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37 * Implements PME spline computation and charge spreading tests.
39 * \author Aleksei Iupinov <a.yupinov@gmail.com>
40 * \ingroup module_ewald
47 #include <gmock/gmock.h>
49 #include "gromacs/mdtypes/inputrec.h"
50 #include "gromacs/utility/stringutil.h"
52 #include "testutils/refdata.h"
53 #include "testutils/testasserts.h"
55 #include "pmetestcommon.h"
64 //! PME spline and spread code path being tested
65 enum class PmeSplineAndSpreadOptions
69 SplineAndSpreadUnified
72 /*! \brief Convenience typedef of input parameters - unit cell box, PME interpolation order, grid dimensions,
73 * particle coordinates, particle charges
74 * TODO: consider inclusion of local grid offsets/sizes or PME nodes counts to test the PME DD
76 typedef std::tuple<Matrix3x3, int, IVec, CoordinatesVector, ChargesVector> SplineAndSpreadInputParameters;
78 /*! \brief Test fixture for testing both atom spline parameter computation and charge spreading.
79 * These 2 stages of PME are tightly coupled in the code.
81 class PmeSplineAndSpreadTest : public ::testing::TestWithParam<SplineAndSpreadInputParameters>
84 //! Default constructor
85 PmeSplineAndSpreadTest() = default;
89 /* Getting the input */
93 CoordinatesVector coordinates;
94 ChargesVector charges;
96 std::tie(box, pmeOrder, gridSize, coordinates, charges) = GetParam();
97 const size_t atomCount = coordinates.size();
99 /* Storing the input where it's needed */
101 inputRec.nkx = gridSize[XX];
102 inputRec.nky = gridSize[YY];
103 inputRec.nkz = gridSize[ZZ];
104 inputRec.pme_order = pmeOrder;
105 inputRec.coulombtype = eelPME;
106 inputRec.epsilon_r = 1.0;
108 TestReferenceData refData;
110 const std::map<PmeSplineAndSpreadOptions, std::string> optionsToTest = {{PmeSplineAndSpreadOptions::SplineAndSpreadUnified, "spline computation and charge spreading (fused)"},
111 {PmeSplineAndSpreadOptions::SplineOnly, "spline computation"},
112 {PmeSplineAndSpreadOptions::SpreadOnly, "charge spreading"}};
114 // There is a subtle problem with multiple comparisons against same reference data:
115 // The subsequent (GPU) spreading runs at one point didn't actually copy the output grid into the proper buffer,
116 // but the reference data was already marked as checked (hasBeenChecked_) by the CPU run, so nothing failed.
117 // For now we will manually track that the count of the grid entries is the same on each run.
118 // This is just a hack for a single specific output though.
119 // What would be much better TODO is to split different codepaths into separate tests,
120 // while making them use the same reference files.
121 bool gridValuesSizeAssigned = false;
122 size_t previousGridValuesSize;
124 for (const auto &context : getPmeTestEnv()->getHardwareContexts())
126 CodePath codePath = context->getCodePath();
127 const bool supportedInput = pmeSupportsInputForMode(&inputRec, codePath);
130 /* Testing the failure for the unsupported input */
131 EXPECT_THROW(pmeInitAtoms(&inputRec, codePath, nullptr, nullptr, coordinates, charges, box), NotImplementedError);
135 for (const auto &option : optionsToTest)
137 /* Describing the test uniquely in case it fails */
139 SCOPED_TRACE(formatString("Testing %s with %s %sfor PME grid size %d %d %d"
140 ", order %d, %zu atoms",
141 option.second.c_str(), codePathToString(codePath),
142 context->getDescription().c_str(),
143 gridSize[XX], gridSize[YY], gridSize[ZZ],
147 /* Running the test */
149 PmeSafePointer pmeSafe = pmeInitAtoms(&inputRec, codePath, context->getDeviceInfo(),
150 context->getPmeGpuProgram(), coordinates, charges, box);
152 const bool computeSplines = (option.first == PmeSplineAndSpreadOptions::SplineOnly) || (option.first == PmeSplineAndSpreadOptions::SplineAndSpreadUnified);
153 const bool spreadCharges = (option.first == PmeSplineAndSpreadOptions::SpreadOnly) || (option.first == PmeSplineAndSpreadOptions::SplineAndSpreadUnified);
157 // Here we should set up the results of the spline computation so that the spread can run.
