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37 * Tests for analysis data functionality.
39 * These tests check the functionality of gmx::AnalysisData, as well as classes
40 * used in its implementation: gmx::AbstractAnalysisData and
41 * gmx::AnalysisDataStorage.
42 * Most checking is done using gmx::test::AnalysisDataTestFixture and mock
43 * modules that implement gmx::AnalysisDataModuleInterface.
45 * \author Teemu Murtola <teemu.murtola@gmail.com>
46 * \ingroup module_analysisdata
48 #include <gmock/gmock.h>
49 #include <gtest/gtest.h>
51 #include "gromacs/analysisdata/analysisdata.h"
52 #include "gromacs/analysisdata/paralleloptions.h"
53 #include "gromacs/utility/exceptions.h"
55 #include "gromacs/analysisdata/tests/datatest.h"
56 #include "gromacs/analysisdata/tests/mock_datamodule.h"
57 #include "testutils/testasserts.h"
59 using gmx::test::AnalysisDataTestInput;
60 using gmx::test::MockAnalysisDataModule;
61 using gmx::test::MockAnalysisDataModulePointer;
66 /********************************************************************
67 * Tests for gmx::AnalysisData without any actual data.
71 * Tests that simple initialization works.
73 TEST(AnalysisDataInitializationTest, BasicInitialization)
75 gmx::AnalysisData data;
76 EXPECT_EQ(1, data.dataSetCount());
77 EXPECT_EQ(0, data.columnCount(0));
78 EXPECT_EQ(0, data.columnCount());
79 EXPECT_FALSE(data.isMultipoint());
80 EXPECT_EQ(0, data.frameCount());
82 data.setColumnCount(0, 1);
83 EXPECT_EQ(1, data.columnCount(0));
84 EXPECT_EQ(1, data.columnCount());
85 EXPECT_FALSE(data.isMultipoint());
87 data.setDataSetCount(2);
88 EXPECT_EQ(2, data.dataSetCount());
89 data.setColumnCount(0, 3);
90 EXPECT_EQ(3, data.columnCount(0));
91 EXPECT_EQ(0, data.columnCount(1));
92 data.setColumnCount(1, 2);
93 EXPECT_EQ(3, data.columnCount(0));
94 EXPECT_EQ(2, data.columnCount(1));
96 data.setDataSetCount(1);
97 EXPECT_EQ(1, data.dataSetCount());
98 data.setMultipoint(true);
99 EXPECT_EQ(3, data.columnCount());
100 EXPECT_TRUE(data.isMultipoint());
102 data.setColumnCount(0, 1);
103 EXPECT_EQ(1, data.columnCount());
104 EXPECT_TRUE(data.isMultipoint());
108 * Tests that checking for compatibility of modules with multicolumn data
111 TEST(AnalysisDataInitializationTest, ChecksMultiColumnModules)
113 gmx::AnalysisData data;
114 data.setColumnCount(0, 2);
116 MockAnalysisDataModulePointer mod1(new MockAnalysisDataModule(0));
117 EXPECT_THROW_GMX(data.addModule(mod1), gmx::APIError);
119 MockAnalysisDataModulePointer mod2(
120 new MockAnalysisDataModule(gmx::AnalysisDataModuleInterface::efAllowMulticolumn));
121 EXPECT_NO_THROW_GMX(data.addModule(mod2));
125 * Tests that checking for compatibility of modules with multipoint data
128 TEST(AnalysisDataInitializationTest, ChecksMultipointModules)
130 gmx::AnalysisData data;
131 data.setColumnCount(0, 1);
132 data.setMultipoint(true);
134 MockAnalysisDataModulePointer mod1(new MockAnalysisDataModule(0));
135 EXPECT_THROW_GMX(data.addModule(mod1), gmx::APIError);
137 MockAnalysisDataModulePointer mod2(
138 new MockAnalysisDataModule(gmx::AnalysisDataModuleInterface::efAllowMultipoint));
139 EXPECT_NO_THROW_GMX(data.addModule(mod2));
143 /********************************************************************
144 * Input data for tests below.
