2 * Note: this file was generated by the Gromacs sse4_1_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse4_1_single.h"
34 #include "kernelutil_x86_sse4_1_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_VF_sse4_1_single
38 * Electrostatics interaction: ReactionField
39 * VdW interaction: CubicSplineTable
40 * Geometry: Water4-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_VF_sse4_1_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
76 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
77 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
78 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
79 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
80 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
81 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
82 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
83 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
86 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
89 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
90 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
92 __m128i ifour = _mm_set1_epi32(4);
93 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
95 __m128 dummy_mask,cutoff_mask;
96 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
97 __m128 one = _mm_set1_ps(1.0);
98 __m128 two = _mm_set1_ps(2.0);
104 jindex = nlist->jindex;
106 shiftidx = nlist->shift;
108 shiftvec = fr->shift_vec[0];
109 fshift = fr->fshift[0];
110 facel = _mm_set1_ps(fr->epsfac);
111 charge = mdatoms->chargeA;
112 krf = _mm_set1_ps(fr->ic->k_rf);
113 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
114 crf = _mm_set1_ps(fr->ic->c_rf);
115 nvdwtype = fr->ntype;
117 vdwtype = mdatoms->typeA;
119 vftab = kernel_data->table_vdw->data;
120 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
122 /* Setup water-specific parameters */
123 inr = nlist->iinr[0];
124 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
125 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
126 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
127 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
129 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
130 rcutoff_scalar = fr->rcoulomb;
131 rcutoff = _mm_set1_ps(rcutoff_scalar);
132 rcutoff2 = _mm_mul_ps(rcutoff,rcutoff);
134 /* Avoid stupid compiler warnings */
135 jnrA = jnrB = jnrC = jnrD = 0;
144 for(iidx=0;iidx<4*DIM;iidx++)
149 /* Start outer loop over neighborlists */
150 for(iidx=0; iidx<nri; iidx++)
152 /* Load shift vector for this list */
153 i_shift_offset = DIM*shiftidx[iidx];
155 /* Load limits for loop over neighbors */
156 j_index_start = jindex[iidx];
157 j_index_end = jindex[iidx+1];
159 /* Get outer coordinate index */
161 i_coord_offset = DIM*inr;
163 /* Load i particle coords and add shift vector */
164 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
165 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
167 fix0 = _mm_setzero_ps();
168 fiy0 = _mm_setzero_ps();
169 fiz0 = _mm_setzero_ps();
170 fix1 = _mm_setzero_ps();
171 fiy1 = _mm_setzero_ps();
172 fiz1 = _mm_setzero_ps();
173 fix2 = _mm_setzero_ps();
174 fiy2 = _mm_setzero_ps();
175 fiz2 = _mm_setzero_ps();
176 fix3 = _mm_setzero_ps();
177 fiy3 = _mm_setzero_ps();
178 fiz3 = _mm_setzero_ps();
180 /* Reset potential sums */
181 velecsum = _mm_setzero_ps();
182 vvdwsum = _mm_setzero_ps();
184 /* Start inner kernel loop */
185 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
188 /* Get j neighbor index, and coordinate index */
193 j_coord_offsetA = DIM*jnrA;
194 j_coord_offsetB = DIM*jnrB;
195 j_coord_offsetC = DIM*jnrC;
196 j_coord_offsetD = DIM*jnrD;
198 /* load j atom coordinates */
199 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
200 x+j_coord_offsetC,x+j_coord_offsetD,
203 /* Calculate displacement vector */
204 dx00 = _mm_sub_ps(ix0,jx0);
205 dy00 = _mm_sub_ps(iy0,jy0);
206 dz00 = _mm_sub_ps(iz0,jz0);
207 dx10 = _mm_sub_ps(ix1,jx0);
208 dy10 = _mm_sub_ps(iy1,jy0);
209 dz10 = _mm_sub_ps(iz1,jz0);
210 dx20 = _mm_sub_ps(ix2,jx0);
211 dy20 = _mm_sub_ps(iy2,jy0);
212 dz20 = _mm_sub_ps(iz2,jz0);
213 dx30 = _mm_sub_ps(ix3,jx0);
214 dy30 = _mm_sub_ps(iy3,jy0);
215 dz30 = _mm_sub_ps(iz3,jz0);
217 /* Calculate squared distance and things based on it */
218 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
219 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
220 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
221 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
223 rinv00 = gmx_mm_invsqrt_ps(rsq00);
224 rinv10 = gmx_mm_invsqrt_ps(rsq10);
225 rinv20 = gmx_mm_invsqrt_ps(rsq20);
226 rinv30 = gmx_mm_invsqrt_ps(rsq30);
228 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
229 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
230 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
232 /* Load parameters for j particles */
233 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
234 charge+jnrC+0,charge+jnrD+0);
235 vdwjidx0A = 2*vdwtype[jnrA+0];
236 vdwjidx0B = 2*vdwtype[jnrB+0];
237 vdwjidx0C = 2*vdwtype[jnrC+0];
238 vdwjidx0D = 2*vdwtype[jnrD+0];
240 fjx0 = _mm_setzero_ps();
241 fjy0 = _mm_setzero_ps();
242 fjz0 = _mm_setzero_ps();
244 /**************************
245 * CALCULATE INTERACTIONS *
246 **************************/
