made errors during GPU detection non-fatal
[alexxy/gromacs.git] / src / gmxlib / nonbonded / nb_kernel_sse2_double / nb_kernel_ElecCoul_VdwLJ_GeomW4P1_sse2_double.c
1 /*
2  * Note: this file was generated by the Gromacs sse2_double kernel generator.
3  *
4  *                This source code is part of
5  *
6  *                 G   R   O   M   A   C   S
7  *
8  * Copyright (c) 2001-2012, The GROMACS Development Team
9  *
10  * Gromacs is a library for molecular simulation and trajectory analysis,
11  * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12  * a full list of developers and information, check out http://www.gromacs.org
13  *
14  * This program is free software; you can redistribute it and/or modify it under
15  * the terms of the GNU Lesser General Public License as published by the Free
16  * Software Foundation; either version 2 of the License, or (at your option) any
17  * later version.
18  *
19  * To help fund GROMACS development, we humbly ask that you cite
20  * the papers people have written on it - you can find them on the website.
21  */
22 #ifdef HAVE_CONFIG_H
23 #include <config.h>
24 #endif
25
26 #include <math.h>
27
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
30 #include "vec.h"
31 #include "nrnb.h"
32
33 #include "gmx_math_x86_sse2_double.h"
34 #include "kernelutil_x86_sse2_double.h"
35
36 /*
37  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW4P1_VF_sse2_double
38  * Electrostatics interaction: Coulomb
39  * VdW interaction:            LennardJones
40  * Geometry:                   Water4-Particle
41  * Calculate force/pot:        PotentialAndForce
42  */
43 void
44 nb_kernel_ElecCoul_VdwLJ_GeomW4P1_VF_sse2_double
45                     (t_nblist * gmx_restrict                nlist,
46                      rvec * gmx_restrict                    xx,
47                      rvec * gmx_restrict                    ff,
48                      t_forcerec * gmx_restrict              fr,
49                      t_mdatoms * gmx_restrict               mdatoms,
50                      nb_kernel_data_t * gmx_restrict        kernel_data,
51                      t_nrnb * gmx_restrict                  nrnb)
52 {
53     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
54      * just 0 for non-waters.
55      * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
56      * jnr indices corresponding to data put in the four positions in the SIMD register.
57      */
58     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
59     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60     int              jnrA,jnrB;
61     int              j_coord_offsetA,j_coord_offsetB;
62     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
63     real             rcutoff_scalar;
64     real             *shiftvec,*fshift,*x,*f;
65     __m128d          tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
66     int              vdwioffset0;
67     __m128d          ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68     int              vdwioffset1;
69     __m128d          ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
70     int              vdwioffset2;
71     __m128d          ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
72     int              vdwioffset3;
73     __m128d          ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
74     int              vdwjidx0A,vdwjidx0B;
75     __m128d          jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
76     __m128d          dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
77     __m128d          dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
78     __m128d          dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
79     __m128d          dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
80     __m128d          velec,felec,velecsum,facel,crf,krf,krf2;
81     real             *charge;
82     int              nvdwtype;
83     __m128d          rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
84     int              *vdwtype;
85     real             *vdwparam;
86     __m128d          one_sixth   = _mm_set1_pd(1.0/6.0);
87     __m128d          one_twelfth = _mm_set1_pd(1.0/12.0);
88     __m128d          dummy_mask,cutoff_mask;
89     __m128d          signbit   = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
90     __m128d          one     = _mm_set1_pd(1.0);
91     __m128d          two     = _mm_set1_pd(2.0);
92     x                = xx[0];
93     f                = ff[0];
94
95     nri              = nlist->nri;
96     iinr             = nlist->iinr;
97     jindex           = nlist->jindex;
98     jjnr             = nlist->jjnr;
99     shiftidx         = nlist->shift;
100     gid              = nlist->gid;
101     shiftvec         = fr->shift_vec[0];
102     fshift           = fr->fshift[0];
103     facel            = _mm_set1_pd(fr->epsfac);
104     charge           = mdatoms->chargeA;
105     nvdwtype         = fr->ntype;
106     vdwparam         = fr->nbfp;
107     vdwtype          = mdatoms->typeA;
108
109     /* Setup water-specific parameters */
110     inr              = nlist->iinr[0];
111     iq1              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
112     iq2              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
113     iq3              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
114     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
115
116     /* Avoid stupid compiler warnings */
117     jnrA = jnrB = 0;
118     j_coord_offsetA = 0;
119     j_coord_offsetB = 0;
120
121     outeriter        = 0;
122     inneriter        = 0;
123
124     /* Start outer loop over neighborlists */
125     for(iidx=0; iidx<nri; iidx++)