158 // What is lazy and works is running the separate spline so that it will set it up for us:
159 pmePerformSplineAndSpread(pmeSafe.get(), codePath, true, false);
160 // We know that it is tested in another iteration.
161 // TODO: Clean alternative: read and set the reference gridline indices, spline params
164 pmePerformSplineAndSpread(pmeSafe.get(), codePath, computeSplines, spreadCharges);
165 pmeFinalizeTest(pmeSafe.get(), codePath);
167 /* Outputs correctness check */
168 /* All tolerances were picked empirically for single precision on CPU */
170 TestReferenceChecker rootChecker(refData.rootChecker());
172 const auto maxGridSize = std::max(std::max(gridSize[XX], gridSize[YY]), gridSize[ZZ]);
173 const auto ulpToleranceSplineValues = 4 * (pmeOrder - 2) * maxGridSize;
174 /* 4 is a modest estimate for amount of operations; (pmeOrder - 2) is a number of iterations;
175 * maxGridSize is inverse of the smallest positive fractional coordinate (which are interpolated by the splines).
180 const char *dimString[] = { "X", "Y", "Z" };
183 SCOPED_TRACE(formatString("Testing spline values with tolerance of %ld", ulpToleranceSplineValues));
184 TestReferenceChecker splineValuesChecker(rootChecker.checkCompound("Splines", "Values"));
185 splineValuesChecker.setDefaultTolerance(relativeToleranceAsUlp(1.0, ulpToleranceSplineValues));
186 for (int i = 0; i < DIM; i++)
188 auto splineValuesDim = pmeGetSplineData(pmeSafe.get(), codePath, PmeSplineDataType::Values, i);
189 splineValuesChecker.checkSequence(splineValuesDim.begin(), splineValuesDim.end(), dimString[i]);
192 /* Spline derivatives */
193 const auto ulpToleranceSplineDerivatives = 4 * ulpToleranceSplineValues;
194 /* 4 is just a wild guess since the derivatives are deltas of neighbor spline values which could differ greatly */
195 SCOPED_TRACE(formatString("Testing spline derivatives with tolerance of %ld", ulpToleranceSplineDerivatives));
196 TestReferenceChecker splineDerivativesChecker(rootChecker.checkCompound("Splines", "Derivatives"));
197 splineDerivativesChecker.setDefaultTolerance(relativeToleranceAsUlp(1.0, ulpToleranceSplineDerivatives));
198 for (int i = 0; i < DIM; i++)
200 auto splineDerivativesDim = pmeGetSplineData(pmeSafe.get(), codePath, PmeSplineDataType::Derivatives, i);
201 splineDerivativesChecker.checkSequence(splineDerivativesDim.begin(), splineDerivativesDim.end(), dimString[i]);
204 /* Particle gridline indices */
205 auto gridLineIndices = pmeGetGridlineIndices(pmeSafe.get(), codePath);
206 rootChecker.checkSequence(gridLineIndices.begin(), gridLineIndices.end(), "Gridline indices");
211 /* The wrapped grid */
212 SparseRealGridValuesOutput nonZeroGridValues = pmeGetRealGrid(pmeSafe.get(), codePath);
213 TestReferenceChecker gridValuesChecker(rootChecker.checkCompound("NonZeroGridValues", "RealSpaceGrid"));
214 const auto ulpToleranceGrid = 2 * ulpToleranceSplineValues * static_cast<int>(ceil(sqrt(atomCount)));
215 /* 2 is empiric; sqrt(atomCount) assumes all the input charges may spread onto the same cell */
216 SCOPED_TRACE(formatString("Testing grid values with tolerance of %ld", ulpToleranceGrid));
217 if (!gridValuesSizeAssigned)
219 previousGridValuesSize = nonZeroGridValues.size();
220 gridValuesSizeAssigned = true;
224 EXPECT_EQ(previousGridValuesSize, nonZeroGridValues.size());
227 gridValuesChecker.setDefaultTolerance(relativeToleranceAsUlp(1.0, ulpToleranceGrid));
228 for (const auto &point : nonZeroGridValues)
230 gridValuesChecker.checkReal(point.second, point.first.c_str());
239 /*! \brief Test for spline parameter computation and charge spreading. */
240 TEST_P(PmeSplineAndSpreadTest, ReproducesOutputs)
242 EXPECT_NO_THROW(runTest());
245 /* Valid input instances */
247 //! A couple of valid inputs for boxes.
