4b688b915c4ac9040c7bf8ae9159bc3d0f06827a
[alexxy/gromacs.git] / src / gmxlib / nonbonded / nb_kernel_sse2_single / nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_sse2_single.c
1 /*
2  * Note: this file was generated by the Gromacs sse2_single kernel generator.
3  *
4  *                This source code is part of
5  *
6  *                 G   R   O   M   A   C   S
7  *
8  * Copyright (c) 2001-2012, The GROMACS Development Team
9  *
10  * Gromacs is a library for molecular simulation and trajectory analysis,
11  * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12  * a full list of developers and information, check out http://www.gromacs.org
13  *
14  * This program is free software; you can redistribute it and/or modify it under
15  * the terms of the GNU Lesser General Public License as published by the Free
16  * Software Foundation; either version 2 of the License, or (at your option) any
17  * later version.
18  *
19  * To help fund GROMACS development, we humbly ask that you cite
20  * the papers people have written on it - you can find them on the website.
21  */
22 #ifdef HAVE_CONFIG_H
23 #include <config.h>
24 #endif
25
26 #include <math.h>
27
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
30 #include "vec.h"
31 #include "nrnb.h"
32
33 #include "gmx_math_x86_sse2_single.h"
34 #include "kernelutil_x86_sse2_single.h"
35
36 /*
37  * Gromacs nonbonded kernel:   nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
38  * Electrostatics interaction: CubicSplineTable
39  * VdW interaction:            LennardJones
40  * Geometry:                   Water4-Particle
41  * Calculate force/pot:        PotentialAndForce
42  */
43 void
44 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse2_single
45                     (t_nblist * gmx_restrict                nlist,
46                      rvec * gmx_restrict                    xx,
47                      rvec * gmx_restrict                    ff,
48                      t_forcerec * gmx_restrict              fr,
49                      t_mdatoms * gmx_restrict               mdatoms,
50                      nb_kernel_data_t * gmx_restrict        kernel_data,
51                      t_nrnb * gmx_restrict                  nrnb)
52 {
53     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
54      * just 0 for non-waters.
55      * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56      * jnr indices corresponding to data put in the four positions in the SIMD register.
57      */
58     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
59     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60     int              jnrA,jnrB,jnrC,jnrD;
61     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
64     real             rcutoff_scalar;
65     real             *shiftvec,*fshift,*x,*f;
66     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD;
67     real             scratch[4*DIM];
68     __m128           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
69     int              vdwioffset0;
70     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
71     int              vdwioffset1;
72     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
73     int              vdwioffset2;
74     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
75     int              vdwioffset3;
76     __m128           ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
77     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
78     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
79     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
80     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
81     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
82     __m128           dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
83     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
84     real             *charge;
85     int              nvdwtype;
86     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
87     int              *vdwtype;
88     real             *vdwparam;
89     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
90     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
91     __m128i          vfitab;
92     __m128i          ifour       = _mm_set1_epi32(4);
93     __m128           rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
94     real             *vftab;
95     __m128           dummy_mask,cutoff_mask;
96     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
97     __m128           one     = _mm_set1_ps(1.0);
98     __m128           two     = _mm_set1_ps(2.0);
99     x                = xx[0];
100     f                = ff[0];
101
102     nri              = nlist->nri;
103     iinr             = nlist->iinr;
104     jindex           = nlist->jindex;
105     jjnr             = nlist->jjnr;
106     shiftidx         = nlist->shift;
107     gid              = nlist->gid;
108     shiftvec         = fr->shift_vec[0];
109     fshift           = fr->fshift[0];
110     facel            = _mm_set1_ps(fr->epsfac);
111     charge           = mdatoms->chargeA;
112     nvdwtype         = fr->ntype;
113     vdwparam         = fr->nbfp;
114     vdwtype          = mdatoms->typeA;
115
116     vftab            = kernel_data->table_elec->data;
117     vftabscale       = _mm_set1_ps(kernel_data->table_elec->scale);
118
119     /* Setup water-specific parameters */
120     inr              = nlist->iinr[0];
121     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
122     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
123     iq3              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
124     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
125
126     /* Avoid stupid compiler warnings */
127     jnrA = jnrB = jnrC = jnrD = 0;
128     j_coord_offsetA = 0;
129     j_coord_offsetB = 0;
130     j_coord_offsetC = 0;
131     j_coord_offsetD = 0;
132
133     outeriter        = 0;
134     inneriter        = 0;
135
136     for(iidx=0;iidx<4*DIM;iidx++)
137     {
138         scratch[iidx] = 0.0;
139     }  
140
141     /* Start outer loop over neighborlists */
142     for(iidx=0; iidx<nri; iidx++)
143     {
144         /* Load shift vector for this list */
145         i_shift_offset   = DIM*shiftidx[iidx];
146
147         /* Load limits for loop over neighbors */
148         j_index_start    = jindex[iidx];
149         j_index_end      = jindex[iidx+1];
150
151         /* Get outer coordinate index */
152         inr              = iinr[iidx];
153         i_coord_offset   = DIM*inr;
154
155         /* Load i particle coords and add shift vector */
156         gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
157                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
158         
159         fix0             = _mm_setzero_ps();
160         fiy0             = _mm_setzero_ps();
161         fiz0             = _mm_setzero_ps();
162         fix1             = _mm_setzero_ps();
163         fiy1             = _mm_setzero_ps();
164         fiz1             = _mm_setzero_ps();
165         fix2             = _mm_setzero_ps();
166         fiy2             = _mm_setzero_ps();
167         fiz2             = _mm_setzero_ps();
168         fix3             = _mm_setzero_ps();
169         fiy3             = _mm_setzero_ps();
170         fiz3             = _mm_setzero_ps();
171
172         /* Reset potential sums */
173         velecsum         = _mm_setzero_ps();
174         vvdwsum          = _mm_setzero_ps();
175
176         /* Start inner kernel loop */
177         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
178         {
179
180             /* Get j neighbor index, and coordinate index */
181             jnrA             = jjnr[jidx];
182             jnrB             = jjnr[jidx+1];
183             jnrC             = jjnr[jidx+2];
184             jnrD             = jjnr[jidx+3];
185             j_coord_offsetA  = DIM*jnrA;
186             j_coord_offsetB  = DIM*jnrB;
187             j_coord_offsetC  = DIM*jnrC;
188             j_coord_offsetD  = DIM*jnrD;
189
190             /* load j atom coordinates */
191             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
192                                               x+j_coord_offsetC,x+j_coord_offsetD,
193                                               &jx0,&jy0,&jz0);
194
195             /* Calculate displacement vector */
196             dx00             = _mm_sub_ps(ix0,jx0);
197             dy00             = _mm_sub_ps(iy0,jy0);
198             dz00             = _mm_sub_ps(iz0,jz0);
199             dx10             = _mm_sub_ps(ix1,jx0);
200             dy10             = _mm_sub_ps(iy1,jy0);