248 r00 = _mm_mul_ps(rsq00,rinv00);
250 /* Compute parameters for interactions between i and j atoms */
251 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
252 vdwparam+vdwioffset0+vdwjidx0B,
253 vdwparam+vdwioffset0+vdwjidx0C,
254 vdwparam+vdwioffset0+vdwjidx0D,
257 /* Calculate table index by multiplying r with table scale and truncate to integer */
258 rt = _mm_mul_ps(r00,vftabscale);
259 vfitab = _mm_cvttps_epi32(rt);
260 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
261 vfitab = _mm_slli_epi32(vfitab,3);
263 /* CUBIC SPLINE TABLE DISPERSION */
264 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
265 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
266 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
267 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
268 _MM_TRANSPOSE4_PS(Y,F,G,H);
269 Heps = _mm_mul_ps(vfeps,H);
270 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
271 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
272 vvdw6 = _mm_mul_ps(c6_00,VV);
273 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
274 fvdw6 = _mm_mul_ps(c6_00,FF);
276 /* CUBIC SPLINE TABLE REPULSION */
277 vfitab = _mm_add_epi32(vfitab,ifour);
278 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
279 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
280 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
281 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
282 _MM_TRANSPOSE4_PS(Y,F,G,H);
283 Heps = _mm_mul_ps(vfeps,H);
284 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
285 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
286 vvdw12 = _mm_mul_ps(c12_00,VV);
287 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
288 fvdw12 = _mm_mul_ps(c12_00,FF);
289 vvdw = _mm_add_ps(vvdw12,vvdw6);
290 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
292 /* Update potential sum for this i atom from the interaction with this j atom. */
293 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
297 /* Calculate temporary vectorial force */
298 tx = _mm_mul_ps(fscal,dx00);
299 ty = _mm_mul_ps(fscal,dy00);
300 tz = _mm_mul_ps(fscal,dz00);
302 /* Update vectorial force */
303 fix0 = _mm_add_ps(fix0,tx);
304 fiy0 = _mm_add_ps(fiy0,ty);
305 fiz0 = _mm_add_ps(fiz0,tz);
307 fjx0 = _mm_add_ps(fjx0,tx);
308 fjy0 = _mm_add_ps(fjy0,ty);
309 fjz0 = _mm_add_ps(fjz0,tz);
311 /**************************
312 * CALCULATE INTERACTIONS *
313 **************************/
315 if (gmx_mm_any_lt(rsq10,rcutoff2))
318 /* Compute parameters for interactions between i and j atoms */
319 qq10 = _mm_mul_ps(iq1,jq0);
321 /* REACTION-FIELD ELECTROSTATICS */
322 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_add_ps(rinv10,_mm_mul_ps(krf,rsq10)),crf));
323 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
325 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
327 /* Update potential sum for this i atom from the interaction with this j atom. */
328 velec = _mm_and_ps(velec,cutoff_mask);
329 velecsum = _mm_add_ps(velecsum,velec);
333 fscal = _mm_and_ps(fscal,cutoff_mask);
335 /* Calculate temporary vectorial force */
336 tx = _mm_mul_ps(fscal,dx10);
337 ty = _mm_mul_ps(fscal,dy10);
338 tz = _mm_mul_ps(fscal,dz10);
340 /* Update vectorial force */
341 fix1 = _mm_add_ps(fix1,tx);
342 fiy1 = _mm_add_ps(fiy1,ty);
343 fiz1 = _mm_add_ps(fiz1,tz);
345 fjx0 = _mm_add_ps(fjx0,tx);
346 fjy0 = _mm_add_ps(fjy0,ty);
347 fjz0 = _mm_add_ps(fjz0,tz);
351 /**************************
352 * CALCULATE INTERACTIONS *
353 **************************/
355 if (gmx_mm_any_lt(rsq20,rcutoff2))
358 /* Compute parameters for interactions between i and j atoms */
359 qq20 = _mm_mul_ps(iq2,jq0);
361 /* REACTION-FIELD ELECTROSTATICS */
362 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_add_ps(rinv20,_mm_mul_ps(krf,rsq20)),crf));
363 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
365 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
367 /* Update potential sum for this i atom from the interaction with this j atom. */
368 velec = _mm_and_ps(velec,cutoff_mask);
369 velecsum = _mm_add_ps(velecsum,velec);
373 fscal = _mm_and_ps(fscal,cutoff_mask);
375 /* Calculate temporary vectorial force */
376 tx = _mm_mul_ps(fscal,dx20);
377 ty = _mm_mul_ps(fscal,dy20);
378 tz = _mm_mul_ps(fscal,dz20);
380 /* Update vectorial force */
381 fix2 = _mm_add_ps(fix2,tx);
382 fiy2 = _mm_add_ps(fiy2,ty);
383 fiz2 = _mm_add_ps(fiz2,tz);
385 fjx0 = _mm_add_ps(fjx0,tx);
386 fjy0 = _mm_add_ps(fjy0,ty);
387 fjz0 = _mm_add_ps(fjz0,tz);
391 /**************************
392 * CALCULATE INTERACTIONS *
393 **************************/
395 if (gmx_mm_any_lt(rsq30,rcutoff2))
398 /* Compute parameters for interactions between i and j atoms */
399 qq30 = _mm_mul_ps(iq3,jq0);
401 /* REACTION-FIELD ELECTROSTATICS */
402 velec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_add_ps(rinv30,_mm_mul_ps(krf,rsq30)),crf));
403 felec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_mul_ps(rinv30,rinvsq30),krf2));
405 cutoff_mask = _mm_cmplt_ps(rsq30,rcutoff2);
407 /* Update potential sum for this i atom from the interaction with this j atom. */
408 velec = _mm_and_ps(velec,cutoff_mask);
409 velecsum = _mm_add_ps(velecsum,velec);
413 fscal = _mm_and_ps(fscal,cutoff_mask);
415 /* Calculate temporary vectorial force */
