2 * Note: this file was generated by the Gromacs sse2_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
38 * Electrostatics interaction: CubicSplineTable
39 * VdW interaction: LennardJones
40 * Geometry: Water4-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
63 real shX,shY,shZ,rcutoff_scalar;
64 real *shiftvec,*fshift,*x,*f;
65 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
69 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
71 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
73 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
74 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
75 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
76 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
77 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
78 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
79 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
80 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
83 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
86 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
87 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
89 __m128i ifour = _mm_set1_epi32(4);
90 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
92 __m128 dummy_mask,cutoff_mask;
93 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
94 __m128 one = _mm_set1_ps(1.0);
95 __m128 two = _mm_set1_ps(2.0);
101 jindex = nlist->jindex;
103 shiftidx = nlist->shift;
105 shiftvec = fr->shift_vec[0];
106 fshift = fr->fshift[0];
107 facel = _mm_set1_ps(fr->epsfac);
108 charge = mdatoms->chargeA;
109 nvdwtype = fr->ntype;
111 vdwtype = mdatoms->typeA;
113 vftab = kernel_data->table_elec->data;
114 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
116 /* Setup water-specific parameters */
117 inr = nlist->iinr[0];
118 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
119 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
120 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
121 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
123 /* Avoid stupid compiler warnings */
124 jnrA = jnrB = jnrC = jnrD = 0;
133 /* Start outer loop over neighborlists */
134 for(iidx=0; iidx<nri; iidx++)
136 /* Load shift vector for this list */
137 i_shift_offset = DIM*shiftidx[iidx];
138 shX = shiftvec[i_shift_offset+XX];
139 shY = shiftvec[i_shift_offset+YY];
140 shZ = shiftvec[i_shift_offset+ZZ];
142 /* Load limits for loop over neighbors */
143 j_index_start = jindex[iidx];
144 j_index_end = jindex[iidx+1];
146 /* Get outer coordinate index */
148 i_coord_offset = DIM*inr;
150 /* Load i particle coords and add shift vector */
151 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
152 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
153 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
154 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
155 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
156 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
157 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
158 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
159 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
160 ix3 = _mm_set1_ps(shX + x[i_coord_offset+DIM*3+XX]);
161 iy3 = _mm_set1_ps(shY + x[i_coord_offset+DIM*3+YY]);
162 iz3 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*3+ZZ]);
164 fix0 = _mm_setzero_ps();
165 fiy0 = _mm_setzero_ps();
166 fiz0 = _mm_setzero_ps();
167 fix1 = _mm_setzero_ps();
168 fiy1 = _mm_setzero_ps();
169 fiz1 = _mm_setzero_ps();
170 fix2 = _mm_setzero_ps();
171 fiy2 = _mm_setzero_ps();
172 fiz2 = _mm_setzero_ps();
173 fix3 = _mm_setzero_ps();
174 fiy3 = _mm_setzero_ps();
175 fiz3 = _mm_setzero_ps();
177 /* Reset potential sums */
178 velecsum = _mm_setzero_ps();
179 vvdwsum = _mm_setzero_ps();
181 /* Start inner kernel loop */
182 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
185 /* Get j neighbor index, and coordinate index */
191 j_coord_offsetA = DIM*jnrA;
192 j_coord_offsetB = DIM*jnrB;
193 j_coord_offsetC = DIM*jnrC;
194 j_coord_offsetD = DIM*jnrD;
196 /* load j atom coordinates */
197 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
198 x+j_coord_offsetC,x+j_coord_offsetD,
201 /* Calculate displacement vector */
202 dx00 = _mm_sub_ps(ix0,jx0);
203 dy00 = _mm_sub_ps(iy0,jy0);
204 dz00 = _mm_sub_ps(iz0,jz0);
205 dx10 = _mm_sub_ps(ix1,jx0);
206 dy10 = _mm_sub_ps(iy1,jy0);
207 dz10 = _mm_sub_ps(iz1,jz0);
208 dx20 = _mm_sub_ps(ix2,jx0);
209 dy20 = _mm_sub_ps(iy2,jy0);
210 dz20 = _mm_sub_ps(iz2,jz0);
211 dx30 = _mm_sub_ps(ix3,jx0);
212 dy30 = _mm_sub_ps(iy3,jy0);
213 dz30 = _mm_sub_ps(iz3,jz0);
215 /* Calculate squared distance and things based on it */
216 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
217 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
218 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
219 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
221 rinv10 = gmx_mm_invsqrt_ps(rsq10);
222 rinv20 = gmx_mm_invsqrt_ps(rsq20);
223 rinv30 = gmx_mm_invsqrt_ps(rsq30);
225 rinvsq00 = gmx_mm_inv_ps(rsq00);
227 /* Load parameters for j particles */
228 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
229 charge+jnrC+0,charge+jnrD+0);
230 vdwjidx0A = 2*vdwtype[jnrA+0];
231 vdwjidx0B = 2*vdwtype[jnrB+0];
232 vdwjidx0C = 2*vdwtype[jnrC+0];
233 vdwjidx0D = 2*vdwtype[jnrD+0];
235 /**************************
236 * CALCULATE INTERACTIONS *
237 **************************/
239 /* Compute parameters for interactions between i and j atoms */
240 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
241 vdwparam+vdwioffset0+vdwjidx0B,
242 vdwparam+vdwioffset0+vdwjidx0C,
243 vdwparam+vdwioffset0+vdwjidx0D,
246 /* LENNARD-JONES DISPERSION/REPULSION */
