2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_VF_sse2_single
38 * Electrostatics interaction: Ewald
39 * VdW interaction: LennardJones
40 * Geometry: Water3-Water3
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
63 real shX,shY,shZ,rcutoff_scalar;
64 real *shiftvec,*fshift,*x,*f;
65 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
69 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
71 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
72 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
73 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
74 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
75 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
76 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
77 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
78 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
79 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
80 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
81 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
82 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
83 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
84 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
85 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
86 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
87 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
90 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
93 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
94 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
96 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
98 __m128 dummy_mask,cutoff_mask;
99 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
100 __m128 one = _mm_set1_ps(1.0);
101 __m128 two = _mm_set1_ps(2.0);
107 jindex = nlist->jindex;
109 shiftidx = nlist->shift;
111 shiftvec = fr->shift_vec[0];
112 fshift = fr->fshift[0];
113 facel = _mm_set1_ps(fr->epsfac);
114 charge = mdatoms->chargeA;
115 nvdwtype = fr->ntype;
117 vdwtype = mdatoms->typeA;
119 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
120 ewtab = fr->ic->tabq_coul_FDV0;
121 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
122 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
124 /* Setup water-specific parameters */
125 inr = nlist->iinr[0];
126 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
127 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
128 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
129 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
131 jq0 = _mm_set1_ps(charge[inr+0]);
132 jq1 = _mm_set1_ps(charge[inr+1]);
133 jq2 = _mm_set1_ps(charge[inr+2]);
134 vdwjidx0A = 2*vdwtype[inr+0];
135 qq00 = _mm_mul_ps(iq0,jq0);
136 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
137 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
138 qq01 = _mm_mul_ps(iq0,jq1);
139 qq02 = _mm_mul_ps(iq0,jq2);
140 qq10 = _mm_mul_ps(iq1,jq0);
141 qq11 = _mm_mul_ps(iq1,jq1);
142 qq12 = _mm_mul_ps(iq1,jq2);
143 qq20 = _mm_mul_ps(iq2,jq0);
144 qq21 = _mm_mul_ps(iq2,jq1);
145 qq22 = _mm_mul_ps(iq2,jq2);
147 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
148 rcutoff_scalar = fr->rcoulomb;
149 rcutoff = _mm_set1_ps(rcutoff_scalar);
150 rcutoff2 = _mm_mul_ps(rcutoff,rcutoff);
152 sh_vdw_invrcut6 = _mm_set1_ps(fr->ic->sh_invrc6);
153 rvdw = _mm_set1_ps(fr->rvdw);
155 /* Avoid stupid compiler warnings */
156 jnrA = jnrB = jnrC = jnrD = 0;
165 /* Start outer loop over neighborlists */
166 for(iidx=0; iidx<nri; iidx++)
168 /* Load shift vector for this list */
169 i_shift_offset = DIM*shiftidx[iidx];
170 shX = shiftvec[i_shift_offset+XX];
171 shY = shiftvec[i_shift_offset+YY];
172 shZ = shiftvec[i_shift_offset+ZZ];
174 /* Load limits for loop over neighbors */
175 j_index_start = jindex[iidx];
176 j_index_end = jindex[iidx+1];
178 /* Get outer coordinate index */
180 i_coord_offset = DIM*inr;
182 /* Load i particle coords and add shift vector */
183 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
184 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
185 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
186 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
187 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
188 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
189 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
190 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
191 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
193 fix0 = _mm_setzero_ps();
194 fiy0 = _mm_setzero_ps();
195 fiz0 = _mm_setzero_ps();
196 fix1 = _mm_setzero_ps();
197 fiy1 = _mm_setzero_ps();
198 fiz1 = _mm_setzero_ps();
199 fix2 = _mm_setzero_ps();
200 fiy2 = _mm_setzero_ps();
201 fiz2 = _mm_setzero_ps();
203 /* Reset potential sums */
204 velecsum = _mm_setzero_ps();
205 vvdwsum = _mm_setzero_ps();
207 /* Start inner kernel loop */
208 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
211 /* Get j neighbor index, and coordinate index */
217 j_coord_offsetA = DIM*jnrA;
218 j_coord_offsetB = DIM*jnrB;
219 j_coord_offsetC = DIM*jnrC;
220 j_coord_offsetD = DIM*jnrD;
222 /* load j atom coordinates */
223 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
224 x+j_coord_offsetC,x+j_coord_offsetD,
225 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
227 /* Calculate displacement vector */
228 dx00 = _mm_sub_ps(ix0,jx0);
229 dy00 = _mm_sub_ps(iy0,jy0);
230 dz00 = _mm_sub_ps(iz0,jz0);
231 dx01 = _mm_sub_ps(ix0,jx1);
232 dy01 = _mm_sub_ps(iy0,jy1);
233 dz01 = _mm_sub_ps(iz0,jz1);
234 dx02 = _mm_sub_ps(ix0,jx2);
235 dy02 = _mm_sub_ps(iy0,jy2);
236 dz02 = _mm_sub_ps(iz0,jz2);
237 dx10 = _mm_sub_ps(ix1,jx0);
238 dy10 = _mm_sub_ps(iy1,jy0);
239 dz10 = _mm_sub_ps(iz1,jz0);
240 dx11 = _mm_sub_ps(ix1,jx1);
241 dy11 = _mm_sub_ps(iy1,jy1);
242 dz11 = _mm_sub_ps(iz1,jz1);
243 dx12 = _mm_sub_ps(ix1,jx2);
244 dy12 = _mm_sub_ps(iy1,jy2);
245 dz12 = _mm_sub_ps(iz1,jz2);
246 dx20 = _mm_sub_ps(ix2,jx0);
247 dy20 = _mm_sub_ps(iy2,jy0);
248 dz20 = _mm_sub_ps(iz2,jz0);
249 dx21 = _mm_sub_ps(ix2,jx1);
250 dy21 = _mm_sub_ps(iy2,jy1);
251 dz21 = _mm_sub_ps(iz2,jz1);
252 dx22 = _mm_sub_ps(ix2,jx2);
253 dy22 = _mm_sub_ps(iy2,jy2);
254 dz22 = _mm_sub_ps(iz2,jz2);
256 /* Calculate squared distance and things based on it */
257 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
258 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
259 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
260 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
261 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
262 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
263 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
264 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
265 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
267 rinv00 = gmx_mm_invsqrt_ps(rsq00);
268 rinv01 = gmx_mm_invsqrt_ps(rsq01);
269 rinv02 = gmx_mm_invsqrt_ps(rsq02);
270 rinv10 = gmx_mm_invsqrt_ps(rsq10);
271 rinv11 = gmx_mm_invsqrt_ps(rsq11);
272 rinv12 = gmx_mm_invsqrt_ps(rsq12);
273 rinv20 = gmx_mm_invsqrt_ps(rsq20);
274 rinv21 = gmx_mm_invsqrt_ps(rsq21);
275 rinv22 = gmx_mm_invsqrt_ps(rsq22);
277 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
278 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
279 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
280 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
281 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
282 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
283 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
284 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
285 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
287 fjx0 = _mm_setzero_ps();
288 fjy0 = _mm_setzero_ps();
289 fjz0 = _mm_setzero_ps();
290 fjx1 = _mm_setzero_ps();
291 fjy1 = _mm_setzero_ps();
292 fjz1 = _mm_setzero_ps();
293 fjx2 = _mm_setzero_ps();
294 fjy2 = _mm_setzero_ps();
295 fjz2 = _mm_setzero_ps();
297 /**************************
298 * CALCULATE INTERACTIONS *
299 **************************/
301 if (gmx_mm_any_lt(rsq00,rcutoff2))
304 r00 = _mm_mul_ps(rsq00,rinv00);
306 /* EWALD ELECTROSTATICS */
308 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
309 ewrt = _mm_mul_ps(r00,ewtabscale);
310 ewitab = _mm_cvttps_epi32(ewrt);
311 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
312 ewitab = _mm_slli_epi32(ewitab,2);
313 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
314 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
315 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
316 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
317 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
318 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
319 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
320 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_sub_ps(rinv00,sh_ewald),velec));
321 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
323 /* LENNARD-JONES DISPERSION/REPULSION */
325 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
326 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
327 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
328 vvdw = _mm_sub_ps(_mm_mul_ps( _mm_sub_ps(vvdw12 , _mm_mul_ps(c12_00,_mm_mul_ps(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
329 _mm_mul_ps( _mm_sub_ps(vvdw6,_mm_mul_ps(c6_00,sh_vdw_invrcut6)),one_sixth));
330 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
332 cutoff_mask = _mm_cmplt_ps(rsq00,rcutoff2);
334 /* Update potential sum for this i atom from the interaction with this j atom. */
335 velec = _mm_and_ps(velec,cutoff_mask);
336 velecsum = _mm_add_ps(velecsum,velec);
337 vvdw = _mm_and_ps(vvdw,cutoff_mask);
338 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
340 fscal = _mm_add_ps(felec,fvdw);
342 fscal = _mm_and_ps(fscal,cutoff_mask);
344 /* Calculate temporary vectorial force */
345 tx = _mm_mul_ps(fscal,dx00);
346 ty = _mm_mul_ps(fscal,dy00);
347 tz = _mm_mul_ps(fscal,dz00);
349 /* Update vectorial force */
350 fix0 = _mm_add_ps(fix0,tx);
351 fiy0 = _mm_add_ps(fiy0,ty);
352 fiz0 = _mm_add_ps(fiz0,tz);
354 fjx0 = _mm_add_ps(fjx0,tx);
355 fjy0 = _mm_add_ps(fjy0,ty);
356 fjz0 = _mm_add_ps(fjz0,tz);
360 /**************************
361 * CALCULATE INTERACTIONS *
362 **************************/
364 if (gmx_mm_any_lt(rsq01,rcutoff2))
367 r01 = _mm_mul_ps(rsq01,rinv01);
369 /* EWALD ELECTROSTATICS */
371 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
372 ewrt = _mm_mul_ps(r01,ewtabscale);
373 ewitab = _mm_cvttps_epi32(ewrt);
374 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
375 ewitab = _mm_slli_epi32(ewitab,2);
376 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
377 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
378 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
379 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
380 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
381 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
382 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
383 velec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_sub_ps(rinv01,sh_ewald),velec));
384 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
386 cutoff_mask = _mm_cmplt_ps(rsq01,rcutoff2);
388 /* Update potential sum for this i atom from the interaction with this j atom. */
389 velec = _mm_and_ps(velec,cutoff_mask);
390 velecsum = _mm_add_ps(velecsum,velec);
394 fscal = _mm_and_ps(fscal,cutoff_mask);
396 /* Calculate temporary vectorial force */
397 tx = _mm_mul_ps(fscal,dx01);
398 ty = _mm_mul_ps(fscal,dy01);
399 tz = _mm_mul_ps(fscal,dz01);
401 /* Update vectorial force */
402 fix0 = _mm_add_ps(fix0,tx);
403 fiy0 = _mm_add_ps(fiy0,ty);
404 fiz0 = _mm_add_ps(fiz0,tz);
406 fjx1 = _mm_add_ps(fjx1,tx);
407 fjy1 = _mm_add_ps(fjy1,ty);