201             dz10             = _mm_sub_ps(iz1,jz0);
202             dx20             = _mm_sub_ps(ix2,jx0);
203             dy20             = _mm_sub_ps(iy2,jy0);
204             dz20             = _mm_sub_ps(iz2,jz0);
205             dx30             = _mm_sub_ps(ix3,jx0);
206             dy30             = _mm_sub_ps(iy3,jy0);
207             dz30             = _mm_sub_ps(iz3,jz0);
208
209             /* Calculate squared distance and things based on it */
210             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
211             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
212             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
213             rsq30            = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
214
215             rinv10           = gmx_mm_invsqrt_ps(rsq10);
216             rinv20           = gmx_mm_invsqrt_ps(rsq20);
217             rinv30           = gmx_mm_invsqrt_ps(rsq30);
218
219             rinvsq00         = gmx_mm_inv_ps(rsq00);
220
221             /* Load parameters for j particles */
222             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
223                                                               charge+jnrC+0,charge+jnrD+0);
224             vdwjidx0A        = 2*vdwtype[jnrA+0];
225             vdwjidx0B        = 2*vdwtype[jnrB+0];
226             vdwjidx0C        = 2*vdwtype[jnrC+0];
227             vdwjidx0D        = 2*vdwtype[jnrD+0];
228
229             fjx0             = _mm_setzero_ps();
230             fjy0             = _mm_setzero_ps();
231             fjz0             = _mm_setzero_ps();
232
233             /**************************
234              * CALCULATE INTERACTIONS *
235              **************************/
236
237             /* Compute parameters for interactions between i and j atoms */
238             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
239                                          vdwparam+vdwioffset0+vdwjidx0B,
240                                          vdwparam+vdwioffset0+vdwjidx0C,
241                                          vdwparam+vdwioffset0+vdwjidx0D,
242                                          &c6_00,&c12_00);
243
244             /* LENNARD-JONES DISPERSION/REPULSION */
245
246             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
247             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
248             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
249             vvdw             = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
250             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
251
252             /* Update potential sum for this i atom from the interaction with this j atom. */
253             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
254
255             fscal            = fvdw;
256
257             /* Calculate temporary vectorial force */
258             tx               = _mm_mul_ps(fscal,dx00);
259             ty               = _mm_mul_ps(fscal,dy00);
260             tz               = _mm_mul_ps(fscal,dz00);
261
262             /* Update vectorial force */
263             fix0             = _mm_add_ps(fix0,tx);
264             fiy0             = _mm_add_ps(fiy0,ty);
265             fiz0             = _mm_add_ps(fiz0,tz);
266
267             fjx0             = _mm_add_ps(fjx0,tx);
268             fjy0             = _mm_add_ps(fjy0,ty);
269             fjz0             = _mm_add_ps(fjz0,tz);
270             
271             /**************************
272              * CALCULATE INTERACTIONS *
273              **************************/
274
275             r10              = _mm_mul_ps(rsq10,rinv10);
276
277             /* Compute parameters for interactions between i and j atoms */
278             qq10             = _mm_mul_ps(iq1,jq0);
279
280             /* Calculate table index by multiplying r with table scale and truncate to integer */
281             rt               = _mm_mul_ps(r10,vftabscale);
282             vfitab           = _mm_cvttps_epi32(rt);
283             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
284             vfitab           = _mm_slli_epi32(vfitab,2);
285
286             /* CUBIC SPLINE TABLE ELECTROSTATICS */
287             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
288             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
289             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
290             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
291             _MM_TRANSPOSE4_PS(Y,F,G,H);
292             Heps             = _mm_mul_ps(vfeps,H);
293             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
294             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
295             velec            = _mm_mul_ps(qq10,VV);
296             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
297             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
298
299             /* Update potential sum for this i atom from the interaction with this j atom. */
300             velecsum         = _mm_add_ps(velecsum,velec);
301
302             fscal            = felec;
303
304             /* Calculate temporary vectorial force */
305             tx               = _mm_mul_ps(fscal,dx10);
306             ty               = _mm_mul_ps(fscal,dy10);
307             tz               = _mm_mul_ps(fscal,dz10);
308
309             /* Update vectorial force */
310             fix1             = _mm_add_ps(fix1,tx);
311             fiy1             = _mm_add_ps(fiy1,ty);
312             fiz1             = _mm_add_ps(fiz1,tz);
313
314             fjx0             = _mm_add_ps(fjx0,tx);
315             fjy0             = _mm_add_ps(fjy0,ty);
316             fjz0             = _mm_add_ps(fjz0,tz);
317             
318             /**************************
319              * CALCULATE INTERACTIONS *
320              **************************/
321
322             r20              = _mm_mul_ps(rsq20,rinv20);
323
324             /* Compute parameters for interactions between i and j atoms */
325             qq20             = _mm_mul_ps(iq2,jq0);
326
327             /* Calculate table index by multiplying r with table scale and truncate to integer */
328             rt               = _mm_mul_ps(r20,vftabscale);
329             vfitab           = _mm_cvttps_epi32(rt);
330             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
331             vfitab           = _mm_slli_epi32(vfitab,2);
332
333             /* CUBIC SPLINE TABLE ELECTROSTATICS */
334             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
335             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
336             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
337             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
338             _MM_TRANSPOSE4_PS(Y,F,G,H);
339             Heps             = _mm_mul_ps(vfeps,H);
340             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
341             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
342             velec            = _mm_mul_ps(qq20,VV);
343             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
344             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
345
346             /* Update potential sum for this i atom from the interaction with this j atom. */
347             velecsum         = _mm_add_ps(velecsum,velec);
348
349             fscal            = felec;
350
351             /* Calculate temporary vectorial force */
352             tx               = _mm_mul_ps(fscal,dx20);
353             ty               = _mm_mul_ps(fscal,dy20);
354             tz               = _mm_mul_ps(fscal,dz20);
355
356             /* Update vectorial force */
357             fix2             = _mm_add_ps(fix2,tx);
358             fiy2             = _mm_add_ps(fiy2,ty);
359             fiz2             = _mm_add_ps(fiz2,tz);
360
361             fjx0             = _mm_add_ps(fjx0,tx);
362             fjy0             = _mm_add_ps(fjy0,ty);
363             fjz0             = _mm_add_ps(fjz0,tz);
364             
365             /**************************
366              * CALCULATE INTERACTIONS *
367              **************************/
368
369             r30              = _mm_mul_ps(rsq30,rinv30);
370
371             /* Compute parameters for interactions between i and j atoms */
372             qq30             = _mm_mul_ps(iq3,jq0);
373
374             /* Calculate table index by multiplying r with table scale and truncate to integer */
375             rt               = _mm_mul_ps(r30,vftabscale);
376             vfitab           = _mm_cvttps_epi32(rt);