248 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
249 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
250 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
251 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
252 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
254 /* Update potential sum for this i atom from the interaction with this j atom. */
255 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
259 /* Calculate temporary vectorial force */
260 tx = _mm_mul_ps(fscal,dx00);
261 ty = _mm_mul_ps(fscal,dy00);
262 tz = _mm_mul_ps(fscal,dz00);
264 /* Update vectorial force */
265 fix0 = _mm_add_ps(fix0,tx);
266 fiy0 = _mm_add_ps(fiy0,ty);
267 fiz0 = _mm_add_ps(fiz0,tz);
269 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
270 f+j_coord_offsetC,f+j_coord_offsetD,
273 /**************************
274 * CALCULATE INTERACTIONS *
275 **************************/
277 r10 = _mm_mul_ps(rsq10,rinv10);
279 /* Compute parameters for interactions between i and j atoms */
280 qq10 = _mm_mul_ps(iq1,jq0);
282 /* Calculate table index by multiplying r with table scale and truncate to integer */
283 rt = _mm_mul_ps(r10,vftabscale);
284 vfitab = _mm_cvttps_epi32(rt);
285 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
286 vfitab = _mm_slli_epi32(vfitab,2);
288 /* CUBIC SPLINE TABLE ELECTROSTATICS */
289 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
290 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
291 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
292 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
293 _MM_TRANSPOSE4_PS(Y,F,G,H);
294 Heps = _mm_mul_ps(vfeps,H);
295 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
296 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
297 velec = _mm_mul_ps(qq10,VV);
298 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
299 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
301 /* Update potential sum for this i atom from the interaction with this j atom. */
302 velecsum = _mm_add_ps(velecsum,velec);
306 /* Calculate temporary vectorial force */
307 tx = _mm_mul_ps(fscal,dx10);
308 ty = _mm_mul_ps(fscal,dy10);
309 tz = _mm_mul_ps(fscal,dz10);
311 /* Update vectorial force */
312 fix1 = _mm_add_ps(fix1,tx);
313 fiy1 = _mm_add_ps(fiy1,ty);
314 fiz1 = _mm_add_ps(fiz1,tz);
316 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
317 f+j_coord_offsetC,f+j_coord_offsetD,
320 /**************************
321 * CALCULATE INTERACTIONS *
322 **************************/
324 r20 = _mm_mul_ps(rsq20,rinv20);
326 /* Compute parameters for interactions between i and j atoms */
327 qq20 = _mm_mul_ps(iq2,jq0);
329 /* Calculate table index by multiplying r with table scale and truncate to integer */
330 rt = _mm_mul_ps(r20,vftabscale);
331 vfitab = _mm_cvttps_epi32(rt);
332 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
333 vfitab = _mm_slli_epi32(vfitab,2);
335 /* CUBIC SPLINE TABLE ELECTROSTATICS */
336 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
337 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
338 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
339 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
340 _MM_TRANSPOSE4_PS(Y,F,G,H);
341 Heps = _mm_mul_ps(vfeps,H);
342 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
343 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
344 velec = _mm_mul_ps(qq20,VV);
345 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
346 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
348 /* Update potential sum for this i atom from the interaction with this j atom. */
349 velecsum = _mm_add_ps(velecsum,velec);
353 /* Calculate temporary vectorial force */
354 tx = _mm_mul_ps(fscal,dx20);
355 ty = _mm_mul_ps(fscal,dy20);
356 tz = _mm_mul_ps(fscal,dz20);
358 /* Update vectorial force */
359 fix2 = _mm_add_ps(fix2,tx);
360 fiy2 = _mm_add_ps(fiy2,ty);
361 fiz2 = _mm_add_ps(fiz2,tz);
363 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
364 f+j_coord_offsetC,f+j_coord_offsetD,
367 /**************************
368 * CALCULATE INTERACTIONS *
369 **************************/
371 r30 = _mm_mul_ps(rsq30,rinv30);
373 /* Compute parameters for interactions between i and j atoms */
374 qq30 = _mm_mul_ps(iq3,jq0);
376 /* Calculate table index by multiplying r with table scale and truncate to integer */
377 rt = _mm_mul_ps(r30,vftabscale);
378 vfitab = _mm_cvttps_epi32(rt);
379 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
380 vfitab = _mm_slli_epi32(vfitab,2);
382 /* CUBIC SPLINE TABLE ELECTROSTATICS */
383 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
384 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
385 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
386 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
387 _MM_TRANSPOSE4_PS(Y,F,G,H);
388 Heps = _mm_mul_ps(vfeps,H);
389 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
390 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
391 velec = _mm_mul_ps(qq30,VV);
392 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
393 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
395 /* Update potential sum for this i atom from the interaction with this j atom. */
396 velecsum = _mm_add_ps(velecsum,velec);
400 /* Calculate temporary vectorial force */
401 tx = _mm_mul_ps(fscal,dx30);
402 ty = _mm_mul_ps(fscal,dy30);
403 tz = _mm_mul_ps(fscal,dz30);
405 /* Update vectorial force */
406 fix3 = _mm_add_ps(fix3,tx);
407 fiy3 = _mm_add_ps(fiy3,ty);
408 fiz3 = _mm_add_ps(fiz3,tz);
410 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
411 f+j_coord_offsetC,f+j_coord_offsetD,
414 /* Inner loop uses 161 flops */
420 /* Get j neighbor index, and coordinate index */
426 /* Sign of each element will be negative for non-real atoms.