408 fjz1 = _mm_add_ps(fjz1,tz);
412 /**************************
413 * CALCULATE INTERACTIONS *
414 **************************/
416 if (gmx_mm_any_lt(rsq02,rcutoff2))
419 r02 = _mm_mul_ps(rsq02,rinv02);
421 /* EWALD ELECTROSTATICS */
423 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
424 ewrt = _mm_mul_ps(r02,ewtabscale);
425 ewitab = _mm_cvttps_epi32(ewrt);
426 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
427 ewitab = _mm_slli_epi32(ewitab,2);
428 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
429 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
430 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
431 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
432 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
433 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
434 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
435 velec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_sub_ps(rinv02,sh_ewald),velec));
436 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
438 cutoff_mask = _mm_cmplt_ps(rsq02,rcutoff2);
440 /* Update potential sum for this i atom from the interaction with this j atom. */
441 velec = _mm_and_ps(velec,cutoff_mask);
442 velecsum = _mm_add_ps(velecsum,velec);
446 fscal = _mm_and_ps(fscal,cutoff_mask);
448 /* Calculate temporary vectorial force */
449 tx = _mm_mul_ps(fscal,dx02);
450 ty = _mm_mul_ps(fscal,dy02);
451 tz = _mm_mul_ps(fscal,dz02);
453 /* Update vectorial force */
454 fix0 = _mm_add_ps(fix0,tx);
455 fiy0 = _mm_add_ps(fiy0,ty);
456 fiz0 = _mm_add_ps(fiz0,tz);
458 fjx2 = _mm_add_ps(fjx2,tx);
459 fjy2 = _mm_add_ps(fjy2,ty);
460 fjz2 = _mm_add_ps(fjz2,tz);
464 /**************************
465 * CALCULATE INTERACTIONS *
466 **************************/
468 if (gmx_mm_any_lt(rsq10,rcutoff2))
471 r10 = _mm_mul_ps(rsq10,rinv10);
473 /* EWALD ELECTROSTATICS */
475 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
476 ewrt = _mm_mul_ps(r10,ewtabscale);
477 ewitab = _mm_cvttps_epi32(ewrt);
478 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
479 ewitab = _mm_slli_epi32(ewitab,2);
480 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
481 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
482 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
483 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
484 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
485 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
486 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
487 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_sub_ps(rinv10,sh_ewald),velec));
488 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
490 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
492 /* Update potential sum for this i atom from the interaction with this j atom. */
493 velec = _mm_and_ps(velec,cutoff_mask);
494 velecsum = _mm_add_ps(velecsum,velec);
498 fscal = _mm_and_ps(fscal,cutoff_mask);
500 /* Calculate temporary vectorial force */
501 tx = _mm_mul_ps(fscal,dx10);
502 ty = _mm_mul_ps(fscal,dy10);
503 tz = _mm_mul_ps(fscal,dz10);
505 /* Update vectorial force */
506 fix1 = _mm_add_ps(fix1,tx);
507 fiy1 = _mm_add_ps(fiy1,ty);
508 fiz1 = _mm_add_ps(fiz1,tz);
510 fjx0 = _mm_add_ps(fjx0,tx);
511 fjy0 = _mm_add_ps(fjy0,ty);
512 fjz0 = _mm_add_ps(fjz0,tz);
516 /**************************
517 * CALCULATE INTERACTIONS *
518 **************************/
520 if (gmx_mm_any_lt(rsq11,rcutoff2))
523 r11 = _mm_mul_ps(rsq11,rinv11);
525 /* EWALD ELECTROSTATICS */
527 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
528 ewrt = _mm_mul_ps(r11,ewtabscale);
529 ewitab = _mm_cvttps_epi32(ewrt);
530 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
531 ewitab = _mm_slli_epi32(ewitab,2);
532 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
533 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
534 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
535 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
536 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
537 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
538 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
539 velec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_sub_ps(rinv11,sh_ewald),velec));
540 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
542 cutoff_mask = _mm_cmplt_ps(rsq11,rcutoff2);
544 /* Update potential sum for this i atom from the interaction with this j atom. */
545 velec = _mm_and_ps(velec,cutoff_mask);
546 velecsum = _mm_add_ps(velecsum,velec);
550 fscal = _mm_and_ps(fscal,cutoff_mask);
552 /* Calculate temporary vectorial force */
553 tx = _mm_mul_ps(fscal,dx11);
554 ty = _mm_mul_ps(fscal,dy11);
555 tz = _mm_mul_ps(fscal,dz11);
557 /* Update vectorial force */
558 fix1 = _mm_add_ps(fix1,tx);
559 fiy1 = _mm_add_ps(fiy1,ty);
560 fiz1 = _mm_add_ps(fiz1,tz);
562 fjx1 = _mm_add_ps(fjx1,tx);
563 fjy1 = _mm_add_ps(fjy1,ty);
564 fjz1 = _mm_add_ps(fjz1,tz);
568 /**************************
569 * CALCULATE INTERACTIONS *
570 **************************/
572 if (gmx_mm_any_lt(rsq12,rcutoff2))
575 r12 = _mm_mul_ps(rsq12,rinv12);
577 /* EWALD ELECTROSTATICS */
579 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
580 ewrt = _mm_mul_ps(r12,ewtabscale);
581 ewitab = _mm_cvttps_epi32(ewrt);
582 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
583 ewitab = _mm_slli_epi32(ewitab,2);
584 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
585 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
586 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
587 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
588 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
589 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
590 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
591 velec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_sub_ps(rinv12,sh_ewald),velec));
592 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
594 cutoff_mask = _mm_cmplt_ps(rsq12,rcutoff2);
596 /* Update potential sum for this i atom from the interaction with this j atom. */
597 velec = _mm_and_ps(velec,cutoff_mask);
598 velecsum = _mm_add_ps(velecsum,velec);
602 fscal = _mm_and_ps(fscal,cutoff_mask);
604 /* Calculate temporary vectorial force */
605 tx = _mm_mul_ps(fscal,dx12);
606 ty = _mm_mul_ps(fscal,dy12);
607 tz = _mm_mul_ps(fscal,dz12);
609 /* Update vectorial force */
610 fix1 = _mm_add_ps(fix1,tx);
611 fiy1 = _mm_add_ps(fiy1,ty);
612 fiz1 = _mm_add_ps(fiz1,tz);
614 fjx2 = _mm_add_ps(fjx2,tx);
615 fjy2 = _mm_add_ps(fjy2,ty);
616 fjz2 = _mm_add_ps(fjz2,tz);
620 /**************************
621 * CALCULATE INTERACTIONS *
622 **************************/
624 if (gmx_mm_any_lt(rsq20,rcutoff2))
627 r20 = _mm_mul_ps(rsq20,rinv20);
629 /* EWALD ELECTROSTATICS */
631 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
632 ewrt = _mm_mul_ps(r20,ewtabscale);
633 ewitab = _mm_cvttps_epi32(ewrt);
634 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
635 ewitab = _mm_slli_epi32(ewitab,2);
636 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
637 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
638 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
639 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
640 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
641 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
642 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
643 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_sub_ps(rinv20,sh_ewald),velec));
644 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
646 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
648 /* Update potential sum for this i atom from the interaction with this j atom. */
649 velec = _mm_and_ps(velec,cutoff_mask);
650 velecsum = _mm_add_ps(velecsum,velec);
654 fscal = _mm_and_ps(fscal,cutoff_mask);
656 /* Calculate temporary vectorial force */
657 tx = _mm_mul_ps(fscal,dx20);
658 ty = _mm_mul_ps(fscal,dy20);
659 tz = _mm_mul_ps(fscal,dz20);
661 /* Update vectorial force */
662 fix2 = _mm_add_ps(fix2,tx);
663 fiy2 = _mm_add_ps(fiy2,ty);
664 fiz2 = _mm_add_ps(fiz2,tz);
666 fjx0 = _mm_add_ps(fjx0,tx);
667 fjy0 = _mm_add_ps(fjy0,ty);
668 fjz0 = _mm_add_ps(fjz0,tz);
672 /**************************
673 * CALCULATE INTERACTIONS *
674 **************************/
676 if (gmx_mm_any_lt(rsq21,rcutoff2))
679 r21 = _mm_mul_ps(rsq21,rinv21);
681 /* EWALD ELECTROSTATICS */
683 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
684 ewrt = _mm_mul_ps(r21,ewtabscale);
685 ewitab = _mm_cvttps_epi32(ewrt);
686 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
687 ewitab = _mm_slli_epi32(ewitab,2);
688 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
689 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
690 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
691 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
692 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
693 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
694 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
695 velec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_sub_ps(rinv21,sh_ewald),velec));
696 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
698 cutoff_mask = _mm_cmplt_ps(rsq21,rcutoff2);
700 /* Update potential sum for this i atom from the interaction with this j atom. */
701 velec = _mm_and_ps(velec,cutoff_mask);
702 velecsum = _mm_add_ps(velecsum,velec);
706 fscal = _mm_and_ps(fscal,cutoff_mask);
708 /* Calculate temporary vectorial force */
709 tx = _mm_mul_ps(fscal,dx21);
710 ty = _mm_mul_ps(fscal,dy21);
711 tz = _mm_mul_ps(fscal,dz21);
713 /* Update vectorial force */
714 fix2 = _mm_add_ps(fix2,tx);
715 fiy2 = _mm_add_ps(fiy2,ty);
716 fiz2 = _mm_add_ps(fiz2,tz);
718 fjx1 = _mm_add_ps(fjx1,tx);
719 fjy1 = _mm_add_ps(fjy1,ty);
720 fjz1 = _mm_add_ps(fjz1,tz);
724 /**************************
725 * CALCULATE INTERACTIONS *
726 **************************/
728 if (gmx_mm_any_lt(rsq22,rcutoff2))
731 r22 = _mm_mul_ps(rsq22,rinv22);
733 /* EWALD ELECTROSTATICS */
735 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
736 ewrt = _mm_mul_ps(r22,ewtabscale);
737 ewitab = _mm_cvttps_epi32(ewrt);
738 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
739 ewitab = _mm_slli_epi32(ewitab,2);
740 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
741 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
742 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
743 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
744 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
745 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
746 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
747 velec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_sub_ps(rinv22,sh_ewald),velec));
748 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
750 cutoff_mask = _mm_cmplt_ps(rsq22,rcutoff2);
752 /* Update potential sum for this i atom from the interaction with this j atom. */
753 velec = _mm_and_ps(velec,cutoff_mask);
754 velecsum = _mm_add_ps(velecsum,velec);
758 fscal = _mm_and_ps(fscal,cutoff_mask);
760 /* Calculate temporary vectorial force */
761 tx = _mm_mul_ps(fscal,dx22);
762 ty = _mm_mul_ps(fscal,dy22);
763 tz = _mm_mul_ps(fscal,dz22);
765 /* Update vectorial force */
766 fix2 = _mm_add_ps(fix2,tx);
767 fiy2 = _mm_add_ps(fiy2,ty);
768 fiz2 = _mm_add_ps(fiz2,tz);
770 fjx2 = _mm_add_ps(fjx2,tx);
771 fjy2 = _mm_add_ps(fjy2,ty);
772 fjz2 = _mm_add_ps(fjz2,tz);
776 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
777 f+j_coord_offsetC,f+j_coord_offsetD,
778 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
780 /* Inner loop uses 432 flops */
786 /* Get j neighbor index, and coordinate index */
792 /* Sign of each element will be negative for non-real atoms.