147 // Basic input data for gmx::AnalysisData tests.
148 class SimpleInputData
151 static const AnalysisDataTestInput &get()
153 static SimpleInputData singleton;
154 return singleton.data_;
157 SimpleInputData() : data_(1, false)
159 data_.setColumnCount(0, 3);
160 data_.addFrameWithValues(1.0, 0.0, 1.0, 2.0);
161 data_.addFrameWithValues(2.0, 1.0, 1.0, 1.0);
162 data_.addFrameWithValues(3.0, 2.0, 0.0, 0.0);
166 AnalysisDataTestInput data_;
169 // Input data with multiple data sets for gmx::AnalysisData tests.
170 class DataSetsInputData
173 static const AnalysisDataTestInput &get()
175 static DataSetsInputData singleton;
176 return singleton.data_;
179 DataSetsInputData() : data_(2, false)
181 using gmx::test::AnalysisDataTestInputFrame;
182 data_.setColumnCount(0, 3);
183 data_.setColumnCount(1, 2);
184 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
185 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
186 frame1.addPointSetWithValues(1, 0, 2.1, 1.1);
187 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
188 frame2.addPointSetWithValues(0, 0, 1.0, 1.0, 1.0);
189 frame2.addPointSetWithValues(1, 0, 0.1, 2.1);
190 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
191 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
192 frame3.addPointSetWithValues(1, 0, 1.1, 1.1);
196 AnalysisDataTestInput data_;
199 // Input data for multipoint gmx::AnalysisData tests.
200 class MultipointInputData
203 static const AnalysisDataTestInput &get()
205 static MultipointInputData singleton;
206 return singleton.data_;
209 MultipointInputData() : data_(1, true)
211 using gmx::test::AnalysisDataTestInputFrame;
212 data_.setColumnCount(0, 3);
213 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
214 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
215 frame1.addPointSetWithValues(0, 0, 1.1, 2.1, 1.1);
216 frame1.addPointSetWithValues(0, 0, 2.2, 1.2, 0.2);
217 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
218 frame2.addPointSetWithValues(0, 1, 1.0, 1.0);
219 frame2.addPointSetWithValues(0, 0, 2.1, 1.1, 0.1);
220 frame2.addPointSetWithValues(0, 2, 1.2);
221 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
222 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
223 frame3.addPointSetWithValues(0, 0, 3.1, 2.1);
224 frame3.addPointSetWithValues(0, 1, 2.2, 1.2);
228 AnalysisDataTestInput data_;
231 // Input data with multiple multipoint data sets for gmx::AnalysisData tests.
232 class MultipointDataSetsInputData
235 static const AnalysisDataTestInput &get()
237 static MultipointDataSetsInputData singleton;
238 return singleton.data_;
241 MultipointDataSetsInputData() : data_(2, true)
243 using gmx::test::AnalysisDataTestInputFrame;
244 data_.setColumnCount(0, 3);
245 data_.setColumnCount(1, 2);
246 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
247 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
248 frame1.addPointSetWithValues(0, 1, 2.1, 1.1);
249 frame1.addPointSetWithValues(1, 0, 2.01, 1.01);
250 frame1.addPointSetWithValues(1, 1, 0.11);
251 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
252 frame2.addPointSetWithValues(0, 0, 1.0, 1.0, 1.0);
253 frame2.addPointSetWithValues(0, 0, 0.1, 2.1);
254 frame2.addPointSetWithValues(1, 1, 1.01);
255 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
256 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
257 frame3.addPointSetWithValues(0, 1, 1.1);
261 AnalysisDataTestInput data_;
264 /********************************************************************
265 * Tests for gmx::AnalysisData that require data.
