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37 * Tests for analysis data functionality.
39 * These tests check the functionality of gmx::AnalysisData, as well as classes
40 * used in its implementation: gmx::AbstractAnalysisData and
41 * gmx::AnalysisDataStorage.
42 * Most checking is done using gmx::test::AnalysisDataTestFixture and mock
43 * modules that implement gmx::AnalysisDataModuleInterface.
45 * \author Teemu Murtola <teemu.murtola@gmail.com>
46 * \ingroup module_analysisdata
48 #include <gmock/gmock.h>
49 #include <gtest/gtest.h>
51 #include "gromacs/analysisdata/analysisdata.h"
52 #include "gromacs/analysisdata/paralleloptions.h"
53 #include "gromacs/utility/exceptions.h"
55 #include "gromacs/analysisdata/tests/datatest.h"
56 #include "gromacs/analysisdata/tests/mock_datamodule.h"
57 #include "testutils/testasserts.h"
59 using gmx::test::AnalysisDataTestInput;
60 using gmx::test::MockAnalysisDataModule;
61 using gmx::test::MockAnalysisDataModulePointer;
66 /********************************************************************
67 * Tests for gmx::AnalysisData without any actual data.
71 * Tests that simple initialization works.
73 TEST(AnalysisDataInitializationTest, BasicInitialization)
75 gmx::AnalysisData data;
76 EXPECT_EQ(1, data.dataSetCount());
77 EXPECT_EQ(0, data.columnCount(0));
78 EXPECT_EQ(0, data.columnCount());
79 EXPECT_FALSE(data.isMultipoint());
80 EXPECT_EQ(0, data.frameCount());
82 data.setColumnCount(0, 1);
83 EXPECT_EQ(1, data.columnCount(0));
84 EXPECT_EQ(1, data.columnCount());
85 EXPECT_FALSE(data.isMultipoint());
87 data.setDataSetCount(2);
88 EXPECT_EQ(2, data.dataSetCount());
89 data.setColumnCount(0, 3);
90 EXPECT_EQ(3, data.columnCount(0));
91 EXPECT_EQ(0, data.columnCount(1));
92 data.setColumnCount(1, 2);
93 EXPECT_EQ(3, data.columnCount(0));
94 EXPECT_EQ(2, data.columnCount(1));
96 data.setDataSetCount(1);
97 EXPECT_EQ(1, data.dataSetCount());
98 data.setMultipoint(true);
99 EXPECT_EQ(3, data.columnCount());
100 EXPECT_TRUE(data.isMultipoint());
102 data.setColumnCount(0, 1);
103 EXPECT_EQ(1, data.columnCount());
104 EXPECT_TRUE(data.isMultipoint());
108 * Tests that checking for compatibility of modules with multicolumn data
111 TEST(AnalysisDataInitializationTest, ChecksMultiColumnModules)
113 gmx::AnalysisData data;
114 data.setColumnCount(0, 2);
116 MockAnalysisDataModulePointer mod1(new MockAnalysisDataModule(0));
117 EXPECT_THROW_GMX(data.addModule(mod1), gmx::APIError);
119 MockAnalysisDataModulePointer mod2(
120 new MockAnalysisDataModule(gmx::AnalysisDataModuleInterface::efAllowMulticolumn));
121 EXPECT_NO_THROW_GMX(data.addModule(mod2));
125 * Tests that checking for compatibility of modules with multipoint data
128 TEST(AnalysisDataInitializationTest, ChecksMultipointModules)
130 gmx::AnalysisData data;
131 data.setColumnCount(0, 1);
132 data.setMultipoint(true);
134 MockAnalysisDataModulePointer mod1(new MockAnalysisDataModule(0));
135 EXPECT_THROW_GMX(data.addModule(mod1), gmx::APIError);
137 MockAnalysisDataModulePointer mod2(
138 new MockAnalysisDataModule(gmx::AnalysisDataModuleInterface::efAllowMultipoint));
139 EXPECT_NO_THROW_GMX(data.addModule(mod2));
143 /********************************************************************
144 * Input data for tests below.
147 // Basic input data for gmx::AnalysisData tests.
148 class SimpleInputData
151 static const AnalysisDataTestInput &get()
153 #ifndef INTEL_STATIC_ANON_NAMESPACE_BUG
154 static SimpleInputData singleton;
155 return singleton.data_;
157 static SimpleInputData singleton_analysisdata;
158 return singleton_analysisdata.data_;
162 SimpleInputData() : data_(1, false)
164 data_.setColumnCount(0, 3);
165 data_.addFrameWithValues(1.0, 0.0, 1.0, 2.0);
166 data_.addFrameWithValues(2.0, 1.0, 1.0, 1.0);
167 data_.addFrameWithValues(3.0, 2.0, 0.0, 0.0);
171 AnalysisDataTestInput data_;
174 // Input data with multiple data sets for gmx::AnalysisData tests.