793 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
794 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
796 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
797 jnrA = (jnrA>=0) ? jnrA : 0;
798 jnrB = (jnrB>=0) ? jnrB : 0;
799 jnrC = (jnrC>=0) ? jnrC : 0;
800 jnrD = (jnrD>=0) ? jnrD : 0;
802 j_coord_offsetA = DIM*jnrA;
803 j_coord_offsetB = DIM*jnrB;
804 j_coord_offsetC = DIM*jnrC;
805 j_coord_offsetD = DIM*jnrD;
807 /* load j atom coordinates */
808 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
809 x+j_coord_offsetC,x+j_coord_offsetD,
810 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
812 /* Calculate displacement vector */
813 dx00 = _mm_sub_ps(ix0,jx0);
814 dy00 = _mm_sub_ps(iy0,jy0);
815 dz00 = _mm_sub_ps(iz0,jz0);
816 dx01 = _mm_sub_ps(ix0,jx1);
817 dy01 = _mm_sub_ps(iy0,jy1);
818 dz01 = _mm_sub_ps(iz0,jz1);
819 dx02 = _mm_sub_ps(ix0,jx2);
820 dy02 = _mm_sub_ps(iy0,jy2);
821 dz02 = _mm_sub_ps(iz0,jz2);
822 dx10 = _mm_sub_ps(ix1,jx0);
823 dy10 = _mm_sub_ps(iy1,jy0);
824 dz10 = _mm_sub_ps(iz1,jz0);
825 dx11 = _mm_sub_ps(ix1,jx1);
826 dy11 = _mm_sub_ps(iy1,jy1);
827 dz11 = _mm_sub_ps(iz1,jz1);
828 dx12 = _mm_sub_ps(ix1,jx2);
829 dy12 = _mm_sub_ps(iy1,jy2);
830 dz12 = _mm_sub_ps(iz1,jz2);
831 dx20 = _mm_sub_ps(ix2,jx0);
832 dy20 = _mm_sub_ps(iy2,jy0);
833 dz20 = _mm_sub_ps(iz2,jz0);
834 dx21 = _mm_sub_ps(ix2,jx1);
835 dy21 = _mm_sub_ps(iy2,jy1);
836 dz21 = _mm_sub_ps(iz2,jz1);
837 dx22 = _mm_sub_ps(ix2,jx2);
838 dy22 = _mm_sub_ps(iy2,jy2);
839 dz22 = _mm_sub_ps(iz2,jz2);
841 /* Calculate squared distance and things based on it */
842 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
843 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
844 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
845 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
846 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
847 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
848 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
849 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
850 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
852 rinv00 = gmx_mm_invsqrt_ps(rsq00);
853 rinv01 = gmx_mm_invsqrt_ps(rsq01);
854 rinv02 = gmx_mm_invsqrt_ps(rsq02);
855 rinv10 = gmx_mm_invsqrt_ps(rsq10);
856 rinv11 = gmx_mm_invsqrt_ps(rsq11);
857 rinv12 = gmx_mm_invsqrt_ps(rsq12);
858 rinv20 = gmx_mm_invsqrt_ps(rsq20);
859 rinv21 = gmx_mm_invsqrt_ps(rsq21);
860 rinv22 = gmx_mm_invsqrt_ps(rsq22);
862 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
863 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
864 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
865 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
866 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
867 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
868 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
869 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
870 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
872 fjx0 = _mm_setzero_ps();
873 fjy0 = _mm_setzero_ps();
874 fjz0 = _mm_setzero_ps();
875 fjx1 = _mm_setzero_ps();
876 fjy1 = _mm_setzero_ps();
877 fjz1 = _mm_setzero_ps();
878 fjx2 = _mm_setzero_ps();
879 fjy2 = _mm_setzero_ps();
880 fjz2 = _mm_setzero_ps();
882 /**************************
883 * CALCULATE INTERACTIONS *
884 **************************/
886 if (gmx_mm_any_lt(rsq00,rcutoff2))
889 r00 = _mm_mul_ps(rsq00,rinv00);
890 r00 = _mm_andnot_ps(dummy_mask,r00);
892 /* EWALD ELECTROSTATICS */
894 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
895 ewrt = _mm_mul_ps(r00,ewtabscale);
896 ewitab = _mm_cvttps_epi32(ewrt);
897 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
898 ewitab = _mm_slli_epi32(ewitab,2);
899 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
900 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
901 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
902 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
903 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
904 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
905 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
906 velec = _mm_mul_ps(qq00,_mm_sub_ps(_mm_sub_ps(rinv00,sh_ewald),velec));
907 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
909 /* LENNARD-JONES DISPERSION/REPULSION */
911 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
912 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
913 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
914 vvdw = _mm_sub_ps(_mm_mul_ps( _mm_sub_ps(vvdw12 , _mm_mul_ps(c12_00,_mm_mul_ps(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
915 _mm_mul_ps( _mm_sub_ps(vvdw6,_mm_mul_ps(c6_00,sh_vdw_invrcut6)),one_sixth));
916 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
918 cutoff_mask = _mm_cmplt_ps(rsq00,rcutoff2);
920 /* Update potential sum for this i atom from the interaction with this j atom. */
921 velec = _mm_and_ps(velec,cutoff_mask);
922 velec = _mm_andnot_ps(dummy_mask,velec);
923 velecsum = _mm_add_ps(velecsum,velec);
924 vvdw = _mm_and_ps(vvdw,cutoff_mask);
925 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
926 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
928 fscal = _mm_add_ps(felec,fvdw);
930 fscal = _mm_and_ps(fscal,cutoff_mask);
932 fscal = _mm_andnot_ps(dummy_mask,fscal);
934 /* Calculate temporary vectorial force */
935 tx = _mm_mul_ps(fscal,dx00);
936 ty = _mm_mul_ps(fscal,dy00);
937 tz = _mm_mul_ps(fscal,dz00);
939 /* Update vectorial force */
940 fix0 = _mm_add_ps(fix0,tx);
941 fiy0 = _mm_add_ps(fiy0,ty);
942 fiz0 = _mm_add_ps(fiz0,tz);
944 fjx0 = _mm_add_ps(fjx0,tx);
945 fjy0 = _mm_add_ps(fjy0,ty);
946 fjz0 = _mm_add_ps(fjz0,tz);
950 /**************************
951 * CALCULATE INTERACTIONS *
952 **************************/
954 if (gmx_mm_any_lt(rsq01,rcutoff2))
957 r01 = _mm_mul_ps(rsq01,rinv01);
958 r01 = _mm_andnot_ps(dummy_mask,r01);
960 /* EWALD ELECTROSTATICS */
962 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
963 ewrt = _mm_mul_ps(r01,ewtabscale);
964 ewitab = _mm_cvttps_epi32(ewrt);
965 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
966 ewitab = _mm_slli_epi32(ewitab,2);
967 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
968 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
969 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
970 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
971 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
972 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
973 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
974 velec = _mm_mul_ps(qq01,_mm_sub_ps(_mm_sub_ps(rinv01,sh_ewald),velec));
975 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
977 cutoff_mask = _mm_cmplt_ps(rsq01,rcutoff2);
979 /* Update potential sum for this i atom from the interaction with this j atom. */
980 velec = _mm_and_ps(velec,cutoff_mask);
981 velec = _mm_andnot_ps(dummy_mask,velec);
982 velecsum = _mm_add_ps(velecsum,velec);
986 fscal = _mm_and_ps(fscal,cutoff_mask);
988 fscal = _mm_andnot_ps(dummy_mask,fscal);
990 /* Calculate temporary vectorial force */
991 tx = _mm_mul_ps(fscal,dx01);
992 ty = _mm_mul_ps(fscal,dy01);
993 tz = _mm_mul_ps(fscal,dz01);
995 /* Update vectorial force */
996 fix0 = _mm_add_ps(fix0,tx);
997 fiy0 = _mm_add_ps(fiy0,ty);
998 fiz0 = _mm_add_ps(fiz0,tz);
1000 fjx1 = _mm_add_ps(fjx1,tx);
1001 fjy1 = _mm_add_ps(fjy1,ty);
1002 fjz1 = _mm_add_ps(fjz1,tz);
1006 /**************************
1007 * CALCULATE INTERACTIONS *
1008 **************************/
1010 if (gmx_mm_any_lt(rsq02,rcutoff2))
1013 r02 = _mm_mul_ps(rsq02,rinv02);
1014 r02 = _mm_andnot_ps(dummy_mask,r02);
1016 /* EWALD ELECTROSTATICS */
1018 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1019 ewrt = _mm_mul_ps(r02,ewtabscale);
1020 ewitab = _mm_cvttps_epi32(ewrt);
1021 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1022 ewitab = _mm_slli_epi32(ewitab,2);
1023 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1024 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1025 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1026 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1027 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1028 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1029 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1030 velec = _mm_mul_ps(qq02,_mm_sub_ps(_mm_sub_ps(rinv02,sh_ewald),velec));
1031 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
1033 cutoff_mask = _mm_cmplt_ps(rsq02,rcutoff2);
1035 /* Update potential sum for this i atom from the interaction with this j atom. */
1036 velec = _mm_and_ps(velec,cutoff_mask);
1037 velec = _mm_andnot_ps(dummy_mask,velec);
1038 velecsum = _mm_add_ps(velecsum,velec);
1042 fscal = _mm_and_ps(fscal,cutoff_mask);
1044 fscal = _mm_andnot_ps(dummy_mask,fscal);
1046 /* Calculate temporary vectorial force */
1047 tx = _mm_mul_ps(fscal,dx02);
1048 ty = _mm_mul_ps(fscal,dy02);
1049 tz = _mm_mul_ps(fscal,dz02);
1051 /* Update vectorial force */
1052 fix0 = _mm_add_ps(fix0,tx);
1053 fiy0 = _mm_add_ps(fiy0,ty);
1054 fiz0 = _mm_add_ps(fiz0,tz);
1056 fjx2 = _mm_add_ps(fjx2,tx);
1057 fjy2 = _mm_add_ps(fjy2,ty);
1058 fjz2 = _mm_add_ps(fjz2,tz);
1062 /**************************
1063 * CALCULATE INTERACTIONS *
1064 **************************/
1066 if (gmx_mm_any_lt(rsq10,rcutoff2))
1069 r10 = _mm_mul_ps(rsq10,rinv10);
1070 r10 = _mm_andnot_ps(dummy_mask,r10);
1072 /* EWALD ELECTROSTATICS */
1074 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1075 ewrt = _mm_mul_ps(r10,ewtabscale);
1076 ewitab = _mm_cvttps_epi32(ewrt);
1077 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1078 ewitab = _mm_slli_epi32(ewitab,2);
1079 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1080 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1081 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1082 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1083 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1084 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1085 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1086 velec = _mm_mul_ps(qq10,_mm_sub_ps(_mm_sub_ps(rinv10,sh_ewald),velec));