427 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
428 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
430 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
431 jnrA = (jnrA>=0) ? jnrA : 0;
432 jnrB = (jnrB>=0) ? jnrB : 0;
433 jnrC = (jnrC>=0) ? jnrC : 0;
434 jnrD = (jnrD>=0) ? jnrD : 0;
436 j_coord_offsetA = DIM*jnrA;
437 j_coord_offsetB = DIM*jnrB;
438 j_coord_offsetC = DIM*jnrC;
439 j_coord_offsetD = DIM*jnrD;
441 /* load j atom coordinates */
442 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
443 x+j_coord_offsetC,x+j_coord_offsetD,
446 /* Calculate displacement vector */
447 dx00 = _mm_sub_ps(ix0,jx0);
448 dy00 = _mm_sub_ps(iy0,jy0);
449 dz00 = _mm_sub_ps(iz0,jz0);
450 dx10 = _mm_sub_ps(ix1,jx0);
451 dy10 = _mm_sub_ps(iy1,jy0);
452 dz10 = _mm_sub_ps(iz1,jz0);
453 dx20 = _mm_sub_ps(ix2,jx0);
454 dy20 = _mm_sub_ps(iy2,jy0);
455 dz20 = _mm_sub_ps(iz2,jz0);
456 dx30 = _mm_sub_ps(ix3,jx0);
457 dy30 = _mm_sub_ps(iy3,jy0);
458 dz30 = _mm_sub_ps(iz3,jz0);
460 /* Calculate squared distance and things based on it */
461 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
462 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
463 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
464 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
466 rinv10 = gmx_mm_invsqrt_ps(rsq10);
467 rinv20 = gmx_mm_invsqrt_ps(rsq20);
468 rinv30 = gmx_mm_invsqrt_ps(rsq30);
470 rinvsq00 = gmx_mm_inv_ps(rsq00);
472 /* Load parameters for j particles */
473 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
474 charge+jnrC+0,charge+jnrD+0);
475 vdwjidx0A = 2*vdwtype[jnrA+0];
476 vdwjidx0B = 2*vdwtype[jnrB+0];
477 vdwjidx0C = 2*vdwtype[jnrC+0];
478 vdwjidx0D = 2*vdwtype[jnrD+0];
480 /**************************
481 * CALCULATE INTERACTIONS *
482 **************************/
484 /* Compute parameters for interactions between i and j atoms */
485 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
486 vdwparam+vdwioffset0+vdwjidx0B,
487 vdwparam+vdwioffset0+vdwjidx0C,
488 vdwparam+vdwioffset0+vdwjidx0D,
491 /* LENNARD-JONES DISPERSION/REPULSION */
493 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
494 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
495 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
496 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
497 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
499 /* Update potential sum for this i atom from the interaction with this j atom. */
500 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
501 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
505 fscal = _mm_andnot_ps(dummy_mask,fscal);
507 /* Calculate temporary vectorial force */
508 tx = _mm_mul_ps(fscal,dx00);
509 ty = _mm_mul_ps(fscal,dy00);
510 tz = _mm_mul_ps(fscal,dz00);
512 /* Update vectorial force */
513 fix0 = _mm_add_ps(fix0,tx);
514 fiy0 = _mm_add_ps(fiy0,ty);
515 fiz0 = _mm_add_ps(fiz0,tz);
517 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
518 f+j_coord_offsetC,f+j_coord_offsetD,
521 /**************************
522 * CALCULATE INTERACTIONS *
523 **************************/
525 r10 = _mm_mul_ps(rsq10,rinv10);
526 r10 = _mm_andnot_ps(dummy_mask,r10);
528 /* Compute parameters for interactions between i and j atoms */
529 qq10 = _mm_mul_ps(iq1,jq0);
531 /* Calculate table index by multiplying r with table scale and truncate to integer */
532 rt = _mm_mul_ps(r10,vftabscale);
533 vfitab = _mm_cvttps_epi32(rt);
534 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
535 vfitab = _mm_slli_epi32(vfitab,2);
537 /* CUBIC SPLINE TABLE ELECTROSTATICS */
538 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
539 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
540 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
541 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
542 _MM_TRANSPOSE4_PS(Y,F,G,H);
543 Heps = _mm_mul_ps(vfeps,H);
544 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
545 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
546 velec = _mm_mul_ps(qq10,VV);
547 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
548 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
550 /* Update potential sum for this i atom from the interaction with this j atom. */
551 velec = _mm_andnot_ps(dummy_mask,velec);
552 velecsum = _mm_add_ps(velecsum,velec);
556 fscal = _mm_andnot_ps(dummy_mask,fscal);
558 /* Calculate temporary vectorial force */
559 tx = _mm_mul_ps(fscal,dx10);
560 ty = _mm_mul_ps(fscal,dy10);
561 tz = _mm_mul_ps(fscal,dz10);
563 /* Update vectorial force */
564 fix1 = _mm_add_ps(fix1,tx);
565 fiy1 = _mm_add_ps(fiy1,ty);
566 fiz1 = _mm_add_ps(fiz1,tz);
568 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