416 tx = _mm_mul_ps(fscal,dx30);
417 ty = _mm_mul_ps(fscal,dy30);
418 tz = _mm_mul_ps(fscal,dz30);
420 /* Update vectorial force */
421 fix3 = _mm_add_ps(fix3,tx);
422 fiy3 = _mm_add_ps(fiy3,ty);
423 fiz3 = _mm_add_ps(fiz3,tz);
425 fjx0 = _mm_add_ps(fjx0,tx);
426 fjy0 = _mm_add_ps(fjy0,ty);
427 fjz0 = _mm_add_ps(fjz0,tz);
431 fjptrA = f+j_coord_offsetA;
432 fjptrB = f+j_coord_offsetB;
433 fjptrC = f+j_coord_offsetC;
434 fjptrD = f+j_coord_offsetD;
436 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
438 /* Inner loop uses 164 flops */
444 /* Get j neighbor index, and coordinate index */
445 jnrlistA = jjnr[jidx];
446 jnrlistB = jjnr[jidx+1];
447 jnrlistC = jjnr[jidx+2];
448 jnrlistD = jjnr[jidx+3];
449 /* Sign of each element will be negative for non-real atoms.
450 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
451 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
453 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
454 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
455 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
456 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
457 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
458 j_coord_offsetA = DIM*jnrA;
459 j_coord_offsetB = DIM*jnrB;
460 j_coord_offsetC = DIM*jnrC;
461 j_coord_offsetD = DIM*jnrD;
463 /* load j atom coordinates */
464 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
465 x+j_coord_offsetC,x+j_coord_offsetD,
468 /* Calculate displacement vector */
469 dx00 = _mm_sub_ps(ix0,jx0);
470 dy00 = _mm_sub_ps(iy0,jy0);
471 dz00 = _mm_sub_ps(iz0,jz0);
472 dx10 = _mm_sub_ps(ix1,jx0);
473 dy10 = _mm_sub_ps(iy1,jy0);
474 dz10 = _mm_sub_ps(iz1,jz0);
475 dx20 = _mm_sub_ps(ix2,jx0);
476 dy20 = _mm_sub_ps(iy2,jy0);
477 dz20 = _mm_sub_ps(iz2,jz0);
478 dx30 = _mm_sub_ps(ix3,jx0);
479 dy30 = _mm_sub_ps(iy3,jy0);
480 dz30 = _mm_sub_ps(iz3,jz0);
482 /* Calculate squared distance and things based on it */
483 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
484 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
485 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
486 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
488 rinv00 = gmx_mm_invsqrt_ps(rsq00);
489 rinv10 = gmx_mm_invsqrt_ps(rsq10);
490 rinv20 = gmx_mm_invsqrt_ps(rsq20);
491 rinv30 = gmx_mm_invsqrt_ps(rsq30);
493 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
494 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
495 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
497 /* Load parameters for j particles */
498 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
499 charge+jnrC+0,charge+jnrD+0);
500 vdwjidx0A = 2*vdwtype[jnrA+0];
501 vdwjidx0B = 2*vdwtype[jnrB+0];
502 vdwjidx0C = 2*vdwtype[jnrC+0];
503 vdwjidx0D = 2*vdwtype[jnrD+0];
505 fjx0 = _mm_setzero_ps();
506 fjy0 = _mm_setzero_ps();
507 fjz0 = _mm_setzero_ps();
509 /**************************
510 * CALCULATE INTERACTIONS *
511 **************************/
513 r00 = _mm_mul_ps(rsq00,rinv00);
514 r00 = _mm_andnot_ps(dummy_mask,r00);
516 /* Compute parameters for interactions between i and j atoms */
517 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
518 vdwparam+vdwioffset0+vdwjidx0B,
519 vdwparam+vdwioffset0+vdwjidx0C,
520 vdwparam+vdwioffset0+vdwjidx0D,
523 /* Calculate table index by multiplying r with table scale and truncate to integer */
524 rt = _mm_mul_ps(r00,vftabscale);
525 vfitab = _mm_cvttps_epi32(rt);
526 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
527 vfitab = _mm_slli_epi32(vfitab,3);
529 /* CUBIC SPLINE TABLE DISPERSION */
530 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
531 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
532 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
533 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
534 _MM_TRANSPOSE4_PS(Y,F,G,H);
535 Heps = _mm_mul_ps(vfeps,H);
536 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
537 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
538 vvdw6 = _mm_mul_ps(c6_00,VV);
539 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
540 fvdw6 = _mm_mul_ps(c6_00,FF);
542 /* CUBIC SPLINE TABLE REPULSION */
543 vfitab = _mm_add_epi32(vfitab,ifour);
544 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
545 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
546 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
547 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
548 _MM_TRANSPOSE4_PS(Y,F,G,H);
549 Heps = _mm_mul_ps(vfeps,H);
550 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
551 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
552 vvdw12 = _mm_mul_ps(c12_00,VV);
553 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
554 fvdw12 = _mm_mul_ps(c12_00,FF);
555 vvdw = _mm_add_ps(vvdw12,vvdw6);
556 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
558 /* Update potential sum for this i atom from the interaction with this j atom. */
559 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
560 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
564 fscal = _mm_andnot_ps(dummy_mask,fscal);
566 /* Calculate temporary vectorial force */
567 tx = _mm_mul_ps(fscal,dx00);
568 ty = _mm_mul_ps(fscal,dy00);
569 tz = _mm_mul_ps(fscal,dz00);
571 /* Update vectorial force */