1087 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1089 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
1091 /* Update potential sum for this i atom from the interaction with this j atom. */
1092 velec = _mm_and_ps(velec,cutoff_mask);
1093 velec = _mm_andnot_ps(dummy_mask,velec);
1094 velecsum = _mm_add_ps(velecsum,velec);
1098 fscal = _mm_and_ps(fscal,cutoff_mask);
1100 fscal = _mm_andnot_ps(dummy_mask,fscal);
1102 /* Calculate temporary vectorial force */
1103 tx = _mm_mul_ps(fscal,dx10);
1104 ty = _mm_mul_ps(fscal,dy10);
1105 tz = _mm_mul_ps(fscal,dz10);
1107 /* Update vectorial force */
1108 fix1 = _mm_add_ps(fix1,tx);
1109 fiy1 = _mm_add_ps(fiy1,ty);
1110 fiz1 = _mm_add_ps(fiz1,tz);
1112 fjx0 = _mm_add_ps(fjx0,tx);
1113 fjy0 = _mm_add_ps(fjy0,ty);
1114 fjz0 = _mm_add_ps(fjz0,tz);
1118 /**************************
1119 * CALCULATE INTERACTIONS *
1120 **************************/
1122 if (gmx_mm_any_lt(rsq11,rcutoff2))
1125 r11 = _mm_mul_ps(rsq11,rinv11);
1126 r11 = _mm_andnot_ps(dummy_mask,r11);
1128 /* EWALD ELECTROSTATICS */
1130 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1131 ewrt = _mm_mul_ps(r11,ewtabscale);
1132 ewitab = _mm_cvttps_epi32(ewrt);
1133 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1134 ewitab = _mm_slli_epi32(ewitab,2);
1135 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1136 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1137 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1138 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1139 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1140 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1141 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1142 velec = _mm_mul_ps(qq11,_mm_sub_ps(_mm_sub_ps(rinv11,sh_ewald),velec));
1143 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
1145 cutoff_mask = _mm_cmplt_ps(rsq11,rcutoff2);
1147 /* Update potential sum for this i atom from the interaction with this j atom. */
1148 velec = _mm_and_ps(velec,cutoff_mask);
1149 velec = _mm_andnot_ps(dummy_mask,velec);
1150 velecsum = _mm_add_ps(velecsum,velec);
1154 fscal = _mm_and_ps(fscal,cutoff_mask);
1156 fscal = _mm_andnot_ps(dummy_mask,fscal);
1158 /* Calculate temporary vectorial force */
1159 tx = _mm_mul_ps(fscal,dx11);
1160 ty = _mm_mul_ps(fscal,dy11);
1161 tz = _mm_mul_ps(fscal,dz11);
1163 /* Update vectorial force */
1164 fix1 = _mm_add_ps(fix1,tx);
1165 fiy1 = _mm_add_ps(fiy1,ty);
1166 fiz1 = _mm_add_ps(fiz1,tz);
1168 fjx1 = _mm_add_ps(fjx1,tx);
1169 fjy1 = _mm_add_ps(fjy1,ty);
1170 fjz1 = _mm_add_ps(fjz1,tz);
1174 /**************************
1175 * CALCULATE INTERACTIONS *
1176 **************************/
1178 if (gmx_mm_any_lt(rsq12,rcutoff2))
1181 r12 = _mm_mul_ps(rsq12,rinv12);
1182 r12 = _mm_andnot_ps(dummy_mask,r12);
1184 /* EWALD ELECTROSTATICS */
1186 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1187 ewrt = _mm_mul_ps(r12,ewtabscale);
1188 ewitab = _mm_cvttps_epi32(ewrt);
1189 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1190 ewitab = _mm_slli_epi32(ewitab,2);
1191 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1192 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1193 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1194 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1195 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1196 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1197 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1198 velec = _mm_mul_ps(qq12,_mm_sub_ps(_mm_sub_ps(rinv12,sh_ewald),velec));
1199 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
1201 cutoff_mask = _mm_cmplt_ps(rsq12,rcutoff2);
1203 /* Update potential sum for this i atom from the interaction with this j atom. */
1204 velec = _mm_and_ps(velec,cutoff_mask);
1205 velec = _mm_andnot_ps(dummy_mask,velec);
1206 velecsum = _mm_add_ps(velecsum,velec);
1210 fscal = _mm_and_ps(fscal,cutoff_mask);
1212 fscal = _mm_andnot_ps(dummy_mask,fscal);
1214 /* Calculate temporary vectorial force */
1215 tx = _mm_mul_ps(fscal,dx12);
1216 ty = _mm_mul_ps(fscal,dy12);
1217 tz = _mm_mul_ps(fscal,dz12);
1219 /* Update vectorial force */
1220 fix1 = _mm_add_ps(fix1,tx);
1221 fiy1 = _mm_add_ps(fiy1,ty);
1222 fiz1 = _mm_add_ps(fiz1,tz);
1224 fjx2 = _mm_add_ps(fjx2,tx);
1225 fjy2 = _mm_add_ps(fjy2,ty);
1226 fjz2 = _mm_add_ps(fjz2,tz);
1230 /**************************
1231 * CALCULATE INTERACTIONS *
1232 **************************/
1234 if (gmx_mm_any_lt(rsq20,rcutoff2))
1237 r20 = _mm_mul_ps(rsq20,rinv20);
1238 r20 = _mm_andnot_ps(dummy_mask,r20);
1240 /* EWALD ELECTROSTATICS */
1242 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1243 ewrt = _mm_mul_ps(r20,ewtabscale);
1244 ewitab = _mm_cvttps_epi32(ewrt);
1245 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1246 ewitab = _mm_slli_epi32(ewitab,2);
1247 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1248 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1249 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1250 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1251 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1252 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1253 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1254 velec = _mm_mul_ps(qq20,_mm_sub_ps(_mm_sub_ps(rinv20,sh_ewald),velec));
1255 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1257 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
1259 /* Update potential sum for this i atom from the interaction with this j atom. */
1260 velec = _mm_and_ps(velec,cutoff_mask);
1261 velec = _mm_andnot_ps(dummy_mask,velec);
1262 velecsum = _mm_add_ps(velecsum,velec);
1266 fscal = _mm_and_ps(fscal,cutoff_mask);
1268 fscal = _mm_andnot_ps(dummy_mask,fscal);
1270 /* Calculate temporary vectorial force */
1271 tx = _mm_mul_ps(fscal,dx20);
1272 ty = _mm_mul_ps(fscal,dy20);
1273 tz = _mm_mul_ps(fscal,dz20);
1275 /* Update vectorial force */
1276 fix2 = _mm_add_ps(fix2,tx);
1277 fiy2 = _mm_add_ps(fiy2,ty);
1278 fiz2 = _mm_add_ps(fiz2,tz);
1280 fjx0 = _mm_add_ps(fjx0,tx);
1281 fjy0 = _mm_add_ps(fjy0,ty);
1282 fjz0 = _mm_add_ps(fjz0,tz);
1286 /**************************
1287 * CALCULATE INTERACTIONS *
1288 **************************/
1290 if (gmx_mm_any_lt(rsq21,rcutoff2))
1293 r21 = _mm_mul_ps(rsq21,rinv21);
1294 r21 = _mm_andnot_ps(dummy_mask,r21);
1296 /* EWALD ELECTROSTATICS */
1298 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1299 ewrt = _mm_mul_ps(r21,ewtabscale);
1300 ewitab = _mm_cvttps_epi32(ewrt);
1301 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1302 ewitab = _mm_slli_epi32(ewitab,2);
1303 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1304 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1305 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1306 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1307 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1308 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1309 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1310 velec = _mm_mul_ps(qq21,_mm_sub_ps(_mm_sub_ps(rinv21,sh_ewald),velec));
1311 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
1313 cutoff_mask = _mm_cmplt_ps(rsq21,rcutoff2);
1315 /* Update potential sum for this i atom from the interaction with this j atom. */
1316 velec = _mm_and_ps(velec,cutoff_mask);
1317 velec = _mm_andnot_ps(dummy_mask,velec);
1318 velecsum = _mm_add_ps(velecsum,velec);
1322 fscal = _mm_and_ps(fscal,cutoff_mask);
1324 fscal = _mm_andnot_ps(dummy_mask,fscal);
1326 /* Calculate temporary vectorial force */
1327 tx = _mm_mul_ps(fscal,dx21);
1328 ty = _mm_mul_ps(fscal,dy21);
1329 tz = _mm_mul_ps(fscal,dz21);
1331 /* Update vectorial force */
1332 fix2 = _mm_add_ps(fix2,tx);
1333 fiy2 = _mm_add_ps(fiy2,ty);
1334 fiz2 = _mm_add_ps(fiz2,tz);
1336 fjx1 = _mm_add_ps(fjx1,tx);
1337 fjy1 = _mm_add_ps(fjy1,ty);
1338 fjz1 = _mm_add_ps(fjz1,tz);
1342 /**************************
1343 * CALCULATE INTERACTIONS *
1344 **************************/
1346 if (gmx_mm_any_lt(rsq22,rcutoff2))
1349 r22 = _mm_mul_ps(rsq22,rinv22);
1350 r22 = _mm_andnot_ps(dummy_mask,r22);
1352 /* EWALD ELECTROSTATICS */
1354 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1355 ewrt = _mm_mul_ps(r22,ewtabscale);
1356 ewitab = _mm_cvttps_epi32(ewrt);
1357 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1358 ewitab = _mm_slli_epi32(ewitab,2);
1359 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
1360 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
1361 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
1362 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
1363 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
1364 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
1365 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
1366 velec = _mm_mul_ps(qq22,_mm_sub_ps(_mm_sub_ps(rinv22,sh_ewald),velec));
1367 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
1369 cutoff_mask = _mm_cmplt_ps(rsq22,rcutoff2);
1371 /* Update potential sum for this i atom from the interaction with this j atom. */
1372 velec = _mm_and_ps(velec,cutoff_mask);
1373 velec = _mm_andnot_ps(dummy_mask,velec);
1374 velecsum = _mm_add_ps(velecsum,velec);
1378 fscal = _mm_and_ps(fscal,cutoff_mask);
1380 fscal = _mm_andnot_ps(dummy_mask,fscal);
1382 /* Calculate temporary vectorial force */
1383 tx = _mm_mul_ps(fscal,dx22);
1384 ty = _mm_mul_ps(fscal,dy22);
1385 tz = _mm_mul_ps(fscal,dz22);
1387 /* Update vectorial force */
1388 fix2 = _mm_add_ps(fix2,tx);
1389 fiy2 = _mm_add_ps(fiy2,ty);
1390 fiz2 = _mm_add_ps(fiz2,tz);
1392 fjx2 = _mm_add_ps(fjx2,tx);
1393 fjy2 = _mm_add_ps(fjy2,ty);
1394 fjz2 = _mm_add_ps(fjz2,tz);
1398 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1399 f+j_coord_offsetC,f+j_coord_offsetD,
1400 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1402 /* Inner loop uses 441 flops */
1405 /* End of innermost loop */
1407 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1408 f+i_coord_offset,fshift+i_shift_offset);
1411 /* Update potential energies */