126     {
127         /* Load shift vector for this list */
128         i_shift_offset   = DIM*shiftidx[iidx];
129
130         /* Load limits for loop over neighbors */
131         j_index_start    = jindex[iidx];
132         j_index_end      = jindex[iidx+1];
133
134         /* Get outer coordinate index */
135         inr              = iinr[iidx];
136         i_coord_offset   = DIM*inr;
137
138         /* Load i particle coords and add shift vector */
139         gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
140                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
141
142         fix0             = _mm_setzero_pd();
143         fiy0             = _mm_setzero_pd();
144         fiz0             = _mm_setzero_pd();
145         fix1             = _mm_setzero_pd();
146         fiy1             = _mm_setzero_pd();
147         fiz1             = _mm_setzero_pd();
148         fix2             = _mm_setzero_pd();
149         fiy2             = _mm_setzero_pd();
150         fiz2             = _mm_setzero_pd();
151         fix3             = _mm_setzero_pd();
152         fiy3             = _mm_setzero_pd();
153         fiz3             = _mm_setzero_pd();
154
155         /* Reset potential sums */
156         velecsum         = _mm_setzero_pd();
157         vvdwsum          = _mm_setzero_pd();
158
159         /* Start inner kernel loop */
160         for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
161         {
162
163             /* Get j neighbor index, and coordinate index */
164             jnrA             = jjnr[jidx];
165             jnrB             = jjnr[jidx+1];
166             j_coord_offsetA  = DIM*jnrA;
167             j_coord_offsetB  = DIM*jnrB;
168             
169             /* load j atom coordinates */
170             gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
171                                               &jx0,&jy0,&jz0);
172             
173             /* Calculate displacement vector */
174             dx00             = _mm_sub_pd(ix0,jx0);
175             dy00             = _mm_sub_pd(iy0,jy0);
176             dz00             = _mm_sub_pd(iz0,jz0);
177             dx10             = _mm_sub_pd(ix1,jx0);
178             dy10             = _mm_sub_pd(iy1,jy0);
179             dz10             = _mm_sub_pd(iz1,jz0);
180             dx20             = _mm_sub_pd(ix2,jx0);
181             dy20             = _mm_sub_pd(iy2,jy0);
182             dz20             = _mm_sub_pd(iz2,jz0);
183             dx30             = _mm_sub_pd(ix3,jx0);
184             dy30             = _mm_sub_pd(iy3,jy0);
185             dz30             = _mm_sub_pd(iz3,jz0);
186
187             /* Calculate squared distance and things based on it */
188             rsq00            = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
189             rsq10            = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
190             rsq20            = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
191             rsq30            = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
192
193             rinv10           = gmx_mm_invsqrt_pd(rsq10);
194             rinv20           = gmx_mm_invsqrt_pd(rsq20);
195             rinv30           = gmx_mm_invsqrt_pd(rsq30);
196
197             rinvsq00         = gmx_mm_inv_pd(rsq00);
198             rinvsq10         = _mm_mul_pd(rinv10,rinv10);
199             rinvsq20         = _mm_mul_pd(rinv20,rinv20);
200             rinvsq30         = _mm_mul_pd(rinv30,rinv30);
201
202             /* Load parameters for j particles */
203             jq0              = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
204             vdwjidx0A        = 2*vdwtype[jnrA+0];
205             vdwjidx0B        = 2*vdwtype[jnrB+0];
206
207             fjx0             = _mm_setzero_pd();
208             fjy0             = _mm_setzero_pd();
209             fjz0             = _mm_setzero_pd();
210
211             /**************************
212              * CALCULATE INTERACTIONS *
213              **************************/
214
215             /* Compute parameters for interactions between i and j atoms */
216             gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
217                                          vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
218
219             /* LENNARD-JONES DISPERSION/REPULSION */
220
221             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
222             vvdw6            = _mm_mul_pd(c6_00,rinvsix);
223             vvdw12           = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
224             vvdw             = _mm_sub_pd( _mm_mul_pd(vvdw12,one_twelfth) , _mm_mul_pd(vvdw6,one_sixth) );
225             fvdw             = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
226
227             /* Update potential sum for this i atom from the interaction with this j atom. */
228             vvdwsum          = _mm_add_pd(vvdwsum,vvdw);
229
230             fscal            = fvdw;
231
232             /* Calculate temporary vectorial force */
233             tx               = _mm_mul_pd(fscal,dx00);
234             ty               = _mm_mul_pd(fscal,dy00);
235             tz               = _mm_mul_pd(fscal,dz00);
236
237             /* Update vectorial force */
238             fix0             = _mm_add_pd(fix0,tx);
239             fiy0             = _mm_add_pd(fiy0,ty);
240             fiz0             = _mm_add_pd(fiz0,tz);
241
242             fjx0             = _mm_add_pd(fjx0,tx);
243             fjy0             = _mm_add_pd(fjy0,ty);
244             fjz0             = _mm_add_pd(fjz0,tz);
245
246             /**************************
