2 * Note: this file was generated by the Gromacs c kernel generator.
4 * This source code is part of
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28 #include "../nb_kernel.h"
29 #include "types/simple.h"
34 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwBham_GeomP1P1_VF_c
35 * Electrostatics interaction: ReactionField
36 * VdW interaction: Buckingham
37 * Geometry: Particle-Particle
38 * Calculate force/pot: PotentialAndForce
41 nb_kernel_ElecRF_VdwBham_GeomP1P1_VF_c
42 (t_nblist * gmx_restrict nlist,
43 rvec * gmx_restrict xx,
44 rvec * gmx_restrict ff,
45 t_forcerec * gmx_restrict fr,
46 t_mdatoms * gmx_restrict mdatoms,
47 nb_kernel_data_t * gmx_restrict kernel_data,
48 t_nrnb * gmx_restrict nrnb)
50 int i_shift_offset,i_coord_offset,j_coord_offset;
51 int j_index_start,j_index_end;
52 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
53 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
54 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
55 real *shiftvec,*fshift,*x,*f;
57 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
59 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
60 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
61 real velec,felec,velecsum,facel,crf,krf,krf2;
64 real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
73 jindex = nlist->jindex;
75 shiftidx = nlist->shift;
77 shiftvec = fr->shift_vec[0];
78 fshift = fr->fshift[0];
80 charge = mdatoms->chargeA;
86 vdwtype = mdatoms->typeA;
91 /* Start outer loop over neighborlists */
92 for(iidx=0; iidx<nri; iidx++)
94 /* Load shift vector for this list */
95 i_shift_offset = DIM*shiftidx[iidx];
96 shX = shiftvec[i_shift_offset+XX];
97 shY = shiftvec[i_shift_offset+YY];
98 shZ = shiftvec[i_shift_offset+ZZ];
100 /* Load limits for loop over neighbors */
101 j_index_start = jindex[iidx];
102 j_index_end = jindex[iidx+1];
104 /* Get outer coordinate index */
106 i_coord_offset = DIM*inr;
108 /* Load i particle coords and add shift vector */
109 ix0 = shX + x[i_coord_offset+DIM*0+XX];
110 iy0 = shY + x[i_coord_offset+DIM*0+YY];
111 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
117 /* Load parameters for i particles */
118 iq0 = facel*charge[inr+0];
119 vdwioffset0 = 3*nvdwtype*vdwtype[inr+0];
121 /* Reset potential sums */
125 /* Start inner kernel loop */
126 for(jidx=j_index_start; jidx<j_index_end; jidx++)
128 /* Get j neighbor index, and coordinate index */
130 j_coord_offset = DIM*jnr;
132 /* load j atom coordinates */
133 jx0 = x[j_coord_offset+DIM*0+XX];
134 jy0 = x[j_coord_offset+DIM*0+YY];
135 jz0 = x[j_coord_offset+DIM*0+ZZ];
137 /* Calculate displacement vector */
142 /* Calculate squared distance and things based on it */
143 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
145 rinv00 = gmx_invsqrt(rsq00);
147 rinvsq00 = rinv00*rinv00;
149 /* Load parameters for j particles */
151 vdwjidx0 = 3*vdwtype[jnr+0];
153 /**************************
154 * CALCULATE INTERACTIONS *
155 **************************/
160 c6_00 = vdwparam[vdwioffset0+vdwjidx0];
161 cexp1_00 = vdwparam[vdwioffset0+vdwjidx0+1];
162 cexp2_00 = vdwparam[vdwioffset0+vdwjidx0+2];
164 /* REACTION-FIELD ELECTROSTATICS */
165 velec = qq00*(rinv00+krf*rsq00-crf);
166 felec = qq00*(rinv00*rinvsq00-krf2);
168 /* BUCKINGHAM DISPERSION/REPULSION */
169 rinvsix = rinvsq00*rinvsq00*rinvsq00;
170 vvdw6 = c6_00*rinvsix;
172 vvdwexp = cexp1_00*exp(-br);
173 vvdw = vvdwexp - vvdw6*(1.0/6.0);
174 fvdw = (br*vvdwexp-vvdw6)*rinvsq00;
176 /* Update potential sums from outer loop */
182 /* Calculate temporary vectorial force */
187 /* Update vectorial force */
191 f[j_coord_offset+DIM*0+XX] -= tx;
192 f[j_coord_offset+DIM*0+YY] -= ty;
193 f[j_coord_offset+DIM*0+ZZ] -= tz;
195 /* Inner loop uses 71 flops */
197 /* End of innermost loop */
200 f[i_coord_offset+DIM*0+XX] += fix0;
201 f[i_coord_offset+DIM*0+YY] += fiy0;
202 f[i_coord_offset+DIM*0+ZZ] += fiz0;
206 fshift[i_shift_offset+XX] += tx;
207 fshift[i_shift_offset+YY] += ty;
208 fshift[i_shift_offset+ZZ] += tz;
211 /* Update potential energies */
212 kernel_data->energygrp_elec[ggid] += velecsum;
213 kernel_data->energygrp_vdw[ggid] += vvdwsum;
215 /* Increment number of inner iterations */
216 inneriter += j_index_end - j_index_start;