1412 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1413 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1415 /* Increment number of inner iterations */
1416 inneriter += j_index_end - j_index_start;
1418 /* Outer loop uses 29 flops */
1421 /* Increment number of outer iterations */
1424 /* Update outer/inner flops */
1426 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*29 + inneriter*441);
1429 * Gromacs nonbonded kernel: nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_F_sse2_single
1430 * Electrostatics interaction: Ewald
1431 * VdW interaction: LennardJones
1432 * Geometry: Water3-Water3
1433 * Calculate force/pot: Force
1436 nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_F_sse2_single
1437 (t_nblist * gmx_restrict nlist,
1438 rvec * gmx_restrict xx,
1439 rvec * gmx_restrict ff,
1440 t_forcerec * gmx_restrict fr,
1441 t_mdatoms * gmx_restrict mdatoms,
1442 nb_kernel_data_t * gmx_restrict kernel_data,
1443 t_nrnb * gmx_restrict nrnb)
1445 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1446 * just 0 for non-waters.
1447 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
1448 * jnr indices corresponding to data put in the four positions in the SIMD register.
1450 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1451 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1452 int jnrA,jnrB,jnrC,jnrD;
1453 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1454 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1455 real shX,shY,shZ,rcutoff_scalar;
1456 real *shiftvec,*fshift,*x,*f;
1457 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1459 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1461 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1463 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1464 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1465 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1466 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1467 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1468 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1469 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1470 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1471 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1472 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1473 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1474 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1475 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1476 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1477 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1478 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1479 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
1482 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1485 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
1486 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
1488 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
1490 __m128 dummy_mask,cutoff_mask;
1491 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
1492 __m128 one = _mm_set1_ps(1.0);
1493 __m128 two = _mm_set1_ps(2.0);
1499 jindex = nlist->jindex;
1501 shiftidx = nlist->shift;
1503 shiftvec = fr->shift_vec[0];
1504 fshift = fr->fshift[0];
1505 facel = _mm_set1_ps(fr->epsfac);
1506 charge = mdatoms->chargeA;
1507 nvdwtype = fr->ntype;
1508 vdwparam = fr->nbfp;
1509 vdwtype = mdatoms->typeA;
1511 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
1512 ewtab = fr->ic->tabq_coul_F;
1513 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
1514 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
1516 /* Setup water-specific parameters */
1517 inr = nlist->iinr[0];
1518 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
1519 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
1520 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
1521 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1523 jq0 = _mm_set1_ps(charge[inr+0]);
1524 jq1 = _mm_set1_ps(charge[inr+1]);
1525 jq2 = _mm_set1_ps(charge[inr+2]);
1526 vdwjidx0A = 2*vdwtype[inr+0];
1527 qq00 = _mm_mul_ps(iq0,jq0);
1528 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
1529 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
1530 qq01 = _mm_mul_ps(iq0,jq1);
1531 qq02 = _mm_mul_ps(iq0,jq2);
1532 qq10 = _mm_mul_ps(iq1,jq0);
1533 qq11 = _mm_mul_ps(iq1,jq1);
1534 qq12 = _mm_mul_ps(iq1,jq2);
1535 qq20 = _mm_mul_ps(iq2,jq0);
1536 qq21 = _mm_mul_ps(iq2,jq1);
1537 qq22 = _mm_mul_ps(iq2,jq2);
1539 /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
1540 rcutoff_scalar = fr->rcoulomb;
1541 rcutoff = _mm_set1_ps(rcutoff_scalar);
1542 rcutoff2 = _mm_mul_ps(rcutoff,rcutoff);
1544 sh_vdw_invrcut6 = _mm_set1_ps(fr->ic->sh_invrc6);
1545 rvdw = _mm_set1_ps(fr->rvdw);
1547 /* Avoid stupid compiler warnings */
1548 jnrA = jnrB = jnrC = jnrD = 0;
1549 j_coord_offsetA = 0;
1550 j_coord_offsetB = 0;
1551 j_coord_offsetC = 0;
1552 j_coord_offsetD = 0;
1557 /* Start outer loop over neighborlists */
1558 for(iidx=0; iidx<nri; iidx++)
1560 /* Load shift vector for this list */
1561 i_shift_offset = DIM*shiftidx[iidx];
1562 shX = shiftvec[i_shift_offset+XX];
1563 shY = shiftvec[i_shift_offset+YY];
1564 shZ = shiftvec[i_shift_offset+ZZ];
1566 /* Load limits for loop over neighbors */
1567 j_index_start = jindex[iidx];
1568 j_index_end = jindex[iidx+1];
1570 /* Get outer coordinate index */
1572 i_coord_offset = DIM*inr;
1574 /* Load i particle coords and add shift vector */
1575 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
1576 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
1577 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
1578 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
1579 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
1580 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
1581 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
1582 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
1583 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
1585 fix0 = _mm_setzero_ps();
1586 fiy0 = _mm_setzero_ps();
1587 fiz0 = _mm_setzero_ps();
1588 fix1 = _mm_setzero_ps();
1589 fiy1 = _mm_setzero_ps();
1590 fiz1 = _mm_setzero_ps();
1591 fix2 = _mm_setzero_ps();
1592 fiy2 = _mm_setzero_ps();
1593 fiz2 = _mm_setzero_ps();
1595 /* Start inner kernel loop */
1596 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1599 /* Get j neighbor index, and coordinate index */
1601 jnrB = jjnr[jidx+1];
1602 jnrC = jjnr[jidx+2];
1603 jnrD = jjnr[jidx+3];
1605 j_coord_offsetA = DIM*jnrA;
1606 j_coord_offsetB = DIM*jnrB;
1607 j_coord_offsetC = DIM*jnrC;
1608 j_coord_offsetD = DIM*jnrD;
1610 /* load j atom coordinates */
1611 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1612 x+j_coord_offsetC,x+j_coord_offsetD,
1613 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1615 /* Calculate displacement vector */
1616 dx00 = _mm_sub_ps(ix0,jx0);
1617 dy00 = _mm_sub_ps(iy0,jy0);
1618 dz00 = _mm_sub_ps(iz0,jz0);
1619 dx01 = _mm_sub_ps(ix0,jx1);
1620 dy01 = _mm_sub_ps(iy0,jy1);
1621 dz01 = _mm_sub_ps(iz0,jz1);
1622 dx02 = _mm_sub_ps(ix0,jx2);
1623 dy02 = _mm_sub_ps(iy0,jy2);
1624 dz02 = _mm_sub_ps(iz0,jz2);
1625 dx10 = _mm_sub_ps(ix1,jx0);
1626 dy10 = _mm_sub_ps(iy1,jy0);
1627 dz10 = _mm_sub_ps(iz1,jz0);
1628 dx11 = _mm_sub_ps(ix1,jx1);
1629 dy11 = _mm_sub_ps(iy1,jy1);
1630 dz11 = _mm_sub_ps(iz1,jz1);
1631 dx12 = _mm_sub_ps(ix1,jx2);
1632 dy12 = _mm_sub_ps(iy1,jy2);
1633 dz12 = _mm_sub_ps(iz1,jz2);
1634 dx20 = _mm_sub_ps(ix2,jx0);
1635 dy20 = _mm_sub_ps(iy2,jy0);
1636 dz20 = _mm_sub_ps(iz2,jz0);
1637 dx21 = _mm_sub_ps(ix2,jx1);
1638 dy21 = _mm_sub_ps(iy2,jy1);
1639 dz21 = _mm_sub_ps(iz2,jz1);
1640 dx22 = _mm_sub_ps(ix2,jx2);
1641 dy22 = _mm_sub_ps(iy2,jy2);
1642 dz22 = _mm_sub_ps(iz2,jz2);
1644 /* Calculate squared distance and things based on it */
1645 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1646 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1647 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1648 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1649 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1650 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1651 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1652 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1653 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1655 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1656 rinv01 = gmx_mm_invsqrt_ps(rsq01);
1657 rinv02 = gmx_mm_invsqrt_ps(rsq02);
1658 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1659 rinv11 = gmx_mm_invsqrt_ps(rsq11);
1660 rinv12 = gmx_mm_invsqrt_ps(rsq12);
1661 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1662 rinv21 = gmx_mm_invsqrt_ps(rsq21);
1663 rinv22 = gmx_mm_invsqrt_ps(rsq22);
1665 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1666 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1667 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1668 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1669 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1670 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1671 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1672 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1673 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1675 fjx0 = _mm_setzero_ps();
1676 fjy0 = _mm_setzero_ps();
1677 fjz0 = _mm_setzero_ps();
1678 fjx1 = _mm_setzero_ps();
1679 fjy1 = _mm_setzero_ps();
1680 fjz1 = _mm_setzero_ps();
1681 fjx2 = _mm_setzero_ps();
1682 fjy2 = _mm_setzero_ps();
1683 fjz2 = _mm_setzero_ps();
1685 /**************************
1686 * CALCULATE INTERACTIONS *
1687 **************************/
1689 if (gmx_mm_any_lt(rsq00,rcutoff2))
1692 r00 = _mm_mul_ps(rsq00,rinv00);
1694 /* EWALD ELECTROSTATICS */
1696 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1697 ewrt = _mm_mul_ps(r00,ewtabscale);
1698 ewitab = _mm_cvttps_epi32(ewrt);
1699 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1700 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1701 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1703 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1704 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