247              * CALCULATE INTERACTIONS *
248              **************************/
249
250             /* Compute parameters for interactions between i and j atoms */
251             qq10             = _mm_mul_pd(iq1,jq0);
252
253             /* COULOMB ELECTROSTATICS */
254             velec            = _mm_mul_pd(qq10,rinv10);
255             felec            = _mm_mul_pd(velec,rinvsq10);
256
257             /* Update potential sum for this i atom from the interaction with this j atom. */
258             velecsum         = _mm_add_pd(velecsum,velec);
259
260             fscal            = felec;
261
262             /* Calculate temporary vectorial force */
263             tx               = _mm_mul_pd(fscal,dx10);
264             ty               = _mm_mul_pd(fscal,dy10);
265             tz               = _mm_mul_pd(fscal,dz10);
266
267             /* Update vectorial force */
268             fix1             = _mm_add_pd(fix1,tx);
269             fiy1             = _mm_add_pd(fiy1,ty);
270             fiz1             = _mm_add_pd(fiz1,tz);
271
272             fjx0             = _mm_add_pd(fjx0,tx);
273             fjy0             = _mm_add_pd(fjy0,ty);
274             fjz0             = _mm_add_pd(fjz0,tz);
275
276             /**************************
277              * CALCULATE INTERACTIONS *
278              **************************/
279
280             /* Compute parameters for interactions between i and j atoms */
281             qq20             = _mm_mul_pd(iq2,jq0);
282
283             /* COULOMB ELECTROSTATICS */
284             velec            = _mm_mul_pd(qq20,rinv20);
285             felec            = _mm_mul_pd(velec,rinvsq20);
286
287             /* Update potential sum for this i atom from the interaction with this j atom. */
288             velecsum         = _mm_add_pd(velecsum,velec);
289
290             fscal            = felec;
291
292             /* Calculate temporary vectorial force */
293             tx               = _mm_mul_pd(fscal,dx20);
294             ty               = _mm_mul_pd(fscal,dy20);
295             tz               = _mm_mul_pd(fscal,dz20);
296
297             /* Update vectorial force */
298             fix2             = _mm_add_pd(fix2,tx);
299             fiy2             = _mm_add_pd(fiy2,ty);
300             fiz2             = _mm_add_pd(fiz2,tz);
301
302             fjx0             = _mm_add_pd(fjx0,tx);
303             fjy0             = _mm_add_pd(fjy0,ty);
304             fjz0             = _mm_add_pd(fjz0,tz);
305
306             /**************************
307              * CALCULATE INTERACTIONS *
308              **************************/
309
310             /* Compute parameters for interactions between i and j atoms */
311             qq30             = _mm_mul_pd(iq3,jq0);
312
313             /* COULOMB ELECTROSTATICS */
314             velec            = _mm_mul_pd(qq30,rinv30);
315             felec            = _mm_mul_pd(velec,rinvsq30);
316
317             /* Update potential sum for this i atom from the interaction with this j atom. */
318             velecsum         = _mm_add_pd(velecsum,velec);
319
320             fscal            = felec;
321
322             /* Calculate temporary vectorial force */
323             tx               = _mm_mul_pd(fscal,dx30);
324             ty               = _mm_mul_pd(fscal,dy30);
325             tz               = _mm_mul_pd(fscal,dz30);
326
327             /* Update vectorial force */
328             fix3             = _mm_add_pd(fix3,tx);
329             fiy3             = _mm_add_pd(fiy3,ty);
330             fiz3             = _mm_add_pd(fiz3,tz);
331
332             fjx0             = _mm_add_pd(fjx0,tx);
333             fjy0             = _mm_add_pd(fjy0,ty);
334             fjz0             = _mm_add_pd(fjz0,tz);
335
336             gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
337
338             /* Inner loop uses 119 flops */
339         }
340
341         if(jidx<j_index_end)
342         {
343
344             jnrA             = jjnr[jidx];
345             j_coord_offsetA  = DIM*jnrA;
346
347             /* load j atom coordinates */
348             gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
349                                               &jx0,&jy0,&jz0);
350             
351             /* Calculate displacement vector */
352             dx00             = _mm_sub_pd(ix0,jx0);
353             dy00             = _mm_sub_pd(iy0,jy0);
354             dz00             = _mm_sub_pd(iz0,jz0);
355             dx10             = _mm_sub_pd(ix1,jx0);
356             dy10             = _mm_sub_pd(iy1,jy0);
357             dz10             = _mm_sub_pd(iz1,jz0);
358             dx20             = _mm_sub_pd(ix2,jx0);
359             dy20             = _mm_sub_pd(iy2,jy0);
360             dz20             = _mm_sub_pd(iz2,jz0);
361             dx30             = _mm_sub_pd(ix3,jx0);
362             dy30             = _mm_sub_pd(iy3,jy0);
363             dz30             = _mm_sub_pd(iz3,jz0);
364
365             /* Calculate squared distance and things based on it */
366             rsq00            = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
367             rsq10            = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
368             rsq20            = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
369             rsq30            = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
370
371             rinv10           = gmx_mm_invsqrt_pd(rsq10);
372             rinv20           = gmx_mm_invsqrt_pd(rsq20);
373             rinv30           = gmx_mm_invsqrt_pd(rsq30);
374
375             rinvsq00         = gmx_mm_inv_pd(rsq00);