377             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
378             vfitab           = _mm_slli_epi32(vfitab,2);
379
380             /* CUBIC SPLINE TABLE ELECTROSTATICS */
381             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
382             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
383             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
384             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
385             _MM_TRANSPOSE4_PS(Y,F,G,H);
386             Heps             = _mm_mul_ps(vfeps,H);
387             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
388             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
389             velec            = _mm_mul_ps(qq30,VV);
390             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
391             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
392
393             /* Update potential sum for this i atom from the interaction with this j atom. */
394             velecsum         = _mm_add_ps(velecsum,velec);
395
396             fscal            = felec;
397
398             /* Calculate temporary vectorial force */
399             tx               = _mm_mul_ps(fscal,dx30);
400             ty               = _mm_mul_ps(fscal,dy30);
401             tz               = _mm_mul_ps(fscal,dz30);
402
403             /* Update vectorial force */
404             fix3             = _mm_add_ps(fix3,tx);
405             fiy3             = _mm_add_ps(fiy3,ty);
406             fiz3             = _mm_add_ps(fiz3,tz);
407
408             fjx0             = _mm_add_ps(fjx0,tx);
409             fjy0             = _mm_add_ps(fjy0,ty);
410             fjz0             = _mm_add_ps(fjz0,tz);
411             
412             fjptrA             = f+j_coord_offsetA;
413             fjptrB             = f+j_coord_offsetB;
414             fjptrC             = f+j_coord_offsetC;
415             fjptrD             = f+j_coord_offsetD;
416
417             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
418
419             /* Inner loop uses 161 flops */
420         }
421
422         if(jidx<j_index_end)
423         {
424
425             /* Get j neighbor index, and coordinate index */
426             jnrlistA         = jjnr[jidx];
427             jnrlistB         = jjnr[jidx+1];
428             jnrlistC         = jjnr[jidx+2];
429             jnrlistD         = jjnr[jidx+3];
430             /* Sign of each element will be negative for non-real atoms.
431              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
432              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
433              */
434             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
435             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
436             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
437             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
438             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
439             j_coord_offsetA  = DIM*jnrA;
440             j_coord_offsetB  = DIM*jnrB;
441             j_coord_offsetC  = DIM*jnrC;
442             j_coord_offsetD  = DIM*jnrD;
443
444             /* load j atom coordinates */
445             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
446                                               x+j_coord_offsetC,x+j_coord_offsetD,
447                                               &jx0,&jy0,&jz0);
448
449             /* Calculate displacement vector */
450             dx00             = _mm_sub_ps(ix0,jx0);
451             dy00             = _mm_sub_ps(iy0,jy0);
452             dz00             = _mm_sub_ps(iz0,jz0);
453             dx10             = _mm_sub_ps(ix1,jx0);
454             dy10             = _mm_sub_ps(iy1,jy0);
455             dz10             = _mm_sub_ps(iz1,jz0);
456             dx20             = _mm_sub_ps(ix2,jx0);
457             dy20             = _mm_sub_ps(iy2,jy0);
458             dz20             = _mm_sub_ps(iz2,jz0);
459             dx30             = _mm_sub_ps(ix3,jx0);
460             dy30             = _mm_sub_ps(iy3,jy0);
461             dz30             = _mm_sub_ps(iz3,jz0);
462
463             /* Calculate squared distance and things based on it */
464             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
465             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
466             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
467             rsq30            = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
468
469             rinv10           = gmx_mm_invsqrt_ps(rsq10);
470             rinv20           = gmx_mm_invsqrt_ps(rsq20);
471             rinv30           = gmx_mm_invsqrt_ps(rsq30);
472
473             rinvsq00         = gmx_mm_inv_ps(rsq00);
474
475             /* Load parameters for j particles */
476             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
477                                                               charge+jnrC+0,charge+jnrD+0);
478             vdwjidx0A        = 2*vdwtype[jnrA+0];
479             vdwjidx0B        = 2*vdwtype[jnrB+0];
480             vdwjidx0C        = 2*vdwtype[jnrC+0];
481             vdwjidx0D        = 2*vdwtype[jnrD+0];
482
483             fjx0             = _mm_setzero_ps();
484             fjy0             = _mm_setzero_ps();
485             fjz0             = _mm_setzero_ps();
486
487             /**************************
488              * CALCULATE INTERACTIONS *
489              **************************/
490
491             /* Compute parameters for interactions between i and j atoms */
492             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
493                                          vdwparam+vdwioffset0+vdwjidx0B,
494                                          vdwparam+vdwioffset0+vdwjidx0C,
495                                          vdwparam+vdwioffset0+vdwjidx0D,
496                                          &c6_00,&c12_00);
497
498             /* LENNARD-JONES DISPERSION/REPULSION */
499
500             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
501             vvdw6            = _mm_mul_ps(c6_00,rinvsix);
502             vvdw12           = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
503             vvdw             = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
504             fvdw             = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
505
506             /* Update potential sum for this i atom from the interaction with this j atom. */
507             vvdw             = _mm_andnot_ps(dummy_mask,vvdw);
508             vvdwsum          = _mm_add_ps(vvdwsum,vvdw);
509
510             fscal            = fvdw;
511
512             fscal            = _mm_andnot_ps(dummy_mask,fscal);
513
514             /* Calculate temporary vectorial force */
515             tx               = _mm_mul_ps(fscal,dx00);
516             ty               = _mm_mul_ps(fscal,dy00);
517             tz               = _mm_mul_ps(fscal,dz00);
518
519             /* Update vectorial force */
520             fix0             = _mm_add_ps(fix0,tx);
521             fiy0             = _mm_add_ps(fiy0,ty);
522             fiz0             = _mm_add_ps(fiz0,tz);
523
524             fjx0             = _mm_add_ps(fjx0,tx);
525             fjy0             = _mm_add_ps(fjy0,ty);
526             fjz0             = _mm_add_ps(fjz0,tz);
527             
528             /**************************
529              * CALCULATE INTERACTIONS *
530              **************************/
531
532             r10              = _mm_mul_ps(rsq10,rinv10);
533             r10              = _mm_andnot_ps(dummy_mask,r10);
534
535             /* Compute parameters for interactions between i and j atoms */
536             qq10             = _mm_mul_ps(iq1,jq0);
537
538             /* Calculate table index by multiplying r with table scale and truncate to integer */
539             rt               = _mm_mul_ps(r10,vftabscale);
540             vfitab           = _mm_cvttps_epi32(rt);
541             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
542             vfitab           = _mm_slli_epi32(vfitab,2);
543
544             /* CUBIC SPLINE TABLE ELECTROSTATICS */
545             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
546             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
547             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
548             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
549             _MM_TRANSPOSE4_PS(Y,F,G,H);