1706 /* LENNARD-JONES DISPERSION/REPULSION */
1708 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1709 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1711 cutoff_mask = _mm_cmplt_ps(rsq00,rcutoff2);
1713 fscal = _mm_add_ps(felec,fvdw);
1715 fscal = _mm_and_ps(fscal,cutoff_mask);
1717 /* Calculate temporary vectorial force */
1718 tx = _mm_mul_ps(fscal,dx00);
1719 ty = _mm_mul_ps(fscal,dy00);
1720 tz = _mm_mul_ps(fscal,dz00);
1722 /* Update vectorial force */
1723 fix0 = _mm_add_ps(fix0,tx);
1724 fiy0 = _mm_add_ps(fiy0,ty);
1725 fiz0 = _mm_add_ps(fiz0,tz);
1727 fjx0 = _mm_add_ps(fjx0,tx);
1728 fjy0 = _mm_add_ps(fjy0,ty);
1729 fjz0 = _mm_add_ps(fjz0,tz);
1733 /**************************
1734 * CALCULATE INTERACTIONS *
1735 **************************/
1737 if (gmx_mm_any_lt(rsq01,rcutoff2))
1740 r01 = _mm_mul_ps(rsq01,rinv01);
1742 /* EWALD ELECTROSTATICS */
1744 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1745 ewrt = _mm_mul_ps(r01,ewtabscale);
1746 ewitab = _mm_cvttps_epi32(ewrt);
1747 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1748 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1749 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1751 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1752 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
1754 cutoff_mask = _mm_cmplt_ps(rsq01,rcutoff2);
1758 fscal = _mm_and_ps(fscal,cutoff_mask);
1760 /* Calculate temporary vectorial force */
1761 tx = _mm_mul_ps(fscal,dx01);
1762 ty = _mm_mul_ps(fscal,dy01);
1763 tz = _mm_mul_ps(fscal,dz01);
1765 /* Update vectorial force */
1766 fix0 = _mm_add_ps(fix0,tx);
1767 fiy0 = _mm_add_ps(fiy0,ty);
1768 fiz0 = _mm_add_ps(fiz0,tz);
1770 fjx1 = _mm_add_ps(fjx1,tx);
1771 fjy1 = _mm_add_ps(fjy1,ty);
1772 fjz1 = _mm_add_ps(fjz1,tz);
1776 /**************************
1777 * CALCULATE INTERACTIONS *
1778 **************************/
1780 if (gmx_mm_any_lt(rsq02,rcutoff2))
1783 r02 = _mm_mul_ps(rsq02,rinv02);
1785 /* EWALD ELECTROSTATICS */
1787 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1788 ewrt = _mm_mul_ps(r02,ewtabscale);
1789 ewitab = _mm_cvttps_epi32(ewrt);
1790 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1791 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1792 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1794 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1795 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
1797 cutoff_mask = _mm_cmplt_ps(rsq02,rcutoff2);
1801 fscal = _mm_and_ps(fscal,cutoff_mask);
1803 /* Calculate temporary vectorial force */
1804 tx = _mm_mul_ps(fscal,dx02);
1805 ty = _mm_mul_ps(fscal,dy02);
1806 tz = _mm_mul_ps(fscal,dz02);
1808 /* Update vectorial force */
1809 fix0 = _mm_add_ps(fix0,tx);
1810 fiy0 = _mm_add_ps(fiy0,ty);
1811 fiz0 = _mm_add_ps(fiz0,tz);
1813 fjx2 = _mm_add_ps(fjx2,tx);
1814 fjy2 = _mm_add_ps(fjy2,ty);
1815 fjz2 = _mm_add_ps(fjz2,tz);
1819 /**************************
1820 * CALCULATE INTERACTIONS *
1821 **************************/
1823 if (gmx_mm_any_lt(rsq10,rcutoff2))
1826 r10 = _mm_mul_ps(rsq10,rinv10);
1828 /* EWALD ELECTROSTATICS */
1830 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1831 ewrt = _mm_mul_ps(r10,ewtabscale);
1832 ewitab = _mm_cvttps_epi32(ewrt);
1833 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1834 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1835 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1837 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1838 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1840 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
1844 fscal = _mm_and_ps(fscal,cutoff_mask);
1846 /* Calculate temporary vectorial force */
1847 tx = _mm_mul_ps(fscal,dx10);
1848 ty = _mm_mul_ps(fscal,dy10);
1849 tz = _mm_mul_ps(fscal,dz10);
1851 /* Update vectorial force */
1852 fix1 = _mm_add_ps(fix1,tx);
1853 fiy1 = _mm_add_ps(fiy1,ty);
1854 fiz1 = _mm_add_ps(fiz1,tz);
1856 fjx0 = _mm_add_ps(fjx0,tx);
1857 fjy0 = _mm_add_ps(fjy0,ty);
1858 fjz0 = _mm_add_ps(fjz0,tz);
1862 /**************************
1863 * CALCULATE INTERACTIONS *
1864 **************************/
1866 if (gmx_mm_any_lt(rsq11,rcutoff2))
1869 r11 = _mm_mul_ps(rsq11,rinv11);
1871 /* EWALD ELECTROSTATICS */
1873 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1874 ewrt = _mm_mul_ps(r11,ewtabscale);
1875 ewitab = _mm_cvttps_epi32(ewrt);
1876 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1877 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1878 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1880 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1881 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
1883 cutoff_mask = _mm_cmplt_ps(rsq11,rcutoff2);
1887 fscal = _mm_and_ps(fscal,cutoff_mask);
1889 /* Calculate temporary vectorial force */
1890 tx = _mm_mul_ps(fscal,dx11);
1891 ty = _mm_mul_ps(fscal,dy11);
1892 tz = _mm_mul_ps(fscal,dz11);
1894 /* Update vectorial force */
1895 fix1 = _mm_add_ps(fix1,tx);
1896 fiy1 = _mm_add_ps(fiy1,ty);
1897 fiz1 = _mm_add_ps(fiz1,tz);
1899 fjx1 = _mm_add_ps(fjx1,tx);
1900 fjy1 = _mm_add_ps(fjy1,ty);
1901 fjz1 = _mm_add_ps(fjz1,tz);
1905 /**************************
1906 * CALCULATE INTERACTIONS *
1907 **************************/
1909 if (gmx_mm_any_lt(rsq12,rcutoff2))
1912 r12 = _mm_mul_ps(rsq12,rinv12);
1914 /* EWALD ELECTROSTATICS */
1916 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1917 ewrt = _mm_mul_ps(r12,ewtabscale);
1918 ewitab = _mm_cvttps_epi32(ewrt);
1919 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1920 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1921 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1923 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1924 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
1926 cutoff_mask = _mm_cmplt_ps(rsq12,rcutoff2);
1930 fscal = _mm_and_ps(fscal,cutoff_mask);
1932 /* Calculate temporary vectorial force */
1933 tx = _mm_mul_ps(fscal,dx12);
1934 ty = _mm_mul_ps(fscal,dy12);
1935 tz = _mm_mul_ps(fscal,dz12);
1937 /* Update vectorial force */
1938 fix1 = _mm_add_ps(fix1,tx);
1939 fiy1 = _mm_add_ps(fiy1,ty);
1940 fiz1 = _mm_add_ps(fiz1,tz);
1942 fjx2 = _mm_add_ps(fjx2,tx);
1943 fjy2 = _mm_add_ps(fjy2,ty);
1944 fjz2 = _mm_add_ps(fjz2,tz);
1948 /**************************
1949 * CALCULATE INTERACTIONS *
1950 **************************/
1952 if (gmx_mm_any_lt(rsq20,rcutoff2))
1955 r20 = _mm_mul_ps(rsq20,rinv20);
1957 /* EWALD ELECTROSTATICS */
1959 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1960 ewrt = _mm_mul_ps(r20,ewtabscale);
1961 ewitab = _mm_cvttps_epi32(ewrt);
1962 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
1963 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
1964 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
1966 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1967 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1969 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
1973 fscal = _mm_and_ps(fscal,cutoff_mask);
1975 /* Calculate temporary vectorial force */
1976 tx = _mm_mul_ps(fscal,dx20);
1977 ty = _mm_mul_ps(fscal,dy20);
1978 tz = _mm_mul_ps(fscal,dz20);
1980 /* Update vectorial force */
1981 fix2 = _mm_add_ps(fix2,tx);
1982 fiy2 = _mm_add_ps(fiy2,ty);
1983 fiz2 = _mm_add_ps(fiz2,tz);
1985 fjx0 = _mm_add_ps(fjx0,tx);
1986 fjy0 = _mm_add_ps(fjy0,ty);
1987 fjz0 = _mm_add_ps(fjz0,tz);
1991 /**************************
1992 * CALCULATE INTERACTIONS *
1993 **************************/
1995 if (gmx_mm_any_lt(rsq21,rcutoff2))
1998 r21 = _mm_mul_ps(rsq21,rinv21);
2000 /* EWALD ELECTROSTATICS */
2002 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2003 ewrt = _mm_mul_ps(r21,ewtabscale);
2004 ewitab = _mm_cvttps_epi32(ewrt);
2005 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2006 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2007 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2009 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2010 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
2012 cutoff_mask = _mm_cmplt_ps(rsq21,rcutoff2);
2016 fscal = _mm_and_ps(fscal,cutoff_mask);
2018 /* Calculate temporary vectorial force */
2019 tx = _mm_mul_ps(fscal,dx21);
2020 ty = _mm_mul_ps(fscal,dy21);
2021 tz = _mm_mul_ps(fscal,dz21);
2023 /* Update vectorial force */
2024 fix2 = _mm_add_ps(fix2,tx);
2025 fiy2 = _mm_add_ps(fiy2,ty);
2026 fiz2 = _mm_add_ps(fiz2,tz);
2028 fjx1 = _mm_add_ps(fjx1,tx);
2029 fjy1 = _mm_add_ps(fjy1,ty);
2030 fjz1 = _mm_add_ps(fjz1,tz);
2034 /**************************
2035 * CALCULATE INTERACTIONS *
2036 **************************/
2038 if (gmx_mm_any_lt(rsq22,rcutoff2))
2041 r22 = _mm_mul_ps(rsq22,rinv22);
2043 /* EWALD ELECTROSTATICS */
2045 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2046 ewrt = _mm_mul_ps(r22,ewtabscale);
2047 ewitab = _mm_cvttps_epi32(ewrt);
2048 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2049 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2050 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2052 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2053 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
2055 cutoff_mask = _mm_cmplt_ps(rsq22,rcutoff2);
2059 fscal = _mm_and_ps(fscal,cutoff_mask);
2061 /* Calculate temporary vectorial force */
2062 tx = _mm_mul_ps(fscal,dx22);
2063 ty = _mm_mul_ps(fscal,dy22);
2064 tz = _mm_mul_ps(fscal,dz22);
2066 /* Update vectorial force */
2067 fix2 = _mm_add_ps(fix2,tx);
2068 fiy2 = _mm_add_ps(fiy2,ty);
2069 fiz2 = _mm_add_ps(fiz2,tz);
2071 fjx2 = _mm_add_ps(fjx2,tx);
2072 fjy2 = _mm_add_ps(fjy2,ty);
2073 fjz2 = _mm_add_ps(fjz2,tz);
2077 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
2078 f+j_coord_offsetC,f+j_coord_offsetD,
2079 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2081 /* Inner loop uses 358 flops */
2084 if(jidx<j_index_end)
2087 /* Get j neighbor index, and coordinate index */
2089 jnrB = jjnr[jidx+1];
2090 jnrC = jjnr[jidx+2];
2091 jnrD = jjnr[jidx+3];
2093 /* Sign of each element will be negative for non-real atoms.