376             rinvsq10         = _mm_mul_pd(rinv10,rinv10);
377             rinvsq20         = _mm_mul_pd(rinv20,rinv20);
378             rinvsq30         = _mm_mul_pd(rinv30,rinv30);
379
380             /* Load parameters for j particles */
381             jq0              = _mm_load_sd(charge+jnrA+0);
382             vdwjidx0A        = 2*vdwtype[jnrA+0];
383
384             fjx0             = _mm_setzero_pd();
385             fjy0             = _mm_setzero_pd();
386             fjz0             = _mm_setzero_pd();
387
388             /**************************
389              * CALCULATE INTERACTIONS *
390              **************************/
391
392             /* Compute parameters for interactions between i and j atoms */
393             gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
394
395             /* LENNARD-JONES DISPERSION/REPULSION */
396
397             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
398             vvdw6            = _mm_mul_pd(c6_00,rinvsix);
399             vvdw12           = _mm_mul_pd(c12_00,_mm_mul_pd(rinvsix,rinvsix));
400             vvdw             = _mm_sub_pd( _mm_mul_pd(vvdw12,one_twelfth) , _mm_mul_pd(vvdw6,one_sixth) );
401             fvdw             = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq00);
402
403             /* Update potential sum for this i atom from the interaction with this j atom. */
404             vvdw             = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
405             vvdwsum          = _mm_add_pd(vvdwsum,vvdw);
406
407             fscal            = fvdw;
408
409             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
410
411             /* Calculate temporary vectorial force */
412             tx               = _mm_mul_pd(fscal,dx00);
413             ty               = _mm_mul_pd(fscal,dy00);
414             tz               = _mm_mul_pd(fscal,dz00);
415
416             /* Update vectorial force */
417             fix0             = _mm_add_pd(fix0,tx);
418             fiy0             = _mm_add_pd(fiy0,ty);
419             fiz0             = _mm_add_pd(fiz0,tz);
420
421             fjx0             = _mm_add_pd(fjx0,tx);
422             fjy0             = _mm_add_pd(fjy0,ty);
423             fjz0             = _mm_add_pd(fjz0,tz);
424
425             /**************************
426              * CALCULATE INTERACTIONS *
427              **************************/
428
429             /* Compute parameters for interactions between i and j atoms */
430             qq10             = _mm_mul_pd(iq1,jq0);
431
432             /* COULOMB ELECTROSTATICS */
433             velec            = _mm_mul_pd(qq10,rinv10);
434             felec            = _mm_mul_pd(velec,rinvsq10);
435
436             /* Update potential sum for this i atom from the interaction with this j atom. */
437             velec            = _mm_unpacklo_pd(velec,_mm_setzero_pd());
438             velecsum         = _mm_add_pd(velecsum,velec);
439
440             fscal            = felec;
441
442             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
443
444             /* Calculate temporary vectorial force */
445             tx               = _mm_mul_pd(fscal,dx10);
446             ty               = _mm_mul_pd(fscal,dy10);
447             tz               = _mm_mul_pd(fscal,dz10);
448
449             /* Update vectorial force */
450             fix1             = _mm_add_pd(fix1,tx);
451             fiy1             = _mm_add_pd(fiy1,ty);
452             fiz1             = _mm_add_pd(fiz1,tz);
453
454             fjx0             = _mm_add_pd(fjx0,tx);
455             fjy0             = _mm_add_pd(fjy0,ty);
456             fjz0             = _mm_add_pd(fjz0,tz);
457
458             /**************************
459              * CALCULATE INTERACTIONS *
460              **************************/
461
462             /* Compute parameters for interactions between i and j atoms */
463             qq20             = _mm_mul_pd(iq2,jq0);
464
465             /* COULOMB ELECTROSTATICS */
466             velec            = _mm_mul_pd(qq20,rinv20);
467             felec            = _mm_mul_pd(velec,rinvsq20);
468
469             /* Update potential sum for this i atom from the interaction with this j atom. */
470             velec            = _mm_unpacklo_pd(velec,_mm_setzero_pd());
471             velecsum         = _mm_add_pd(velecsum,velec);
472
473             fscal            = felec;
474
475             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
476
477             /* Calculate temporary vectorial force */
478             tx               = _mm_mul_pd(fscal,dx20);
479             ty               = _mm_mul_pd(fscal,dy20);
480             tz               = _mm_mul_pd(fscal,dz20);
481
482             /* Update vectorial force */
483             fix2             = _mm_add_pd(fix2,tx);
484             fiy2             = _mm_add_pd(fiy2,ty);
485             fiz2             = _mm_add_pd(fiz2,tz);
486
487             fjx0             = _mm_add_pd(fjx0,tx);
488             fjy0             = _mm_add_pd(fjy0,ty);
489             fjz0             = _mm_add_pd(fjz0,tz);
490
491             /**************************
492              * CALCULATE INTERACTIONS *
493              **************************/
494
495             /* Compute parameters for interactions between i and j atoms */
496             qq30             = _mm_mul_pd(iq3,jq0);
497
498             /* COULOMB ELECTROSTATICS */
499             velec            = _mm_mul_pd(qq30,rinv30);
500             felec            = _mm_mul_pd(velec,rinvsq30);
501
502             /* Update potential sum for this i atom from the interaction with this j atom. */