550             Heps             = _mm_mul_ps(vfeps,H);
551             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
552             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
553             velec            = _mm_mul_ps(qq10,VV);
554             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
555             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
556
557             /* Update potential sum for this i atom from the interaction with this j atom. */
558             velec            = _mm_andnot_ps(dummy_mask,velec);
559             velecsum         = _mm_add_ps(velecsum,velec);
560
561             fscal            = felec;
562
563             fscal            = _mm_andnot_ps(dummy_mask,fscal);
564
565             /* Calculate temporary vectorial force */
566             tx               = _mm_mul_ps(fscal,dx10);
567             ty               = _mm_mul_ps(fscal,dy10);
568             tz               = _mm_mul_ps(fscal,dz10);
569
570             /* Update vectorial force */
571             fix1             = _mm_add_ps(fix1,tx);
572             fiy1             = _mm_add_ps(fiy1,ty);
573             fiz1             = _mm_add_ps(fiz1,tz);
574
575             fjx0             = _mm_add_ps(fjx0,tx);
576             fjy0             = _mm_add_ps(fjy0,ty);
577             fjz0             = _mm_add_ps(fjz0,tz);
578             
579             /**************************
580              * CALCULATE INTERACTIONS *
581              **************************/
582
583             r20              = _mm_mul_ps(rsq20,rinv20);
584             r20              = _mm_andnot_ps(dummy_mask,r20);
585
586             /* Compute parameters for interactions between i and j atoms */
587             qq20             = _mm_mul_ps(iq2,jq0);
588
589             /* Calculate table index by multiplying r with table scale and truncate to integer */
590             rt               = _mm_mul_ps(r20,vftabscale);
591             vfitab           = _mm_cvttps_epi32(rt);
592             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
593             vfitab           = _mm_slli_epi32(vfitab,2);
594
595             /* CUBIC SPLINE TABLE ELECTROSTATICS */
596             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
597             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
598             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
599             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
600             _MM_TRANSPOSE4_PS(Y,F,G,H);
601             Heps             = _mm_mul_ps(vfeps,H);
602             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
603             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
604             velec            = _mm_mul_ps(qq20,VV);
605             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
606             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
607
608             /* Update potential sum for this i atom from the interaction with this j atom. */
609             velec            = _mm_andnot_ps(dummy_mask,velec);
610             velecsum         = _mm_add_ps(velecsum,velec);
611
612             fscal            = felec;
613
614             fscal            = _mm_andnot_ps(dummy_mask,fscal);
615
616             /* Calculate temporary vectorial force */
617             tx               = _mm_mul_ps(fscal,dx20);
618             ty               = _mm_mul_ps(fscal,dy20);
619             tz               = _mm_mul_ps(fscal,dz20);
620
621             /* Update vectorial force */
622             fix2             = _mm_add_ps(fix2,tx);
623             fiy2             = _mm_add_ps(fiy2,ty);
624             fiz2             = _mm_add_ps(fiz2,tz);
625
626             fjx0             = _mm_add_ps(fjx0,tx);
627             fjy0             = _mm_add_ps(fjy0,ty);
628             fjz0             = _mm_add_ps(fjz0,tz);
629             
630             /**************************
631              * CALCULATE INTERACTIONS *
632              **************************/
633
634             r30              = _mm_mul_ps(rsq30,rinv30);
635             r30              = _mm_andnot_ps(dummy_mask,r30);
636
637             /* Compute parameters for interactions between i and j atoms */
638             qq30             = _mm_mul_ps(iq3,jq0);
639
640             /* Calculate table index by multiplying r with table scale and truncate to integer */
641             rt               = _mm_mul_ps(r30,vftabscale);
642             vfitab           = _mm_cvttps_epi32(rt);
643             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
644             vfitab           = _mm_slli_epi32(vfitab,2);
645
646             /* CUBIC SPLINE TABLE ELECTROSTATICS */
647             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
648             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
649             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
650             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
651             _MM_TRANSPOSE4_PS(Y,F,G,H);
652             Heps             = _mm_mul_ps(vfeps,H);
653             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
654             VV               = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
655             velec            = _mm_mul_ps(qq30,VV);
656             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
657             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
658
659             /* Update potential sum for this i atom from the interaction with this j atom. */
660             velec            = _mm_andnot_ps(dummy_mask,velec);
661             velecsum         = _mm_add_ps(velecsum,velec);
662
663             fscal            = felec;
664
665             fscal            = _mm_andnot_ps(dummy_mask,fscal);
666
667             /* Calculate temporary vectorial force */
668             tx               = _mm_mul_ps(fscal,dx30);
669             ty               = _mm_mul_ps(fscal,dy30);
670             tz               = _mm_mul_ps(fscal,dz30);
671
672             /* Update vectorial force */
673             fix3             = _mm_add_ps(fix3,tx);
674             fiy3             = _mm_add_ps(fiy3,ty);
675             fiz3             = _mm_add_ps(fiz3,tz);
676
677             fjx0             = _mm_add_ps(fjx0,tx);
678             fjy0             = _mm_add_ps(fjy0,ty);
679             fjz0             = _mm_add_ps(fjz0,tz);
680             
681             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
682             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
683             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
684             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
685
686             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
687
688             /* Inner loop uses 164 flops */
689         }
690
691         /* End of innermost loop */
692
693         gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
694                                               f+i_coord_offset,fshift+i_shift_offset);
695
696         ggid                        = gid[iidx];
697         /* Update potential energies */
698         gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
699         gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
700
701         /* Increment number of inner iterations */
702         inneriter                  += j_index_end - j_index_start;
703
704         /* Outer loop uses 26 flops */
705     }
706
707     /* Increment number of outer iterations */
708     outeriter        += nri;
709
710     /* Update outer/inner flops */
711
712     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*164);
713 }
714 /*
715  * Gromacs nonbonded kernel:   nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
716  * Electrostatics interaction: CubicSplineTable
717  * VdW interaction:            LennardJones
718  * Geometry:                   Water4-Particle
719  * Calculate force/pot:        Force
720  */
721 void
722 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse2_single
723                     (t_nblist * gmx_restrict                nlist,
724                      rvec * gmx_restrict                    xx,
725                      rvec * gmx_restrict                    ff,
726                      t_forcerec * gmx_restrict              fr,
727                      t_mdatoms * gmx_restrict               mdatoms,
728                      nb_kernel_data_t * gmx_restrict        kernel_data,
729                      t_nrnb * gmx_restrict                  nrnb)
730 {
731     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
732      * just 0 for non-waters.