572 fix0 = _mm_add_ps(fix0,tx);
573 fiy0 = _mm_add_ps(fiy0,ty);
574 fiz0 = _mm_add_ps(fiz0,tz);
576 fjx0 = _mm_add_ps(fjx0,tx);
577 fjy0 = _mm_add_ps(fjy0,ty);
578 fjz0 = _mm_add_ps(fjz0,tz);
580 /**************************
581 * CALCULATE INTERACTIONS *
582 **************************/
584 if (gmx_mm_any_lt(rsq10,rcutoff2))
587 /* Compute parameters for interactions between i and j atoms */
588 qq10 = _mm_mul_ps(iq1,jq0);
590 /* REACTION-FIELD ELECTROSTATICS */
591 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_add_ps(rinv10,_mm_mul_ps(krf,rsq10)),crf));
592 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
594 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
596 /* Update potential sum for this i atom from the interaction with this j atom. */
597 velec = _mm_and_ps(velec,cutoff_mask);
598 velec = _mm_andnot_ps(dummy_mask,velec);
599 velecsum = _mm_add_ps(velecsum,velec);
603 fscal = _mm_and_ps(fscal,cutoff_mask);
605 fscal = _mm_andnot_ps(dummy_mask,fscal);
607 /* Calculate temporary vectorial force */
608 tx = _mm_mul_ps(fscal,dx10);
609 ty = _mm_mul_ps(fscal,dy10);
610 tz = _mm_mul_ps(fscal,dz10);
612 /* Update vectorial force */
613 fix1 = _mm_add_ps(fix1,tx);
614 fiy1 = _mm_add_ps(fiy1,ty);
615 fiz1 = _mm_add_ps(fiz1,tz);
617 fjx0 = _mm_add_ps(fjx0,tx);
618 fjy0 = _mm_add_ps(fjy0,ty);
619 fjz0 = _mm_add_ps(fjz0,tz);
623 /**************************
624 * CALCULATE INTERACTIONS *
625 **************************/
627 if (gmx_mm_any_lt(rsq20,rcutoff2))
630 /* Compute parameters for interactions between i and j atoms */
631 qq20 = _mm_mul_ps(iq2,jq0);
633 /* REACTION-FIELD ELECTROSTATICS */
634 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_add_ps(rinv20,_mm_mul_ps(krf,rsq20)),crf));
635 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
637 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
639 /* Update potential sum for this i atom from the interaction with this j atom. */
640 velec = _mm_and_ps(velec,cutoff_mask);
641 velec = _mm_andnot_ps(dummy_mask,velec);
642 velecsum = _mm_add_ps(velecsum,velec);
646 fscal = _mm_and_ps(fscal,cutoff_mask);
648 fscal = _mm_andnot_ps(dummy_mask,fscal);
650 /* Calculate temporary vectorial force */
651 tx = _mm_mul_ps(fscal,dx20);
652 ty = _mm_mul_ps(fscal,dy20);
653 tz = _mm_mul_ps(fscal,dz20);
655 /* Update vectorial force */
656 fix2 = _mm_add_ps(fix2,tx);
657 fiy2 = _mm_add_ps(fiy2,ty);
658 fiz2 = _mm_add_ps(fiz2,tz);
660 fjx0 = _mm_add_ps(fjx0,tx);
661 fjy0 = _mm_add_ps(fjy0,ty);
662 fjz0 = _mm_add_ps(fjz0,tz);
666 /**************************
667 * CALCULATE INTERACTIONS *
668 **************************/
670 if (gmx_mm_any_lt(rsq30,rcutoff2))
673 /* Compute parameters for interactions between i and j atoms */
674 qq30 = _mm_mul_ps(iq3,jq0);
676 /* REACTION-FIELD ELECTROSTATICS */
677 velec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_add_ps(rinv30,_mm_mul_ps(krf,rsq30)),crf));
678 felec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_mul_ps(rinv30,rinvsq30),krf2));
680 cutoff_mask = _mm_cmplt_ps(rsq30,rcutoff2);
682 /* Update potential sum for this i atom from the interaction with this j atom. */
683 velec = _mm_and_ps(velec,cutoff_mask);
684 velec = _mm_andnot_ps(dummy_mask,velec);
685 velecsum = _mm_add_ps(velecsum,velec);
689 fscal = _mm_and_ps(fscal,cutoff_mask);
691 fscal = _mm_andnot_ps(dummy_mask,fscal);
693 /* Calculate temporary vectorial force */
694 tx = _mm_mul_ps(fscal,dx30);
695 ty = _mm_mul_ps(fscal,dy30);
696 tz = _mm_mul_ps(fscal,dz30);
698 /* Update vectorial force */
699 fix3 = _mm_add_ps(fix3,tx);
700 fiy3 = _mm_add_ps(fiy3,ty);
701 fiz3 = _mm_add_ps(fiz3,tz);
703 fjx0 = _mm_add_ps(fjx0,tx);
704 fjy0 = _mm_add_ps(fjy0,ty);
705 fjz0 = _mm_add_ps(fjz0,tz);
709 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
710 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
711 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
712 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
714 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
716 /* Inner loop uses 165 flops */
719 /* End of innermost loop */
721 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
722 f+i_coord_offset,fshift+i_shift_offset);
725 /* Update potential energies */
726 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
727 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
729 /* Increment number of inner iterations */
730 inneriter += j_index_end - j_index_start;
732 /* Outer loop uses 26 flops */
735 /* Increment number of outer iterations */
738 /* Update outer/inner flops */
740 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*165);
743 * Gromacs nonbonded kernel: nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_F_sse4_1_single
744 * Electrostatics interaction: ReactionField
745 * VdW interaction: CubicSplineTable
746 * Geometry: Water4-Particle
747 * Calculate force/pot: Force
750 nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_F_sse4_1_single
751 (t_nblist * gmx_restrict nlist,
752 rvec * gmx_restrict xx,
753 rvec * gmx_restrict ff,
754 t_forcerec * gmx_restrict fr,
755 t_mdatoms * gmx_restrict mdatoms,
756 nb_kernel_data_t * gmx_restrict kernel_data,
757 t_nrnb * gmx_restrict nrnb)
759 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
760 * just 0 for non-waters.