503             velec            = _mm_unpacklo_pd(velec,_mm_setzero_pd());
504             velecsum         = _mm_add_pd(velecsum,velec);
505
506             fscal            = felec;
507
508             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
509
510             /* Calculate temporary vectorial force */
511             tx               = _mm_mul_pd(fscal,dx30);
512             ty               = _mm_mul_pd(fscal,dy30);
513             tz               = _mm_mul_pd(fscal,dz30);
514
515             /* Update vectorial force */
516             fix3             = _mm_add_pd(fix3,tx);
517             fiy3             = _mm_add_pd(fiy3,ty);
518             fiz3             = _mm_add_pd(fiz3,tz);
519
520             fjx0             = _mm_add_pd(fjx0,tx);
521             fjy0             = _mm_add_pd(fjy0,ty);
522             fjz0             = _mm_add_pd(fjz0,tz);
523
524             gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
525
526             /* Inner loop uses 119 flops */
527         }
528
529         /* End of innermost loop */
530
531         gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
532                                               f+i_coord_offset,fshift+i_shift_offset);
533
534         ggid                        = gid[iidx];
535         /* Update potential energies */
536         gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
537         gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
538
539         /* Increment number of inner iterations */
540         inneriter                  += j_index_end - j_index_start;
541
542         /* Outer loop uses 26 flops */
543     }
544
545     /* Increment number of outer iterations */
546     outeriter        += nri;
547
548     /* Update outer/inner flops */
549
550     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*119);
551 }
552 /*
553  * Gromacs nonbonded kernel:   nb_kernel_ElecCoul_VdwLJ_GeomW4P1_F_sse2_double
554  * Electrostatics interaction: Coulomb
555  * VdW interaction:            LennardJones
556  * Geometry:                   Water4-Particle
557  * Calculate force/pot:        Force
558  */
559 void
560 nb_kernel_ElecCoul_VdwLJ_GeomW4P1_F_sse2_double
561                     (t_nblist * gmx_restrict                nlist,
562                      rvec * gmx_restrict                    xx,
563                      rvec * gmx_restrict                    ff,
564                      t_forcerec * gmx_restrict              fr,
565                      t_mdatoms * gmx_restrict               mdatoms,
566                      nb_kernel_data_t * gmx_restrict        kernel_data,
567                      t_nrnb * gmx_restrict                  nrnb)
568 {
569     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or 
570      * just 0 for non-waters.
571      * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
572      * jnr indices corresponding to data put in the four positions in the SIMD register.
573      */
574     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
575     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
576     int              jnrA,jnrB;
577     int              j_coord_offsetA,j_coord_offsetB;
578     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
579     real             rcutoff_scalar;
580     real             *shiftvec,*fshift,*x,*f;
581     __m128d          tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
582     int              vdwioffset0;
583     __m128d          ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
584     int              vdwioffset1;
585     __m128d          ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
586     int              vdwioffset2;
587     __m128d          ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
588     int              vdwioffset3;
589     __m128d          ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
590     int              vdwjidx0A,vdwjidx0B;
591     __m128d          jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
592     __m128d          dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
593     __m128d          dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
594     __m128d          dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
595     __m128d          dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
596     __m128d          velec,felec,velecsum,facel,crf,krf,krf2;
597     real             *charge;
598     int              nvdwtype;
599     __m128d          rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
600     int              *vdwtype;
601     real             *vdwparam;
602     __m128d          one_sixth   = _mm_set1_pd(1.0/6.0);
603     __m128d          one_twelfth = _mm_set1_pd(1.0/12.0);
604     __m128d          dummy_mask,cutoff_mask;
605     __m128d          signbit   = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
606     __m128d          one     = _mm_set1_pd(1.0);
607     __m128d          two     = _mm_set1_pd(2.0);
608     x                = xx[0];
609     f                = ff[0];
610
611     nri              = nlist->nri;
612     iinr             = nlist->iinr;
613     jindex           = nlist->jindex;
614     jjnr             = nlist->jjnr;
615     shiftidx         = nlist->shift;
616     gid              = nlist->gid;
617     shiftvec         = fr->shift_vec[0];
618     fshift           = fr->fshift[0];
619     facel            = _mm_set1_pd(fr->epsfac);
620     charge           = mdatoms->chargeA;
621     nvdwtype         = fr->ntype;
622     vdwparam         = fr->nbfp;
623     vdwtype          = mdatoms->typeA;
624
625     /* Setup water-specific parameters */
626     inr              = nlist->iinr[0];