733      * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
734      * jnr indices corresponding to data put in the four positions in the SIMD register.
735      */
736     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
737     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
738     int              jnrA,jnrB,jnrC,jnrD;
739     int              jnrlistA,jnrlistB,jnrlistC,jnrlistD;
740     int              j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
741     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
742     real             rcutoff_scalar;
743     real             *shiftvec,*fshift,*x,*f;
744     real             *fjptrA,*fjptrB,*fjptrC,*fjptrD;
745     real             scratch[4*DIM];
746     __m128           tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
747     int              vdwioffset0;
748     __m128           ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
749     int              vdwioffset1;
750     __m128           ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
751     int              vdwioffset2;
752     __m128           ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
753     int              vdwioffset3;
754     __m128           ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
755     int              vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
756     __m128           jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
757     __m128           dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
758     __m128           dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
759     __m128           dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
760     __m128           dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
761     __m128           velec,felec,velecsum,facel,crf,krf,krf2;
762     real             *charge;
763     int              nvdwtype;
764     __m128           rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
765     int              *vdwtype;
766     real             *vdwparam;
767     __m128           one_sixth   = _mm_set1_ps(1.0/6.0);
768     __m128           one_twelfth = _mm_set1_ps(1.0/12.0);
769     __m128i          vfitab;
770     __m128i          ifour       = _mm_set1_epi32(4);
771     __m128           rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
772     real             *vftab;
773     __m128           dummy_mask,cutoff_mask;
774     __m128           signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
775     __m128           one     = _mm_set1_ps(1.0);
776     __m128           two     = _mm_set1_ps(2.0);
777     x                = xx[0];
778     f                = ff[0];
779
780     nri              = nlist->nri;
781     iinr             = nlist->iinr;
782     jindex           = nlist->jindex;
783     jjnr             = nlist->jjnr;
784     shiftidx         = nlist->shift;
785     gid              = nlist->gid;
786     shiftvec         = fr->shift_vec[0];
787     fshift           = fr->fshift[0];
788     facel            = _mm_set1_ps(fr->epsfac);
789     charge           = mdatoms->chargeA;
790     nvdwtype         = fr->ntype;
791     vdwparam         = fr->nbfp;
792     vdwtype          = mdatoms->typeA;
793
794     vftab            = kernel_data->table_elec->data;
795     vftabscale       = _mm_set1_ps(kernel_data->table_elec->scale);
796
797     /* Setup water-specific parameters */
798     inr              = nlist->iinr[0];
799     iq1              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
800     iq2              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
801     iq3              = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
802     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
803
804     /* Avoid stupid compiler warnings */
805     jnrA = jnrB = jnrC = jnrD = 0;
806     j_coord_offsetA = 0;
807     j_coord_offsetB = 0;
808     j_coord_offsetC = 0;
809     j_coord_offsetD = 0;
810
811     outeriter        = 0;
812     inneriter        = 0;
813
814     for(iidx=0;iidx<4*DIM;iidx++)
815     {
816         scratch[iidx] = 0.0;
817     }  
818
819     /* Start outer loop over neighborlists */
820     for(iidx=0; iidx<nri; iidx++)
821     {
822         /* Load shift vector for this list */
823         i_shift_offset   = DIM*shiftidx[iidx];
824
825         /* Load limits for loop over neighbors */
826         j_index_start    = jindex[iidx];
827         j_index_end      = jindex[iidx+1];
828
829         /* Get outer coordinate index */
830         inr              = iinr[iidx];
831         i_coord_offset   = DIM*inr;
832
833         /* Load i particle coords and add shift vector */
834         gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
835                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
836         
837         fix0             = _mm_setzero_ps();
838         fiy0             = _mm_setzero_ps();
839         fiz0             = _mm_setzero_ps();
840         fix1             = _mm_setzero_ps();
841         fiy1             = _mm_setzero_ps();
842         fiz1             = _mm_setzero_ps();
843         fix2             = _mm_setzero_ps();
844         fiy2             = _mm_setzero_ps();
845         fiz2             = _mm_setzero_ps();
846         fix3             = _mm_setzero_ps();
847         fiy3             = _mm_setzero_ps();
848         fiz3             = _mm_setzero_ps();
849
850         /* Start inner kernel loop */
851         for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
852         {
853
854             /* Get j neighbor index, and coordinate index */
855             jnrA             = jjnr[jidx];
856             jnrB             = jjnr[jidx+1];
857             jnrC             = jjnr[jidx+2];
858             jnrD             = jjnr[jidx+3];
859             j_coord_offsetA  = DIM*jnrA;
860             j_coord_offsetB  = DIM*jnrB;
861             j_coord_offsetC  = DIM*jnrC;
862             j_coord_offsetD  = DIM*jnrD;
863
864             /* load j atom coordinates */
865             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
866                                               x+j_coord_offsetC,x+j_coord_offsetD,
867                                               &jx0,&jy0,&jz0);
868
869             /* Calculate displacement vector */
870             dx00             = _mm_sub_ps(ix0,jx0);
871             dy00             = _mm_sub_ps(iy0,jy0);
872             dz00             = _mm_sub_ps(iz0,jz0);
873             dx10             = _mm_sub_ps(ix1,jx0);
874             dy10             = _mm_sub_ps(iy1,jy0);
875             dz10             = _mm_sub_ps(iz1,jz0);
876             dx20             = _mm_sub_ps(ix2,jx0);
877             dy20             = _mm_sub_ps(iy2,jy0);
878             dz20             = _mm_sub_ps(iz2,jz0);
879             dx30             = _mm_sub_ps(ix3,jx0);
880             dy30             = _mm_sub_ps(iy3,jy0);
881             dz30             = _mm_sub_ps(iz3,jz0);
882
883             /* Calculate squared distance and things based on it */
884             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
885             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
886             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