761 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
762 * jnr indices corresponding to data put in the four positions in the SIMD register.
764 int i_shift_offset,i_coord_offset,outeriter,inneriter;
765 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
766 int jnrA,jnrB,jnrC,jnrD;
767 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
768 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
769 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
771 real *shiftvec,*fshift,*x,*f;
772 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
774 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
776 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
778 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
780 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
782 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
783 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
784 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
785 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
786 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
787 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
788 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
789 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
792 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
795 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
796 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
798 __m128i ifour = _mm_set1_epi32(4);
799 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
801 __m128 dummy_mask,cutoff_mask;
802 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
803 __m128 one = _mm_set1_ps(1.0);
804 __m128 two = _mm_set1_ps(2.0);
810 jindex = nlist->jindex;
812 shiftidx = nlist->shift;
814 shiftvec = fr->shift_vec[0];
815 fshift = fr->fshift[0];
816 facel = _mm_set1_ps(fr->epsfac);
817 charge = mdatoms->chargeA;
818 krf = _mm_set1_ps(fr->ic->k_rf);
819 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
820 crf = _mm_set1_ps(fr->ic->c_rf);
821 nvdwtype = fr->ntype;
823 vdwtype = mdatoms->typeA;
825 vftab = kernel_data->table_vdw->data;
826 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
828 /* Setup water-specific parameters */
829 inr = nlist->iinr[0];
830 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
831 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
832 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
833 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
835 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
836 rcutoff_scalar = fr->rcoulomb;
837 rcutoff = _mm_set1_ps(rcutoff_scalar);
838 rcutoff2 = _mm_mul_ps(rcutoff,rcutoff);
840 /* Avoid stupid compiler warnings */
841 jnrA = jnrB = jnrC = jnrD = 0;
850 for(iidx=0;iidx<4*DIM;iidx++)
855 /* Start outer loop over neighborlists */
856 for(iidx=0; iidx<nri; iidx++)
858 /* Load shift vector for this list */
859 i_shift_offset = DIM*shiftidx[iidx];
861 /* Load limits for loop over neighbors */
862 j_index_start = jindex[iidx];
863 j_index_end = jindex[iidx+1];
865 /* Get outer coordinate index */
867 i_coord_offset = DIM*inr;
869 /* Load i particle coords and add shift vector */
870 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
871 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
873 fix0 = _mm_setzero_ps();
874 fiy0 = _mm_setzero_ps();
875 fiz0 = _mm_setzero_ps();
876 fix1 = _mm_setzero_ps();
877 fiy1 = _mm_setzero_ps();
878 fiz1 = _mm_setzero_ps();
879 fix2 = _mm_setzero_ps();
880 fiy2 = _mm_setzero_ps();
881 fiz2 = _mm_setzero_ps();
882 fix3 = _mm_setzero_ps();
883 fiy3 = _mm_setzero_ps();
884 fiz3 = _mm_setzero_ps();
886 /* Start inner kernel loop */
887 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
890 /* Get j neighbor index, and coordinate index */
895 j_coord_offsetA = DIM*jnrA;
896 j_coord_offsetB = DIM*jnrB;
897 j_coord_offsetC = DIM*jnrC;
898 j_coord_offsetD = DIM*jnrD;
900 /* load j atom coordinates */
901 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
902 x+j_coord_offsetC,x+j_coord_offsetD,
905 /* Calculate displacement vector */
906 dx00 = _mm_sub_ps(ix0,jx0);
907 dy00 = _mm_sub_ps(iy0,jy0);
908 dz00 = _mm_sub_ps(iz0,jz0);
909 dx10 = _mm_sub_ps(ix1,jx0);
910 dy10 = _mm_sub_ps(iy1,jy0);
911 dz10 = _mm_sub_ps(iz1,jz0);
912 dx20 = _mm_sub_ps(ix2,jx0);
913 dy20 = _mm_sub_ps(iy2,jy0);
914 dz20 = _mm_sub_ps(iz2,jz0);
915 dx30 = _mm_sub_ps(ix3,jx0);
916 dy30 = _mm_sub_ps(iy3,jy0);
917 dz30 = _mm_sub_ps(iz3,jz0);
919 /* Calculate squared distance and things based on it */
920 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