627     iq1              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+1]));
628     iq2              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+2]));
629     iq3              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+3]));
630     vdwioffset0      = 2*nvdwtype*vdwtype[inr+0];
631
632     /* Avoid stupid compiler warnings */
633     jnrA = jnrB = 0;
634     j_coord_offsetA = 0;
635     j_coord_offsetB = 0;
636
637     outeriter        = 0;
638     inneriter        = 0;
639
640     /* Start outer loop over neighborlists */
641     for(iidx=0; iidx<nri; iidx++)
642     {
643         /* Load shift vector for this list */
644         i_shift_offset   = DIM*shiftidx[iidx];
645
646         /* Load limits for loop over neighbors */
647         j_index_start    = jindex[iidx];
648         j_index_end      = jindex[iidx+1];
649
650         /* Get outer coordinate index */
651         inr              = iinr[iidx];
652         i_coord_offset   = DIM*inr;
653
654         /* Load i particle coords and add shift vector */
655         gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
656                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
657
658         fix0             = _mm_setzero_pd();
659         fiy0             = _mm_setzero_pd();
660         fiz0             = _mm_setzero_pd();
661         fix1             = _mm_setzero_pd();
662         fiy1             = _mm_setzero_pd();
663         fiz1             = _mm_setzero_pd();
664         fix2             = _mm_setzero_pd();
665         fiy2             = _mm_setzero_pd();
666         fiz2             = _mm_setzero_pd();
667         fix3             = _mm_setzero_pd();
668         fiy3             = _mm_setzero_pd();
669         fiz3             = _mm_setzero_pd();
670
671         /* Start inner kernel loop */
672         for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
673         {
674
675             /* Get j neighbor index, and coordinate index */
676             jnrA             = jjnr[jidx];
677             jnrB             = jjnr[jidx+1];
678             j_coord_offsetA  = DIM*jnrA;
679             j_coord_offsetB  = DIM*jnrB;
680             
681             /* load j atom coordinates */
682             gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
683                                               &jx0,&jy0,&jz0);
684             
685             /* Calculate displacement vector */
686             dx00             = _mm_sub_pd(ix0,jx0);
687             dy00             = _mm_sub_pd(iy0,jy0);
688             dz00             = _mm_sub_pd(iz0,jz0);
689             dx10             = _mm_sub_pd(ix1,jx0);
690             dy10             = _mm_sub_pd(iy1,jy0);
691             dz10             = _mm_sub_pd(iz1,jz0);
692             dx20             = _mm_sub_pd(ix2,jx0);
693             dy20             = _mm_sub_pd(iy2,jy0);
694             dz20             = _mm_sub_pd(iz2,jz0);
695             dx30             = _mm_sub_pd(ix3,jx0);
696             dy30             = _mm_sub_pd(iy3,jy0);
697             dz30             = _mm_sub_pd(iz3,jz0);
698
699             /* Calculate squared distance and things based on it */
700             rsq00            = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
701             rsq10            = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
702             rsq20            = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
703             rsq30            = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
704
705             rinv10           = gmx_mm_invsqrt_pd(rsq10);
706             rinv20           = gmx_mm_invsqrt_pd(rsq20);
707             rinv30           = gmx_mm_invsqrt_pd(rsq30);
708
709             rinvsq00         = gmx_mm_inv_pd(rsq00);
710             rinvsq10         = _mm_mul_pd(rinv10,rinv10);
711             rinvsq20         = _mm_mul_pd(rinv20,rinv20);
712             rinvsq30         = _mm_mul_pd(rinv30,rinv30);
713
714             /* Load parameters for j particles */
715             jq0              = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
716             vdwjidx0A        = 2*vdwtype[jnrA+0];
717             vdwjidx0B        = 2*vdwtype[jnrB+0];
718
719             fjx0             = _mm_setzero_pd();
720             fjy0             = _mm_setzero_pd();
721             fjz0             = _mm_setzero_pd();
722
723             /**************************
724              * CALCULATE INTERACTIONS *
725              **************************/
726
727             /* Compute parameters for interactions between i and j atoms */
728             gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,
729                                          vdwparam+vdwioffset0+vdwjidx0B,&c6_00,&c12_00);
730
731             /* LENNARD-JONES DISPERSION/REPULSION */
732
733             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
734             fvdw             = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
735
736             fscal            = fvdw;
737
738             /* Calculate temporary vectorial force */
739             tx               = _mm_mul_pd(fscal,dx00);
740             ty               = _mm_mul_pd(fscal,dy00);
741             tz               = _mm_mul_pd(fscal,dz00);
742
743             /* Update vectorial force */
744             fix0             = _mm_add_pd(fix0,tx);
745             fiy0             = _mm_add_pd(fiy0,ty);
746             fiz0             = _mm_add_pd(fiz0,tz);
747
748             fjx0             = _mm_add_pd(fjx0,tx);
749             fjy0             = _mm_add_pd(fjy0,ty);
750             fjz0             = _mm_add_pd(fjz0,tz);
751
752             /**************************
