2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwNone_GeomP1P1_VF_sse2_single
38 * Electrostatics interaction: ReactionField
39 * VdW interaction: None
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecRF_VdwNone_GeomP1P1_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
63 real shX,shY,shZ,rcutoff_scalar;
64 real *shiftvec,*fshift,*x,*f;
65 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
69 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
70 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
71 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
73 __m128 dummy_mask,cutoff_mask;
74 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
75 __m128 one = _mm_set1_ps(1.0);
76 __m128 two = _mm_set1_ps(2.0);
82 jindex = nlist->jindex;
84 shiftidx = nlist->shift;
86 shiftvec = fr->shift_vec[0];
87 fshift = fr->fshift[0];
88 facel = _mm_set1_ps(fr->epsfac);
89 charge = mdatoms->chargeA;
90 krf = _mm_set1_ps(fr->ic->k_rf);
91 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
92 crf = _mm_set1_ps(fr->ic->c_rf);
94 /* Avoid stupid compiler warnings */
95 jnrA = jnrB = jnrC = jnrD = 0;
104 /* Start outer loop over neighborlists */
105 for(iidx=0; iidx<nri; iidx++)
107 /* Load shift vector for this list */
108 i_shift_offset = DIM*shiftidx[iidx];
109 shX = shiftvec[i_shift_offset+XX];
110 shY = shiftvec[i_shift_offset+YY];
111 shZ = shiftvec[i_shift_offset+ZZ];
113 /* Load limits for loop over neighbors */
114 j_index_start = jindex[iidx];
115 j_index_end = jindex[iidx+1];
117 /* Get outer coordinate index */
119 i_coord_offset = DIM*inr;
121 /* Load i particle coords and add shift vector */
122 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
123 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
124 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
126 fix0 = _mm_setzero_ps();
127 fiy0 = _mm_setzero_ps();
128 fiz0 = _mm_setzero_ps();
130 /* Load parameters for i particles */
131 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
133 /* Reset potential sums */
134 velecsum = _mm_setzero_ps();
136 /* Start inner kernel loop */
137 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
140 /* Get j neighbor index, and coordinate index */
146 j_coord_offsetA = DIM*jnrA;
147 j_coord_offsetB = DIM*jnrB;
148 j_coord_offsetC = DIM*jnrC;
149 j_coord_offsetD = DIM*jnrD;
151 /* load j atom coordinates */
152 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
153 x+j_coord_offsetC,x+j_coord_offsetD,
156 /* Calculate displacement vector */
157 dx00 = _mm_sub_ps(ix0,jx0);
158 dy00 = _mm_sub_ps(iy0,jy0);
159 dz00 = _mm_sub_ps(iz0,jz0);
161 /* Calculate squared distance and things based on it */
162 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
164 rinv00 = gmx_mm_invsqrt_ps(rsq00);
166 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
168 /* Load parameters for j particles */
169 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
170 charge+jnrC+0,charge+jnrD+0);
172 /**************************
173 * CALCULATE INTERACTIONS *
174 **************************/
176 /* Compute parameters for interactions between i and j atoms */
177 qq00 = _mm_mul_ps(iq0,jq0);
179 /* REACTION-FIELD ELECTROSTATICS */
180 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
181 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
183 /* Update potential sum for this i atom from the interaction with this j atom. */
184 velecsum = _mm_add_ps(velecsum,velec);
188 /* Calculate temporary vectorial force */
189 tx = _mm_mul_ps(fscal,dx00);
190 ty = _mm_mul_ps(fscal,dy00);
191 tz = _mm_mul_ps(fscal,dz00);
193 /* Update vectorial force */
194 fix0 = _mm_add_ps(fix0,tx);
195 fiy0 = _mm_add_ps(fiy0,ty);
196 fiz0 = _mm_add_ps(fiz0,tz);
198 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
199 f+j_coord_offsetC,f+j_coord_offsetD,
202 /* Inner loop uses 32 flops */
208 /* Get j neighbor index, and coordinate index */
214 /* Sign of each element will be negative for non-real atoms.