175 class DataSetsInputData
178 static const AnalysisDataTestInput &get()
180 #ifndef INTEL_STATIC_ANON_NAMESPACE_BUG
181 static DataSetsInputData singleton;
182 return singleton.data_;
184 static DataSetsInputData singleton_analysisdata;
185 return singleton_analysisdata.data_;
189 DataSetsInputData() : data_(2, false)
191 using gmx::test::AnalysisDataTestInputFrame;
192 data_.setColumnCount(0, 3);
193 data_.setColumnCount(1, 2);
194 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
195 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
196 frame1.addPointSetWithValues(1, 0, 2.1, 1.1);
197 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
198 frame2.addPointSetWithValues(0, 0, 1.0, 1.0, 1.0);
199 frame2.addPointSetWithValues(1, 0, 0.1, 2.1);
200 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
201 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
202 frame3.addPointSetWithValues(1, 0, 1.1, 1.1);
206 AnalysisDataTestInput data_;
209 // Input data for multipoint gmx::AnalysisData tests.
210 class MultipointInputData
213 static const AnalysisDataTestInput &get()
215 #ifndef INTEL_STATIC_ANON_NAMESPACE_BUG
216 static MultipointInputData singleton;
217 return singleton.data_;
219 static MultipointInputData singleton_analysisdata;
220 return singleton_analysisdata.data_;
224 MultipointInputData() : data_(1, true)
226 using gmx::test::AnalysisDataTestInputFrame;
227 data_.setColumnCount(0, 3);
228 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
229 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
230 frame1.addPointSetWithValues(0, 0, 1.1, 2.1, 1.1);
231 frame1.addPointSetWithValues(0, 0, 2.2, 1.2, 0.2);
232 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
233 frame2.addPointSetWithValues(0, 1, 1.0, 1.0);
234 frame2.addPointSetWithValues(0, 0, 2.1, 1.1, 0.1);
235 frame2.addPointSetWithValues(0, 2, 1.2);
236 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
237 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
238 frame3.addPointSetWithValues(0, 0, 3.1, 2.1);
239 frame3.addPointSetWithValues(0, 1, 2.2, 1.2);
243 AnalysisDataTestInput data_;
246 // Input data with multiple multipoint data sets for gmx::AnalysisData tests.
247 class MultipointDataSetsInputData
250 static const AnalysisDataTestInput &get()
252 #ifndef INTEL_STATIC_ANON_NAMESPACE_BUG
253 static MultipointDataSetsInputData singleton;
254 return singleton.data_;
256 static MultipointDataSetsInputData singleton_analysisdata;
257 return singleton_analysisdata.data_;
261 MultipointDataSetsInputData() : data_(2, true)
263 using gmx::test::AnalysisDataTestInputFrame;
264 data_.setColumnCount(0, 3);
265 data_.setColumnCount(1, 2);
266 AnalysisDataTestInputFrame &frame1 = data_.addFrame(1.0);
267 frame1.addPointSetWithValues(0, 0, 0.0, 1.0, 2.0);
268 frame1.addPointSetWithValues(0, 1, 2.1, 1.1);
269 frame1.addPointSetWithValues(1, 0, 2.01, 1.01);
270 frame1.addPointSetWithValues(1, 1, 0.11);
271 AnalysisDataTestInputFrame &frame2 = data_.addFrame(2.0);
272 frame2.addPointSetWithValues(0, 0, 1.0, 1.0, 1.0);
273 frame2.addPointSetWithValues(0, 0, 0.1, 2.1);
274 frame2.addPointSetWithValues(1, 1, 1.01);
275 AnalysisDataTestInputFrame &frame3 = data_.addFrame(3.0);
276 frame3.addPointSetWithValues(0, 0, 2.0, 0.0, 0.0);
277 frame3.addPointSetWithValues(0, 1, 1.1);
281 AnalysisDataTestInput data_;
284 /********************************************************************
285 * Tests for gmx::AnalysisData that require data.