887             rsq30            = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
888
889             rinv10           = gmx_mm_invsqrt_ps(rsq10);
890             rinv20           = gmx_mm_invsqrt_ps(rsq20);
891             rinv30           = gmx_mm_invsqrt_ps(rsq30);
892
893             rinvsq00         = gmx_mm_inv_ps(rsq00);
894
895             /* Load parameters for j particles */
896             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
897                                                               charge+jnrC+0,charge+jnrD+0);
898             vdwjidx0A        = 2*vdwtype[jnrA+0];
899             vdwjidx0B        = 2*vdwtype[jnrB+0];
900             vdwjidx0C        = 2*vdwtype[jnrC+0];
901             vdwjidx0D        = 2*vdwtype[jnrD+0];
902
903             fjx0             = _mm_setzero_ps();
904             fjy0             = _mm_setzero_ps();
905             fjz0             = _mm_setzero_ps();
906
907             /**************************
908              * CALCULATE INTERACTIONS *
909              **************************/
910
911             /* Compute parameters for interactions between i and j atoms */
912             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
913                                          vdwparam+vdwioffset0+vdwjidx0B,
914                                          vdwparam+vdwioffset0+vdwjidx0C,
915                                          vdwparam+vdwioffset0+vdwjidx0D,
916                                          &c6_00,&c12_00);
917
918             /* LENNARD-JONES DISPERSION/REPULSION */
919
920             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
921             fvdw             = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
922
923             fscal            = fvdw;
924
925             /* Calculate temporary vectorial force */
926             tx               = _mm_mul_ps(fscal,dx00);
927             ty               = _mm_mul_ps(fscal,dy00);
928             tz               = _mm_mul_ps(fscal,dz00);
929
930             /* Update vectorial force */
931             fix0             = _mm_add_ps(fix0,tx);
932             fiy0             = _mm_add_ps(fiy0,ty);
933             fiz0             = _mm_add_ps(fiz0,tz);
934
935             fjx0             = _mm_add_ps(fjx0,tx);
936             fjy0             = _mm_add_ps(fjy0,ty);
937             fjz0             = _mm_add_ps(fjz0,tz);
938             
939             /**************************
940              * CALCULATE INTERACTIONS *
941              **************************/
942
943             r10              = _mm_mul_ps(rsq10,rinv10);
944
945             /* Compute parameters for interactions between i and j atoms */
946             qq10             = _mm_mul_ps(iq1,jq0);
947
948             /* Calculate table index by multiplying r with table scale and truncate to integer */
949             rt               = _mm_mul_ps(r10,vftabscale);
950             vfitab           = _mm_cvttps_epi32(rt);
951             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
952             vfitab           = _mm_slli_epi32(vfitab,2);
953
954             /* CUBIC SPLINE TABLE ELECTROSTATICS */
955             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
956             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
957             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
958             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
959             _MM_TRANSPOSE4_PS(Y,F,G,H);
960             Heps             = _mm_mul_ps(vfeps,H);
961             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
962             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
963             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
964
965             fscal            = felec;
966
967             /* Calculate temporary vectorial force */
968             tx               = _mm_mul_ps(fscal,dx10);
969             ty               = _mm_mul_ps(fscal,dy10);
970             tz               = _mm_mul_ps(fscal,dz10);
971
972             /* Update vectorial force */
973             fix1             = _mm_add_ps(fix1,tx);
974             fiy1             = _mm_add_ps(fiy1,ty);
975             fiz1             = _mm_add_ps(fiz1,tz);
976
977             fjx0             = _mm_add_ps(fjx0,tx);
978             fjy0             = _mm_add_ps(fjy0,ty);
979             fjz0             = _mm_add_ps(fjz0,tz);
980             
981             /**************************
982              * CALCULATE INTERACTIONS *
983              **************************/
984
985             r20              = _mm_mul_ps(rsq20,rinv20);
986
987             /* Compute parameters for interactions between i and j atoms */
988             qq20             = _mm_mul_ps(iq2,jq0);
989
990             /* Calculate table index by multiplying r with table scale and truncate to integer */
991             rt               = _mm_mul_ps(r20,vftabscale);
992             vfitab           = _mm_cvttps_epi32(rt);
993             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
994             vfitab           = _mm_slli_epi32(vfitab,2);
995
996             /* CUBIC SPLINE TABLE ELECTROSTATICS */
997             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
998             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
999             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1000             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1001             _MM_TRANSPOSE4_PS(Y,F,G,H);
1002             Heps             = _mm_mul_ps(vfeps,H);
1003             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1004             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1005             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1006
1007             fscal            = felec;
1008
1009             /* Calculate temporary vectorial force */
1010             tx               = _mm_mul_ps(fscal,dx20);
1011             ty               = _mm_mul_ps(fscal,dy20);
1012             tz               = _mm_mul_ps(fscal,dz20);
1013
1014             /* Update vectorial force */
1015             fix2             = _mm_add_ps(fix2,tx);
1016             fiy2             = _mm_add_ps(fiy2,ty);
1017             fiz2             = _mm_add_ps(fiz2,tz);
1018
1019             fjx0             = _mm_add_ps(fjx0,tx);
1020             fjy0             = _mm_add_ps(fjy0,ty);
1021             fjz0             = _mm_add_ps(fjz0,tz);
1022             
1023             /**************************
1024              * CALCULATE INTERACTIONS *
1025              **************************/
1026
1027             r30              = _mm_mul_ps(rsq30,rinv30);
1028
1029             /* Compute parameters for interactions between i and j atoms */
1030             qq30             = _mm_mul_ps(iq3,jq0);
1031
1032             /* Calculate table index by multiplying r with table scale and truncate to integer */
1033             rt               = _mm_mul_ps(r30,vftabscale);
1034             vfitab           = _mm_cvttps_epi32(rt);
1035             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1036             vfitab           = _mm_slli_epi32(vfitab,2);
1037
1038             /* CUBIC SPLINE TABLE ELECTROSTATICS */