2094 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
2095 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
2097 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
2098 jnrA = (jnrA>=0) ? jnrA : 0;
2099 jnrB = (jnrB>=0) ? jnrB : 0;
2100 jnrC = (jnrC>=0) ? jnrC : 0;
2101 jnrD = (jnrD>=0) ? jnrD : 0;
2103 j_coord_offsetA = DIM*jnrA;
2104 j_coord_offsetB = DIM*jnrB;
2105 j_coord_offsetC = DIM*jnrC;
2106 j_coord_offsetD = DIM*jnrD;
2108 /* load j atom coordinates */
2109 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
2110 x+j_coord_offsetC,x+j_coord_offsetD,
2111 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
2113 /* Calculate displacement vector */
2114 dx00 = _mm_sub_ps(ix0,jx0);
2115 dy00 = _mm_sub_ps(iy0,jy0);
2116 dz00 = _mm_sub_ps(iz0,jz0);
2117 dx01 = _mm_sub_ps(ix0,jx1);
2118 dy01 = _mm_sub_ps(iy0,jy1);
2119 dz01 = _mm_sub_ps(iz0,jz1);
2120 dx02 = _mm_sub_ps(ix0,jx2);
2121 dy02 = _mm_sub_ps(iy0,jy2);
2122 dz02 = _mm_sub_ps(iz0,jz2);
2123 dx10 = _mm_sub_ps(ix1,jx0);
2124 dy10 = _mm_sub_ps(iy1,jy0);
2125 dz10 = _mm_sub_ps(iz1,jz0);
2126 dx11 = _mm_sub_ps(ix1,jx1);
2127 dy11 = _mm_sub_ps(iy1,jy1);
2128 dz11 = _mm_sub_ps(iz1,jz1);
2129 dx12 = _mm_sub_ps(ix1,jx2);
2130 dy12 = _mm_sub_ps(iy1,jy2);
2131 dz12 = _mm_sub_ps(iz1,jz2);
2132 dx20 = _mm_sub_ps(ix2,jx0);
2133 dy20 = _mm_sub_ps(iy2,jy0);
2134 dz20 = _mm_sub_ps(iz2,jz0);
2135 dx21 = _mm_sub_ps(ix2,jx1);
2136 dy21 = _mm_sub_ps(iy2,jy1);
2137 dz21 = _mm_sub_ps(iz2,jz1);
2138 dx22 = _mm_sub_ps(ix2,jx2);
2139 dy22 = _mm_sub_ps(iy2,jy2);
2140 dz22 = _mm_sub_ps(iz2,jz2);
2142 /* Calculate squared distance and things based on it */
2143 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
2144 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
2145 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
2146 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
2147 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
2148 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
2149 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
2150 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
2151 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
2153 rinv00 = gmx_mm_invsqrt_ps(rsq00);
2154 rinv01 = gmx_mm_invsqrt_ps(rsq01);
2155 rinv02 = gmx_mm_invsqrt_ps(rsq02);
2156 rinv10 = gmx_mm_invsqrt_ps(rsq10);
2157 rinv11 = gmx_mm_invsqrt_ps(rsq11);
2158 rinv12 = gmx_mm_invsqrt_ps(rsq12);
2159 rinv20 = gmx_mm_invsqrt_ps(rsq20);
2160 rinv21 = gmx_mm_invsqrt_ps(rsq21);
2161 rinv22 = gmx_mm_invsqrt_ps(rsq22);
2163 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
2164 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
2165 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
2166 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
2167 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
2168 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
2169 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
2170 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
2171 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
2173 fjx0 = _mm_setzero_ps();
2174 fjy0 = _mm_setzero_ps();
2175 fjz0 = _mm_setzero_ps();
2176 fjx1 = _mm_setzero_ps();
2177 fjy1 = _mm_setzero_ps();
2178 fjz1 = _mm_setzero_ps();
2179 fjx2 = _mm_setzero_ps();
2180 fjy2 = _mm_setzero_ps();
2181 fjz2 = _mm_setzero_ps();
2183 /**************************
2184 * CALCULATE INTERACTIONS *
2185 **************************/
2187 if (gmx_mm_any_lt(rsq00,rcutoff2))
2190 r00 = _mm_mul_ps(rsq00,rinv00);
2191 r00 = _mm_andnot_ps(dummy_mask,r00);
2193 /* EWALD ELECTROSTATICS */
2195 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2196 ewrt = _mm_mul_ps(r00,ewtabscale);
2197 ewitab = _mm_cvttps_epi32(ewrt);
2198 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2199 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2200 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2202 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2203 felec = _mm_mul_ps(_mm_mul_ps(qq00,rinv00),_mm_sub_ps(rinvsq00,felec));
2205 /* LENNARD-JONES DISPERSION/REPULSION */
2207 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
2208 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
2210 cutoff_mask = _mm_cmplt_ps(rsq00,rcutoff2);
2212 fscal = _mm_add_ps(felec,fvdw);
2214 fscal = _mm_and_ps(fscal,cutoff_mask);
2216 fscal = _mm_andnot_ps(dummy_mask,fscal);
2218 /* Calculate temporary vectorial force */
2219 tx = _mm_mul_ps(fscal,dx00);
2220 ty = _mm_mul_ps(fscal,dy00);
2221 tz = _mm_mul_ps(fscal,dz00);
2223 /* Update vectorial force */
2224 fix0 = _mm_add_ps(fix0,tx);
2225 fiy0 = _mm_add_ps(fiy0,ty);
2226 fiz0 = _mm_add_ps(fiz0,tz);
2228 fjx0 = _mm_add_ps(fjx0,tx);
2229 fjy0 = _mm_add_ps(fjy0,ty);
2230 fjz0 = _mm_add_ps(fjz0,tz);
2234 /**************************
2235 * CALCULATE INTERACTIONS *
2236 **************************/
2238 if (gmx_mm_any_lt(rsq01,rcutoff2))
2241 r01 = _mm_mul_ps(rsq01,rinv01);
2242 r01 = _mm_andnot_ps(dummy_mask,r01);
2244 /* EWALD ELECTROSTATICS */
2246 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2247 ewrt = _mm_mul_ps(r01,ewtabscale);
2248 ewitab = _mm_cvttps_epi32(ewrt);
2249 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2250 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2251 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2253 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2254 felec = _mm_mul_ps(_mm_mul_ps(qq01,rinv01),_mm_sub_ps(rinvsq01,felec));
2256 cutoff_mask = _mm_cmplt_ps(rsq01,rcutoff2);
2260 fscal = _mm_and_ps(fscal,cutoff_mask);
2262 fscal = _mm_andnot_ps(dummy_mask,fscal);
2264 /* Calculate temporary vectorial force */
2265 tx = _mm_mul_ps(fscal,dx01);
2266 ty = _mm_mul_ps(fscal,dy01);
2267 tz = _mm_mul_ps(fscal,dz01);
2269 /* Update vectorial force */
2270 fix0 = _mm_add_ps(fix0,tx);
2271 fiy0 = _mm_add_ps(fiy0,ty);
2272 fiz0 = _mm_add_ps(fiz0,tz);
2274 fjx1 = _mm_add_ps(fjx1,tx);
2275 fjy1 = _mm_add_ps(fjy1,ty);
2276 fjz1 = _mm_add_ps(fjz1,tz);
2280 /**************************
2281 * CALCULATE INTERACTIONS *
2282 **************************/
2284 if (gmx_mm_any_lt(rsq02,rcutoff2))
2287 r02 = _mm_mul_ps(rsq02,rinv02);
2288 r02 = _mm_andnot_ps(dummy_mask,r02);
2290 /* EWALD ELECTROSTATICS */
2292 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2293 ewrt = _mm_mul_ps(r02,ewtabscale);
2294 ewitab = _mm_cvttps_epi32(ewrt);
2295 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2296 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2297 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2299 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2300 felec = _mm_mul_ps(_mm_mul_ps(qq02,rinv02),_mm_sub_ps(rinvsq02,felec));
2302 cutoff_mask = _mm_cmplt_ps(rsq02,rcutoff2);
2306 fscal = _mm_and_ps(fscal,cutoff_mask);
2308 fscal = _mm_andnot_ps(dummy_mask,fscal);
2310 /* Calculate temporary vectorial force */
2311 tx = _mm_mul_ps(fscal,dx02);
2312 ty = _mm_mul_ps(fscal,dy02);
2313 tz = _mm_mul_ps(fscal,dz02);
2315 /* Update vectorial force */
2316 fix0 = _mm_add_ps(fix0,tx);
2317 fiy0 = _mm_add_ps(fiy0,ty);
2318 fiz0 = _mm_add_ps(fiz0,tz);
2320 fjx2 = _mm_add_ps(fjx2,tx);
2321 fjy2 = _mm_add_ps(fjy2,ty);
2322 fjz2 = _mm_add_ps(fjz2,tz);
2326 /**************************
2327 * CALCULATE INTERACTIONS *
2328 **************************/
2330 if (gmx_mm_any_lt(rsq10,rcutoff2))
2333 r10 = _mm_mul_ps(rsq10,rinv10);
2334 r10 = _mm_andnot_ps(dummy_mask,r10);
2336 /* EWALD ELECTROSTATICS */
2338 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2339 ewrt = _mm_mul_ps(r10,ewtabscale);
2340 ewitab = _mm_cvttps_epi32(ewrt);