288 using gmx::test::AnalysisDataTestFixture;
290 class AnalysisDataTest : public AnalysisDataTestFixture
293 explicit AnalysisDataTest(const AnalysisDataTestInput &input)
300 ASSERT_NO_THROW_GMX(setupDataObject(input_, &data_));
303 void addStaticCheckerModule()
305 AnalysisDataTestFixture::addStaticCheckerModule(input_, &data_);
307 void addStaticParallelCheckerModule()
309 AnalysisDataTestFixture::addStaticParallelCheckerModule(input_, &data_);
311 void addStaticColumnCheckerModule(int firstColumn, int columnCount)
313 AnalysisDataTestFixture::addStaticColumnCheckerModule(
314 input_, firstColumn, columnCount, &data_);
316 void addStaticStorageCheckerModule(int storageCount)
318 AnalysisDataTestFixture::addStaticStorageCheckerModule(
319 input_, storageCount, &data_);
321 void presentAllData()
323 AnalysisDataTestFixture::presentAllData(input_, &data_);
326 const AnalysisDataTestInput &input_;
327 gmx::AnalysisData data_;
330 template <class InputDataType>
331 class AnalysisDataCommonTest : public AnalysisDataTest
334 AnalysisDataCommonTest() : AnalysisDataTest(InputDataType::get())
339 //! Test fixture for tests that are only applicable to simple data.
340 typedef AnalysisDataCommonTest<SimpleInputData> AnalysisDataSimpleTest;
341 //! Test fixture for tests that are only applicable to multipoint data.
342 typedef AnalysisDataCommonTest<MultipointInputData> AnalysisDataMultipointTest;
343 //! List of input data types for tests applicable to all types of data.
344 typedef ::testing::Types<SimpleInputData,
347 MultipointDataSetsInputData>
349 TYPED_TEST_CASE(AnalysisDataCommonTest, AllInputDataTypes);
352 * Tests that data is forwarded correctly to modules using two independent
355 TYPED_TEST(AnalysisDataCommonTest, CallsModuleCorrectly)
357 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
358 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
359 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
363 * Tests that data is forwarded correctly to modules when there are only
366 TYPED_TEST(AnalysisDataCommonTest, CallsParallelModuleCorrectly)
368 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
369 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
370 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
374 * Tests that data is forwarded correctly to modules when there are both
375 * parallel and serial modules.
377 TYPED_TEST(AnalysisDataCommonTest, CallsMixedModulesCorrectly)
379 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
380 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
381 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
385 * Tests that data is forwarded correctly to modules that are added using
387 * Uses two independent modules.
389 TYPED_TEST(AnalysisDataCommonTest, CallsColumnModuleCorrectly)
391 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(0, 2));
392 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(2, 1));
393 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
397 * Tests that data is forwarded correctly (in frame order) to modules when the
398 * data is added through multiple handles in non-increasing order.
400 TYPED_TEST(AnalysisDataCommonTest, CallsModuleCorrectlyWithOutOfOrderFrames)
402 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
403 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticParallelCheckerModule());
404 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticColumnCheckerModule(1, 2));
405 gmx::AnalysisDataHandle handle1;
406 gmx::AnalysisDataHandle handle2;
407 gmx::AnalysisDataParallelOptions options(2);
408 ASSERT_NO_THROW_GMX(handle1 = this->data_.startData(options));
409 ASSERT_NO_THROW_GMX(handle2 = this->data_.startData(options));
410 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 1, handle1));
411 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 0, handle2));
412 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentDataFrame(this->input_, 2, handle1));
413 ASSERT_NO_THROW_GMX(handle1.finishData());
414 ASSERT_NO_THROW_GMX(handle2.finishData());
418 * Tests that data can be accessed correctly from a module that requests
419 * storage using AbstractAnalysisData::requestStorage() with parameter -1.
421 TYPED_TEST(AnalysisDataCommonTest, FullStorageWorks)
423 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticStorageCheckerModule(-1));
424 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
428 * Tests that a data module can be added to an AnalysisData object after data
429 * has been added if all data is still available in storage.
431 TYPED_TEST(AnalysisDataCommonTest, CanAddModuleAfterStoredData)
433 ASSERT_TRUE(this->data_.requestStorage(-1));
435 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());
436 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticCheckerModule());
440 * Tests that data can be accessed correctly from a module that requests
441 * storage using AbstractAnalysisData::requestStorage() only for one frame.
443 TYPED_TEST(AnalysisDataCommonTest, LimitedStorageWorks)
445 ASSERT_NO_THROW_GMX(AnalysisDataTest::addStaticStorageCheckerModule(1));
446 ASSERT_NO_THROW_GMX(AnalysisDataTest::presentAllData());