1039             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1040             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1041             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1042             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1043             _MM_TRANSPOSE4_PS(Y,F,G,H);
1044             Heps             = _mm_mul_ps(vfeps,H);
1045             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1046             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1047             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1048
1049             fscal            = felec;
1050
1051             /* Calculate temporary vectorial force */
1052             tx               = _mm_mul_ps(fscal,dx30);
1053             ty               = _mm_mul_ps(fscal,dy30);
1054             tz               = _mm_mul_ps(fscal,dz30);
1055
1056             /* Update vectorial force */
1057             fix3             = _mm_add_ps(fix3,tx);
1058             fiy3             = _mm_add_ps(fiy3,ty);
1059             fiz3             = _mm_add_ps(fiz3,tz);
1060
1061             fjx0             = _mm_add_ps(fjx0,tx);
1062             fjy0             = _mm_add_ps(fjy0,ty);
1063             fjz0             = _mm_add_ps(fjz0,tz);
1064             
1065             fjptrA             = f+j_coord_offsetA;
1066             fjptrB             = f+j_coord_offsetB;
1067             fjptrC             = f+j_coord_offsetC;
1068             fjptrD             = f+j_coord_offsetD;
1069
1070             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1071
1072             /* Inner loop uses 144 flops */
1073         }
1074
1075         if(jidx<j_index_end)
1076         {
1077
1078             /* Get j neighbor index, and coordinate index */
1079             jnrlistA         = jjnr[jidx];
1080             jnrlistB         = jjnr[jidx+1];
1081             jnrlistC         = jjnr[jidx+2];
1082             jnrlistD         = jjnr[jidx+3];
1083             /* Sign of each element will be negative for non-real atoms.
1084              * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1085              * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1086              */
1087             dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1088             jnrA       = (jnrlistA>=0) ? jnrlistA : 0;
1089             jnrB       = (jnrlistB>=0) ? jnrlistB : 0;
1090             jnrC       = (jnrlistC>=0) ? jnrlistC : 0;
1091             jnrD       = (jnrlistD>=0) ? jnrlistD : 0;
1092             j_coord_offsetA  = DIM*jnrA;
1093             j_coord_offsetB  = DIM*jnrB;
1094             j_coord_offsetC  = DIM*jnrC;
1095             j_coord_offsetD  = DIM*jnrD;
1096
1097             /* load j atom coordinates */
1098             gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1099                                               x+j_coord_offsetC,x+j_coord_offsetD,
1100                                               &jx0,&jy0,&jz0);
1101
1102             /* Calculate displacement vector */
1103             dx00             = _mm_sub_ps(ix0,jx0);
1104             dy00             = _mm_sub_ps(iy0,jy0);
1105             dz00             = _mm_sub_ps(iz0,jz0);
1106             dx10             = _mm_sub_ps(ix1,jx0);
1107             dy10             = _mm_sub_ps(iy1,jy0);
1108             dz10             = _mm_sub_ps(iz1,jz0);
1109             dx20             = _mm_sub_ps(ix2,jx0);
1110             dy20             = _mm_sub_ps(iy2,jy0);
1111             dz20             = _mm_sub_ps(iz2,jz0);
1112             dx30             = _mm_sub_ps(ix3,jx0);
1113             dy30             = _mm_sub_ps(iy3,jy0);
1114             dz30             = _mm_sub_ps(iz3,jz0);
1115
1116             /* Calculate squared distance and things based on it */
1117             rsq00            = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1118             rsq10            = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1119             rsq20            = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1120             rsq30            = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1121
1122             rinv10           = gmx_mm_invsqrt_ps(rsq10);
1123             rinv20           = gmx_mm_invsqrt_ps(rsq20);
1124             rinv30           = gmx_mm_invsqrt_ps(rsq30);
1125
1126             rinvsq00         = gmx_mm_inv_ps(rsq00);
1127
1128             /* Load parameters for j particles */
1129             jq0              = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1130                                                               charge+jnrC+0,charge+jnrD+0);
1131             vdwjidx0A        = 2*vdwtype[jnrA+0];
1132             vdwjidx0B        = 2*vdwtype[jnrB+0];
1133             vdwjidx0C        = 2*vdwtype[jnrC+0];
1134             vdwjidx0D        = 2*vdwtype[jnrD+0];
1135
1136             fjx0             = _mm_setzero_ps();
1137             fjy0             = _mm_setzero_ps();
1138             fjz0             = _mm_setzero_ps();
1139
1140             /**************************
1141              * CALCULATE INTERACTIONS *
1142              **************************/
1143
1144             /* Compute parameters for interactions between i and j atoms */
1145             gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1146                                          vdwparam+vdwioffset0+vdwjidx0B,
1147                                          vdwparam+vdwioffset0+vdwjidx0C,
1148                                          vdwparam+vdwioffset0+vdwjidx0D,
1149                                          &c6_00,&c12_00);
1150
1151             /* LENNARD-JONES DISPERSION/REPULSION */
1152
1153             rinvsix          = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1154             fvdw             = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1155
1156             fscal            = fvdw;
1157
1158             fscal            = _mm_andnot_ps(dummy_mask,fscal);
1159
1160             /* Calculate temporary vectorial force */
1161             tx               = _mm_mul_ps(fscal,dx00);
1162             ty               = _mm_mul_ps(fscal,dy00);
1163             tz               = _mm_mul_ps(fscal,dz00);
1164
1165             /* Update vectorial force */
1166             fix0             = _mm_add_ps(fix0,tx);
1167             fiy0             = _mm_add_ps(fiy0,ty);
1168             fiz0             = _mm_add_ps(fiz0,tz);
1169
1170             fjx0             = _mm_add_ps(fjx0,tx);
1171             fjy0             = _mm_add_ps(fjy0,ty);
1172             fjz0             = _mm_add_ps(fjz0,tz);
1173             
1174             /**************************
1175              * CALCULATE INTERACTIONS *
1176              **************************/
1177
1178             r10              = _mm_mul_ps(rsq10,rinv10);
1179             r10              = _mm_andnot_ps(dummy_mask,r10);
1180
1181             /* Compute parameters for interactions between i and j atoms */
1182             qq10             = _mm_mul_ps(iq1,jq0);
1183
1184             /* Calculate table index by multiplying r with table scale and truncate to integer */
1185             rt               = _mm_mul_ps(r10,vftabscale);