268 using gmx::test::AnalysisDataTestFixture;
270 class AnalysisDataTest : public AnalysisDataTestFixture
273 explicit AnalysisDataTest(const AnalysisDataTestInput &input)
280 ASSERT_NO_THROW_GMX(setupDataObject(input_, &data_));
283 void addStaticCheckerModule()
285 AnalysisDataTestFixture::addStaticCheckerModule(input_, &data_);
287 void addStaticParallelCheckerModule()
289 AnalysisDataTestFixture::addStaticParallelCheckerModule(input_, &data_);
291 void addStaticColumnCheckerModule(int firstColumn, int columnCount)
293 AnalysisDataTestFixture::addStaticColumnCheckerModule(
294 input_, firstColumn, columnCount, &data_);
296 void addStaticStorageCheckerModule(int storageCount)
298 AnalysisDataTestFixture::addStaticStorageCheckerModule(
299 input_, storageCount, &data_);
301 void presentAllData()
303 AnalysisDataTestFixture::presentAllData(input_, &data_);
306 const AnalysisDataTestInput &input_;
307 gmx::AnalysisData data_;
310 template <class InputDataType>
311 class AnalysisDataCommonTest : public AnalysisDataTest
314 AnalysisDataCommonTest() : AnalysisDataTest(InputDataType::get())
319 //! Test fixture for tests that are only applicable to simple data.
320 typedef AnalysisDataCommonTest<SimpleInputData> AnalysisDataSimpleTest;
321 //! Test fixture for tests that are only applicable to multipoint data.
322 typedef AnalysisDataCommonTest<MultipointInputData> AnalysisDataMultipointTest;
323 //! List of input data types for tests applicable to all types of data.
324 typedef ::testing::Types<SimpleInputData,
327 MultipointDataSetsInputData>
329 TYPED_TEST_CASE(AnalysisDataCommonTest, AllInputDataTypes);
332 * Tests that data is forwarded correctly to modules using two independent
335 TYPED_TEST(AnalysisDataCommonTest, CallsModuleCorrectly)
337 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
338 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
339 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
343 * Tests that data is forwarded correctly to modules when there are only
346 TYPED_TEST(AnalysisDataCommonTest, CallsParallelModuleCorrectly)
348 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
349 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
350 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
354 * Tests that data is forwarded correctly to modules when there are both
355 * parallel and serial modules.
357 TYPED_TEST(AnalysisDataCommonTest, CallsMixedModulesCorrectly)
359 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
360 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
361 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
365 * Tests that data is forwarded correctly to modules that are added using
367 * Uses two independent modules.
369 TYPED_TEST(AnalysisDataCommonTest, CallsColumnModuleCorrectly)
371 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(0, 2));
372 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(2, 1));
373 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
377 * Tests that data is forwarded correctly (in frame order) to modules when the
378 * data is added through multiple handles in non-increasing order.
380 TYPED_TEST(AnalysisDataCommonTest, CallsModuleCorrectlyWithOutOfOrderFrames)
382 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
383 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
384 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(1, 2));
385 gmx::AnalysisDataHandle handle1;
386 gmx::AnalysisDataHandle handle2;
387 gmx::AnalysisDataParallelOptions options(2);
388 ASSERT_NO_THROW_GMX(handle1 = this->data_.startData(options));
389 ASSERT_NO_THROW_GMX(handle2 = this->data_.startData(options));
390 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 1, handle1));
391 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 0, handle2));
392 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 2, handle1));
393 ASSERT_NO_THROW_GMX(handle1.finishData());
394 ASSERT_NO_THROW_GMX(handle2.finishData());
398 * Tests that data can be accessed correctly from a module that requests
399 * storage using AbstractAnalysisData::requestStorage() with parameter -1.
401 TYPED_TEST(AnalysisDataCommonTest, FullStorageWorks)
403 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticStorageCheckerModule(-1));
404 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
408 * Tests that a data module can be added to an AnalysisData object after data
409 * has been added if all data is still available in storage.
411 TYPED_TEST(AnalysisDataCommonTest, CanAddModuleAfterStoredData)
413 ASSERT_TRUE(this->data_.requestStorage(-1));
415 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
416 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
420 * Tests that data can be accessed correctly from a module that requests
421 * storage using AbstractAnalysisData::requestStorage() only for one frame.
423 TYPED_TEST(AnalysisDataCommonTest, LimitedStorageWorks)
425 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticStorageCheckerModule(1));
426 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());