569 f+j_coord_offsetC,f+j_coord_offsetD,
572 /**************************
573 * CALCULATE INTERACTIONS *
574 **************************/
576 r20 = _mm_mul_ps(rsq20,rinv20);
577 r20 = _mm_andnot_ps(dummy_mask,r20);
579 /* Compute parameters for interactions between i and j atoms */
580 qq20 = _mm_mul_ps(iq2,jq0);
582 /* Calculate table index by multiplying r with table scale and truncate to integer */
583 rt = _mm_mul_ps(r20,vftabscale);
584 vfitab = _mm_cvttps_epi32(rt);
585 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
586 vfitab = _mm_slli_epi32(vfitab,2);
588 /* CUBIC SPLINE TABLE ELECTROSTATICS */
589 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
590 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
591 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
592 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
593 _MM_TRANSPOSE4_PS(Y,F,G,H);
594 Heps = _mm_mul_ps(vfeps,H);
595 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
596 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
597 velec = _mm_mul_ps(qq20,VV);
598 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
599 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
601 /* Update potential sum for this i atom from the interaction with this j atom. */
602 velec = _mm_andnot_ps(dummy_mask,velec);
603 velecsum = _mm_add_ps(velecsum,velec);
607 fscal = _mm_andnot_ps(dummy_mask,fscal);
609 /* Calculate temporary vectorial force */
610 tx = _mm_mul_ps(fscal,dx20);
611 ty = _mm_mul_ps(fscal,dy20);
612 tz = _mm_mul_ps(fscal,dz20);
614 /* Update vectorial force */
615 fix2 = _mm_add_ps(fix2,tx);
616 fiy2 = _mm_add_ps(fiy2,ty);
617 fiz2 = _mm_add_ps(fiz2,tz);
619 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
620 f+j_coord_offsetC,f+j_coord_offsetD,
623 /**************************
624 * CALCULATE INTERACTIONS *
625 **************************/
627 r30 = _mm_mul_ps(rsq30,rinv30);
628 r30 = _mm_andnot_ps(dummy_mask,r30);
630 /* Compute parameters for interactions between i and j atoms */
631 qq30 = _mm_mul_ps(iq3,jq0);
633 /* Calculate table index by multiplying r with table scale and truncate to integer */
634 rt = _mm_mul_ps(r30,vftabscale);
635 vfitab = _mm_cvttps_epi32(rt);
636 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
637 vfitab = _mm_slli_epi32(vfitab,2);
639 /* CUBIC SPLINE TABLE ELECTROSTATICS */
640 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
641 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
642 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
643 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
644 _MM_TRANSPOSE4_PS(Y,F,G,H);
645 Heps = _mm_mul_ps(vfeps,H);
646 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
647 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
648 velec = _mm_mul_ps(qq30,VV);
649 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
650 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
652 /* Update potential sum for this i atom from the interaction with this j atom. */
653 velec = _mm_andnot_ps(dummy_mask,velec);
654 velecsum = _mm_add_ps(velecsum,velec);
658 fscal = _mm_andnot_ps(dummy_mask,fscal);
660 /* Calculate temporary vectorial force */
661 tx = _mm_mul_ps(fscal,dx30);
662 ty = _mm_mul_ps(fscal,dy30);
663 tz = _mm_mul_ps(fscal,dz30);
665 /* Update vectorial force */
666 fix3 = _mm_add_ps(fix3,tx);
667 fiy3 = _mm_add_ps(fiy3,ty);
668 fiz3 = _mm_add_ps(fiz3,tz);
670 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
671 f+j_coord_offsetC,f+j_coord_offsetD,
674 /* Inner loop uses 164 flops */
677 /* End of innermost loop */
679 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
680 f+i_coord_offset,fshift+i_shift_offset);
683 /* Update potential energies */
684 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
685 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
687 /* Increment number of inner iterations */
688 inneriter += j_index_end - j_index_start;
690 /* Outer loop uses 38 flops */
693 /* Increment number of outer iterations */
696 /* Update outer/inner flops */
698 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*38 + inneriter*164);
701 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
702 * Electrostatics interaction: CubicSplineTable
703 * VdW interaction: LennardJones
704 * Geometry: Water4-Particle
705 * Calculate force/pot: Force
708 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
709 (t_nblist * gmx_restrict nlist,
710 rvec * gmx_restrict xx,
711 rvec * gmx_restrict ff,
712 t_forcerec * gmx_restrict fr,
713 t_mdatoms * gmx_restrict mdatoms,
714 nb_kernel_data_t * gmx_restrict kernel_data,
715 t_nrnb * gmx_restrict nrnb)
717 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
718 * just 0 for non-waters.
