force_cap>0 && (fabs(fscal)> force_cap)){
553 fscal=force_cap*fscal/fabs(fscal);
572 Geps = eps*VFtab[nnn+2];
573 Heps2 = eps2*VFtab[nnn+3];
576 FF = Fp+Geps+2.0*Heps2;
579 vctot = vctot + vcoul;
580 fscal = -((fijC)*tabscale)*rinv31;
582 if(force_cap>0 && (fabs(fscal)> force_cap)){
583 fscal=force_cap*fscal/fabs(fscal);
591 faction[j3+0] = fjx1 - tx;
592 faction[j3+1] = fjy1 - ty;
593 faction[j3+2] = fjz1 - tz;
596 faction[ii3+0] = faction[ii3+0] + fix1;
597 faction[ii3+1] = faction[ii3+1] + fiy1;
598 faction[ii3+2] = faction[ii3+2] + fiz1;
599 faction[ii3+3] = faction[ii3+3] + fix2;
600 faction[ii3+4] = faction[ii3+4] + fiy2;
601 faction[ii3+5] = faction[ii3+5] + fiz2;
602 faction[ii3+6] = faction[ii3+6] + fix3;
603 faction[ii3+7] = faction[ii3+7] + fiy3;
604 faction[ii3+8] = faction[ii3+8] + fiz3;
605 fshift[is3] = fshift[is3]+fix1+fix2+fix3;
606 fshift[is3+1] = fshift[is3+1]+fiy1+fiy2+fiy3;
607 fshift[is3+2] = fshift[is3+2]+fiz1+fiz2+fiz3;
609 Vc[ggid] = Vc[ggid] + vctot;
610 Vvdw[ggid] = Vvdw[ggid] + Vvdwtot;
611 ninner = ninner + nj1 - nj0;
614 nouter = nouter + nn1 - nn0;