215 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
216 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
218 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
219 jnrA = (jnrA>=0) ? jnrA : 0;
220 jnrB = (jnrB>=0) ? jnrB : 0;
221 jnrC = (jnrC>=0) ? jnrC : 0;
222 jnrD = (jnrD>=0) ? jnrD : 0;
224 j_coord_offsetA = DIM*jnrA;
225 j_coord_offsetB = DIM*jnrB;
226 j_coord_offsetC = DIM*jnrC;
227 j_coord_offsetD = DIM*jnrD;
229 /* load j atom coordinates */
230 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
231 x+j_coord_offsetC,x+j_coord_offsetD,
234 /* Calculate displacement vector */
235 dx00 = _mm_sub_ps(ix0,jx0);
236 dy00 = _mm_sub_ps(iy0,jy0);
237 dz00 = _mm_sub_ps(iz0,jz0);
239 /* Calculate squared distance and things based on it */
240 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
242 rinv00 = gmx_mm_invsqrt_ps(rsq00);
244 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
246 /* Load parameters for j particles */
247 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
248 charge+jnrC+0,charge+jnrD+0);
250 /**************************
251 * CALCULATE INTERACTIONS *
252 **************************/
254 /* Compute parameters for interactions between i and j atoms */
255 qq00 = _mm_mul_ps(iq0,jq0);
257 /* REACTION-FIELD ELECTROSTATICS */
258 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_add_ps(rinv00,_mm_mul_ps(krf,rsq00)),crf));
259 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
261 /* Update potential sum for this i atom from the interaction with this j atom. */
262 velec = _mm_andnot_ps(dummy_mask,velec);
263 velecsum = _mm_add_ps(velecsum,velec);
267 fscal = _mm_andnot_ps(dummy_mask,fscal);
269 /* Calculate temporary vectorial force */
270 tx = _mm_mul_ps(fscal,dx00);
271 ty = _mm_mul_ps(fscal,dy00);
272 tz = _mm_mul_ps(fscal,dz00);
274 /* Update vectorial force */
275 fix0 = _mm_add_ps(fix0,tx);
276 fiy0 = _mm_add_ps(fiy0,ty);
277 fiz0 = _mm_add_ps(fiz0,tz);
279 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
280 f+j_coord_offsetC,f+j_coord_offsetD,
283 /* Inner loop uses 32 flops */
286 /* End of innermost loop */
288 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
289 f+i_coord_offset,fshift+i_shift_offset);
292 /* Update potential energies */
293 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
295 /* Increment number of inner iterations */
296 inneriter += j_index_end - j_index_start;
298 /* Outer loop uses 11 flops */
301 /* Increment number of outer iterations */
304 /* Update outer/inner flops */
306 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*11 + inneriter*32);
309 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwNone_GeomP1P1_F_sse2_single
310 * Electrostatics interaction: ReactionField
311 * VdW interaction: None
312 * Geometry: Particle-Particle
313 * Calculate force/pot: Force
316 nb_kernel_ElecRF_VdwNone_GeomP1P1_F_sse2_single
317 (t_nblist * gmx_restrict nlist,
318 rvec * gmx_restrict xx,
319 rvec * gmx_restrict ff,
320 t_forcerec * gmx_restrict fr,
321 t_mdatoms * gmx_restrict mdatoms,
322 nb_kernel_data_t * gmx_restrict kernel_data,
323 t_nrnb * gmx_restrict nrnb)
325 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
326 * just 0 for non-waters.
327 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
328 * jnr indices corresponding to data put in the four positions in the SIMD register.
330 int i_shift_offset,i_coord_offset,outeriter,inneriter;
331 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
332 int jnrA,jnrB,jnrC,jnrD;
333 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
334 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
335 real shX,shY,shZ,rcutoff_scalar;
336 real *shiftvec,*fshift,*x,*f;
337 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
339 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
340 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
341 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
342 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
343 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
345 __m128 dummy_mask,cutoff_mask;
346 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
347 __m128 one = _mm_set1_ps(1.0);
348 __m128 two = _mm_set1_ps(2.0);
354 jindex = nlist->jindex;
356 shiftidx = nlist->shift;
358 shiftvec = fr->shift_vec[0];
359 fshift = fr->fshift[0];
360 facel = _mm_set1_ps(fr->epsfac);
361 charge = mdatoms->chargeA;
362 krf = _mm_set1_ps(fr->ic->k_rf);
363 krf2 = _mm_set1_ps(fr->ic->k_rf*2.0);
364 crf = _mm_set1_ps(fr->ic->c_rf);
366 /* Avoid stupid compiler warnings */
367 jnrA = jnrB = jnrC = jnrD = 0;
376 /* Start outer loop over neighborlists */
377 for(iidx=0; iidx<nri; iidx++)
379 /* Load shift vector for this list */