719 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
720 * jnr indices corresponding to data put in the four positions in the SIMD register.
722 int i_shift_offset,i_coord_offset,outeriter,inneriter;
723 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
724 int jnrA,jnrB,jnrC,jnrD;
725 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
726 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
727 real shX,shY,shZ,rcutoff_scalar;
728 real *shiftvec,*fshift,*x,*f;
729 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
731 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
733 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
735 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
737 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
738 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
739 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
740 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
741 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
742 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
743 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
744 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
747 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
750 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
751 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
753 __m128i ifour = _mm_set1_epi32(4);
754 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
756 __m128 dummy_mask,cutoff_mask;
757 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
758 __m128 one = _mm_set1_ps(1.0);
759 __m128 two = _mm_set1_ps(2.0);
765 jindex = nlist->jindex;
767 shiftidx = nlist->shift;
769 shiftvec = fr->shift_vec[0];
770 fshift = fr->fshift[0];
771 facel = _mm_set1_ps(fr->epsfac);
772 charge = mdatoms->chargeA;
773 nvdwtype = fr->ntype;
775 vdwtype = mdatoms->typeA;
777 vftab = kernel_data->table_elec->data;
778 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
780 /* Setup water-specific parameters */
781 inr = nlist->iinr[0];
782 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
783 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
784 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
785 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
787 /* Avoid stupid compiler warnings */
788 jnrA = jnrB = jnrC = jnrD = 0;
797 /* Start outer loop over neighborlists */
798 for(iidx=0; iidx<nri; iidx++)
800 /* Load shift vector for this list */
801 i_shift_offset = DIM*shiftidx[iidx];
802 shX = shiftvec[i_shift_offset+XX];
803 shY = shiftvec[i_shift_offset+YY];
804 shZ = shiftvec[i_shift_offset+ZZ];
806 /* Load limits for loop over neighbors */
807 j_index_start = jindex[iidx];
808 j_index_end = jindex[iidx+1];
810 /* Get outer coordinate index */
812 i_coord_offset = DIM*inr;
814 /* Load i particle coords and add shift vector */
815 ix0 = _mm_set1_ps(shX + x[i_coord_offset+DIM*0+XX]);
816 iy0 = _mm_set1_ps(shY + x[i_coord_offset+DIM*0+YY]);
817 iz0 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*0+ZZ]);
818 ix1 = _mm_set1_ps(shX + x[i_coord_offset+DIM*1+XX]);
819 iy1 = _mm_set1_ps(shY + x[i_coord_offset+DIM*1+YY]);
820 iz1 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*1+ZZ]);
821 ix2 = _mm_set1_ps(shX + x[i_coord_offset+DIM*2+XX]);
822 iy2 = _mm_set1_ps(shY + x[i_coord_offset+DIM*2+YY]);
823 iz2 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*2+ZZ]);
824 ix3 = _mm_set1_ps(shX + x[i_coord_offset+DIM*3+XX]);
825 iy3 = _mm_set1_ps(shY + x[i_coord_offset+DIM*3+YY]);
826 iz3 = _mm_set1_ps(shZ + x[i_coord_offset+DIM*3+ZZ]);
828 fix0 = _mm_setzero_ps();
829 fiy0 = _mm_setzero_ps();
830 fiz0 = _mm_setzero_ps();
831 fix1 = _mm_setzero_ps();
832 fiy1 = _mm_setzero_ps();
833 fiz1 = _mm_setzero_ps();
834 fix2 = _mm_setzero_ps();
835 fiy2 = _mm_setzero_ps();
836 fiz2 = _mm_setzero_ps();
837 fix3 = _mm_setzero_ps();
838 fiy3 = _mm_setzero_ps();
839 fiz3 = _mm_setzero_ps();
841 /* Start inner kernel loop */
842 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
845 /* Get j neighbor index, and coordinate index */
851 j_coord_offsetA = DIM*jnrA;
852 j_coord_offsetB = DIM*jnrB;
853 j_coord_offsetC = DIM*jnrC;
854 j_coord_offsetD = DIM*jnrD;
856 /* load j atom coordinates */
857 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
858 x+j_coord_offsetC,x+j_coord_offsetD,
861 /* Calculate displacement vector */
862 dx00 = _mm_sub_ps(ix0,jx0);
863 dy00 = _mm_sub_ps(iy0,jy0);
864 dz00 = _mm_sub_ps(iz0,jz0);
865 dx10 = _mm_sub_ps(ix1,jx0);
866 dy10 = _mm_sub_ps(iy1,jy0);
867 dz10 = _mm_sub_ps(iz1,jz0);
868 dx20 = _mm_sub_ps(ix2,jx0);
869 dy20 = _mm_sub_ps(iy2,jy0);