248 std::vector<Matrix3x3> const c_sampleBoxes
264 //! A couple of valid inputs for grid sizes.
265 std::vector<IVec> const c_sampleGridSizes
276 std::vector<real> const c_sampleChargesFull
278 4.95f, 3.11f, 3.97f, 1.08f, 2.09f, 1.1f, 4.13f, 3.31f, 2.8f, 5.83f, 5.09f, 6.1f, 2.86f, 0.24f, 5.76f, 5.19f, 0.72f
281 auto const c_sampleCharges1 = ChargesVector(c_sampleChargesFull).subArray(0, 1);
283 auto const c_sampleCharges2 = ChargesVector(c_sampleChargesFull).subArray(1, 2);
285 auto const c_sampleCharges13 = ChargesVector(c_sampleChargesFull).subArray(3, 13);
287 //! Random coordinate vectors
288 CoordinatesVector const c_sampleCoordinatesFull
293 16.0f, 1.02f, 0.22f // 2 box lengths in x
303 16.0001f, 1.52f, 1.19f // > 2 box lengths in x
305 1.43f, 1.1f, 4.1f // > 2 box lengths in z
307 -1.08f, 1.19f, 0.08f // negative x
311 1.32f, -1.48f, 0.16f // negative y
315 0.95f, 7.7f, -0.48f // > 2 box lengths in y, negative z
326 //! 1 coordinate vector
327 CoordinatesVector const c_sampleCoordinates1(c_sampleCoordinatesFull.begin(), c_sampleCoordinatesFull.begin() + 1);
328 //! 2 coordinate vectors
329 CoordinatesVector const c_sampleCoordinates2(c_sampleCoordinatesFull.begin() + 1, c_sampleCoordinatesFull.begin() + 3);
330 //! 13 coordinate vectors
331 CoordinatesVector const c_sampleCoordinates13(c_sampleCoordinatesFull.begin() + 3, c_sampleCoordinatesFull.begin() + 16);
333 //! moved out from instantiantions for readability
334 auto c_inputBoxes = ::testing::ValuesIn(c_sampleBoxes);
335 //! moved out from instantiantions for readability
336 auto c_inputPmeOrders = ::testing::Range(3, 5 + 1);
337 //! moved out from instantiantions for readability
338 auto c_inputGridSizes = ::testing::ValuesIn(c_sampleGridSizes);
340 /*! \brief Instantiation of the test with valid input and 1 atom */
341 INSTANTIATE_TEST_CASE_P(SaneInput1, PmeSplineAndSpreadTest, ::testing::Combine(c_inputBoxes, c_inputPmeOrders, c_inputGridSizes,
342 ::testing::Values(c_sampleCoordinates1),
343 ::testing::Values(c_sampleCharges1)
346 /*! \brief Instantiation of the test with valid input and 2 atoms */
347 INSTANTIATE_TEST_CASE_P(SaneInput2, PmeSplineAndSpreadTest, ::testing::Combine(c_inputBoxes, c_inputPmeOrders, c_inputGridSizes,
348 ::testing::Values(c_sampleCoordinates2),
349 ::testing::Values(c_sampleCharges2)
351 /*! \brief Instantiation of the test with valid input and 13 atoms */
352 INSTANTIATE_TEST_CASE_P(SaneInput13, PmeSplineAndSpreadTest, ::testing::Combine(c_inputBoxes, c_inputPmeOrders, c_inputGridSizes,
353 ::testing::Values(c_sampleCoordinates13),
354 ::testing::Values(c_sampleCharges13)