380 i_shift_offset = DIM*shiftidx[iidx];
381 shX = shiftvec[i_shift_offset+XX];
382 shY = shiftvec[i_shift_offset+YY];
383 shZ = shiftvec[i_shift_offset+ZZ];
385 /* Load limits for loop over neighbors */
386 j_index_start = jindex[iidx];
387 j_index_end = jindex[iidx+1];
389 /* Get outer coordinate index */
391 i_coord_offset = DIM*inr;
393 /* Load i particle coords and add shift vector */
394 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
395 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
396 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
398 fix0 = _mm_setzero_ps();
399 fiy0 = _mm_setzero_ps();
400 fiz0 = _mm_setzero_ps();
402 /* Load parameters for i particles */
403 iq0 = _mm_mul_ps(facel,_mm_load1_ps(charge+inr+0));
405 /* Start inner kernel loop */
406 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
409 /* Get j neighbor index, and coordinate index */
415 j_coord_offsetA = DIM*jnrA;
416 j_coord_offsetB = DIM*jnrB;
417 j_coord_offsetC = DIM*jnrC;
418 j_coord_offsetD = DIM*jnrD;
420 /* load j atom coordinates */
421 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
422 x+j_coord_offsetC,x+j_coord_offsetD,
425 /* Calculate displacement vector */
426 dx00 = _mm_sub_ps(ix0,jx0);
427 dy00 = _mm_sub_ps(iy0,jy0);
428 dz00 = _mm_sub_ps(iz0,jz0);
430 /* Calculate squared distance and things based on it */
431 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
433 rinv00 = gmx_mm_invsqrt_ps(rsq00);
435 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
437 /* Load parameters for j particles */
438 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
439 charge+jnrC+0,charge+jnrD+0);
441 /**************************
442 * CALCULATE INTERACTIONS *
443 **************************/
445 /* Compute parameters for interactions between i and j atoms */
446 qq00 = _mm_mul_ps(iq0,jq0);
448 /* REACTION-FIELD ELECTROSTATICS */
449 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
453 /* Calculate temporary vectorial force */
454 tx = _mm_mul_ps(fscal,dx00);
455 ty = _mm_mul_ps(fscal,dy00);
456 tz = _mm_mul_ps(fscal,dz00);
458 /* Update vectorial force */
459 fix0 = _mm_add_ps(fix0,tx);
460 fiy0 = _mm_add_ps(fiy0,ty);
461 fiz0 = _mm_add_ps(fiz0,tz);
463 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
464 f+j_coord_offsetC,f+j_coord_offsetD,
467 /* Inner loop uses 27 flops */
473 /* Get j neighbor index, and coordinate index */
479 /* Sign of each element will be negative for non-real atoms.
480 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
481 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
483 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
484 jnrA = (jnrA>=0) ? jnrA : 0;
485 jnrB = (jnrB>=0) ? jnrB : 0;
486 jnrC = (jnrC>=0) ? jnrC : 0;
487 jnrD = (jnrD>=0) ? jnrD : 0;
489 j_coord_offsetA = DIM*jnrA;
490 j_coord_offsetB = DIM*jnrB;
491 j_coord_offsetC = DIM*jnrC;
492 j_coord_offsetD = DIM*jnrD;
494 /* load j atom coordinates */
495 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
496 x+j_coord_offsetC,x+j_coord_offsetD,
499 /* Calculate displacement vector */
500 dx00 = _mm_sub_ps(ix0,jx0);
501 dy00 = _mm_sub_ps(iy0,jy0);
502 dz00 = _mm_sub_ps(iz0,jz0);
504 /* Calculate squared distance and things based on it */
505 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
507 rinv00 = gmx_mm_invsqrt_ps(rsq00);
509 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
511 /* Load parameters for j particles */
512 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
513 charge+jnrC+0,charge+jnrD+0);
515 /**************************
516 * CALCULATE INTERACTIONS *
517 **************************/
519 /* Compute parameters for interactions between i and j atoms */
520 qq00 = _mm_mul_ps(iq0,jq0);
522 /* REACTION-FIELD ELECTROSTATICS */
523 felec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_mul_ps(rinv00,rinvsq00),krf2));
527 fscal = _mm_andnot_ps(dummy_mask,fscal);
529 /* Calculate temporary vectorial force */
530 tx = _mm_mul_ps(fscal,dx00);
531 ty = _mm_mul_ps(fscal,dy00);
532 tz = _mm_mul_ps(fscal,dz00);
534 /* Update vectorial force */
535 fix0 = _mm_add_ps(fix0,tx);
536 fiy0 = _mm_add_ps(fiy0,ty);
537 fiz0 = _mm_add_ps(fiz0,tz);
539 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
540 f+j_coord_offsetC,f+j_coord_offsetD,
543 /* Inner loop uses 27 flops */
546 /* End of innermost loop */
548 gmx_mm_update_iforce_1atom_swizzle_ps(fix0,fiy0,fiz0,
549 f+i_coord_offset,fshift+i_shift_offset);
551 /* Increment number of inner iterations */
552 inneriter += j_index_end - j_index_start;
554 /* Outer loop uses 10 flops */
557 /* Increment number of outer iterations */
560 /* Update outer/inner flops */
562 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*10 + inneriter*27);