921 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
922 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
923 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
925 rinv00 = gmx_mm_invsqrt_ps(rsq00);
926 rinv10 = gmx_mm_invsqrt_ps(rsq10);
927 rinv20 = gmx_mm_invsqrt_ps(rsq20);
928 rinv30 = gmx_mm_invsqrt_ps(rsq30);
930 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
931 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
932 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
934 /* Load parameters for j particles */
935 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
936 charge+jnrC+0,charge+jnrD+0);
937 vdwjidx0A = 2*vdwtype[jnrA+0];
938 vdwjidx0B = 2*vdwtype[jnrB+0];
939 vdwjidx0C = 2*vdwtype[jnrC+0];
940 vdwjidx0D = 2*vdwtype[jnrD+0];
942 fjx0 = _mm_setzero_ps();
943 fjy0 = _mm_setzero_ps();
944 fjz0 = _mm_setzero_ps();
946 /**************************
947 * CALCULATE INTERACTIONS *
948 **************************/
950 r00 = _mm_mul_ps(rsq00,rinv00);
952 /* Compute parameters for interactions between i and j atoms */
953 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
954 vdwparam+vdwioffset0+vdwjidx0B,
955 vdwparam+vdwioffset0+vdwjidx0C,
956 vdwparam+vdwioffset0+vdwjidx0D,
959 /* Calculate table index by multiplying r with table scale and truncate to integer */
960 rt = _mm_mul_ps(r00,vftabscale);
961 vfitab = _mm_cvttps_epi32(rt);
962 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
963 vfitab = _mm_slli_epi32(vfitab,3);
965 /* CUBIC SPLINE TABLE DISPERSION */
966 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
967 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
968 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
969 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
970 _MM_TRANSPOSE4_PS(Y,F,G,H);
971 Heps = _mm_mul_ps(vfeps,H);
972 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
973 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
974 fvdw6 = _mm_mul_ps(c6_00,FF);
976 /* CUBIC SPLINE TABLE REPULSION */
977 vfitab = _mm_add_epi32(vfitab,ifour);
978 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
979 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
980 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
981 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
982 _MM_TRANSPOSE4_PS(Y,F,G,H);
983 Heps = _mm_mul_ps(vfeps,H);
984 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
985 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
986 fvdw12 = _mm_mul_ps(c12_00,FF);
987 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
991 /* Calculate temporary vectorial force */
992 tx = _mm_mul_ps(fscal,dx00);
993 ty = _mm_mul_ps(fscal,dy00);
994 tz = _mm_mul_ps(fscal,dz00);
996 /* Update vectorial force */
997 fix0 = _mm_add_ps(fix0,tx);
998 fiy0 = _mm_add_ps(fiy0,ty);
999 fiz0 = _mm_add_ps(fiz0,tz);
1001 fjx0 = _mm_add_ps(fjx0,tx);
1002 fjy0 = _mm_add_ps(fjy0,ty);
1003 fjz0 = _mm_add_ps(fjz0,tz);
1005 /**************************
1006 * CALCULATE INTERACTIONS *
1007 **************************/
1009 if (gmx_mm_any_lt(rsq10,rcutoff2))
1012 /* Compute parameters for interactions between i and j atoms */
1013 qq10 = _mm_mul_ps(iq1,jq0);
1015 /* REACTION-FIELD ELECTROSTATICS */
1016 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
1018 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
1022 fscal = _mm_and_ps(fscal,cutoff_mask);
1024 /* Calculate temporary vectorial force */
1025 tx = _mm_mul_ps(fscal,dx10);
1026 ty = _mm_mul_ps(fscal,dy10);
1027 tz = _mm_mul_ps(fscal,dz10);
1029 /* Update vectorial force */
1030 fix1 = _mm_add_ps(fix1,tx);
1031 fiy1 = _mm_add_ps(fiy1,ty);
1032 fiz1 = _mm_add_ps(fiz1,tz);
1034 fjx0 = _mm_add_ps(fjx0,tx);
1035 fjy0 = _mm_add_ps(fjy0,ty);
1036 fjz0 = _mm_add_ps(fjz0,tz);
1040 /**************************
1041 * CALCULATE INTERACTIONS *
1042 **************************/
1044 if (gmx_mm_any_lt(rsq20,rcutoff2))
1047 /* Compute parameters for interactions between i and j atoms */
1048 qq20 = _mm_mul_ps(iq2,jq0);
1050 /* REACTION-FIELD ELECTROSTATICS */
1051 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
1053 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
1057 fscal = _mm_and_ps(fscal,cutoff_mask);
1059 /* Calculate temporary vectorial force */
1060 tx = _mm_mul_ps(fscal,dx20);
1061 ty = _mm_mul_ps(fscal,dy20);
1062 tz = _mm_mul_ps(fscal,dz20);
1064 /* Update vectorial force */
1065 fix2 = _mm_add_ps(fix2,tx);
1066 fiy2 = _mm_add_ps(fiy2,ty);
1067 fiz2 = _mm_add_ps(fiz2,tz);
1069 fjx0 = _mm_add_ps(fjx0,tx);
1070 fjy0 = _mm_add_ps(fjy0,ty);
1071 fjz0 = _mm_add_ps(fjz0,tz);