1186             vfitab           = _mm_cvttps_epi32(rt);
1187             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1188             vfitab           = _mm_slli_epi32(vfitab,2);
1189
1190             /* CUBIC SPLINE TABLE ELECTROSTATICS */
1191             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1192             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1193             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1194             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1195             _MM_TRANSPOSE4_PS(Y,F,G,H);
1196             Heps             = _mm_mul_ps(vfeps,H);
1197             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1198             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1199             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1200
1201             fscal            = felec;
1202
1203             fscal            = _mm_andnot_ps(dummy_mask,fscal);
1204
1205             /* Calculate temporary vectorial force */
1206             tx               = _mm_mul_ps(fscal,dx10);
1207             ty               = _mm_mul_ps(fscal,dy10);
1208             tz               = _mm_mul_ps(fscal,dz10);
1209
1210             /* Update vectorial force */
1211             fix1             = _mm_add_ps(fix1,tx);
1212             fiy1             = _mm_add_ps(fiy1,ty);
1213             fiz1             = _mm_add_ps(fiz1,tz);
1214
1215             fjx0             = _mm_add_ps(fjx0,tx);
1216             fjy0             = _mm_add_ps(fjy0,ty);
1217             fjz0             = _mm_add_ps(fjz0,tz);
1218             
1219             /**************************
1220              * CALCULATE INTERACTIONS *
1221              **************************/
1222
1223             r20              = _mm_mul_ps(rsq20,rinv20);
1224             r20              = _mm_andnot_ps(dummy_mask,r20);
1225
1226             /* Compute parameters for interactions between i and j atoms */
1227             qq20             = _mm_mul_ps(iq2,jq0);
1228
1229             /* Calculate table index by multiplying r with table scale and truncate to integer */
1230             rt               = _mm_mul_ps(r20,vftabscale);
1231             vfitab           = _mm_cvttps_epi32(rt);
1232             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1233             vfitab           = _mm_slli_epi32(vfitab,2);
1234
1235             /* CUBIC SPLINE TABLE ELECTROSTATICS */
1236             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1237             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1238             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1239             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1240             _MM_TRANSPOSE4_PS(Y,F,G,H);
1241             Heps             = _mm_mul_ps(vfeps,H);
1242             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1243             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1244             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1245
1246             fscal            = felec;
1247
1248             fscal            = _mm_andnot_ps(dummy_mask,fscal);
1249
1250             /* Calculate temporary vectorial force */
1251             tx               = _mm_mul_ps(fscal,dx20);
1252             ty               = _mm_mul_ps(fscal,dy20);
1253             tz               = _mm_mul_ps(fscal,dz20);
1254
1255             /* Update vectorial force */
1256             fix2             = _mm_add_ps(fix2,tx);
1257             fiy2             = _mm_add_ps(fiy2,ty);
1258             fiz2             = _mm_add_ps(fiz2,tz);
1259
1260             fjx0             = _mm_add_ps(fjx0,tx);
1261             fjy0             = _mm_add_ps(fjy0,ty);
1262             fjz0             = _mm_add_ps(fjz0,tz);
1263             
1264             /**************************
1265              * CALCULATE INTERACTIONS *
1266              **************************/
1267
1268             r30              = _mm_mul_ps(rsq30,rinv30);
1269             r30              = _mm_andnot_ps(dummy_mask,r30);
1270
1271             /* Compute parameters for interactions between i and j atoms */
1272             qq30             = _mm_mul_ps(iq3,jq0);
1273
1274             /* Calculate table index by multiplying r with table scale and truncate to integer */
1275             rt               = _mm_mul_ps(r30,vftabscale);
1276             vfitab           = _mm_cvttps_epi32(rt);
1277             vfeps            = _mm_sub_ps(rt,_mm_cvtepi32_ps(vfitab));
1278             vfitab           = _mm_slli_epi32(vfitab,2);
1279
1280             /* CUBIC SPLINE TABLE ELECTROSTATICS */
1281             Y                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1282             F                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1283             G                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1284             H                = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1285             _MM_TRANSPOSE4_PS(Y,F,G,H);
1286             Heps             = _mm_mul_ps(vfeps,H);
1287             Fp               = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1288             FF               = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1289             felec            = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1290
1291             fscal            = felec;
1292
1293             fscal            = _mm_andnot_ps(dummy_mask,fscal);
1294
1295             /* Calculate temporary vectorial force */
1296             tx               = _mm_mul_ps(fscal,dx30);
1297             ty               = _mm_mul_ps(fscal,dy30);
1298             tz               = _mm_mul_ps(fscal,dz30);
1299
1300             /* Update vectorial force */
1301             fix3             = _mm_add_ps(fix3,tx);
1302             fiy3             = _mm_add_ps(fiy3,ty);
1303             fiz3             = _mm_add_ps(fiz3,tz);
1304
1305             fjx0             = _mm_add_ps(fjx0,tx);
1306             fjy0             = _mm_add_ps(fjy0,ty);
1307             fjz0             = _mm_add_ps(fjz0,tz);
1308             
1309             fjptrA             = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1310             fjptrB             = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1311             fjptrC             = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1312             fjptrD             = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1313
1314             gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1315
1316             /* Inner loop uses 147 flops */
1317         }
1318
1319         /* End of innermost loop */
1320
1321         gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1322                                               f+i_coord_offset,fshift+i_shift_offset);
1323
1324         /* Increment number of inner iterations */
1325         inneriter                  += j_index_end - j_index_start;
1326
1327         /* Outer loop uses 24 flops */
1328     }
1329
1330     /* Increment number of outer iterations */
1331     outeriter        += nri;
1332
1333     /* Update outer/inner flops */
1334
1335     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*147);
1336 }