753              * CALCULATE INTERACTIONS *
754              **************************/
755
756             /* Compute parameters for interactions between i and j atoms */
757             qq10             = _mm_mul_pd(iq1,jq0);
758
759             /* COULOMB ELECTROSTATICS */
760             velec            = _mm_mul_pd(qq10,rinv10);
761             felec            = _mm_mul_pd(velec,rinvsq10);
762
763             fscal            = felec;
764
765             /* Calculate temporary vectorial force */
766             tx               = _mm_mul_pd(fscal,dx10);
767             ty               = _mm_mul_pd(fscal,dy10);
768             tz               = _mm_mul_pd(fscal,dz10);
769
770             /* Update vectorial force */
771             fix1             = _mm_add_pd(fix1,tx);
772             fiy1             = _mm_add_pd(fiy1,ty);
773             fiz1             = _mm_add_pd(fiz1,tz);
774
775             fjx0             = _mm_add_pd(fjx0,tx);
776             fjy0             = _mm_add_pd(fjy0,ty);
777             fjz0             = _mm_add_pd(fjz0,tz);
778
779             /**************************
780              * CALCULATE INTERACTIONS *
781              **************************/
782
783             /* Compute parameters for interactions between i and j atoms */
784             qq20             = _mm_mul_pd(iq2,jq0);
785
786             /* COULOMB ELECTROSTATICS */
787             velec            = _mm_mul_pd(qq20,rinv20);
788             felec            = _mm_mul_pd(velec,rinvsq20);
789
790             fscal            = felec;
791
792             /* Calculate temporary vectorial force */
793             tx               = _mm_mul_pd(fscal,dx20);
794             ty               = _mm_mul_pd(fscal,dy20);
795             tz               = _mm_mul_pd(fscal,dz20);
796
797             /* Update vectorial force */
798             fix2             = _mm_add_pd(fix2,tx);
799             fiy2             = _mm_add_pd(fiy2,ty);
800             fiz2             = _mm_add_pd(fiz2,tz);
801
802             fjx0             = _mm_add_pd(fjx0,tx);
803             fjy0             = _mm_add_pd(fjy0,ty);
804             fjz0             = _mm_add_pd(fjz0,tz);
805
806             /**************************
807              * CALCULATE INTERACTIONS *
808              **************************/
809
810             /* Compute parameters for interactions between i and j atoms */
811             qq30             = _mm_mul_pd(iq3,jq0);
812
813             /* COULOMB ELECTROSTATICS */
814             velec            = _mm_mul_pd(qq30,rinv30);
815             felec            = _mm_mul_pd(velec,rinvsq30);
816
817             fscal            = felec;
818
819             /* Calculate temporary vectorial force */
820             tx               = _mm_mul_pd(fscal,dx30);
821             ty               = _mm_mul_pd(fscal,dy30);
822             tz               = _mm_mul_pd(fscal,dz30);
823
824             /* Update vectorial force */
825             fix3             = _mm_add_pd(fix3,tx);
826             fiy3             = _mm_add_pd(fiy3,ty);
827             fiz3             = _mm_add_pd(fiz3,tz);
828
829             fjx0             = _mm_add_pd(fjx0,tx);
830             fjy0             = _mm_add_pd(fjy0,ty);
831             fjz0             = _mm_add_pd(fjz0,tz);
832
833             gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
834
835             /* Inner loop uses 111 flops */
836         }
837
838         if(jidx<j_index_end)
839         {
840
841             jnrA             = jjnr[jidx];
842             j_coord_offsetA  = DIM*jnrA;
843
844             /* load j atom coordinates */
845             gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
846                                               &jx0,&jy0,&jz0);
847             
848             /* Calculate displacement vector */
849             dx00             = _mm_sub_pd(ix0,jx0);
850             dy00             = _mm_sub_pd(iy0,jy0);
851             dz00             = _mm_sub_pd(iz0,jz0);
852             dx10             = _mm_sub_pd(ix1,jx0);
853             dy10             = _mm_sub_pd(iy1,jy0);
854             dz10             = _mm_sub_pd(iz1,jz0);
855             dx20             = _mm_sub_pd(ix2,jx0);
856             dy20             = _mm_sub_pd(iy2,jy0);
857             dz20             = _mm_sub_pd(iz2,jz0);
858             dx30             = _mm_sub_pd(ix3,jx0);
859             dy30             = _mm_sub_pd(iy3,jy0);
860             dz30             = _mm_sub_pd(iz3,jz0);
861
862             /* Calculate squared distance and things based on it */
863             rsq00            = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
864             rsq10            = gmx_mm_calc_rsq_pd(dx10,dy10,dz10);
865             rsq20            = gmx_mm_calc_rsq_pd(dx20,dy20,dz20);
866             rsq30            = gmx_mm_calc_rsq_pd(dx30,dy30,dz30);
867
868             rinv10           = gmx_mm_invsqrt_pd(rsq10);
869             rinv20           = gmx_mm_invsqrt_pd(rsq20);
870             rinv30           = gmx_mm_invsqrt_pd(rsq30);
871
872             rinvsq00         = gmx_mm_inv_pd(rsq00);
873             rinvsq10         = _mm_mul_pd(rinv10,rinv10);
874             rinvsq20         = _mm_mul_pd(rinv20,rinv20);
875             rinvsq30         = _mm_mul_pd(rinv30,rinv30);
876
877             /* Load parameters for j particles */
878             jq0              = _mm_load_sd(charge+jnrA+0);
879             vdwjidx0A        = 2*vdwtype[jnrA+0];
880
881             fjx0             = _mm_setzero_pd();
882             fjy0             = _mm_setzero_pd();
883             fjz0             = _mm_setzero_pd();
884