1075 /**************************
1076 * CALCULATE INTERACTIONS *
1077 **************************/
1079 if (gmx_mm_any_lt(rsq30,rcutoff2))
1082 /* Compute parameters for interactions between i and j atoms */
1083 qq30 = _mm_mul_ps(iq3,jq0);
1085 /* REACTION-FIELD ELECTROSTATICS */
1086 felec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_mul_ps(rinv30,rinvsq30),krf2));
1088 cutoff_mask = _mm_cmplt_ps(rsq30,rcutoff2);
1092 fscal = _mm_and_ps(fscal,cutoff_mask);
1094 /* Calculate temporary vectorial force */
1095 tx = _mm_mul_ps(fscal,dx30);
1096 ty = _mm_mul_ps(fscal,dy30);
1097 tz = _mm_mul_ps(fscal,dz30);
1099 /* Update vectorial force */
1100 fix3 = _mm_add_ps(fix3,tx);
1101 fiy3 = _mm_add_ps(fiy3,ty);
1102 fiz3 = _mm_add_ps(fiz3,tz);
1104 fjx0 = _mm_add_ps(fjx0,tx);
1105 fjy0 = _mm_add_ps(fjy0,ty);
1106 fjz0 = _mm_add_ps(fjz0,tz);
1110 fjptrA = f+j_coord_offsetA;
1111 fjptrB = f+j_coord_offsetB;
1112 fjptrC = f+j_coord_offsetC;
1113 fjptrD = f+j_coord_offsetD;
1115 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1117 /* Inner loop uses 138 flops */
1120 if(jidx<j_index_end)
1123 /* Get j neighbor index, and coordinate index */
1124 jnrlistA = jjnr[jidx];
1125 jnrlistB = jjnr[jidx+1];
1126 jnrlistC = jjnr[jidx+2];
1127 jnrlistD = jjnr[jidx+3];
1128 /* Sign of each element will be negative for non-real atoms.
1129 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1130 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1132 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1133 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1134 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1135 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1136 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1137 j_coord_offsetA = DIM*jnrA;
1138 j_coord_offsetB = DIM*jnrB;
1139 j_coord_offsetC = DIM*jnrC;
1140 j_coord_offsetD = DIM*jnrD;
1142 /* load j atom coordinates */
1143 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1144 x+j_coord_offsetC,x+j_coord_offsetD,
1147 /* Calculate displacement vector */
1148 dx00 = _mm_sub_ps(ix0,jx0);
1149 dy00 = _mm_sub_ps(iy0,jy0);
1150 dz00 = _mm_sub_ps(iz0,jz0);
1151 dx10 = _mm_sub_ps(ix1,jx0);
1152 dy10 = _mm_sub_ps(iy1,jy0);
1153 dz10 = _mm_sub_ps(iz1,jz0);
1154 dx20 = _mm_sub_ps(ix2,jx0);
1155 dy20 = _mm_sub_ps(iy2,jy0);
1156 dz20 = _mm_sub_ps(iz2,jz0);
1157 dx30 = _mm_sub_ps(ix3,jx0);
1158 dy30 = _mm_sub_ps(iy3,jy0);
1159 dz30 = _mm_sub_ps(iz3,jz0);
1161 /* Calculate squared distance and things based on it */
1162 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1163 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1164 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1165 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1167 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1168 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1169 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1170 rinv30 = gmx_mm_invsqrt_ps(rsq30);
1172 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1173 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1174 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
1176 /* Load parameters for j particles */
1177 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1178 charge+jnrC+0,charge+jnrD+0);
1179 vdwjidx0A = 2*vdwtype[jnrA+0];
1180 vdwjidx0B = 2*vdwtype[jnrB+0];
1181 vdwjidx0C = 2*vdwtype[jnrC+0];
1182 vdwjidx0D = 2*vdwtype[jnrD+0];
1184 fjx0 = _mm_setzero_ps();
1185 fjy0 = _mm_setzero_ps();
1186 fjz0 = _mm_setzero_ps();
1188 /**************************
1189 * CALCULATE INTERACTIONS *
1190 **************************/
1192 r00 = _mm_mul_ps(rsq00,rinv00);
1193 r00 = _mm_andnot_ps(dummy_mask,r00);
1195 /* Compute parameters for interactions between i and j atoms */
1196 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1197 vdwparam+vdwioffset0+vdwjidx0B,
1198 vdwparam+vdwioffset0+vdwjidx0C,
1199 vdwparam+vdwioffset0+vdwjidx0D,
1202 /* Calculate table index by multiplying r with table scale and truncate to integer */
1203 rt = _mm_mul_ps(r00,vftabscale);
1204 vfitab = _mm_cvttps_epi32(rt);
1205 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1206 vfitab = _mm_slli_epi32(vfitab,3);
1208 /* CUBIC SPLINE TABLE DISPERSION */
1209 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1210 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1211 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1212 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1213 _MM_TRANSPOSE4_PS(Y,F,G,H);
1214 Heps = _mm_mul_ps(vfeps,H);