870 dz20 = _mm_sub_ps(iz2,jz0);
871 dx30 = _mm_sub_ps(ix3,jx0);
872 dy30 = _mm_sub_ps(iy3,jy0);
873 dz30 = _mm_sub_ps(iz3,jz0);
875 /* Calculate squared distance and things based on it */
876 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
877 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
878 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
879 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
881 rinv10 = gmx_mm_invsqrt_ps(rsq10);
882 rinv20 = gmx_mm_invsqrt_ps(rsq20);
883 rinv30 = gmx_mm_invsqrt_ps(rsq30);
885 rinvsq00 = gmx_mm_inv_ps(rsq00);
887 /* Load parameters for j particles */
888 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
889 charge+jnrC+0,charge+jnrD+0);
890 vdwjidx0A = 2*vdwtype[jnrA+0];
891 vdwjidx0B = 2*vdwtype[jnrB+0];
892 vdwjidx0C = 2*vdwtype[jnrC+0];
893 vdwjidx0D = 2*vdwtype[jnrD+0];
895 /**************************
896 * CALCULATE INTERACTIONS *
897 **************************/
899 /* Compute parameters for interactions between i and j atoms */
900 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
901 vdwparam+vdwioffset0+vdwjidx0B,
902 vdwparam+vdwioffset0+vdwjidx0C,
903 vdwparam+vdwioffset0+vdwjidx0D,
906 /* LENNARD-JONES DISPERSION/REPULSION */
908 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
909 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
913 /* Calculate temporary vectorial force */
914 tx = _mm_mul_ps(fscal,dx00);
915 ty = _mm_mul_ps(fscal,dy00);
916 tz = _mm_mul_ps(fscal,dz00);
918 /* Update vectorial force */
919 fix0 = _mm_add_ps(fix0,tx);
920 fiy0 = _mm_add_ps(fiy0,ty);
921 fiz0 = _mm_add_ps(fiz0,tz);
923 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
924 f+j_coord_offsetC,f+j_coord_offsetD,
927 /**************************
928 * CALCULATE INTERACTIONS *
929 **************************/
931 r10 = _mm_mul_ps(rsq10,rinv10);
933 /* Compute parameters for interactions between i and j atoms */
934 qq10 = _mm_mul_ps(iq1,jq0);
936 /* Calculate table index by multiplying r with table scale and truncate to integer */
937 rt = _mm_mul_ps(r10,vftabscale);
938 vfitab = _mm_cvttps_epi32(rt);
939 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
940 vfitab = _mm_slli_epi32(vfitab,2);
942 /* CUBIC SPLINE TABLE ELECTROSTATICS */
943 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
944 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
945 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
946 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
947 _MM_TRANSPOSE4_PS(Y,F,G,H);
948 Heps = _mm_mul_ps(vfeps,H);
949 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
950 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
951 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
955 /* Calculate temporary vectorial force */
956 tx = _mm_mul_ps(fscal,dx10);
957 ty = _mm_mul_ps(fscal,dy10);
958 tz = _mm_mul_ps(fscal,dz10);
960 /* Update vectorial force */
961 fix1 = _mm_add_ps(fix1,tx);
962 fiy1 = _mm_add_ps(fiy1,ty);
963 fiz1 = _mm_add_ps(fiz1,tz);
965 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
966 f+j_coord_offsetC,f+j_coord_offsetD,
969 /**************************
970 * CALCULATE INTERACTIONS *
971 **************************/
973 r20 = _mm_mul_ps(rsq20,rinv20);
975 /* Compute parameters for interactions between i and j atoms */
976 qq20 = _mm_mul_ps(iq2,jq0);
978 /* Calculate table index by multiplying r with table scale and truncate to integer */
979 rt = _mm_mul_ps(r20,vftabscale);
980 vfitab = _mm_cvttps_epi32(rt);
981 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
982 vfitab = _mm_slli_epi32(vfitab,2);
984 /* CUBIC SPLINE TABLE ELECTROSTATICS */
985 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
986 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
987 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
988 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
989 _MM_TRANSPOSE4_PS(Y,F,G,H);
990 Heps = _mm_mul_ps(vfeps,H);
991 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
992 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
993 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
997 /* Calculate temporary vectorial force */
998 tx = _mm_mul_ps(fscal,dx20);
999 ty = _mm_mul_ps(fscal,dy20);
1000 tz = _mm_mul_ps(fscal,dz20);
1002 /* Update vectorial force */
1003 fix2 = _mm_add_ps(fix2,tx);
1004 fiy2 = _mm_add_ps(fiy2,ty);
1005 fiz2 = _mm_add_ps(fiz2,tz);
1007 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1008 f+j_coord_offsetC,f+j_coord_offsetD,
1011 /**************************
1012 * CALCULATE INTERACTIONS *
1013 **************************/
1015 r30 = _mm_mul_ps(rsq30,rinv30);