885             /**************************
886              * CALCULATE INTERACTIONS *
887              **************************/
888
889             /* Compute parameters for interactions between i and j atoms */
890             gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset0+vdwjidx0A,&c6_00,&c12_00);
891
892             /* LENNARD-JONES DISPERSION/REPULSION */
893
894             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq00,rinvsq00),rinvsq00);
895             fvdw             = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_00,rinvsix),c6_00),_mm_mul_pd(rinvsix,rinvsq00));
896
897             fscal            = fvdw;
898
899             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
900
901             /* Calculate temporary vectorial force */
902             tx               = _mm_mul_pd(fscal,dx00);
903             ty               = _mm_mul_pd(fscal,dy00);
904             tz               = _mm_mul_pd(fscal,dz00);
905
906             /* Update vectorial force */
907             fix0             = _mm_add_pd(fix0,tx);
908             fiy0             = _mm_add_pd(fiy0,ty);
909             fiz0             = _mm_add_pd(fiz0,tz);
910
911             fjx0             = _mm_add_pd(fjx0,tx);
912             fjy0             = _mm_add_pd(fjy0,ty);
913             fjz0             = _mm_add_pd(fjz0,tz);
914
915             /**************************
916              * CALCULATE INTERACTIONS *
917              **************************/
918
919             /* Compute parameters for interactions between i and j atoms */
920             qq10             = _mm_mul_pd(iq1,jq0);
921
922             /* COULOMB ELECTROSTATICS */
923             velec            = _mm_mul_pd(qq10,rinv10);
924             felec            = _mm_mul_pd(velec,rinvsq10);
925
926             fscal            = felec;
927
928             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
929
930             /* Calculate temporary vectorial force */
931             tx               = _mm_mul_pd(fscal,dx10);
932             ty               = _mm_mul_pd(fscal,dy10);
933             tz               = _mm_mul_pd(fscal,dz10);
934
935             /* Update vectorial force */
936             fix1             = _mm_add_pd(fix1,tx);
937             fiy1             = _mm_add_pd(fiy1,ty);
938             fiz1             = _mm_add_pd(fiz1,tz);
939
940             fjx0             = _mm_add_pd(fjx0,tx);
941             fjy0             = _mm_add_pd(fjy0,ty);
942             fjz0             = _mm_add_pd(fjz0,tz);
943
944             /**************************
945              * CALCULATE INTERACTIONS *
946              **************************/
947
948             /* Compute parameters for interactions between i and j atoms */
949             qq20             = _mm_mul_pd(iq2,jq0);
950
951             /* COULOMB ELECTROSTATICS */
952             velec            = _mm_mul_pd(qq20,rinv20);
953             felec            = _mm_mul_pd(velec,rinvsq20);
954
955             fscal            = felec;
956
957             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
958
959             /* Calculate temporary vectorial force */
960             tx               = _mm_mul_pd(fscal,dx20);
961             ty               = _mm_mul_pd(fscal,dy20);
962             tz               = _mm_mul_pd(fscal,dz20);
963
964             /* Update vectorial force */
965             fix2             = _mm_add_pd(fix2,tx);
966             fiy2             = _mm_add_pd(fiy2,ty);
967             fiz2             = _mm_add_pd(fiz2,tz);
968
969             fjx0             = _mm_add_pd(fjx0,tx);
970             fjy0             = _mm_add_pd(fjy0,ty);
971             fjz0             = _mm_add_pd(fjz0,tz);
972
973             /**************************
974              * CALCULATE INTERACTIONS *
975              **************************/
976
977             /* Compute parameters for interactions between i and j atoms */
978             qq30             = _mm_mul_pd(iq3,jq0);
979
980             /* COULOMB ELECTROSTATICS */
981             velec            = _mm_mul_pd(qq30,rinv30);
982             felec            = _mm_mul_pd(velec,rinvsq30);
983
984             fscal            = felec;
985
986             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
987
988             /* Calculate temporary vectorial force */
989             tx               = _mm_mul_pd(fscal,dx30);
990             ty               = _mm_mul_pd(fscal,dy30);
991             tz               = _mm_mul_pd(fscal,dz30);
992
993             /* Update vectorial force */
994             fix3             = _mm_add_pd(fix3,tx);
995             fiy3             = _mm_add_pd(fiy3,ty);
996             fiz3             = _mm_add_pd(fiz3,tz);
997
998             fjx0             = _mm_add_pd(fjx0,tx);
999             fjy0             = _mm_add_pd(fjy0,ty);
1000             fjz0             = _mm_add_pd(fjz0,tz);
1001
1002             gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1003
1004             /* Inner loop uses 111 flops */
1005         }
1006
1007         /* End of innermost loop */
1008
1009         gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1010                                               f+i_coord_offset,fshift+i_shift_offset);
1011
1012         /* Increment number of inner iterations */
1013         inneriter                  += j_index_end - j_index_start;
1014
1015         /* Outer loop uses 24 flops */
1016     }
1017
1018     /* Increment number of outer iterations */
1019     outeriter        += nri;
1020
1021     /* Update outer/inner flops */
1022
1023     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*111);
1024 }