2341 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2342 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2343 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2345 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2346 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
2348 cutoff_mask = _mm_cmplt_ps(rsq10,rcutoff2);
2352 fscal = _mm_and_ps(fscal,cutoff_mask);
2354 fscal = _mm_andnot_ps(dummy_mask,fscal);
2356 /* Calculate temporary vectorial force */
2357 tx = _mm_mul_ps(fscal,dx10);
2358 ty = _mm_mul_ps(fscal,dy10);
2359 tz = _mm_mul_ps(fscal,dz10);
2361 /* Update vectorial force */
2362 fix1 = _mm_add_ps(fix1,tx);
2363 fiy1 = _mm_add_ps(fiy1,ty);
2364 fiz1 = _mm_add_ps(fiz1,tz);
2366 fjx0 = _mm_add_ps(fjx0,tx);
2367 fjy0 = _mm_add_ps(fjy0,ty);
2368 fjz0 = _mm_add_ps(fjz0,tz);
2372 /**************************
2373 * CALCULATE INTERACTIONS *
2374 **************************/
2376 if (gmx_mm_any_lt(rsq11,rcutoff2))
2379 r11 = _mm_mul_ps(rsq11,rinv11);
2380 r11 = _mm_andnot_ps(dummy_mask,r11);
2382 /* EWALD ELECTROSTATICS */
2384 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2385 ewrt = _mm_mul_ps(r11,ewtabscale);
2386 ewitab = _mm_cvttps_epi32(ewrt);
2387 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2388 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2389 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2391 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2392 felec = _mm_mul_ps(_mm_mul_ps(qq11,rinv11),_mm_sub_ps(rinvsq11,felec));
2394 cutoff_mask = _mm_cmplt_ps(rsq11,rcutoff2);
2398 fscal = _mm_and_ps(fscal,cutoff_mask);
2400 fscal = _mm_andnot_ps(dummy_mask,fscal);
2402 /* Calculate temporary vectorial force */
2403 tx = _mm_mul_ps(fscal,dx11);
2404 ty = _mm_mul_ps(fscal,dy11);
2405 tz = _mm_mul_ps(fscal,dz11);
2407 /* Update vectorial force */
2408 fix1 = _mm_add_ps(fix1,tx);
2409 fiy1 = _mm_add_ps(fiy1,ty);
2410 fiz1 = _mm_add_ps(fiz1,tz);
2412 fjx1 = _mm_add_ps(fjx1,tx);
2413 fjy1 = _mm_add_ps(fjy1,ty);
2414 fjz1 = _mm_add_ps(fjz1,tz);
2418 /**************************
2419 * CALCULATE INTERACTIONS *
2420 **************************/
2422 if (gmx_mm_any_lt(rsq12,rcutoff2))
2425 r12 = _mm_mul_ps(rsq12,rinv12);
2426 r12 = _mm_andnot_ps(dummy_mask,r12);
2428 /* EWALD ELECTROSTATICS */
2430 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2431 ewrt = _mm_mul_ps(r12,ewtabscale);
2432 ewitab = _mm_cvttps_epi32(ewrt);
2433 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2434 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2435 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2437 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2438 felec = _mm_mul_ps(_mm_mul_ps(qq12,rinv12),_mm_sub_ps(rinvsq12,felec));
2440 cutoff_mask = _mm_cmplt_ps(rsq12,rcutoff2);
2444 fscal = _mm_and_ps(fscal,cutoff_mask);
2446 fscal = _mm_andnot_ps(dummy_mask,fscal);
2448 /* Calculate temporary vectorial force */
2449 tx = _mm_mul_ps(fscal,dx12);
2450 ty = _mm_mul_ps(fscal,dy12);
2451 tz = _mm_mul_ps(fscal,dz12);
2453 /* Update vectorial force */
2454 fix1 = _mm_add_ps(fix1,tx);
2455 fiy1 = _mm_add_ps(fiy1,ty);
2456 fiz1 = _mm_add_ps(fiz1,tz);
2458 fjx2 = _mm_add_ps(fjx2,tx);
2459 fjy2 = _mm_add_ps(fjy2,ty);
2460 fjz2 = _mm_add_ps(fjz2,tz);
2464 /**************************
2465 * CALCULATE INTERACTIONS *
2466 **************************/
2468 if (gmx_mm_any_lt(rsq20,rcutoff2))
2471 r20 = _mm_mul_ps(rsq20,rinv20);
2472 r20 = _mm_andnot_ps(dummy_mask,r20);
2474 /* EWALD ELECTROSTATICS */
2476 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2477 ewrt = _mm_mul_ps(r20,ewtabscale);
2478 ewitab = _mm_cvttps_epi32(ewrt);
2479 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2480 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2481 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2483 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2484 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
2486 cutoff_mask = _mm_cmplt_ps(rsq20,rcutoff2);
2490 fscal = _mm_and_ps(fscal,cutoff_mask);
2492 fscal = _mm_andnot_ps(dummy_mask,fscal);
2494 /* Calculate temporary vectorial force */
2495 tx = _mm_mul_ps(fscal,dx20);
2496 ty = _mm_mul_ps(fscal,dy20);
2497 tz = _mm_mul_ps(fscal,dz20);
2499 /* Update vectorial force */
2500 fix2 = _mm_add_ps(fix2,tx);
2501 fiy2 = _mm_add_ps(fiy2,ty);
2502 fiz2 = _mm_add_ps(fiz2,tz);
2504 fjx0 = _mm_add_ps(fjx0,tx);
2505 fjy0 = _mm_add_ps(fjy0,ty);
2506 fjz0 = _mm_add_ps(fjz0,tz);
2510 /**************************
2511 * CALCULATE INTERACTIONS *
2512 **************************/
2514 if (gmx_mm_any_lt(rsq21,rcutoff2))
2517 r21 = _mm_mul_ps(rsq21,rinv21);
2518 r21 = _mm_andnot_ps(dummy_mask,r21);
2520 /* EWALD ELECTROSTATICS */
2522 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2523 ewrt = _mm_mul_ps(r21,ewtabscale);
2524 ewitab = _mm_cvttps_epi32(ewrt);
2525 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2526 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2527 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2529 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2530 felec = _mm_mul_ps(_mm_mul_ps(qq21,rinv21),_mm_sub_ps(rinvsq21,felec));
2532 cutoff_mask = _mm_cmplt_ps(rsq21,rcutoff2);
2536 fscal = _mm_and_ps(fscal,cutoff_mask);
2538 fscal = _mm_andnot_ps(dummy_mask,fscal);
2540 /* Calculate temporary vectorial force */
2541 tx = _mm_mul_ps(fscal,dx21);
2542 ty = _mm_mul_ps(fscal,dy21);
2543 tz = _mm_mul_ps(fscal,dz21);
2545 /* Update vectorial force */
2546 fix2 = _mm_add_ps(fix2,tx);
2547 fiy2 = _mm_add_ps(fiy2,ty);
2548 fiz2 = _mm_add_ps(fiz2,tz);
2550 fjx1 = _mm_add_ps(fjx1,tx);
2551 fjy1 = _mm_add_ps(fjy1,ty);
2552 fjz1 = _mm_add_ps(fjz1,tz);
2556 /**************************
2557 * CALCULATE INTERACTIONS *
2558 **************************/
2560 if (gmx_mm_any_lt(rsq22,rcutoff2))
2563 r22 = _mm_mul_ps(rsq22,rinv22);
2564 r22 = _mm_andnot_ps(dummy_mask,r22);
2566 /* EWALD ELECTROSTATICS */
2568 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
2569 ewrt = _mm_mul_ps(r22,ewtabscale);
2570 ewitab = _mm_cvttps_epi32(ewrt);
2571 eweps = _mm_sub_ps(ewrt,_mm_cvtepi32_ps(ewitab));
2572 gmx_mm_load_4pair_swizzle_ps(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
2573 ewtab+gmx_mm_extract_epi32(ewitab,2),ewtab+gmx_mm_extract_epi32(ewitab,3),
2575 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
2576 felec = _mm_mul_ps(_mm_mul_ps(qq22,rinv22),_mm_sub_ps(rinvsq22,felec));
2578 cutoff_mask = _mm_cmplt_ps(rsq22,rcutoff2);
2582 fscal = _mm_and_ps(fscal,cutoff_mask);
2584 fscal = _mm_andnot_ps(dummy_mask,fscal);
2586 /* Calculate temporary vectorial force */
2587 tx = _mm_mul_ps(fscal,dx22);
2588 ty = _mm_mul_ps(fscal,dy22);
2589 tz = _mm_mul_ps(fscal,dz22);
2591 /* Update vectorial force */
2592 fix2 = _mm_add_ps(fix2,tx);
2593 fiy2 = _mm_add_ps(fiy2,ty);
2594 fiz2 = _mm_add_ps(fiz2,tz);
2596 fjx2 = _mm_add_ps(fjx2,tx);
2597 fjy2 = _mm_add_ps(fjy2,ty);
2598 fjz2 = _mm_add_ps(fjz2,tz);
2602 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
2603 f+j_coord_offsetC,f+j_coord_offsetD,
2604 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
2606 /* Inner loop uses 367 flops */
2609 /* End of innermost loop */
2611 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
2612 f+i_coord_offset,fshift+i_shift_offset);
2614 /* Increment number of inner iterations */
2615 inneriter += j_index_end - j_index_start;
2617 /* Outer loop uses 27 flops */
2620 /* Increment number of outer iterations */
2623 /* Update outer/inner flops */
2625 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*27 + inneriter*367);