1017 /* Compute parameters for interactions between i and j atoms */
1018 qq30 = _mm_mul_ps(iq3,jq0);
1020 /* Calculate table index by multiplying r with table scale and truncate to integer */
1021 rt = _mm_mul_ps(r30,vftabscale);
1022 vfitab = _mm_cvttps_epi32(rt);
1023 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1024 vfitab = _mm_slli_epi32(vfitab,2);
1026 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1027 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1028 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1029 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1030 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1031 _MM_TRANSPOSE4_PS(Y,F,G,H);
1032 Heps = _mm_mul_ps(vfeps,H);
1033 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1034 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1035 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1039 /* Calculate temporary vectorial force */
1040 tx = _mm_mul_ps(fscal,dx30);
1041 ty = _mm_mul_ps(fscal,dy30);
1042 tz = _mm_mul_ps(fscal,dz30);
1044 /* Update vectorial force */
1045 fix3 = _mm_add_ps(fix3,tx);
1046 fiy3 = _mm_add_ps(fiy3,ty);
1047 fiz3 = _mm_add_ps(fiz3,tz);
1049 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1050 f+j_coord_offsetC,f+j_coord_offsetD,
1053 /* Inner loop uses 144 flops */
1056 if(jidx<j_index_end)
1059 /* Get j neighbor index, and coordinate index */
1061 jnrB = jjnr[jidx+1];
1062 jnrC = jjnr[jidx+2];
1063 jnrD = jjnr[jidx+3];
1065 /* Sign of each element will be negative for non-real atoms.
1066 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1067 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1069 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1070 jnrA = (jnrA>=0) ? jnrA : 0;
1071 jnrB = (jnrB>=0) ? jnrB : 0;
1072 jnrC = (jnrC>=0) ? jnrC : 0;
1073 jnrD = (jnrD>=0) ? jnrD : 0;
1075 j_coord_offsetA = DIM*jnrA;
1076 j_coord_offsetB = DIM*jnrB;
1077 j_coord_offsetC = DIM*jnrC;
1078 j_coord_offsetD = DIM*jnrD;
1080 /* load j atom coordinates */
1081 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1082 x+j_coord_offsetC,x+j_coord_offsetD,
1085 /* Calculate displacement vector */
1086 dx00 = _mm_sub_ps(ix0,jx0);
1087 dy00 = _mm_sub_ps(iy0,jy0);
1088 dz00 = _mm_sub_ps(iz0,jz0);
1089 dx10 = _mm_sub_ps(ix1,jx0);
1090 dy10 = _mm_sub_ps(iy1,jy0);
1091 dz10 = _mm_sub_ps(iz1,jz0);
1092 dx20 = _mm_sub_ps(ix2,jx0);
1093 dy20 = _mm_sub_ps(iy2,jy0);
1094 dz20 = _mm_sub_ps(iz2,jz0);
1095 dx30 = _mm_sub_ps(ix3,jx0);
1096 dy30 = _mm_sub_ps(iy3,jy0);
1097 dz30 = _mm_sub_ps(iz3,jz0);
1099 /* Calculate squared distance and things based on it */
1100 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1101 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1102 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1103 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1105 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1106 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1107 rinv30 = gmx_mm_invsqrt_ps(rsq30);
1109 rinvsq00 = gmx_mm_inv_ps(rsq00);
1111 /* Load parameters for j particles */
1112 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1113 charge+jnrC+0,charge+jnrD+0);
1114 vdwjidx0A = 2*vdwtype[jnrA+0];
1115 vdwjidx0B = 2*vdwtype[jnrB+0];
1116 vdwjidx0C = 2*vdwtype[jnrC+0];
1117 vdwjidx0D = 2*vdwtype[jnrD+0];
1119 /**************************
1120 * CALCULATE INTERACTIONS *
1121 **************************/
1123 /* Compute parameters for interactions between i and j atoms */
1124 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1125 vdwparam+vdwioffset0+vdwjidx0B,
1126 vdwparam+vdwioffset0+vdwjidx0C,
1127 vdwparam+vdwioffset0+vdwjidx0D,
1130 /* LENNARD-JONES DISPERSION/REPULSION */
1132 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1133 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1137 fscal = _mm_andnot_ps(dummy_mask,fscal);
1139 /* Calculate temporary vectorial force */
1140 tx = _mm_mul_ps(fscal,dx00);
1141 ty = _mm_mul_ps(fscal,dy00);
1142 tz = _mm_mul_ps(fscal,dz00);
1144 /* Update vectorial force */
1145 fix0 = _mm_add_ps(fix0,tx);
1146 fiy0 = _mm_add_ps(fiy0,ty);
1147 fiz0 = _mm_add_ps(fiz0,tz);
1149 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1150 f+j_coord_offsetC,f+j_coord_offsetD,
1153 /**************************
1154 * CALCULATE INTERACTIONS *
1155 **************************/
1157 r10 = _mm_mul_ps(rsq10,rinv10);
1158 r10 = _mm_andnot_ps(dummy_mask,r10);
1160 /* Compute parameters for interactions between i and j atoms */
1161 qq10 = _mm_mul_ps(iq1,jq0);
1163 /* Calculate table index by multiplying r with table scale and truncate to integer */
1164 rt = _mm_mul_ps(r10,vftabscale);