218 /* Outer loop uses 15 flops */
221 /* Increment number of outer iterations */
224 /* Update outer/inner flops */
226 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_VF,outeriter*15 + inneriter*71);
229 * Gromacs nonbonded kernel: nb_kernel_ElecRF_VdwBham_GeomP1P1_F_c
230 * Electrostatics interaction: ReactionField
231 * VdW interaction: Buckingham
232 * Geometry: Particle-Particle
233 * Calculate force/pot: Force
236 nb_kernel_ElecRF_VdwBham_GeomP1P1_F_c
237 (t_nblist * gmx_restrict nlist,
238 rvec * gmx_restrict xx,
239 rvec * gmx_restrict ff,
240 t_forcerec * gmx_restrict fr,
241 t_mdatoms * gmx_restrict mdatoms,
242 nb_kernel_data_t * gmx_restrict kernel_data,
243 t_nrnb * gmx_restrict nrnb)
245 int i_shift_offset,i_coord_offset,j_coord_offset;
246 int j_index_start,j_index_end;
247 int nri,inr,ggid,iidx,jidx,jnr,outeriter,inneriter;
248 real shX,shY,shZ,tx,ty,tz,fscal,rcutoff,rcutoff2;
249 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
250 real *shiftvec,*fshift,*x,*f;
252 real ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
254 real jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
255 real dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00,cexp1_00,cexp2_00;
256 real velec,felec,velecsum,facel,crf,krf,krf2;
259 real rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,br,vvdwexp,sh_vdw_invrcut6;
268 jindex = nlist->jindex;
270 shiftidx = nlist->shift;
272 shiftvec = fr->shift_vec[0];
273 fshift = fr->fshift[0];
275 charge = mdatoms->chargeA;
279 nvdwtype = fr->ntype;
281 vdwtype = mdatoms->typeA;
286 /* Start outer loop over neighborlists */
287 for(iidx=0; iidx<nri; iidx++)
289 /* Load shift vector for this list */
290 i_shift_offset = DIM*shiftidx[iidx];
291 shX = shiftvec[i_shift_offset+XX];
292 shY = shiftvec[i_shift_offset+YY];
293 shZ = shiftvec[i_shift_offset+ZZ];
295 /* Load limits for loop over neighbors */
296 j_index_start = jindex[iidx];
297 j_index_end = jindex[iidx+1];
299 /* Get outer coordinate index */
301 i_coord_offset = DIM*inr;
303 /* Load i particle coords and add shift vector */
304 ix0 = shX + x[i_coord_offset+DIM*0+XX];
305 iy0 = shY + x[i_coord_offset+DIM*0+YY];
306 iz0 = shZ + x[i_coord_offset+DIM*0+ZZ];
312 /* Load parameters for i particles */
313 iq0 = facel*charge[inr+0];
314 vdwioffset0 = 3*nvdwtype*vdwtype[inr+0];
316 /* Start inner kernel loop */
317 for(jidx=j_index_start; jidx<j_index_end; jidx++)
319 /* Get j neighbor index, and coordinate index */
321 j_coord_offset = DIM*jnr;
323 /* load j atom coordinates */
324 jx0 = x[j_coord_offset+DIM*0+XX];
325 jy0 = x[j_coord_offset+DIM*0+YY];
326 jz0 = x[j_coord_offset+DIM*0+ZZ];
328 /* Calculate displacement vector */
333 /* Calculate squared distance and things based on it */
334 rsq00 = dx00*dx00+dy00*dy00+dz00*dz00;
336 rinv00 = gmx_invsqrt(rsq00);
338 rinvsq00 = rinv00*rinv00;
340 /* Load parameters for j particles */
342 vdwjidx0 = 3*vdwtype[jnr+0];
344 /**************************
345 * CALCULATE INTERACTIONS *
346 **************************/
351 c6_00 = vdwparam[vdwioffset0+vdwjidx0];
352 cexp1_00 = vdwparam[vdwioffset0+vdwjidx0+1];
353 cexp2_00 = vdwparam[vdwioffset0+vdwjidx0+2];
355 /* REACTION-FIELD ELECTROSTATICS */
356 felec = qq00*(rinv00*rinvsq00-krf2);
358 /* BUCKINGHAM DISPERSION/REPULSION */
359 rinvsix = rinvsq00*rinvsq00*rinvsq00;
360 vvdw6 = c6_00*rinvsix;
362 vvdwexp = cexp1_00*exp(-br);
363 fvdw = (br*vvdwexp-vvdw6)*rinvsq00;
367 /* Calculate temporary vectorial force */
372 /* Update vectorial force */
376 f[j_coord_offset+DIM*0+XX] -= tx;
377 f[j_coord_offset+DIM*0+YY] -= ty;
378 f[j_coord_offset+DIM*0+ZZ] -= tz;
380 /* Inner loop uses 63 flops */
382 /* End of innermost loop */
385 f[i_coord_offset+DIM*0+XX] += fix0;
386 f[i_coord_offset+DIM*0+YY] += fiy0;
387 f[i_coord_offset+DIM*0+ZZ] += fiz0;
391 fshift[i_shift_offset+XX] += tx;
392 fshift[i_shift_offset+YY] += ty;
393 fshift[i_shift_offset+ZZ] += tz;
395 /* Increment number of inner iterations */
396 inneriter += j_index_end - j_index_start;
398 /* Outer loop uses 13 flops */
401 /* Increment number of outer iterations */
404 /* Update outer/inner flops */
406 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_F,outeriter*13 + inneriter*63);