1215 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1216 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1217 fvdw6 = _mm_mul_ps(c6_00,FF);
1219 /* CUBIC SPLINE TABLE REPULSION */
1220 vfitab = _mm_add_epi32(vfitab,ifour);
1221 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1222 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1223 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1224 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1225 _MM_TRANSPOSE4_PS(Y,F,G,H);
1226 Heps = _mm_mul_ps(vfeps,H);
1227 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1228 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1229 fvdw12 = _mm_mul_ps(c12_00,FF);
1230 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1234 fscal = _mm_andnot_ps(dummy_mask,fscal);
1236 /* Calculate temporary vectorial force */
1237 tx = _mm_mul_ps(fscal,dx00);
1238 ty = _mm_mul_ps(fscal,dy00);
1239 tz = _mm_mul_ps(fscal,dz00);
1241 /* Update vectorial force */
1242 fix0 = _mm_add_ps(fix0,tx);
1243 fiy0 = _mm_add_ps(fiy0,ty);
1244 fiz0 = _mm_add_ps(fiz0,tz);
1246 fjx0 = _mm_add_ps(fjx0,tx);
1247 fjy0 = _mm_add_ps(fjy0,ty);
1248 fjz0 = _mm_add_ps(fjz0,tz);
1250 /**************************
1251 * CALCULATE INTERACTIONS *
1252 **************************/
1254 if (gmx_mm_any_lt(rsq10,rcutoff2))
1257 /* Compute parameters for interactions between i and j atoms */
1258 qq10 = _mm_mul_ps(iq1,jq0);
1260 /* REACTION-FIELD ELECTROSTATICS */
1261 felec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_mul_ps(rinv10,rinvsq10),krf2));
1263 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
1267 fscal = _mm_and_ps(fscal,cutoff_mask);
1269 fscal = _mm_andnot_ps(dummy_mask,fscal);
1271 /* Calculate temporary vectorial force */
1272 tx = _mm_mul_ps(fscal,dx10);
1273 ty = _mm_mul_ps(fscal,dy10);
1274 tz = _mm_mul_ps(fscal,dz10);
1276 /* Update vectorial force */
1277 fix1 = _mm_add_ps(fix1,tx);
1278 fiy1 = _mm_add_ps(fiy1,ty);
1279 fiz1 = _mm_add_ps(fiz1,tz);
1281 fjx0 = _mm_add_ps(fjx0,tx);
1282 fjy0 = _mm_add_ps(fjy0,ty);
1283 fjz0 = _mm_add_ps(fjz0,tz);
1287 /**************************
1288 * CALCULATE INTERACTIONS *
1289 **************************/
1291 if (gmx_mm_any_lt(rsq20,rcutoff2))
1294 /* Compute parameters for interactions between i and j atoms */
1295 qq20 = _mm_mul_ps(iq2,jq0);
1297 /* REACTION-FIELD ELECTROSTATICS */
1298 felec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_mul_ps(rinv20,rinvsq20),krf2));
1300 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
1304 fscal = _mm_and_ps(fscal,cutoff_mask);
1306 fscal = _mm_andnot_ps(dummy_mask,fscal);
1308 /* Calculate temporary vectorial force */
1309 tx = _mm_mul_ps(fscal,dx20);
1310 ty = _mm_mul_ps(fscal,dy20);
1311 tz = _mm_mul_ps(fscal,dz20);
1313 /* Update vectorial force */
1314 fix2 = _mm_add_ps(fix2,tx);
1315 fiy2 = _mm_add_ps(fiy2,ty);
1316 fiz2 = _mm_add_ps(fiz2,tz);
1318 fjx0 = _mm_add_ps(fjx0,tx);
1319 fjy0 = _mm_add_ps(fjy0,ty);
1320 fjz0 = _mm_add_ps(fjz0,tz);
1324 /**************************
1325 * CALCULATE INTERACTIONS *
1326 **************************/
1328 if (gmx_mm_any_lt(rsq30,rcutoff2))
1331 /* Compute parameters for interactions between i and j atoms */
1332 qq30 = _mm_mul_ps(iq3,jq0);
1334 /* REACTION-FIELD ELECTROSTATICS */
1335 felec = _mm_mul_ps(qq30,_mm_sub_ps(_mm_mul_ps(rinv30,rinvsq30),krf2));
1337 cutoff_mask = _mm_cmplt_ps(rsq30,rcutoff2);
1341 fscal = _mm_and_ps(fscal,cutoff_mask);
1343 fscal = _mm_andnot_ps(dummy_mask,fscal);
1345 /* Calculate temporary vectorial force */
1346 tx = _mm_mul_ps(fscal,dx30);
1347 ty = _mm_mul_ps(fscal,dy30);
1348 tz = _mm_mul_ps(fscal,dz30);
1350 /* Update vectorial force */
1351 fix3 = _mm_add_ps(fix3,tx);
1352 fiy3 = _mm_add_ps(fiy3,ty);
1353 fiz3 = _mm_add_ps(fiz3,tz);
1355 fjx0 = _mm_add_ps(fjx0,tx);
1356 fjy0 = _mm_add_ps(fjy0,ty);
1357 fjz0 = _mm_add_ps(fjz0,tz);
1361 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1362 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1363 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1364 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1366 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1368 /* Inner loop uses 139 flops */
1371 /* End of innermost loop */
1373 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1374 f+i_coord_offset,fshift+i_shift_offset);
1376 /* Increment number of inner iterations */
1377 inneriter += j_index_end - j_index_start;
1379 /* Outer loop uses 24 flops */
1382 /* Increment number of outer iterations */
1385 /* Update outer/inner flops */
1387 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*139);