1165 vfitab = _mm_cvttps_epi32(rt);
1166 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1167 vfitab = _mm_slli_epi32(vfitab,2);
1169 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1170 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1171 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1172 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1173 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1174 _MM_TRANSPOSE4_PS(Y,F,G,H);
1175 Heps = _mm_mul_ps(vfeps,H);
1176 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1177 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1178 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1182 fscal = _mm_andnot_ps(dummy_mask,fscal);
1184 /* Calculate temporary vectorial force */
1185 tx = _mm_mul_ps(fscal,dx10);
1186 ty = _mm_mul_ps(fscal,dy10);
1187 tz = _mm_mul_ps(fscal,dz10);
1189 /* Update vectorial force */
1190 fix1 = _mm_add_ps(fix1,tx);
1191 fiy1 = _mm_add_ps(fiy1,ty);
1192 fiz1 = _mm_add_ps(fiz1,tz);
1194 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1195 f+j_coord_offsetC,f+j_coord_offsetD,
1198 /**************************
1199 * CALCULATE INTERACTIONS *
1200 **************************/
1202 r20 = _mm_mul_ps(rsq20,rinv20);
1203 r20 = _mm_andnot_ps(dummy_mask,r20);
1205 /* Compute parameters for interactions between i and j atoms */
1206 qq20 = _mm_mul_ps(iq2,jq0);
1208 /* Calculate table index by multiplying r with table scale and truncate to integer */
1209 rt = _mm_mul_ps(r20,vftabscale);
1210 vfitab = _mm_cvttps_epi32(rt);
1211 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1212 vfitab = _mm_slli_epi32(vfitab,2);
1214 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1215 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1216 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1217 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1218 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1219 _MM_TRANSPOSE4_PS(Y,F,G,H);
1220 Heps = _mm_mul_ps(vfeps,H);
1221 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1222 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1223 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1227 fscal = _mm_andnot_ps(dummy_mask,fscal);
1229 /* Calculate temporary vectorial force */
1230 tx = _mm_mul_ps(fscal,dx20);
1231 ty = _mm_mul_ps(fscal,dy20);
1232 tz = _mm_mul_ps(fscal,dz20);
1234 /* Update vectorial force */
1235 fix2 = _mm_add_ps(fix2,tx);
1236 fiy2 = _mm_add_ps(fiy2,ty);
1237 fiz2 = _mm_add_ps(fiz2,tz);
1239 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1240 f+j_coord_offsetC,f+j_coord_offsetD,
1243 /**************************
1244 * CALCULATE INTERACTIONS *
1245 **************************/
1247 r30 = _mm_mul_ps(rsq30,rinv30);
1248 r30 = _mm_andnot_ps(dummy_mask,r30);
1250 /* Compute parameters for interactions between i and j atoms */
1251 qq30 = _mm_mul_ps(iq3,jq0);
1253 /* Calculate table index by multiplying r with table scale and truncate to integer */
1254 rt = _mm_mul_ps(r30,vftabscale);
1255 vfitab = _mm_cvttps_epi32(rt);
1256 vfeps = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1257 vfitab = _mm_slli_epi32(vfitab,2);
1259 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1260 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1261 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1262 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1263 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1264 _MM_TRANSPOSE4_PS(Y,F,G,H);
1265 Heps = _mm_mul_ps(vfeps,H);
1266 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1267 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1268 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1272 fscal = _mm_andnot_ps(dummy_mask,fscal);
1274 /* Calculate temporary vectorial force */
1275 tx = _mm_mul_ps(fscal,dx30);
1276 ty = _mm_mul_ps(fscal,dy30);
1277 tz = _mm_mul_ps(fscal,dz30);
1279 /* Update vectorial force */
1280 fix3 = _mm_add_ps(fix3,tx);
1281 fiy3 = _mm_add_ps(fiy3,ty);
1282 fiz3 = _mm_add_ps(fiz3,tz);
1284 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(f+j_coord_offsetA,f+j_coord_offsetB,
1285 f+j_coord_offsetC,f+j_coord_offsetD,
1288 /* Inner loop uses 147 flops */
1291 /* End of innermost loop */
1293 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1294 f+i_coord_offset,fshift+i_shift_offset);
1296 /* Increment number of inner iterations */
1297 inneriter += j_index_end - j_index_start;
1299 /* Outer loop uses 36 flops */
1302 /* Increment number of outer iterations */
1305 /* Update outer/inner flops */
1307 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*36 + inneriter*147);